0.013596 0.007850 0.000000 0.000000 0.015700 0.000000 0.000000 0.000000 0.008850 0.00000 0.00000 0.00000 Gazdag, E.M. Gavriljuk, K. Itzen, A. Koetting, C. Gerwert, K. Goody, R.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 73.550 73.550 113.000 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Be F3 -1 66.007 BERYLLIUM TRIFLUORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N BE N 82 N F N 83 N F N 84 N F N 85 N N N 86 R C N 87 N C N 88 N O N 89 N C N 90 N S N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N O N 107 N N N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N O N 127 N O N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 N C N 140 N C N 141 N O N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C Y 153 N C Y 154 N N Y 155 N C Y 156 N C Y 157 N N N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N O N 170 N H N 171 N H N 172 N N N 173 S C N 174 N C N 175 N O N 176 S C N 177 N C N 178 N C N 179 N C N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N N N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N S N 248 N C N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 R C N 320 N O N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N N Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C N 370 N O N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 109 21348 21353 10.1073/pnas.1214431110 23236136 Catalytic mechanism of a mammalian Rab-RabGAP complex in atomic detail. 2012 10.2210/pdb4hl4/pdb pdb_00004hl4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 PIXEL 2011-10-09 PSI PILATUS 6M PIXEL 2011-10-30 PSI PILATUS 6M Si(111) CHANNEL SINGLE WAVELENGTH M x-ray 1 Si(111) CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 0.9786 1.0 X10SA SLS 0.9793 SYNCHROTRON SLS BEAMLINE X10SA X10SA SLS 0.9786 SYNCHROTRON SLS BEAMLINE X10SA 33689.727 TBC1 domain family member 20 UNP RESIDUES 14-305 1 man polymer 66.007 BERYLLIUM TRIFLUORIDE ION 1 syn non-polymer 59.044 ACETATE ION 2 syn non-polymer 18.015 water 45 nat water no no GHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMS KDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH LRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYF AAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPS GHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMS KDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH LRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYF AAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TBC1D20, C20orf140 9606 Homo sapiens 562 Escherichia coli 1 2.62 53.03 VAPOR DIFFUSION, HANGING DROP 4.5 0.1M sodium acetate pH 4.5, 0.8M di-potassium hydrogen phospate, 0.8M sodium dihydrogen phosphate, 0.025M beryllium fluoride, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K 277.0 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Data collection Database references Derived calculations 1 0 2013-01-16 1 1 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-10-16 REL REL BEF BERYLLIUM TRIFLUORIDE ION ACT ACETATE ION HOH water BEF 1 2 BEF BEF 401 A ACT 1 3 ACT ACT 402 A ACT 2 3 ACT ACT 403 A HOH 1 4 HOH HOH 501 A HOH 2 4 HOH HOH 502 A HOH 3 4 HOH HOH 503 A HOH 4 4 HOH HOH 504 A HOH 5 4 HOH HOH 505 A HOH 6 4 HOH HOH 506 A HOH 7 4 HOH HOH 507 A HOH 8 4 HOH HOH 508 A HOH 9 4 HOH HOH 509 A HOH 10 4 HOH HOH 510 A HOH 11 4 HOH HOH 511 A HOH 12 4 HOH HOH 512 A HOH 13 4 HOH HOH 513 A HOH 14 4 HOH HOH 514 A HOH 15 4 HOH HOH 515 A HOH 16 4 HOH HOH 516 A HOH 17 4 HOH HOH 517 A HOH 18 4 HOH HOH 518 A HOH 19 4 HOH HOH 519 A HOH 20 4 HOH HOH 520 A HOH 21 4 HOH HOH 521 A HOH 22 4 HOH HOH 522 A HOH 23 4 HOH HOH 523 A HOH 24 4 HOH HOH 524 A HOH 25 4 HOH HOH 525 A HOH 26 4 HOH HOH 526 A HOH 27 4 HOH HOH 527 A HOH 28 4 HOH HOH 528 A HOH 29 4 HOH HOH 529 A HOH 30 4 HOH HOH 530 A HOH 31 4 HOH HOH 531 A HOH 32 4 HOH HOH 532 A HOH 33 4 HOH HOH 533 A HOH 34 4 HOH HOH 534 A HOH 35 4 HOH HOH 535 A HOH 36 4 HOH HOH 536 A HOH 37 4 HOH HOH 537 A HOH 38 4 HOH HOH 538 A HOH 39 4 HOH HOH 539 A HOH 40 4 HOH HOH 540 A HOH 41 4 HOH HOH 541 A HOH 42 4 HOH HOH 542 A HOH 43 4 HOH HOH 543 A HOH 44 4 HOH HOH 544 A HOH 45 4 HOH HOH 545 A n 1 14 A n 2 15 A n 3 16 A n 4 17 A n 5 18 A n 6 19 A n 7 20 A n 8 21 A n 9 22 A n 10 23 A n 11 24 A PHE 25 n 12 PHE 25 A ASN 26 n 13 ASN 26 A ALA 27 n 14 ALA 27 A LYS 28 n 15 LYS 28 A ARG 29 n 16 ARG 29 A LYS 30 n 17 LYS 30 A LYS 31 n 18 LYS 31 A LYS 32 n 19 LYS 32 A VAL 33 n 20 VAL 33 A ALA 34 n 21 ALA 34 A GLU 35 n 22 GLU 35 A ILE 36 n 23 ILE 36 A HIS 37 n 24 HIS 37 A GLN 38 n 25 GLN 38 A ALA 39 n 26 ALA 39 A LEU 40 n 27 LEU 40 A ASN 41 n 28 ASN 41 A SER 42 n 29 SER 42 A ASP 43 n 30 ASP 43 A PRO 44 n 31 PRO 44 A THR 45 n 32 THR 45 A ASP 46 n 33 ASP 46 A VAL 47 n 34 VAL 47 A ALA 48 n 35 ALA 48 A ALA 49 n 36 ALA 49 A LEU 50 n 37 LEU 50 A ARG 51 