0.014432
0.000000
0.006096
0.000000
0.016188
0.000000
0.000000
0.000000
0.015393
0.00000
0.00000
0.00000
To, T.K.
Kotra, L.P.
Pai, E.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
112.90
90.00
69.290
61.775
70.523
C9 H14 N3 O9 P
339.196
n
N-hydroxycytidine 5'-(dihydrogen phosphate)
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H14 N3 O9 P
339.196
5-hydroxycytidine 5'-(dihydrogen phosphate)
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
N
14
N
N
N
15
N
C
N
16
N
O
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
O
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
C
N
56
N
C
N
57
N
N
N
58
N
C
N
59
N
N
N
60
N
N
N
61
N
O
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
R
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
S
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
Y
192
N
C
Y
193
N
N
Y
194
N
C
Y
195
N
C
Y
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
S
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
S
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
O
N
372
N
P
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
C
N
377
R
C
N
378
N
O
N
379
S
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
R
C
N
384
N
N
N
385
N
C
N
386
N
O
N
387
N
N
N
388
N
C
N
389
N
N
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
N
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
C
N
464
N
C
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
doub
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
9988
9997
10.1021/jm301176r
22991951
Novel cytidine-based orotidine-5'-monophosphate decarboxylase inhibitors with an unusual twist.
2012
10.2210/pdb4hkp/pdb
pdb_00004hkp
100
1
IMAGE PLATE
2009-06-29
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.54179
1.0
1.54179
ROTATING ANODE
RIGAKU MICROMAX-007
34054.156
Uridine 5'-monophosphate synthase
4.1.1.23
UNP residues 190-480
2
man
polymer
92.094
GLYCEROL
6
syn
non-polymer
339.196
5-hydroxycytidine 5'-(dihydrogen phosphate)
2
syn
non-polymer
339.196
N-hydroxycytidine 5'-(dihydrogen phosphate)
1
syn
non-polymer
18.015
water
300
nat
water
UMP synthase, Orotate phosphoribosyltransferase, OPRT, OPRTase, Orotidine 5'-phosphate decarboxylase, ODC, OMPdecase
no
no
MGSSHHHHHHSSGLVPRGSHMDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQ
KKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEG
GIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSM
KPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
MGSSHHHHHHSSGLVPRGSHMDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQ
KKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEG
GIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSM
KPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UMPS, OK/SW-cl.21
9606
Homo sapiens
562
Escherichia coli
1
2.04
39.76
VAPOR DIFFUSION, HANGING DROP
7.5
1.6M-1.7M Ammonium sulphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Atomic model
Data collection
Database references
Derived calculations
Data collection
Database references
1
0
2012-11-14
1
1
2012-12-19
2
0
2021-08-04
2
1
2024-02-28
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.mon_nstd_flag
_chem_comp.type
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2012-10-15
REL
REL
GOL
GLYCEROL
TKW
5-hydroxycytidine 5'-(dihydrogen phosphate)
16B
N-hydroxycytidine 5'-(dihydrogen phosphate)
HOH
water
GOL
1
2
GOL
GOL
301
A
GOL
1
2
GOL
GOL
302
A
GOL
1
2
GOL
GOL
303
A
TKW
1
3
TKW
TKW
304
A
DRG
1
4
16B
16B
305
A
GOL
1
2
GOL
GOL
301
B
GOL
1
2
GOL
GOL
302
B
GOL
1
2
GOL
GOL
303
B
TKW
1
3
TKW
TKW
304
B
HOH
2
5
HOH
HOH
401
A
HOH
4
5
HOH
HOH
402
A
HOH
5
5
HOH
HOH
403
A
HOH
9
5
HOH
HOH
404
A
HOH
11
5
HOH
HOH
405
A
HOH
12
5
HOH
HOH
406
A
HOH
16
5
HOH
HOH
407
A
HOH
17
5
HOH
HOH
408
A
HOH
21
5
HOH
HOH
409
A
HOH
22
5
HOH
HOH
410
A
HOH
23
5
HOH
HOH
411
A
HOH
24
5
HOH
HOH
412
A
HOH
28
5
HOH
HOH
413
A
HOH
29
5
HOH
HOH
414
A
HOH
30
5
HOH
HOH
415
A
HOH
34
5
HOH
HOH
416
A
HOH
36
5
HOH
HOH
417
A
HOH
37
5
HOH
HOH
418
A
HOH
51
5
HOH
HOH
419
A
HOH
53
5
HOH
HOH
420
A
HOH
57
5
HOH
HOH
421
A
HOH
65
5
HOH
HOH
422
A
HOH
67
5
HOH
HOH
423
A
HOH
68
5
HOH
HOH
424
A
HOH
71
5
HOH
HOH
425
A
HOH
72
5
HOH
HOH
426
A
HOH
73
5
HOH
HOH
427
A
HOH
76
5
HOH
HOH
428
A
HOH
82
5
HOH
HOH
429
A
HOH
88
5
HOH
HOH
430
A
HOH
89
5
HOH
HOH
431
A
HOH
90
5
HOH
HOH
432
A
HOH
91
5
HOH
HOH
433
A
HOH
99
5
HOH
HOH
434
A
HOH
100
5
HOH
HOH
435
A
HOH
103
5
HOH
HOH
436
A
HOH
105
5
HOH
HOH
437
A
HOH
106
5
HOH
HOH
438
A
HOH
119
5
HOH
HOH
439
A
HOH
121
5
HOH
HOH
440
A
HOH
124
5
HOH
HOH
441
A
HOH
127
5
HOH
HOH
442
A
HOH
130
5
HOH
HOH
443
A
HOH
145
5
HOH
HOH
444
A
HOH
146
