0.039722 0.000000 0.000000 0.000000 0.024637 0.000000 0.000000 0.000000 0.015291 0.00000 0.00000 0.00000 Spingler, B. Renciuk, D. Vorlickova, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.175 40.590 65.399 C10 H16 N3 O8 P 337.223 n 2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N P N 2 N O N 3 N O N 4 N O N 5 N C N 6 R C N 7 N O N 8 S C N 9 N O N 10 N C N 11 R C N 12 N N N 13 N C N 14 N O N 15 N N N 16 N C N 17 N N N 18 N C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N O N 40 N P N 41 N O N 42 N O N 43 N O N 44 N C N 45 R C N 46 N O N 47 S C N 48 N O N 49 N C N 50 R C Y 51 N N Y 52 N C Y 53 N N Y 54 N C Y 55 N C N 56 N N Y 57 N N Y 58 N C Y 59 N N Y 60 N C N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N C N 81 R C N 82 N O N 83 S C N 84 N O N 85 N C N 86 R C N 87 N N N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C Y 121 N N Y 122 N C Y 123 N N Y 124 N C N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N N Y 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 N C N 157 R C N 158 N N N 159 N C N 160 N O N 161 N N N 162 N C N 163 N O N 164 N C N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N K N 186 N MG N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N sing Y 68 N sing Y 69 N doub N 70 N sing Y 71 N doub N 72 N sing N 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N doub N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 9891 9900 10.1093/nar/gkt738 23963698 Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. 2013 10.2210/pdb4hli/pdb pdb_00004hli 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 PIXEL 2012-06-09 DECTRIS PILATUS 2M-F BARTELS MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 1.00067 1.0 1.000670 1.0 X06DA SLS 1.00067 1.000670 SYNCHROTRON SLS BEAMLINE X06DA 3693.418 DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 39.098 POTASSIUM ION 1 syn non-polymer 18.015 water 29 nat water no yes (DC)(DG)(5HC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGXGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 1 2.27 45.73 VAPOR DIFFUSION, SITTING DROP 7.0 0.04m sodium cacodylate buffer, 0.08M NaCCl, 0.12m KCl, 0.02m MgCl2, 0.012m spermine tetra hydrochloride, 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 -5.343 1 19 A 1 B 12 -2.534 A_DC1:DG12_B 1 -4.489 0.076 0.576 -0.178 -0.280 1 19 A 2 B 11 0.027 A_DG2:DC11_B 2 -16.029 -0.396 0.302 -0.042 15.427 1 19 A 4 B 9 -3.836 A_DG4:DC9_B 3 -4.481 -0.710 -0.046 -0.108 4.870 1 20 A 5 B 8 2.021 A_DA5:DT8_B 4 -16.988 0.116 0.075 -0.256 6.074 1 20 A 6 B 7 0.749 A_DA6:DT7_B 5 -17.504 0.050 0.439 -0.265 -1.675 1 20 A 7 B 6 4.983 A_DT7:DA6_B 6 -22.231 0.115 0.224 -0.188 -5.236 1 20 A 8 B 5 4.739 A_DT8:DA5_B 7 -15.646 0.045 0.192 -0.080 -16.184 1 19 A 9 B 4 -2.285 A_DC9:DG4_B 8 -10.535 0.408 0.070 -0.134 9.181 1 19 A 11 B 2 -2.838 A_DC11:DG2_B 9 -21.989 0.325 -0.169 -0.169 10.500 1 19 A 12 B 1 2.410 A_DG12:DC1_B 10 -6.420 -0.154 0.248 0.038 3.277 35.219 A A 1 2 -0.625 B B 12 11 3.267 -0.378 -0.587 -0.141 AA_DC1DG2:DC11DG12_BB 1 -0.556 0.920 35.213 -0.177 0.887 6.454 66.039 A A 2 4 -0.369 B B 11 9 6.456 -0.402 -0.358 0.416 AA_DG2DG4:DC9DC11_BB 2 -0.012 0.011 66.038 0.414 0.327 3.451 39.117 A A 4 5 4.133 B B 9 8 3.491 2.764 0.095 -0.403 AA_DG4DA5:DT8DC9_BB 3 -1.274 1.905 39.003 -0.954 -0.304 3.034 37.381 A A 5 6 -1.809 B B 8 7 3.020 -1.158 -0.120 -0.514 AA_DA5DA6:DT7DT8_BB 4 -3.175 4.961 37.233 -0.660 -0.201 3.387 32.984 A A 6 7 -1.174 B B 7 6 3.370 -0.666 0.203 -0.713 AA_DA6DT7:DA6DT7_BB 5 3.275 -5.778 32.818 -1.138 0.219 3.239 34.277 A A 7 8 -3.992 B B 6 5 3.213 -2.350 -0.217 -0.403 AA_DT7DT8:DA5DA6_BB 6 -1.902 3.231 34.147 -0.319 0.072 3.503 42.469 A A 8 9 -7.224 B B 5 4 3.509 -5.219 -0.337 -0.306 AA_DT8DC9:DG4DA5_BB 7 1.879 -2.601 42.122 0.148 0.671 5.968 70.388 A A 9 11 -4.708 B B 4 2 6.031 -5.422 -0.077 0.683 AA_DC9DC11:DG2DG4_BB 8 1.928 -1.674 70.183 0.943 0.191 3.240 35.276 A A 11 12 15.630 B B 2 1 3.254 9.356 0.501 0.560 AA_DC11DG12:DC1DG2_BB 9 -2.799 4.675 33.939 -0.482 -1.247 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-09-04 1 1 2013-12-04 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-10-17 REL REL MG MAGNESIUM ION K POTASSIUM ION HOH water 9606 Homo sapiens sample 1DPN PDB ENTRY 1DPN PDB experimental model MO6 51 2 MG MG 101 A K 52 3 K K 102 A MO6 51 4 HOH HOH 201 A MO6 51 4 HOH HOH 202 A MO6 51 4 HOH HOH 203 A MO6 51 4 HOH HOH 204 A MO6 51 4 HOH HOH 205 A MO6 51 4 HOH HOH 206 A HOH 102 4 HOH HOH 207 A HOH 103 4 HOH HOH 208 A HOH 104 4 HOH HOH 209 A HOH 110 4 HOH HOH 210 A HOH 111 4 HOH HOH 211 A HOH 112 4 HOH HOH 212 A HOH 113 4 HOH HOH 213 A HOH 114 4 HOH HOH 214 A HOH 116 4 HOH HOH 215 A HOH 117 4 HOH HOH 216 A HOH 119 4 HOH HOH 217 A HOH 121 4 HOH HOH 218 A HOH 122 4 HOH HOH 219 A HOH 101 4 HOH HOH 101 B HOH 105 4 HOH HOH 102 B HOH 106 4 HOH HOH 103 B HOH 107 4 HOH HOH 104 B HOH 108 4 HOH HOH 105 B HOH 109 4 HOH HOH 106 B HOH 115 4 HOH HOH 107 B HOH 118 4 HOH HOH 108 B HOH 120 4 HOH HOH 109 B HOH 123 4 HOH HOH 110 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A 5HC 3 n 3 5HC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 1 n 1 DC 1 B G 2 n 2 DG 2 B 5HC 3 n 3 5HC 3 B G 4 n 4 DG 4 B A 5 n 5 DA 5 B A 6 n 6 DA 6 B T 7 n 7 DT 7 B T 8 n 8 DT 8 B C 9 n 9 DC 9 B G 10 n 10 DG 10 B C 11 n 11 DC 11 B G 12 n 12 DG 12 B 0.2461 0.2548 0.2429 0.2518 0.3180 0.3281 308 334 7.14 6.99 4315 author_and_software_defined_assembly PISA 2 dimeric 1540 -7 4470 A DT 8 A O2 DT 8 1_555 A K 102 D K K 1_555 A DC 9 A O4' DC 9 1_555 65.0 A DT 8 A O2 DT 8 1_555 A K 102 D K K 1_555 B DT 7 B O4' DT 7 1_555 139.8 A DC 9 A O4' DC 9 1_555 A K 102 D K K 1_555 B DT 7 B O4' DT 7 1_555 155.2 A DT 8 A O2 DT 8 1_555 A K 102 D K K 1_555 B HOH 102 F O HOH 1_555 97.0 A DC 9 A O4' DC 9 1_555 A K 102 D K K 1_555 B HOH 102 F O HOH 1_555 102.9 B DT 7 B O4' DT 7 1_555 A K 102 D K K 1_555 B HOH 102 F O HOH 1_555 76.4 A DT 8 A O2 DT 8 1_555 A K 102 D K K 1_555 B HOH 104 F O HOH 1_555 119.5 A DC 9 A O4' DC 9 1_555 A K 102 D K K 1_555 B HOH 104 F O HOH 1_555 78.6 B DT 7 B O4' DT 7 1_555 A K 102 D K K 1_555 B HOH 104 F O HOH 1_555 85.9 B HOH 102 F O HOH 1_555 A K 102 D K K 1_555 B HOH 104 F O HOH 1_555 138.7 A HOH 201 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 202 E O HOH 1_555 72.5 A HOH 201 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 203 E O HOH 1_555 109.8 A HOH 202 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 203 E O HOH 1_555 173.1 A HOH 201 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 204 E O HOH 1_555 173.2 A HOH 202 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 204 E O HOH 1_555 108.1 A HOH 203 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 204 E O HOH 1_555 70.5 A HOH 201 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 205 E O HOH 1_555 86.6 A HOH 202 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 205 E O HOH 1_555 93.2 A HOH 203 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 205 E O HOH 1_555 93.4 A HOH 204 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 205 E O HOH 1_555 86.7 A HOH 201 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 