n 38 ARG 51 A ARG 52 n 39 ARG 52 A MET 53 n 40 MET 53 A ALA 54 n 41 ALA 54 A ILE 55 n 42 ILE 55 A SER 56 n 43 SER 56 A GLU 57 n 44 GLU 57 A GLY 58 n 45 GLY 58 A GLY 59 n 46 GLY 59 A LEU 60 n 47 LEU 60 A LEU 61 n 48 LEU 61 A THR 62 n 49 THR 62 A ASP 63 n 50 ASP 63 A GLU 64 n 51 GLU 64 A ILE 65 n 52 ILE 65 A ARG 66 n 53 ARG 66 A ARG 67 n 54 ARG 67 A LYS 68 n 55 LYS 68 A VAL 69 n 56 VAL 69 A TRP 70 n 57 TRP 70 A PRO 71 n 58 PRO 71 A LYS 72 n 59 LYS 72 A LEU 73 n 60 LEU 73 A LEU 74 n 61 LEU 74 A ASN 75 n 62 ASN 75 A VAL 76 n 63 VAL 76 A ASN 77 n 64 ASN 77 A ALA 78 n 65 ALA 78 A ASN 79 n 66 ASN 79 A ASP 80 n 67 ASP 80 A PRO 81 n 68 PRO 81 A PRO 82 n 69 PRO 82 A PRO 83 n 70 PRO 83 A ILE 84 n 71 ILE 84 A SER 85 n 72 SER 85 A GLY 86 n 73 GLY 86 A LYS 87 n 74 LYS 87 A ASN 88 n 75 ASN 88 A LEU 89 n 76 LEU 89 A ARG 90 n 77 ARG 90 A GLN 91 n 78 GLN 91 A MET 92 n 79 MET 92 A SER 93 n 80 SER 93 A LYS 94 n 81 LYS 94 A ASP 95 n 82 ASP 95 A TYR 96 n 83 TYR 96 A GLN 97 n 84 GLN 97 A GLN 98 n 85 GLN 98 A VAL 99 n 86 VAL 99 A LEU 100 n 87 LEU 100 A LEU 101 n 88 LEU 101 A ASP 102 n 89 ASP 102 A VAL 103 n 90 VAL 103 A ARG 104 n 91 ARG 104 A ARG 105 n 92 ARG 105 A SER 106 n 93 SER 106 A LEU 107 n 94 LEU 107 A ARG 108 n 95 ARG 108 A ARG 109 n 96 ARG 109 A PHE 110 n 97 PHE 110 A PRO 111 n 98 PRO 111 A PRO 112 n 99 PRO 112 A GLY 113 n 100 GLY 113 A MET 114 n 101 MET 114 A PRO 115 n 102 PRO 115 A GLU 116 n 103 GLU 116 A GLU 117 n 104 GLU 117 A GLN 118 n 105 GLN 118 A ARG 119 n 106 ARG 119 A GLU 120 n 107 GLU 120 A GLY 121 n 108 GLY 121 A LEU 122 n 109 LEU 122 A GLN 123 n 110 GLN 123 A GLU 124 n 111 GLU 124 A GLU 125 n 112 GLU 125 A LEU 126 n 113 LEU 126 A ILE 127 n 114 ILE 127 A ASP 128 n 115 ASP 128 A ILE 129 n 116 ILE 129 A ILE 130 n 117 ILE 130 A LEU 131 n 118 LEU 131 A LEU 132 n 119 LEU 132 A ILE 133 n 120 ILE 133 A LEU 134 n 121 LEU 134 A GLU 135 n 122 GLU 135 A ARG 136 n 123 ARG 136 A ASN 137 n 124 ASN 137 A PRO 138 n 125 PRO 138 A GLN 139 n 126 GLN 139 A LEU 140 n 127 LEU 140 A HIS 141 n 128 HIS 141 A TYR 142 n 129 TYR 142 A TYR 143 n 130 TYR 143 A GLN 144 n 131 GLN 144 A GLY 145 n 132 GLY 145 A TYR 146 n 133 TYR 146 A HIS 147 n 134 HIS 147 A ASP 148 n 135 ASP 148 A ILE 149 n 136 ILE 149 A VAL 150 n 137 VAL 150 A VAL 151 n 138 VAL 151 A THR 152 n 139 THR 152 A PHE 153 n 140 PHE 153 A LEU 154 n 141 LEU 154 A LEU 155 n 142 LEU 155 A VAL 156 n 143 VAL 156 A VAL 