5
HOH
HOH
445
A
HOH
147
5
HOH
HOH
446
A
HOH
149
5
HOH
HOH
447
A
HOH
154
5
HOH
HOH
448
A
HOH
155
5
HOH
HOH
449
A
HOH
161
5
HOH
HOH
450
A
HOH
165
5
HOH
HOH
451
A
HOH
168
5
HOH
HOH
452
A
HOH
169
5
HOH
HOH
453
A
HOH
173
5
HOH
HOH
454
A
HOH
175
5
HOH
HOH
455
A
HOH
177
5
HOH
HOH
456
A
HOH
195
5
HOH
HOH
457
A
HOH
219
5
HOH
HOH
458
A
HOH
226
5
HOH
HOH
459
A
HOH
232
5
HOH
HOH
460
A
HOH
245
5
HOH
HOH
461
A
HOH
249
5
HOH
HOH
462
A
HOH
253
5
HOH
HOH
463
A
HOH
285
5
HOH
HOH
464
A
HOH
286
5
HOH
HOH
465
A
HOH
290
5
HOH
HOH
466
A
HOH
295
5
HOH
HOH
467
A
HOH
297
5
HOH
HOH
468
A
HOH
301
5
HOH
HOH
469
A
HOH
305
5
HOH
HOH
470
A
HOH
306
5
HOH
HOH
471
A
HOH
310
5
HOH
HOH
472
A
HOH
321
5
HOH
HOH
473
A
HOH
328
5
HOH
HOH
474
A
HOH
333
5
HOH
HOH
475
A
HOH
334
5
HOH
HOH
476
A
HOH
347
5
HOH
HOH
477
A
HOH
356
5
HOH
HOH
478
A
HOH
357
5
HOH
HOH
479
A
HOH
359
5
HOH
HOH
480
A
HOH
368
5
HOH
HOH
481
A
HOH
379
5
HOH
HOH
482
A
HOH
388
5
HOH
HOH
483
A
HOH
394
5
HOH
HOH
484
A
HOH
422
5
HOH
HOH
485
A
HOH
432
5
HOH
HOH
486
A
HOH
464
5
HOH
HOH
487
A
HOH
465
5
HOH
HOH
488
A
HOH
491
5
HOH
HOH
489
A
HOH
499
5
HOH
HOH
490
A
HOH
546
5
HOH
HOH
491
A
HOH
586
5
HOH
HOH
492
A
HOH
593
5
HOH
HOH
493
A
HOH
596
5
HOH
HOH
494
A
HOH
604
5
HOH
HOH
495
A
HOH
623
5
HOH
HOH
496
A
HOH
631
5
HOH
HOH
497
A
HOH
632
5
HOH
HOH
498
A
HOH
633
5
HOH
HOH
499
A
HOH
634
5
HOH
HOH
500
A
HOH
636
5
HOH
HOH
501
A
HOH
637
5
HOH
HOH
502
A
HOH
638
5
HOH
HOH
503
A
HOH
640
5
HOH
HOH
504
A
HOH
641
5
HOH
HOH
505
A
HOH
643
5
HOH
HOH
506
A
HOH
644
5
HOH
HOH
507
A
HOH
646
5
HOH
HOH
508
A
HOH
647
5
HOH
HOH
509
A
HOH
648
5
HOH
HOH
510
A
HOH
651
5
HOH
HOH
511
A
HOH
652
5
HOH
HOH
512
A
HOH
655
5
HOH
HOH
513
A
HOH
656
5
HOH
HOH
514
A
HOH
661
5
HOH
HOH
515
A
HOH
662
5
HOH
HOH
516
A
HOH
663
5
HOH
HOH
517
A
HOH
666
5
HOH
HOH
518
A
HOH
667
5
HOH
HOH
519
A
HOH
669
5
HOH
HOH
520
A
HOH
670
5
HOH
HOH
521
A
HOH
671
5
HOH
HOH
522
A
HOH
672
5
HOH
HOH
523
A
HOH
680
5
HOH
HOH
524
A
HOH
681
5
HOH
HOH
525
A
HOH
684
5
HOH
HOH
526
A
HOH
686
5
HOH
HOH
527
A
HOH
688
5
HOH
HOH
528
A
HOH
691
5
HOH
HOH
529
A
HOH
692
5
HOH
HOH
530
A
HOH
693
5
HOH
HOH
531
A
HOH
696
5
HOH
HOH
532
A
HOH
697
5
HOH
HOH
533
A
HOH
1
5
HOH
HOH
534
A
HOH
2
5
HOH
HOH
535
A
HOH
5
5
HOH
HOH
536
A
HOH
8
5
HOH
HOH
537
A
HOH
48
5
HOH
HOH
538
A
HOH
63
5
HOH
HOH
539
A
HOH
67
5
HOH
HOH
540
A
HOH
273
5
HOH
HOH
541
A
HOH
56
5
HOH
HOH
542
A
HOH
139
5
HOH
HOH
543
A
HOH
1
5
HOH
HOH
401
B
HOH
3
5
HOH
HOH
402
B
HOH
6
5
HOH
HOH
403
B
HOH
10
5
HOH
HOH
404
B
HOH
13
5
HOH
HOH
405
B
HOH
18
5
HOH
HOH
406
B
HOH
19
5
HOH
HOH
407
B
HOH
20
5
HOH
HOH
408
B
HOH
25
5
HOH
HOH
409
B
HOH
26
5
HOH
HOH
410
B
HOH
27
5
HOH
HOH
411
B
HOH
32
5
HOH
HOH
412
B
HOH
33
5
HOH
HOH
413
B
HOH
35
5
HOH
HOH
414
B
HOH
38
5
HOH
HOH
415
B
HOH
40
5
HOH
HOH
416
B
HOH
41
5
HOH
HOH
417
B
HOH
42
5
HOH
HOH
418
B
HOH
43
5
HOH
HOH
419
B
HOH
45
5
HOH
HOH
420
B
HOH
46
5
HOH
HOH
421
B
HOH
48
5
HOH
HOH
422
B
HOH
50
5
HOH
HOH
423
B
HOH
52
5
HOH
HOH
424
B
HOH
54
5
HOH
HOH
425
B
HOH
55
5
HOH
HOH
426
B
HOH
56
5
HOH
HOH
427
B
HOH
62
5
HOH
HOH
428
B
HOH
63
5
HOH
HOH
429
B
HOH
64
5
HOH
HOH
430
B
HOH
66
5
HOH
HOH
431
B
HOH
70
5
HOH
HOH
432
B
HOH
77
5
HOH
HOH
433
B
HOH
78
5
HOH
HOH
434
B
HOH
79
5
HOH
HOH
435
B
HOH
81
5
HOH
HOH
436
B
HOH
83
5
HOH
HOH
437
B
HOH
84
5
HOH
HOH
438
B
HOH
86
5
HOH
HOH
439
B
HOH
87
5
HOH
HOH
440
B
HOH
92
5
HOH
HOH
441
B
HOH
93
5
HOH
HOH
442
B
HOH
94
5
HOH
HOH
443
B
HOH
96
5
HOH
HOH
444
B
HOH
97
5
HOH
HOH
445
B
HOH
107
5
HOH
HOH
446
B
HOH
108
5
HOH
HOH
447
B
HOH
109
5
HOH
HOH
448
B
HOH
110
5
HOH
HOH
449
B
HOH
111
5
HOH
HOH
450
B
HOH
112
5
HOH
HOH
451
B
HOH
123
5
HOH
HOH
452
B
HOH
128
5
HOH
HOH
453
B
HOH
131
5
HOH
HOH
454
B
HOH
133
5
HOH
HOH
455
B
HOH
138
5
HOH
HOH
456
B
HOH
139
5
HOH
HOH
457
B
HOH
148
5
HOH
HOH
458
B
HOH
150
5
HOH
HOH
459
B
HOH
151
5
HOH
HOH
460
B
HOH
153
5
HOH
HOH
461
B
HOH
156
5
HOH
HOH
462
B
HOH
157
5
HOH
HOH
463
B
HOH
170
5
HOH
HOH
464
B
HOH
172
5
HOH
HOH
465
B
HOH
176
5
HOH
HOH
466
B
HOH
184
5
HOH
HOH
467
B
HOH
189
5
HOH
HOH
468
B
HOH
194
5
HOH
HOH
469
B
HOH
196
5
HOH
HOH
470
B
HOH
198
5
HOH
HOH
471
B
HOH
200
5
HOH
HOH
472
B
HOH
209
5
HOH
HOH
473
B
HOH
210
5
HOH
HOH
474
B
HOH
211
5
HOH
HOH
475
B
HOH
218
5
HOH
HOH
476
B
HOH
222
5
HOH
HOH
477
B
HOH
234
5
HOH
HOH
478
B
HOH
248
5
HOH
HOH
479
B
HOH
250
5
HOH
HOH
480
B
HOH
255
5
HOH
HOH
481
B
HOH
258
5
HOH
HOH
482
B
HOH
261
5
HOH
HOH
483
B
HOH
264
5
HOH
HOH
484
B
HOH
267
5
HOH
HOH
485
B
HOH
269
5
HOH
HOH
486
B
HOH
278
5
HOH
HOH
487
B
HOH
280
5
HOH
HOH
488
B
HOH
287
5
HOH
HOH
489
B
HOH
291
5
HOH
HOH
490
B
HOH
299
5
HOH
HOH
491
B
HOH
304
5
HOH
HOH
492
B
HOH
315
5
HOH
HOH
493