93.0 A HOH 202 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 86.6 A HOH 203 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 86.8 A HOH 204 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 93.8 A HOH 205 E O HOH 1_555 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 179.5 A 5HC 3 A 5HC 3 DC B 5HC 3 B 5HC 3 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -4.40 0.70 108.00 103.60 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 -5.70 0.70 108.00 102.30 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 -6.75 0.80 102.40 95.65 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 8.46 1.20 119.70 128.16 B B B C3' O3' P DT DT DC 8 8 9 Y 1 -5.52 0.80 102.40 96.88 B B B C3' C2' C1' DG DG DG 10 10 10 N 0.3281 0.2518 0.2548 0.2518 1.99 50.00 2099 334 4775 4315 2456 6.99 96.5 RANDOM 1 FREE R 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1DPN ENGH AND HUBER 1 0.00 515.50 1.99 50.00 29 521 2 490 0 0.007 0.073 0.000 0.0005 0.000 0.006 0.005 0.000 0.075 0.000 1.99 50.0 4HLI 4775 4315 2 4 0.038 0.022 1 21.23 3.55 96.5 0.217 1.99 2.11 5.81 1 3.27 94.6 data collection RemDAq phasing PHASER refinement SHELXL-97 data reduction XDS data scaling XDS DNA dodecamer containing 5-hydroxymethyl-cytosine 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N covale 1.617 both A DG 2 A O3' DG 2 1_555 A 5HC 3 A P 5HC 3 1_555 covale 1.606 both A 5HC 3 A O3' 5HC 3 1_555 A DG 4 A P DG 4 1_555 covale 1.606 both B DG 2 B O3' DG 2 1_555 B 5HC 3 B P 5HC 3 1_555 covale 1.605 both B 5HC 3 B O3' 5HC 3 1_555 B DG 4 B P DG 4 1_555 metalc 2.847 A DT 8 A O2 DT 8 1_555 A K 102 D K K 1_555 metalc 2.987 A DC 9 A O4' DC 9 1_555 A K 102 D K K 1_555 metalc 2.091 A MG 101 C MG MG 1_555 A HOH 201 E O HOH 1_555 metalc 2.093 A MG 101 C MG MG 1_555 A HOH 202 E O HOH 1_555 metalc 2.088 A MG 101 C MG MG 1_555 A HOH 203 E O HOH 1_555 metalc 2.094 A MG 101 C MG MG 1_555 A HOH 204 E O HOH 1_555 metalc 2.130 A MG 101 C MG MG 1_555 A HOH 205 E O HOH 1_555 metalc 2.135 A MG 101 C MG MG 1_555 A HOH 206 E O HOH 1_555 metalc 3.158 A K 102 D K K 1_555 B DT 7 B O4' DT 7 1_555 metalc 2.641 A K 102 D K K 1_555 B HOH 102 F O HOH 1_555 metalc 2.711 A K 102 D K K 1_555 B HOH 104 F O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 11 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 9 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 9 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 9 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 8 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 8 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 6 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 6 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 5 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 5 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 4 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 4 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 2 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 1 B N4 DC 1 1_555 DNA B-DNA dodecamer, epigenetics, 5-hydroxymethyl cytosine, DNA 4HLI PDB 1 4HLI 1 12 4HLI 1 12 4HLI A 1 1 12 1 12 4HLI 1 12 4HLI B 1 1 12 BINDING SITE FOR RESIDUE MG A 101 A MG 101 Software 6 BINDING SITE FOR RESIDUE K A 102 A K 102 Software 6 A HOH 201 E HOH 6 1_555 A HOH 202 E HOH 6 1_555 A HOH 203 E HOH 6 1_555 A HOH 204 E HOH 6 1_555 A HOH 205 E HOH 6 1_555 A HOH 206 E HOH 6 1_555 A DT 8 A DT 8 6 1_555 A DC 9 A DC 9 6 1_555 B DA 6 B DA 6 6 1_555 B DT 7 B DT 7 6 1_555 B HOH 102 F HOH 6 1_555 B HOH 104 F HOH 6 1_555 19 P 21 21 21