157 n 144 VAL 157 A GLY 158 n 145 GLY 158 A GLU 159 n 146 GLU 159 A ARG 160 n 147 ARG 160 A LEU 161 n 148 LEU 161 A ALA 162 n 149 ALA 162 A THR 163 n 150 THR 163 A SER 164 n 151 SER 164 A LEU 165 n 152 LEU 165 A VAL 166 n 153 VAL 166 A GLU 167 n 154 GLU 167 A LYS 168 n 155 LYS 168 A LEU 169 n 156 LEU 169 A SER 170 n 157 SER 170 A THR 171 n 158 THR 171 A HIS 172 n 159 HIS 172 A HIS 173 n 160 HIS 173 A LEU 174 n 161 LEU 174 A ARG 175 n 162 ARG 175 A ASP 176 n 163 ASP 176 A PHE 177 n 164 PHE 177 A MET 178 n 165 MET 178 A ASP 179 n 166 ASP 179 A PRO 180 n 167 PRO 180 A THR 181 n 168 THR 181 A MET 182 n 169 MET 182 A ASP 183 n 170 ASP 183 A ASN 184 n 171 ASN 184 A THR 185 n 172 THR 185 A LYS 186 n 173 LYS 186 A HIS 187 n 174 HIS 187 A ILE 188 n 175 ILE 188 A LEU 189 n 176 LEU 189 A ASN 190 n 177 ASN 190 A TYR 191 n 178 TYR 191 A LEU 192 n 179 LEU 192 A MET 193 n 180 MET 193 A PRO 194 n 181 PRO 194 A ILE 195 n 182 ILE 195 A ILE 196 n 183 ILE 196 A ASP 197 n 184 ASP 197 A GLN 198 n 185 GLN 198 A VAL 199 n 186 VAL 199 A ASN 200 n 187 ASN 200 A PRO 201 n 188 PRO 201 A GLU 202 n 189 GLU 202 A LEU 203 n 190 LEU 203 A HIS 204 n 191 HIS 204 A ASP 205 n 192 ASP 205 A PHE 206 n 193 PHE 206 A MET 207 n 194 MET 207 A GLN 208 n 195 GLN 208 A SER 209 n 196 SER 209 A ALA 210 n 197 ALA 210 A GLU 211 n 198 GLU 211 A VAL 212 n 199 VAL 212 A GLY 213 n 200 GLY 213 A THR 214 n 201 THR 214 A ILE 215 n 202 ILE 215 A PHE 216 n 203 PHE 216 A ALA 217 n 204 ALA 217 A LEU 218 n 205 LEU 218 A SER 219 n 206 SER 219 A TRP 220 n 207 TRP 220 A LEU 221 n 208 LEU 221 A ILE 222 n 209 ILE 222 A THR 223 n 210 THR 223 A TRP 224 n 211 TRP 224 A PHE 225 n 212 PHE 225 A GLY 226 n 213 GLY 226 A HIS 227 n 214 HIS 227 A VAL 228 n 215 VAL 228 A LEU 229 n 216 LEU 229 A SER 230 n 217 SER 230 A ASP 231 n 218 ASP 231 A PHE 232 n 219 PHE 232 A ARG 233 n 220 ARG 233 A HIS 234 n 221 HIS 234 A VAL 235 n 222 VAL 235 A VAL 236 n 223 VAL 236 A ARG 237 n 224 ARG 237 A LEU 238 n 225 LEU 238 A TYR 239 n 226 TYR 239 A ASP 240 n 227 ASP 240 A PHE 241 n 228 PHE 241 A PHE 242 n 229 PHE 242 A LEU 243 n 230 LEU 243 A ALA 244 n 231 ALA 244 A CYS 245 n 232 CYS 245 A HIS 246 n 233 HIS 246 A PRO 247 n 234 PRO 247 A LEU 248 n 235 LEU 248 A MET 249 n 236 MET 249 A PRO 250 n 237 PRO 250 A ILE 251 n 238 ILE 251 A TYR 252 n 239 TYR 252 A PHE 253 n 240 PHE 253 A ALA 254 n 241 ALA 254 A ALA 255 n 242 ALA 255 A VAL 256 