B
HOH
317
5
HOH
HOH
494
B
HOH
320
5
HOH
HOH
495
B
HOH
325
5
HOH
HOH
496
B
HOH
329
5
HOH
HOH
497
B
HOH
332
5
HOH
HOH
498
B
HOH
337
5
HOH
HOH
499
B
HOH
345
5
HOH
HOH
500
B
HOH
367
5
HOH
HOH
501
B
HOH
383
5
HOH
HOH
502
B
HOH
389
5
HOH
HOH
503
B
HOH
391
5
HOH
HOH
504
B
HOH
400
5
HOH
HOH
505
B
HOH
410
5
HOH
HOH
506
B
HOH
423
5
HOH
HOH
507
B
HOH
438
5
HOH
HOH
508
B
HOH
450
5
HOH
HOH
509
B
HOH
474
5
HOH
HOH
510
B
HOH
507
5
HOH
HOH
511
B
HOH
576
5
HOH
HOH
512
B
HOH
578
5
HOH
HOH
513
B
HOH
592
5
HOH
HOH
514
B
HOH
600
5
HOH
HOH
515
B
HOH
624
5
HOH
HOH
516
B
HOH
635
5
HOH
HOH
517
B
HOH
639
5
HOH
HOH
518
B
HOH
642
5
HOH
HOH
519
B
HOH
645
5
HOH
HOH
520
B
HOH
649
5
HOH
HOH
521
B
HOH
650
5
HOH
HOH
522
B
HOH
653
5
HOH
HOH
523
B
HOH
654
5
HOH
HOH
524
B
HOH
657
5
HOH
HOH
525
B
HOH
659
5
HOH
HOH
526
B
HOH
660
5
HOH
HOH
527
B
HOH
664
5
HOH
HOH
528
B
HOH
665
5
HOH
HOH
529
B
HOH
668
5
HOH
HOH
530
B
HOH
674
5
HOH
HOH
531
B
HOH
675
5
HOH
HOH
532
B
HOH
676
5
HOH
HOH
533
B
HOH
677
5
HOH
HOH
534
B
HOH
678
5
HOH
HOH
535
B
HOH
679
5
HOH
HOH
536
B
HOH
682
5
HOH
HOH
537
B
HOH
683
5
HOH
HOH
538
B
HOH
685
5
HOH
HOH
539
B
HOH
687
5
HOH
HOH
540
B
HOH
689
5
HOH
HOH
541
B
HOH
690
5
HOH
HOH
542
B
HOH
694
5
HOH
HOH
543
B
HOH
695
5
HOH
HOH
544
B
HOH
698
5
HOH
HOH
545
B
HOH
699
5
HOH
HOH
546
B
HOH
6
5
HOH
HOH
547
B
HOH
10
5
HOH
HOH
548
B
HOH
22
5
HOH
HOH
549
B
HOH
60
5
HOH
HOH
550
B
HOH
65
5
HOH
HOH
551
B
HOH
95
5
HOH
HOH
552
B
HOH
283
5
HOH
HOH
553
B
HOH
284
5
HOH
HOH
554
B
HOH
236
5
HOH
HOH
555
B
HOH
20
5
HOH
HOH
556
B
HOH
119
5
HOH
HOH
557
B
3.000
3.000
15.480
15.480
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
n
16
-5
A
n
17
-4
A
n
18
-3
A
n
19
-2
A
n
20
-1
A
n
21
0
A
n
22
1
A
n
23
2
A
n
24
3
A
n
25
4
A
n
26
5
A
n
27
6
A
n
28
7
A
n
29
8
A
n
30
9
A
n
31
10
A
n
32
11
A
n
33
12
A
n
34
13
A
n
35
14
A
n
36
15
A
n
37
16
A
n
38
17
A
n
39
18
A
n
40
19
A
n
41
20
A
n
42
21
A
n
43
22
A
n
44
23
A
n
45
24
A
n
46
25
A
n
47
26
A
n
48
27
A
n
49
28
A
n
50
29
A
n
51
30
A
n
52
31
A
n
53
32
A
n
54
33
A
n
55
34
A
GLU
35
n
56
GLU
35
A
LEU
36
n
57
LEU
36
A
SER
37
n
58
SER
37
A
PHE
38
n
59
PHE
38
A
GLY
39
n
60
GLY
39
A
ALA
40
n
61
ALA
40
A
ARG
41
n
62
ARG
41
A
ALA
42
n
63
ALA
42
A
GLU
43
n
64
GLU
43
A
LEU
44
n
65
LEU
44
A
PRO
45
n
66
PRO
45
A
ARG
46
n
67
ARG
46
A
ILE
47
n
68
ILE
47
A
HIS
48
n
69
HIS
48
A
PRO
49
n
70
PRO
49
A
VAL
50
n
71
VAL
50
A
ALA
51
n
72
ALA
51
A
SER
52
n
73
SER
52
A
LYS
53
n
74
LYS
53
A
LEU
54
n
75
LEU
54
A
LEU
55
n
76
LEU
55
A
ARG
56
n
77
ARG
56
A
LEU
57
n
78
LEU
57
A
MET
58
n
79
MET
58
A
GLN
59
n
80
GLN
59
A
LYS
60
n
81
LYS
60
A
LYS
61
n
82
LYS
61
A
GLU
62
n
83
GLU
62
A
THR
63
n
84
THR
63
A
ASN
64
n
85
ASN
64
A
LEU
65
n
86
LEU
65
A
CYS
66
n
87
CYS
66
A
LEU
67
n
88
LEU
67
A
SER
68
n
89
SER
68
A
ALA
69
n
90
ALA
69
A
ASP
70
n
91
ASP
70
A
VAL
71
n
92
VAL
71
A
SER
72
n
93
SER
72
A
LEU
73
n
94
LEU
73
A
ALA
74
n
95
ALA
74
A
ARG
75
n
96
ARG
75
A
GLU
76
n
97
GLU
76
A
LEU
77
n
98
LEU
77
A
LEU
78
n
99
LEU
78
A
GLN
79
n
100
GLN
79
A
LEU
80
n
101
LEU
80
A
ALA
81
n
102
ALA
81
A
ASP
82
n
103
ASP
82
A
ALA
83
n
104
ALA
83
A
LEU
84
n
105
LEU
84
A
GLY
85
n
106
GLY
85
A
PRO
86
n
107
PRO
86
A
SER
87
n
108
SER
87
A
ILE
88
n
109
ILE
88
A
CYS
89
n
110
CYS
89
A
MET
90
n
111
MET
90
A
LEU
91
n
112
LEU
91
A
LYS
92
n
113
LYS
92
A
THR
93
n
114
THR
93
A
HIS
94
n
115
HIS
94
A
VAL
95
n
116
VAL
95
A
ASP
96
n
117
ASP
96
A
ILE
97
n
118
ILE
97
A
LEU
98
n
119
LEU
98
A
ASN
99
n
120
ASN
99
A
ASP
100
n
121
ASP
100
A
PHE
101
n
122
PHE
101
A
THR
102
n
123
THR
102
A
LEU
103
n
124
LEU
103
A
ASP
104
n
125
ASP
104
A
VAL
105
n
126
VAL
105
A
MET
106
n
127
MET
106
A
LYS
107
n
128
LYS
107
A
GLU
108
n
129
GLU
108
A
LEU
109
n
130
LEU
109
A
ILE
110
n
131
ILE
110
A
THR
111
n
132
THR
111
A
LEU
112
n
133
LEU
112
A
ALA
113
n
134
ALA
113
A
LYS
114
n
135
LYS
114
A
CYS
115
n
136
CYS
115
A
HIS
116
n
137
HIS
116
A
GLU
117
n
138
GLU
117
A
PHE
118
n
139
PHE
118
A
LEU
119
n
140
LEU
119
A
ILE
120
n
141
ILE
120
A
PHE
121
n
142
PHE
121
A
GLU
122
n
143
GLU
122
A
ASP
123
n
144
ASP
123
A
ARG
124
n
145
ARG
124
A
LYS
125
n
146
LYS
125
A
PHE
126
n
147
PHE
126
A
ALA
127
n
148
ALA
127
A
ASP
128
n
149
ASP
128
A
ILE
129
n
150
ILE
129
A
GLY
130
n
151
GLY
130
A
ASN
131
n
152
ASN
131
A
THR
132
n
153
THR
132
A
VAL
133
n
154
VAL
133
A
LYS
134
n
155
LYS
134
A
LYS
135
n
156
LYS
135
A
GLN
136
n
157
GLN
136
A
TYR
137
n
158
TYR
137
A
GLU
138
n
159
GLU
138
A
GLY
139
n
160
GLY
139
A
GLY
140
n
161
GLY
140
A
ILE
141
n
162
ILE
141
A
PHE
142
n
163
PHE
142
A
LYS
143
n
164
LYS
143
A
ILE
144
n
165
ILE
144
A
ALA
145
n
166
ALA
145
A
SER
146
n
167
SER
146
A
TRP
147
n
168
TRP
147
A
ALA
148
n
169
ALA
148
A
ASP
149
n
170
ASP
149
A
LEU
150
n
171
LEU
150
A
VAL
151
n
172
VAL
151
A
ASN
152
n
173
ASN
152
A
ALA
153
n
174
ALA
153
A
HIS
154
n
175
HIS
154
A
VAL
155
n
176
VAL
155
A
VAL
156
n
177
VAL
156
A
PRO
157
n
178
PRO
157
A
GLY
158
n
179
GLY
158
A
SER
159
n
180
SER
159
A
GLY
160
n
181
GLY
160
A
VAL
161
n
182
VAL
161
A
VAL
162
n
183
VAL
162
A
LYS
163
n
184
LYS
163
A
GLY
164
n
185
GLY
164
A
LEU
165
n
186
LEU
165
A
GLN
166
n
187
GLN
166
A
GLU
167
n
188
GLU
167
A
VAL
168
n
189
VAL
168
A
GLY
169
n
190
GLY
169
A
LEU
170
n
191
LEU
170
A
PRO
171
n
192
PRO
171
A
LEU
172
n
193
LEU
172
A
HIS
173
n
194
HIS
173
A
ARG
174
n
195
ARG
174
A
GLY
175
n
196
GLY
175
A
CYS
176
n
197
CYS
176
A
LEU
177
n
198
LEU
177
A
LEU
178
n
199
LEU
178
A
ILE
179
n
200
ILE
179
A
ALA
180
n
201
ALA
180
A
GLU
181
n
202
GLU
181
A
MET
182
n
203
MET
182
A
SER
183
n
204
SER
183
A
SER
184
n
205
SER
184
A
THR
185
n
206
THR
185
A
GLY
186
n
207
GLY
186
A
SER
187
n
208
SER
187
A
LEU
188
n
209
LEU
188
A
ALA
189
n
210
ALA
189
A
THR
190
n
211
THR
190
A
GLY
191
n
212
GLY
191
A
ASP
192
n
213
ASP
192
A
TYR
193
n
214
TYR
193
A
THR
194
n
215
THR
194
A
ARG
195
n
216
ARG
195
A
ALA
196
n
217
ALA
196
A
ALA
197
n
218
ALA
197
A
VAL
198
n
219
VAL
198
A
ARG
199
n
220
ARG
199
A
MET
200
n
221
MET
200
A
ALA
201
n
222
ALA
201
A
GLU
202
n
223
GLU
202
A
GLU
203
n
224
GLU
203
A
HIS
204
n
225
HIS
204
A
SER
205
n
226
SER
205
A
GLU
206
n
227
GLU
206
A
PHE
207
n
228
PHE
207
A
VAL
208
n
229
VAL
208
A
VAL
209
n
230
VAL
209
A
GLY
210
n
231
GLY
210
A
PHE
211
n
232
PHE
211
A
ILE
212
n
233
ILE
212
A
SER
213
n
234
SER
213
A
GLY
214
n
235
GLY
214
A
SER
215
n
236
SER
215
A
ARG
216
n
237
ARG
216
A
VAL
217
n
238
VAL
217
A
SER
218
n
239
SER
218
A
MET
219
n
240
MET
219
A
LYS
220
n
241
LYS
220
A
PRO
221
n
242
PRO
221
A
GLU
222
n
243
GLU
222
A
PHE
223
n
244
PHE
223
A
LEU
224
n
245
LEU
224
A
HIS
225
n
246
HIS
225
A
LEU
226
n
247
LEU
226
A
THR
227
n
248
THR
227
A
PRO
228
n
249
PRO
228
A
GLY
229
n
250
GLY
229
A
VAL
230
n
251
VAL
230
A
GLN
231
n
252
GLN
231
A
LEU
232
n
253
LEU
232
A
GLU
233
n
254
GLU
233
A
ALA
234
n
255
ALA
234
A
GLY
235
n
256
GLY
235
A
GLY
236
n
257
GLY
236
A
ASP
237
n
258
ASP
237
A
ASN
238
n
259
ASN
238
A
LEU
239
n
260
LEU
239
A
GLY
240
n
261
GLY
240
A
GLN
241
n
262
GLN
241
A
GLN
242
n
263
GLN
242
A
TYR
243
n
264
TYR
243
A
ASN
244
n
265
ASN
244
A
SER
245
n
266
SER
245
A
PRO
246
n
267
PRO
246
A
GLN
247
n
268
GLN
247
A
GLU
248
n
269
GLU
248
A
VAL
249
n
270
VAL
249
A
ILE
250
n
271
ILE
250
A
GLY
251
n
272
GLY
251
A
LYS
252
n
273
LYS
252
A
ARG
253
n
274
ARG
253
A
GLY
254
n
275
GLY
254
A
SER
255
n
276
SER
255
A
ASP
256
n
277
ASP
256
A
ILE
257
n
278
ILE
257
A
ILE
258
n
279
ILE
258
A
ILE
259
n
280
ILE
259
A
VAL
260
n
281
VAL
260
A
GLY
261
n
282
GLY
261
A
ARG
262
n
283
ARG
262
A
GLY
263
n
284
GLY
263
A
ILE
264
n
285
ILE
264
A
ILE
265
n
286
ILE
265
A
SER
266
n
287
SER
266
A
ALA
267
n
288
ALA
267
A
ALA
268
n
289
ALA
268
A
ASP
269
n
290
ASP
269
A
ARG
270
n
291
ARG
270
A
LEU
271
n
292
LEU
271
A
GLU
272
n
293
GLU
272
A
ALA
273
n
294
ALA
273
A
ALA
274
n
295
ALA
274
A
GLU
275
n
296
GLU
275
A
MET
276
n
297
MET
276
A
TYR
277
n
298
TYR
277
A
ARG
278
n
299
ARG
278
A
LYS
279
n
300
LYS
279
A
ALA
280
n
301
ALA
280
A
ALA
281
n
302
ALA
281
A
TRP
282
n
303
TRP
282
A
GLU
283
n
304
GLU
283
A
ALA
284
n
305
ALA
284
A
TYR
285
n
306
TYR
285
A
LEU
286
n
307
LEU
286
A
SER
287
n
308
SER
287
A
ARG
288
n
309
ARG
288
A
LEU
289
n
310
LEU
289
A
GLY
290
n
311
GLY
290
A
n
312
291
A
n
1
-20
B
n
2
-19
B
n
3
-18
B
n
4
-17
B
n
5
-16
B
n
6
-15
B
n
7
-14
B
n
8
-13
B
n
9
-12
B
n
10
-11
B
n
11
-10
B
n
12
-9
B
n
13
-8
B
n
14
-7
B
n
15
-6
B
n
16
-5
B
n
17
-4
B
n
18
-3
B
n
19
-2
B
n
20
-1
B
n
21
0
B
n
22
1
B
n
23
2
B
n
24
3
B
n
25
4
B
n
26
5
B
n
27
6
B
n
28
7
B
n
29
8
B
n
30
9
B
n
31
10
B
n
32
11
B
n
33
12
B
n
34
13
B
n
35
14
B
n
36
15
B
n
37
16
B
n
38
17
B
n
39
18
B
n
40
19
B
n
41
20
B
n
42
21
B
n
43
22
B
n
44
23
B
n
45
24
B
n
46
25
B
n
47
26
B
n
48
27
B
n
49
28
B
n
50
29
B
n
51
30
B
n
52
31
B
n
53
32
B
n
54
33
B
n
55
34
B
GLU
35
n
56
GLU
35
B
LEU
36
n
57
LEU
36
B
SER
37
n
58
SER
37
B
PHE
38
n
59
PHE
38
B
GLY
39
n
60
GLY
39
B
ALA
40
n
61
ALA
40
B
ARG
41
n
62
ARG
41
B
ALA
42
n
63
ALA
42
B
GLU
43
n
64
GLU
43
B
LEU
44
n
65
LEU
44
B
PRO
45
n
66
PRO
45
B
ARG
46
n
67
ARG
46
B
ILE
47
n
68
ILE
47
B
HIS
48
n
69
HIS
48
B
PRO
49
n
70
PRO
49
B
VAL
50
n
71
VAL
50
B
ALA
51
n
72
ALA
51
B
SER
52
n
73
SER
52
B
LYS
53
n
74
LYS
53
B
LEU
54
n
75
LEU
54
B
LEU
55
n
76
LEU
55
B
ARG
56
n
77
ARG
56
B
LEU
57
n
78
LEU
57
B
MET
58
n
79
MET
58
B
GLN
59
n
80
GLN
59
B
LYS
60
n
81
LYS
60
B
LYS
61