n 243 VAL 256 A ILE 257 n 244 ILE 257 A VAL 258 n 245 VAL 258 A LEU 259 n 246 LEU 259 A TYR 260 n 247 TYR 260 A ARG 261 n 248 ARG 261 A GLU 262 n 249 GLU 262 A GLN 263 n 250 GLN 263 A GLU 264 n 251 GLU 264 A VAL 265 n 252 VAL 265 A LEU 266 n 253 LEU 266 A ASP 267 n 254 ASP 267 A CYS 268 n 255 CYS 268 A ASP 269 n 256 ASP 269 A CYS 270 n 257 CYS 270 A ASP 271 n 258 ASP 271 A MET 272 n 259 MET 272 A ALA 273 n 260 ALA 273 A SER 274 n 261 SER 274 A VAL 275 n 262 VAL 275 A HIS 276 n 263 HIS 276 A HIS 277 n 264 HIS 277 A LEU 278 n 265 LEU 278 A LEU 279 n 266 LEU 279 A SER 280 n 267 SER 280 A GLN 281 n 268 GLN 281 A ILE 282 n 269 ILE 282 A PRO 283 n 270 PRO 283 A GLN 284 n 271 GLN 284 A ASP 285 n 272 ASP 285 A LEU 286 n 273 LEU 286 A PRO 287 n 274 PRO 287 A TYR 288 n 275 TYR 288 A GLU 289 n 276 GLU 289 A THR 290 n 277 THR 290 A LEU 291 n 278 LEU 291 A ILE 292 n 279 ILE 292 A SER 293 n 280 SER 293 A ARG 294 n 281 ARG 294 A ALA 295 n 282 ALA 295 A GLY 296 n 283 GLY 296 A ASP 297 n 284 ASP 297 A LEU 298 n 285 LEU 298 A PHE 299 n 286 PHE 299 A VAL 300 n 287 VAL 300 A GLN 301 n 288 GLN 301 A PHE 302 n 289 PHE 302 A PRO 303 n 290 PRO 303 A PRO 304 n 291 PRO 304 A n 292 305 A 0.7603 0.0964 -0.1423 2.3950 -0.5405 3.6174 0.0750 0.1339 0.0046 -0.3063 -0.1935 -0.1852 -0.0007 0.3398 0.1185 0.1237 0.1277 0.0218 0.1859 0.0260 0.1920 refined -30.3498 1.5934 17.7047 X-RAY DIFFRACTION A 25 A 304 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG ASN 26 A CG ASN 13 1 Y 1 A OD1 ASN 26 A OD1 ASN 13 1 Y 1 A ND2 ASN 26 A ND2 ASN 13 1 Y 1 A CG LYS 28 A CG LYS 15 1 Y 1 A CD LYS 28 A CD LYS 15 1 Y 1 A CE LYS 28 A CE LYS 15 1 Y 1 A NZ LYS 28 A NZ LYS 15 1 Y 1 A CG LYS 30 A CG LYS 17 1 Y 1 A CD LYS 30 A CD LYS 17 1 Y 1 A CE LYS 30 A CE LYS 17 1 Y 1 A NZ LYS 30 A NZ LYS 17 1 Y 1 A CG ASP 80 A CG ASP 67 1 Y 1 A OD1 ASP 80 A OD1 ASP 67 1 Y 1 A OD2 ASP 80 A OD2 ASP 67 1 Y 1 A CG1 ILE 84 A CG1 ILE 71 1 Y 1 A CG2 ILE 84 A CG2 ILE 71 1 Y 1 A CD1 ILE 84 A CD1 ILE 71 1 Y 1 A OG SER 85 A OG SER 72 1 Y 1 A CG MET 92 A CG MET 79 1 Y 1 A SD MET 92 A SD MET 79 1 Y 1 A CE MET 92 A CE MET 79 1 Y 1 A CG ARG 104 A CG ARG 91 1 Y 1 A CD ARG 104 A CD ARG 91 1 Y 1 A NE ARG 104 A NE ARG 91 1 Y 1 A CZ ARG 104 A CZ ARG 91 1 Y 1 A NH1 ARG 104 A NH1 ARG 91 1 Y 1 A NH2 ARG 104 A NH2 ARG 91 1 Y 1 A OG SER 106 A OG SER 93 1 Y 1 A CG ARG 108 A CG ARG 95 1 Y 1 A CD ARG 108 A CD ARG 95 1 Y 1 A NE ARG 