n
82
LYS
61
B
GLU
62
n
83
GLU
62
B
THR
63
n
84
THR
63
B
ASN
64
n
85
ASN
64
B
LEU
65
n
86
LEU
65
B
CYS
66
n
87
CYS
66
B
LEU
67
n
88
LEU
67
B
SER
68
n
89
SER
68
B
ALA
69
n
90
ALA
69
B
ASP
70
n
91
ASP
70
B
VAL
71
n
92
VAL
71
B
SER
72
n
93
SER
72
B
LEU
73
n
94
LEU
73
B
ALA
74
n
95
ALA
74
B
ARG
75
n
96
ARG
75
B
GLU
76
n
97
GLU
76
B
LEU
77
n
98
LEU
77
B
LEU
78
n
99
LEU
78
B
GLN
79
n
100
GLN
79
B
LEU
80
n
101
LEU
80
B
ALA
81
n
102
ALA
81
B
ASP
82
n
103
ASP
82
B
ALA
83
n
104
ALA
83
B
LEU
84
n
105
LEU
84
B
GLY
85
n
106
GLY
85
B
PRO
86
n
107
PRO
86
B
SER
87
n
108
SER
87
B
ILE
88
n
109
ILE
88
B
CYS
89
n
110
CYS
89
B
MET
90
n
111
MET
90
B
LEU
91
n
112
LEU
91
B
LYS
92
n
113
LYS
92
B
THR
93
n
114
THR
93
B
HIS
94
n
115
HIS
94
B
VAL
95
n
116
VAL
95
B
ASP
96
n
117
ASP
96
B
ILE
97
n
118
ILE
97
B
LEU
98
n
119
LEU
98
B
ASN
99
n
120
ASN
99
B
ASP
100
n
121
ASP
100
B
PHE
101
n
122
PHE
101
B
THR
102
n
123
THR
102
B
LEU
103
n
124
LEU
103
B
ASP
104
n
125
ASP
104
B
VAL
105
n
126
VAL
105
B
MET
106
n
127
MET
106
B
LYS
107
n
128
LYS
107
B
GLU
108
n
129
GLU
108
B
LEU
109
n
130
LEU
109
B
ILE
110
n
131
ILE
110
B
THR
111
n
132
THR
111
B
LEU
112
n
133
LEU
112
B
ALA
113
n
134
ALA
113
B
LYS
114
n
135
LYS
114
B
CYS
115
n
136
CYS
115
B
HIS
116
n
137
HIS
116
B
GLU
117
n
138
GLU
117
B
PHE
118
n
139
PHE
118
B
LEU
119
n
140
LEU
119
B
ILE
120
n
141
ILE
120
B
PHE
121
n
142
PHE
121
B
GLU
122
n
143
GLU
122
B
ASP
123
n
144
ASP
123
B
ARG
124
n
145
ARG
124
B
LYS
125
n
146
LYS
125
B
PHE
126
n
147
PHE
126
B
ALA
127
n
148
ALA
127
B
ASP
128
n
149
ASP
128
B
ILE
129
n
150
ILE
129
B
GLY
130
n
151
GLY
130
B
ASN
131
n
152
ASN
131
B
THR
132
n
153
THR
132
B
VAL
133
n
154
VAL
133
B
LYS
134
n
155
LYS
134
B
LYS
135
n
156
LYS
135
B
GLN
136
n
157
GLN
136
B
TYR
137
n
158
TYR
137
B
GLU
138
n
159
GLU
138
B
GLY
139
n
160
GLY
139
B
GLY
140
n
161
GLY
140
B
ILE
141
n
162
ILE
141
B
PHE
142
n
163
PHE
142
B
LYS
143
n
164
LYS
143
B
ILE
144
n
165
ILE
144
B
ALA
145
n
166
ALA
145
B
SER
146
n
167
SER
146
B
TRP
147
n
168
TRP
147
B
ALA
148
n
169
ALA
148
B
ASP
149
n
170
ASP
149
B
LEU
150
n
171
LEU
150
B
VAL
151
n
172
VAL
151
B
ASN
152
n
173
ASN
152
B
ALA
153
n
174
ALA
153
B
HIS
154
n
175
HIS
154
B
VAL
155
n
176
VAL
155
B
VAL
156
n
177
VAL
156
B
PRO
157
n
178
PRO
157
B
GLY
158
n
179
GLY
158
B
SER
159
n
180
SER
159
B
GLY
160
n
181
GLY
160
B
VAL
161
n
182
VAL
161
B
VAL
162
n
183
VAL
162
B
LYS
163
n
184
LYS
163
B
GLY
164
n
185
GLY
164
B
LEU
165
n
186
LEU
165
B
GLN
166
n
187
GLN
166
B
GLU
167
n
188
GLU
167
B
VAL
168
n
189
VAL
168
B
GLY
169
n
190
GLY
169
B
LEU
170
n
191
LEU
170
B
PRO
171
n
192
PRO
171
B
LEU
172
n
193
LEU
172
B
HIS
173
n
194
HIS
173
B
ARG
174
n
195
ARG
174
B
GLY
175
n
196
GLY
175
B
CYS
176
n
197
CYS
176
B
LEU
177
n
198
LEU
177
B
LEU
178
n
199
LEU
178
B
ILE
179
n
200
ILE
179
B
ALA
180
n
201
ALA
180
B
GLU
181
n
202
GLU
181
B
MET
182
n
203
MET
182
B
SER
183
n
204
SER
183
B
SER
184
n
205
SER
184
B
THR
185
n
206
THR
185
B
GLY
186
n
207
GLY
186
B
SER
187
n
208
SER
187
B
LEU
188
n
209
LEU
188
B
ALA
189
n
210
ALA
189
B
THR
190
n
211
THR
190
B
GLY
191
n
212
GLY
191
B
ASP
192
n
213
ASP
192
B
TYR
193
n
214
TYR
193
B
THR
194
n
215
THR
194
B
ARG
195
n
216
ARG
195
B
ALA
196
n
217
ALA
196
B
ALA
197
n
218
ALA
197
B
VAL
198
n
219
VAL
198
B
ARG
199
n
220
ARG
199
B
MET
200
n
221
MET
200
B
ALA
201
n
222
ALA
201
B
GLU
202
n
223
GLU
202
B
GLU
203
n
224
GLU
203
B
HIS
204
n
225
HIS
204
B
SER
205
n
226
SER
205
B
GLU
206
n
227
GLU
206
B
PHE
207
n
228
PHE
207
B
VAL
208
n
229
VAL
208
B
VAL
209
n
230
VAL
209
B
GLY
210
n
231
GLY
210
B
PHE
211
n
232
PHE
211
B
ILE
212
n
233
ILE
212
B
SER
213
n
234
SER
213
B
GLY
214
n
235
GLY
214
B
SER
215
n
236
SER
215
B
ARG
216
n
237
ARG
216
B
VAL
217
n
238
VAL
217
B
SER
218
n
239
SER
218
B
MET
219
n
240
MET
219
B
LYS
220
n
241
LYS
220
B
PRO
221
n
242
PRO
221
B
GLU
222
n
243
GLU
222
B
PHE
223
n
244
PHE
223
B
LEU
224
n
245
LEU
224
B
HIS
225
n
246
HIS
225
B
LEU
226
n
247
LEU
226
B
THR
227
n
248
THR
227
B
PRO
228
n
249
PRO
228
B
GLY
229
n
250
GLY
229
B
VAL
230
n
251
VAL
230
B
GLN
231
n
252
GLN
231
B
LEU
232
n
253
LEU
232
B
GLU
233
n
254
GLU
233
B
ALA
234
n
255
ALA
234
B
GLY
235
n
256
GLY
235
B
GLY
236
n
257
GLY
236
B
ASP
237
n
258
ASP
237
B
ASN
238
n
259
ASN
238
B
LEU
239
n
260
LEU
239
B
GLY
240
n
261
GLY
240
B
GLN
241
n
262
GLN
241
B
GLN
242
n
263
GLN
242
B
TYR
243
n
264
TYR
243
B
ASN
244
n
265
ASN
244
B
SER
245
n
266
SER
245
B
PRO
246
n
267
PRO
246
B
GLN
247
n
268
GLN
247
B
GLU
248
n
269
GLU
248
B
VAL
249
n
270
VAL
249
B
ILE
250
n
271
ILE
250
B
GLY
251
n
272
GLY
251
B
LYS
252
n
273
LYS
252
B
ARG
253
n
274
ARG
253
B
GLY
254
n
275
GLY
254
B
SER
255
n
276
SER
255
B
ASP
256
n
277
ASP
256
B
ILE
257
n
278
ILE
257
B
ILE
258
n
279
ILE
258
B
ILE
259
n
280
ILE
259
B
VAL
260
n
281
VAL
260
B
GLY
261
n
282
GLY
261
B
ARG
262
n
283
ARG
262
B
GLY
263
n
284
GLY
263
B
ILE
264
n
285
ILE
264
B
ILE
265
n
286
ILE
265
B
SER
266
n
287
SER
266
B
ALA
267
n
288
ALA
267
B
ALA
268
n
289
ALA
268
B
ASP
269
n
290
ASP
269
B
ARG
270
n
291
ARG
270
B
LEU
271
n
292
LEU
271
B
GLU
272
n
293
GLU
272
B
ALA
273
n
294
ALA
273
B
ALA
274
n
295
ALA
274
B
GLU
275
n
296
GLU
275
B
MET
276
n
297
MET
276
B
TYR
277
n
298
TYR
277
B
ARG
278
n
299
ARG
278
B
LYS
279
n
300
LYS
279
B
ALA
280
n
301
ALA
280
B
ALA
281
n
302
ALA
281
B
TRP
282
n
303
TRP
282
B
GLU
283
n
304
GLU
283
B
ALA
284
n
305
ALA
284
B
TYR
285
n
306
TYR
285
B
LEU
286
n
307
LEU
286
B
SER
287
n
308
SER
287
B
ARG
288
n
309
ARG
288
B
LEU
289
n
310
LEU
289
B
GLY
290
n
311
GLY
290
B
n
312
291
B
author_and_software_defined_assembly
PISA
2
dimeric
5310
-25
18190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
67
A
N
LEU
88
A
O
LYS
92
A
O
LYS
113
A
N
THR
93
A
N
THR
114
A
O
ASP
123
A
O
ASP
144
A
N
PHE
126
A
N
PHE
147
A
O
HIS
154
A
O
HIS
175
A
N
ALA
153
A
N
ALA
174
A
O
ILE
179
A
O
ILE
200
A
N
CYS
176
A
N
CYS
197
A
O
VAL
209
A
O
VAL
230
A
N
VAL
209
A
N
VAL
230
A
O
LEU
224
A
O
LEU
245
A
N
THR
227
A
N
THR
248
A
O
ILE
259
A
O
ILE
280
A
O
ILE
258
A
O
ILE
279
A
N
CYS
66
A
N
CYS
87
A
N
GLY
235
A
N
GLY
256
A
O
TYR
243
A
O
TYR
264
B
N
LEU
67
B
N
LEU
88
B
O
LYS
92
B
O
LYS
113
B
N
THR
93
B
N
THR
114
B
O
ASP
123
B
O
ASP
144
B
N
PHE
126
B
N
PHE
147
B
O
HIS
154
B
O
HIS
175
B
N
VAL
151
B
N
VAL
172
B
O
LEU
177
B
O
LEU
198
B
N
LEU
178
B
N
LEU
199
B
O
GLY
210
B
O
GLY
231
B
N
PHE
211
B
N
PHE
232
B
O
LEU
224
B
O
LEU
245
B
N
THR
227
B
N
THR
248
B
O
ILE
259
B
O
ILE
280
B
O
ILE
258
B
O
ILE
279
B
N
CYS
66
B
N
CYS
87
1
A
MET
-20
A
MET
1
1
Y
1
A
GLY
-19
A
GLY
2
1
Y
1
A
SER
-18
A
SER
3
1
Y
1
A
SER
-17
A
SER
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
HIS
-12
A
HIS
9
1
Y
1
A
HIS
-11
A
HIS
10
1
Y
1
A
SER
-10
A
SER
11
1
Y
1
A
SER
-9
A
SER
12
1
Y
1
A
GLY
-8
A
GLY
13
1
Y
1
A
LEU
-7
A
LEU
14
1
Y
1
A
VAL
-6
A
VAL
15
1
Y
1
A
PRO
-5
A
PRO
16
1
Y
1
A
ARG
-4
A
ARG
17
1
Y
1
A
GLY
-3
A
GLY
18
1
Y
1
A
SER
-2
A
SER
19
1
Y
1
A
HIS
-1
A
HIS
20
1
Y
1
A
MET
0
A
MET
21
1
Y
1
A
ASP
1
A
ASP
22
1
Y
1
A
ALA
2
A
ALA
23
1
Y
1
A
GLU
3
A
GLU
24
1
Y
1
A
THR
4
A
THR
25
1
Y
1
A
VAL
5
A
VAL
26
1
Y
1
A
GLY
6
A
GLY
27
1
Y
1
A
ARG
7
A
ARG
28
1
Y
1
A
VAL
8
A
VAL
29
1
Y
1
A
LYS
9
A
LYS
30
1
Y
1
A
ARG
10
A
ARG
31
1
Y
1
A
PHE
11
A
PHE
32
1
Y
1
A
ILE
12
A
ILE
33
1
Y
1
A
GLN
13
A
GLN
34
1
Y
1
A
GLU
14
A
GLU
35
1
Y
1
A
ASN
15
A
ASN
36
1
Y
1
A
VAL
16
A
VAL
37
1
Y
1
A
PHE
17
A
PHE
38
1
Y
1
A
VAL
18
A
VAL
39
1
Y
1
A
ALA
19
A
ALA
40
1
Y
1
A
ALA
20
A
ALA
41
1
Y
1
A
ASN
21
A
ASN
42
1
Y
1
A
HIS
22
A
HIS
43
1
Y
1
A
ASN
23
A
ASN
44
1
Y
1
A
GLY
24
A
GLY
45
1
Y
1
A
SER
25
A
SER
46
1
Y
1
A
PRO
26
A
PRO
47
1
Y
1
A
LEU
27
A
LEU
48
1
Y
1
A
SER
28
A
SER
49
1
Y
1
A
ILE
29
A
ILE
50
1
Y
1
A
LYS
30
A
LYS
51
1
Y
1
A
GLU
31
A
GLU
52
1
Y
1
A
ALA
32
A
ALA
53
1
Y
1
A
PRO
33
A
PRO
54
1
Y
1
A
LYS
34
A
LYS
55
1
Y
1
A
VAL
291
A
VAL
312
1
Y
1
B
MET
-20
B
MET
1
1
Y
1
B
GLY
-19
B
GLY
2
1
Y
1
B
SER
-18
B
SER
3
1
Y
1
B
SER
-17
B
SER
4
1
Y
1
B
HIS
-16
B
HIS
5
1
Y
1
B
HIS
-15
B
HIS
6
1
Y
1
B
HIS
-14
B
HIS
7
1
Y
1
B
HIS
-13
B
HIS
8
1
Y
1
B
HIS
-12
B
HIS
9
1
Y
1
B
HIS
-11
B
HIS
10
1
Y
1
B
SER
-10
B
SER
11
1
Y
1
B
SER
-9
B
SER
12
1
Y
1
B
GLY
-8
B
GLY
13
1
Y
1
B
LEU
-7
B
LEU
14
1
Y
1
B
VAL
-6
B
VAL
15
1
Y
1
B
PRO
-5
B
PRO
16
1
Y
1
B
ARG
-4
B
ARG
17
1
Y
1
B
GLY
-3
B
GLY
18
1
Y
1
B
SER
-2
B
SER
19
1
Y
1
B
HIS
-1
B
HIS
20
1
Y
1
B
MET
0
B
MET
21
1
Y
1
B
ASP
1
B
ASP
22
1
Y
1
B
ALA
2
B
ALA
23
1
Y
1
B
GLU
3
B
GLU
24
1
Y
1
B
THR
4
B
THR
25
1
Y
1
B
VAL
5
B
VAL
26
1
Y
1
B
GLY
6
B
GLY
27
1
Y
1
B
ARG
7
B
ARG
28
1
Y
1
B
VAL
8
B
VAL
29
1
Y
1
B
LYS
9
B
LYS
30
1
Y
1
B
ARG
10
B
ARG
31
1
Y
1
B
PHE
11
B
PHE
32
1
Y
1
B
ILE
12
B
ILE
33
1
Y
1
B
GLN
13
B
GLN
34
1
Y
1
B
GLU
14
B
GLU
35
1
Y
1
B
ASN
15
B
ASN
36
1
Y
1
B
VAL
16
B
VAL
37
1
Y
1
B
PHE
17
B
PHE
38
1
Y
1
B
VAL
18
B
VAL
39
1
Y
1
B
ALA
19
B
ALA
40
1
Y
1
B
ALA
20
B
ALA
41
1
Y
1
B
ASN
21
B
ASN
42
1
Y
1
B
HIS
22
B
HIS
43
1
Y
1
B
ASN
23
B
ASN
44
1
Y
1
B
GLY
24
B
GLY
45
1
Y
1
B
SER
25
B
SER
46
1
Y
1
B
PRO
26
B
PRO
47
1
Y
1
B
LEU
27
B
LEU
48
1
Y
1
B
SER
28
B
SER
49
1
Y
1
B
ILE
29
B
ILE
50
1
Y
1
B
LYS
30
B
LYS
51
1
Y
1
B
GLU
31
B
GLU
52
1
Y
1
B
ALA
32
B
ALA
53
1
Y
1
B
PRO
33
B
PRO
54
1
Y
1
B
LYS
34
B
LYS
55
1
Y
1
B
VAL
291
B
VAL
312
1
Y
1
A
A
CD1
O
ILE
HOH
97
511
2.18
B
1
A
GLU
117
67.70
74.47
1
A
ALA
127
-155.98
29.28
1
A
LYS
143
37.07
57.57
1