108 A NE ARG 95 1 Y 1 A CZ ARG 108 A CZ ARG 95 1 Y 1 A NH1 ARG 108 A NH1 ARG 95 1 Y 1 A NH2 ARG 108 A NH2 ARG 95 1 Y 1 A CG ARG 160 A CG ARG 147 1 Y 1 A CD ARG 160 A CD ARG 147 1 Y 1 A NE ARG 160 A NE ARG 147 1 Y 1 A CZ ARG 160 A CZ ARG 147 1 Y 1 A NH1 ARG 160 A NH1 ARG 147 1 Y 1 A NH2 ARG 160 A NH2 ARG 147 1 Y 1 A CG ARG 175 A CG ARG 162 1 Y 1 A CD ARG 175 A CD ARG 162 1 Y 1 A NE ARG 175 A NE ARG 162 1 Y 1 A CZ ARG 175 A CZ ARG 162 1 Y 1 A NH1 ARG 175 A NH1 ARG 162 1 Y 1 A NH2 ARG 175 A NH2 ARG 162 1 Y 1 A CG1 ILE 188 A CG1 ILE 175 1 Y 1 A CG2 ILE 188 A CG2 ILE 175 1 Y 1 A CD1 ILE 188 A CD1 ILE 175 1 Y 1 A O SER 209 A O SER 196 1 Y 1 A CG GLU 211 A CG GLU 198 1 Y 1 A CD GLU 211 A CD GLU 198 1 Y 1 A OE1 GLU 211 A OE1 GLU 198 1 Y 1 A OE2 GLU 211 A OE2 GLU 198 1 Y 1 A CG1 VAL 265 A CG1 VAL 252 1 Y 1 A CG2 VAL 265 A CG2 VAL 252 1 Y 1 A CG1 VAL 275 A CG1 VAL 262 1 Y 1 A CG2 VAL 275 A CG2 VAL 262 1 Y 1 A CG GLN 284 A CG GLN 271 1 Y 1 A CD GLN 284 A CD GLN 271 1 Y 1 A OE1 GLN 284 A OE1 GLN 271 1 Y 1 A NE2 GLN 284 A NE2 GLN 271 1 Y 1 A CG ASP 285 A CG ASP 272 1 Y 1 A OD1 ASP 285 A OD1 ASP 272 1 Y 1 A OD2 ASP 285 A OD2 ASP 272 1 Y 1 A GLY 14 A GLY 1 1 Y 1 A HIS 15 A HIS 2 1 Y 1 A TRP 16 A TRP 3 1 Y 1 A ASP 17 A ASP 4 1 Y 1 A GLY 18 A GLY 5 1 Y 1 A GLY 19 A GLY 6 1 Y 1 A ALA 20 A ALA 7 1 Y 1 A GLU 21 A GLU 8 1 Y 1 A LYS 22 A LYS 9 1 Y 1 A ALA 23 A ALA 10 1 Y 1 A ASP 24 A ASP 11 1 Y 1 A SER 305 A SER 292 1 Y 1 A A NH2 BE ARG BEF 105 401 2.01 1 A A O O ASP HOH 179 506 2.08 1 -16.82 2.50 121.70 104.88 A A A C N CA LEU LEU LEU 60 61 61 Y 1 3.40 0.50 120.30 123.70 A A A NE CZ NH1 ARG ARG ARG 66 66 66 N 1 -3.87 0.50 120.30 116.43 A A A NE CZ NH1 ARG ARG ARG 237 237 237 N 1 17.87 2.30 115.30 133.17 A A A CA CB CG LEU LEU LEU 266 266 266 B B B N 1 A ALA 78 -43.72 106.25 1 A ASP 80 -52.20 106.31 1 A PRO 82 -38.28 117.58 1 A PRO 83 -26.29 107.66 1 A ILE 84 -26.44 150.80 1 A ARG 105 -77.34 27.33 1 A HIS 172 -124.25 -89.40 1 A LYS 186 -61.50 -161.51 1 A HIS 187 46.51 -135.03 1 A CYS 270 38.08 56.13 1 A MET 272 -38.07 -33.00 64.211 3.34 1.67 0.00 3.34 0.00 -5.00 0.958 0.949 0.23489 0.20259 0.20425 2.20 42.27 926 18508 17582 5.0 100.00 12.531 0.144 RANDOM 1,2 THROUGHOUT 0 -3.0 SAD 0.237 0.190 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.20 42.27 45 2277 12 0 2220 0.022 0.022 2301 1.867 1.971 3138 6.542 5.000 285 36.732 23.868 106 17.948 15.000 375 26.610 