A
ASP
237
-116.16
-168.59
1
B
GLU
117
65.33
74.38
1
B
ALA
127
-157.82
28.80
56.980
17.8707
2.000
0.1200
0.0000
0.7500
-0.4500
0.0000
0.9300
0.9660
0.9560
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.186
0.161
0.161
0.162
1.7500
64.9700
2715
50805
5.1000
96.3900
0.1763
0.1550
1.000
0.350
0.8915
1.8280
0.0590
0.1059
0.0988
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1060
0.0990
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
1.7500
64.9700
300
4318
102
0
3916
0.016
0.022
4173
1.592
2.003
5653
6.148
5.000
539
35.619
23.772
167
12.645
15.000
746
13.748
15.000
29
0.116
0.200
654
0.007
0.021
3044
0.796
1.500
2579
1.529
2.000
4142
2.882
3.000
1594
4.856
4.500
1498
0.3380
0.2820
1.7950
201
3570
3771
20
92.6800
1.750
50.000
4HKP
53546
0.041
1.008
1
16.800
4.000
96.400
0.248
1.750
1.810
5095
1.094
1
3.400
92.700
0.207
1.810
1.890
5207
1.151
1
3.800
94.300
0.152
1.890
1.970
5231
1.125
1
4.100
94.700
0.115
1.970
2.070
5275
1.107
1
4.100
95.400
0.086
2.070
2.200
5320
1.047
1
4.200
95.700
0.071
2.200
2.380
5368
1.057
1
4.200
97.100
0.052
2.380
2.610
5421
0.987
1
4.200
98.100
0.038
2.610
2.990
5486
0.869
1
4.200
98.600
0.024
2.990
3.770
5547
0.795
1
4.200
99.300
0.022
3.770
50.000
5596
0.923
1
4.100
98.200
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N3-oxide
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
2
N
N
2
N
N
2
N
N
3
N
N
5
N
N
5
N
N
A
SER
37
A
SER
58
HELX_P
A
ALA
42
A
ALA
63
1
1
6
A
HIS
48
A
HIS
69
HELX_P
A
GLU
62
A
GLU
83
1
2
15
A
LEU
73
A
LEU
94
HELX_P
A
GLY
85
A
GLY
106
1
3
13
A
PRO
86
A
PRO
107
HELX_P
A
ILE
88
A
ILE
109
5
4
3
A
HIS
94
A
HIS
115
HELX_P
A
LEU
98
A
LEU
119
5
5
5
A
THR
102
A
THR
123
HELX_P
A
GLU
117
A
GLU
138
1
6
16
A
ILE
129
A
ILE
150
HELX_P
A
GLY
139
A
GLY
160
1
7
11
A
LYS
143
A
LYS
164
HELX_P
A
TRP
147
A
TRP
168
5
8
5
A
SER
159
A
SER
180
HELX_P
A
LEU
170
A
LEU
191
1
9
12
A
THR
190
A
THR
211
HELX_P
A
HIS
204
A
HIS
225
1
10
15
A
SER
245
A
SER
266
HELX_P
A
LYS
252
A
LYS
273
1
11
8
A
GLY
261
A
GLY
282
HELX_P
A
SER
266
A
SER
287
1
12
6
A
ASP
269
A
ASP
290
HELX_P
A
GLY
290
A
GLY
311
1
13
22
B
SER
37
B
SER
58
HELX_P
B
ALA
42
B
ALA
63
1
14
6
B
HIS
48
B
HIS
69
HELX_P
B
GLU
62
B
GLU
83
1
15
15
B
LEU
73
B
LEU
94
HELX_P
B
GLY
85
B
GLY
106
1
16
13
B
PRO
86
B
PRO
107
HELX_P
B
ILE
88
B
ILE
109
5
17
3
B
HIS
94
B
HIS
115
HELX_P
B
LEU
98
B
LEU
119
5
18
5
B
THR
102
B
THR
123
HELX_P
B
GLU
117
B
GLU
138
1
19
16
B
ILE
129
B
ILE
150
HELX_P
B
GLY
139
B
GLY
160
1
20
11
B
LYS
143
B
LYS
164
HELX_P
B
TRP
147
B
TRP
168
5
21
5
B
SER
159
B
SER
180
HELX_P
B
LEU
170
B
LEU
191
1
22
12
B
THR
190
B
THR
211
HELX_P
B
HIS
204
B
HIS
225
1
23
15
B
SER
245
B
SER
266
HELX_P
B
GLY
251
B
GLY
272
1
24
7
B
GLY
261
B
GLY
282
HELX_P
B
SER
266
B
SER
287
1
25
6
B
ASP
269
B
ASP
290
HELX_P
B
GLY
290
B
GLY
311
1
26
22
LYASE/LYASE INHIBITOR
Alpha-Beta Barrel, decarboxylase, LYASE-LYASE INHIBITOR complex
UMPS_HUMAN
UNP
1
190
P11172
DAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQL
ADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSG
VVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPEFLHLTPGVQLEAGGDNLG
QQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
190
480
4HKP
1
291
P11172
A
1
22
312
190
480
4HKP
1
291
P11172
B
1
22
312
1
expression tag
MET
-20
4HKP
A
P11172
UNP
1
1
expression tag
GLY
-19
4HKP
A
P11172
UNP
2
1
expression tag
SER
-18
4HKP
A
P11172
UNP
3
1
expression tag
SER
-17
4HKP
A
P11172
UNP
4
1
expression tag
HIS
-16
4HKP
A
P11172
UNP
5
1
expression tag
HIS
-15
4HKP
A
P11172
UNP
6
1
expression tag
HIS
-14
4HKP
A
P11172
UNP
7
1
expression tag
HIS
-13
4HKP
A
P11172
UNP
8
1
expression tag
HIS
-12
4HKP
A
P11172
UNP
9
1
expression tag
HIS
-11
4HKP
A
P11172
UNP
10
1
expression tag
SER
-10
4HKP
A
P11172
UNP
11
1
expression tag
SER
-9
4HKP
A
P11172
UNP
12
1
expression tag
GLY
-8
4HKP
A
P11172
UNP
13
1
expression tag
LEU
-7
4HKP
A
P11172
UNP
14
1
expression tag
VAL
-6
4HKP
A
P11172
UNP
15
1
expression tag
PRO
-5
4HKP
A
P11172
UNP
16
1
expression tag
ARG
-4
4HKP
A
P11172
UNP
17
1
expression tag
GLY
-3
4HKP
A
P11172
UNP
18
1
expression tag
SER
-2
4HKP
A
P11172
UNP
19
1
expression tag
HIS
-1
4HKP
A
P11172
UNP
20
1
expression tag
MET
0
4HKP
A
P11172
UNP
21
2
expression tag
MET
-20
4HKP
B
P11172
UNP
1
2
expression tag
GLY
-19
4HKP
B
P11172
UNP
2
2
expression tag
SER
-18
4HKP
B
P11172
UNP
3
2
expression tag
SER
-17
4HKP
B
P11172
UNP
4
2
expression tag
HIS
-16
4HKP
B
P11172
UNP
5
2
expression tag
HIS
-15
4HKP
B
P11172
UNP
6
2
expression tag
HIS
-14
4HKP
B
P11172
UNP
7
2
expression tag
HIS
-13
4HKP
B
P11172
UNP
8
2
expression tag
HIS
-12
4HKP
B
P11172
UNP
9
2
expression tag
HIS
-11
4HKP
B
P11172
UNP
10
2
expression tag
SER
-10
4HKP
B
P11172
UNP
11
2
expression tag
SER
-9
4HKP
B
P11172
UNP
12
2
expression tag
GLY
-8
4HKP
B
P11172
UNP
13
2
expression tag
LEU
-7
4HKP
B
P11172
UNP
14
2
expression tag
VAL
-6
4HKP
B
P11172
UNP
15
2
expression tag
PRO
-5
4HKP
B
P11172
UNP
16
2
expression tag
ARG
-4
4HKP
B
P11172
UNP
17
2
expression tag
GLY
-3
4HKP
B
P11172
UNP
18
2
expression tag
SER
-2
4HKP
B
P11172
UNP
19
2
expression tag
HIS
-1
4HKP
B
P11172
UNP
20
2
expression tag
MET
0
4HKP
B
P11172
UNP
21
9
2
9
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
65
A
LEU
86
A
SER
68
A
SER
89
A
MET
90
A
MET
111
A
THR
93
A
THR
114
A
LEU
119
A
LEU
140
A
PHE
126
A
PHE
147
A
LEU
150
A
LEU
171
A
HIS
154
A
HIS
175
A
GLY
175
A
GLY
196
A
ILE
179
A
ILE
200
A
VAL
208
A
VAL
229
A
ILE
212
A
ILE
233
A
LEU
224
A
LEU
245
A
THR
227
A
THR
248
A
ILE
257
A
ILE
278
A
VAL
260
A
VAL
281
A
LEU
65
A
LEU
86
A
SER
68
A
SER
89
A
GLY
235
A
GLY
256
A
GLY
236
A
GLY
257
A
GLN
242
A
GLN
263
A
TYR
243
A
TYR
264
B
LEU
65
B
LEU
86
B
SER
68
B
SER
89
B
MET
90
B
MET
111
B
THR
93
B
THR
114
B
LEU
119
B
LEU
140
B
PHE
126
B
PHE
147
B
LEU
150
B
LEU
171
B
HIS
154
B
HIS
175
B
GLY
175
B
GLY
196
B
ILE
179
B
ILE
200
B
VAL
208
B
VAL
229
B
ILE
212
B
ILE
233
B
LEU
224
B
LEU
245
B
THR
227
B
THR
248
B
ILE
257
B
ILE
278
B
VAL
260
B
VAL
281
B
LEU
65
B
LEU
86
B
SER
68
B
SER
89
BINDING SITE FOR RESIDUE GOL A 301
A
GOL
301
Software
7
BINDING SITE FOR RESIDUE GOL A 302
A
GOL
302
Software
4
BINDING SITE FOR RESIDUE GOL A 303
A
GOL
303
Software
5
BINDING SITE FOR RESIDUE TKW A 304
A
TKW
304
Software
22
BINDING SITE FOR RESIDUE 16B A 305
A
16B
305
Software
21
BINDING SITE FOR RESIDUE GOL B 301
B
GOL
301
Software
7
BINDING SITE FOR RESIDUE GOL B 302
B
GOL
302
Software
4
BINDING SITE FOR RESIDUE GOL B 303
B
GOL
303
Software
4
BINDING SITE FOR RESIDUE TKW B 304
B
TKW
304
Software
22
A
LYS
53
A
LYS
74
7
1_555
A
PHE
118
A
PHE
139
7
1_555
A
LEU
119
A
LEU
140
7
1_555
A
ASP
149
A
ASP
170
7
1_555
A
GOL
302
D
GOL
7
1_555
A
HOH
435
L
HOH
7
1_555
A
HOH
504
L
HOH
7
1_555
A
SER
146
A
SER
167
4
1_555
A
ARG
174
A
ARG
195
4
1_555
A
GOL
301
C
GOL
4
1_555
A
HOH
435
L
HOH
4
1_555
A
LYS
61
A
LYS
82
5
1_555
A
PRO
86
A
PRO
107
5
1_555
A
GLU
275
A
GLU
296
5
1_555
A
ARG
278
A
ARG
299
5
1_555
A
HOH
493
L
HOH
5
1_555
A
SER
68
A
SER
89
22
1_555
A
ASP
70
A
ASP
91
22
1_555
A
LYS
92
A
LYS
113
22
1_555
A
HIS
94
A
HIS
115
22
1_555
A
ASP
123
A
ASP
144
22
1_555
A
LYS
125
A
LYS
146
22
1_555
A
MET
182
A
MET
203
22
1_555
A
SER
183
A
SER
204
22
1_555
A
ILE
212
A
ILE
233
22
1_555
A
PRO
228
A
PRO
249
22
1_555
A
GLN
241
A
GLN
262
22
1_555
A
TYR
243
A
TYR
264
22
1_555
A
GLY
261
A
GLY
282
22
1_555
A
ARG
262
A
ARG
283
22
1_555
A
HOH
413
L
HOH
22
1_555
A
HOH
414
L
HOH
22
1_555
A
HOH
415
L
HOH
22
1_555
A
HOH
462
L
HOH
22
1_555
A
HOH
468
L
HOH
22
1_555
B
ASP
128
B
ASP
149
22
1_555
B
ILE
129
B
ILE
150
22
1_555
B
THR
132
B
THR
153
22
1_555
A
SER
68
A
SER
89
21
1_555
A
ASP
70
A
ASP
91
21
1_555
A
LYS
92
A
LYS
113
21
1_555
A
HIS
94
A
HIS
115
21
1_555
A
ASP
123
A
ASP
144
21
1_555
A
LYS
125
A
LYS
146
21
1_555
A
GLU
181
A
GLU
202
21
1_555
A
MET
182
A
MET
203
21
1_555
A
SER
183
A
SER
204
21
1_555
A
PRO
228
A
PRO
249
21
1_555
A
GLN
241
A
GLN
262
21
1_555
A
TYR
243
A
TYR
264
21
1_555
A
GLY
261
A
GLY
282
21
1_555
A
ARG
262
A
ARG
283
21
1_555
A
HOH
413
L
HOH
21
1_555
A
HOH
414
L
HOH
21
1_555
A
HOH
415
L
HOH
21
1_555
A
HOH
502
L
HOH
21
1_555
B
ASP
128
B
ASP
149
21
1_555
B
ILE
129
B
ILE
150
21
1_555
B
THR
132
B
THR
153
21
1_555
B
LYS
53
B
LYS
74
7
1_555
B
ALA
113
B
ALA
134
7
1_555
B
LYS
114
B
LYS
135
7
1_555
B
PHE
118
B
PHE
139
7
1_555
B
LEU
119
B
LEU
140
7
1_555
B
ASP
149
B
ASP
170
7
1_555
B
HOH
522
M
HOH
7
1_555
B
LEU
232
B
LEU
253
4
1_555
B
ALA
234
B
ALA
255
4
1_555
B
HOH
458
M
HOH
4
1_555
B
HOH
512
M
HOH
4
1_555
B
SER
37
B
SER
58
4
1_555
B
GLN
59
B
GLN
80
4
1_555
B
TYR
285
B
TYR
306
4
1_555
B
LEU
286
B
LEU
307
4
1_555
A
ASP
128
A
ASP
149
22
1_555
A
ILE
129
A
ILE
150
22
1_555
A
THR
132
A
THR
153
22
1_555
B
SER
68
B
SER
89
22
1_555
B
ASP
70
B
ASP
91
22
1_555
B
LYS
92
B
LYS
113
22
1_555
B
HIS
94
B
HIS
115
22
1_555
B
LYS
125
B
LYS
146
22
1_555
B
MET
182
B
MET
203
22
1_555
B
SER
183
B
SER
204
22
1_555
B
ILE
212
B
ILE
233
22
1_555
B
PRO
228
B
PRO
249
22
1_555
B
GLN
231
B
GLN
252
22
1_555
B
GLN
241
B
GLN
262
22
1_555
B
TYR
243
B
TYR
264
22
1_555
B
GLY
261
B
GLY
282
22
1_555
B
ARG
262
B
ARG
283
22
1_555
B
HOH
401
M
HOH
22
1_555
B
HOH
404
M
HOH
22
1_555
B
HOH
420
M
HOH
22
1_555
B
HOH
421
M
HOH
22
1_555
B
HOH
482
M
HOH
22
1_555
4
P 1 21 1