15.000 14 0.123 0.200 358 0.010 0.021 1759 1.142 1.500 1421 2.032 2.000 2294 3.144 3.000 880 4.883 4.500 841 0.265 0.215 2.257 66 1255 20 100.00 2.2 50 4HL4 18695 18508 0 -3 1,2 99.9 2.2 2.3 1,2 99.9 data scaling XDS phasing SOLVE refinement REFMAC 5.5.0102 data reduction XDS Crystal structure of the human TBC1D20 RabGAP domain 1 N N 2 N N 3 N N 3 N N 4 N N A PHE 25 A PHE 12 HELX_P A ASN 41 A ASN 28 1 1 17 A ASP 46 A ASP 33 HELX_P A SER 56 A SER 43 1 2 11 A THR 62 A THR 49 HELX_P A LEU 74 A LEU 61 1 3 13 A ASN 88 A ASN 75 HELX_P A SER 93 A SER 80 1 4 6 A ASP 95 A ASP 82 HELX_P A ARG 105 A ARG 92 1 5 11 A SER 106 A SER 93 HELX_P A PHE 110 A PHE 97 5 6 5 A PRO 115 A PRO 102 HELX_P A ASN 137 A ASN 124 1 7 23 A GLY 145 A GLY 132 HELX_P A GLY 158 A GLY 145 1 8 14 A GLY 158 A GLY 145 HELX_P A HIS 172 A HIS 159 1 9 15 A ARG 175 A ARG 162 HELX_P A ASP 179 A ASP 166 5 10 5 A LYS 186 A LYS 173 HELX_P A ASN 190 A ASN 177 5 11 5 A TYR 191 A TYR 178 HELX_P A ASN 200 A ASN 187 1 12 10 A ASN 200 A ASN 187 HELX_P A SER 209 A SER 196 1 13 10 A THR 214 A THR 201 HELX_P A PHE 216 A PHE 203 5 14 3 A ALA 217 A ALA 204 HELX_P A THR 223 A THR 210 1 15 7 A ASP 231 A ASP 218 HELX_P A CYS 245 A CYS 232 1 16 15 A LEU 248 A LEU 235 HELX_P A ARG 261 A ARG 248 1 17 14 A ARG 261 A ARG 248 HELX_P A ASP 267 A ASP 254 1 18 7 A ALA 273 A ALA 260 HELX_P A GLN 281 A GLN 268 1 19 9 A PRO 287 A PRO 274 HELX_P A PHE 302 A PHE 289 1 20 16 HYDROLASE ACTIVATOR Tbc, RabGAP, Rab1b, Hydrolase activator, Catalytic Domain, Fluorides, GTPase-Activating Proteins, Rab GTP-Binding Protein, GTP Hydrolase A ASP 43 A ASP 30 1 A PRO 44 A PRO 31 -0.09 TBC20_HUMAN UNP 1 14 Q96BZ9 GHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPISGKNLRQMS KDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH LRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYF AAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPS 14 305 4HL4 14 305 Q96BZ9 A 1 1 292 BINDING SITE FOR RESIDUE BEF A 401 A BEF 401 Software 5 BINDING SITE FOR RESIDUE ACT A 402 A ACT 402 Software 2 BINDING SITE FOR RESIDUE ACT A 403 A ACT 403 Software 3 A ASN 75 A ASN 62 5 6_445 A ARG 105 A ARG 92 5 1_555 A LYS 168 A LYS 155 5 6_445 A HIS 172 A HIS 159 5 6_445 A HOH 520 E HOH 5 1_555 A HIS 276 A HIS 263 2 1_555 A HIS 277 A HIS 264 2 1_555 A PHE 216 A PHE 203 3 1_555 A SER 219 A SER 206 3 1_555 A SER 280 A SER 267 3 1_555 152 P 31 2 1