52.75
7.460
14.615
22.228
A
O5'
DC
1
ATOM
A
O5'
DC
1
1
0.50
1
O
43.93
7.091
13.887
23.406
A
C5'
DC
1
ATOM
A
C5'
DC
1
1
1.00
1
C
45.83
7.779
12.542
23.421
A
C4'
DC
1
ATOM
A
C4'
DC
1
1
1.00
1
C
40.61
7.001
11.616
24.222
A
O4'
DC
1
ATOM
A
O4'
DC
1
1
1.00
1
O
48.16
7.940
11.890
22.058
A
C3'
DC
1
ATOM
A
C3'
DC
1
1
1.00
1
C
57.95
9.286
11.456
21.861
A
O3'
DC
1
ATOM
A
O3'
DC
1
1
1.00
1
O
38.35
6.992
10.725
22.066
A
C2'
DC
1
ATOM
A
C2'
DC
1
1
1.00
1
C
38.33
6.915
10.373
23.551
A
C1'
DC
1
ATOM
A
C1'
DC
1
1
1.00
1
C
37.19
5.673
9.699
23.934
A
N1
DC
1
ATOM
A
N1
DC
1
1
1.00
1
N
28.04
5.731
8.360
24.328
A
C2
DC
1
ATOM
A
C2
DC
1
1
1.00
1
C
30.57
6.823
7.774
24.347
A
O2
DC
1
ATOM
A
O2
DC
1
1
1.00
1
O
26.43
4.592
7.736
24.682
A
N3
DC
1
ATOM
A
N3
DC
1
1
1.00
1
N
36.71
3.420
8.369
24.660
A
C4
DC
1
ATOM
A
C4
DC
1
1
1.00
1
C
29.96
2.327
7.683
25.025
A
N4
DC
1
ATOM
A
N4
DC
1
1
1.00
1
N
43.00
3.334
9.737
24.261
A
C5
DC
1
ATOM
A
C5
DC
1
1
1.00
1
C
40.54
4.470
10.354
23.911
A
C6
DC
1
ATOM
A
C6
DC
1
1
1.00
1
C
51.89
9.807
11.055
20.395
A
P
DG
2
ATOM
A
P
DG
1
2
1.00
1
P
54.90
10.734
12.115
19.936
A
OP1
DG
2
ATOM
A
OP1
DG
1
2
1.00
1
O
39.26
8.628
10.701
19.567
A
OP2
DG
2
ATOM
A
OP2
DG
1
2
1.00
1
O
53.47
10.641
9.720
20.643
A
O5'
DG
2
ATOM
A
O5'
DG
1
2
1.00
1
O
45.00
10.832
9.164
21.946
A
C5'
DG
2
ATOM
A
C5'
DG
1
2
1.00
1
C
36.46
11.193
7.702
21.852
A
C4'
DG
2
ATOM
A
C4'
DG
1
2
1.00
1
C
40.03
10.044
6.942
22.307
A
O4'
DG
2
ATOM
A
O4'
DG
1
2
1.00
1
O
22.14
11.506
7.175
20.473
A
C3'
DG
2
ATOM
A
C3'
DG
1
2
1.00
1
C
39.98
12.373
6.046
20.476
A
O3'
DG
2
ATOM
A
O3'
DG
1
2
1.00
1
O
25.21
10.144
6.773
19.956
A
C2'
DG
2
ATOM
A
C2'
DG
1
2
1.00
1
C
32.25
9.494
6.216
21.217
A
C1'
DG
2
ATOM
A
C1'
DG
1
2
1.00
1
C
26.97
8.039
6.381
21.247
A
N9
DG
2
ATOM
A
N9
DG
1
2
1.00
1
N
22.62
7.316
7.468
20.814
A
C8
DG
2
ATOM
A
C8
DG
1
2
1.00
1
C
35.36
6.027
7.311
20.975
A
N7
DG
2
ATOM
A
N7
DG
1
2
1.00
1
N
30.68
5.892
6.054
21.545
A
C5
DG
2
ATOM
A
C5
DG
1
2
1.00
1
C
34.45
4.729
5.347
21.942
A
C6
DG
2
ATOM
A
C6
DG
1
2
1.00
1
C
32.01
3.548
5.710
21.864
A
O6
DG
2
ATOM
A
O6
DG
1
2
1.00
1
O
40.09
5.049
4.107
22.472
A
N1
DG
2
ATOM
A
N1
DG
1
2
1.00
1
N
45.68
6.324
3.609
22.603
A
C2
DG
2
ATOM
A
C2
DG
1
2
1.00
1
C
29.99
6.445
2.380
23.142
A
N2
DG
2
ATOM
A
N2
DG
1
2
1.00
1
N
32.67
7.413
4.263
22.235
A
N3
DG
2
ATOM
A
N3
DG
1
2
1.00
1
N
28.64
7.125
5.468
21.718
A
C4
DG
2
ATOM
A
C4
DG
1
2
1.00
1
C
40.87
12.820
5.420
19.054
A
P
5HC
3
HETATM
A
P
5HC
1
3
1.00
1
P
35.28
14.307
5.314
19.079
A
OP1
5HC
3
HETATM
A
OP1
5HC
1
3
1.00
1
O
41.43
12.153
6.213
17.987
A
OP2
5HC
3
HETATM
A
OP2
5HC
1
3
1.00
1
O
34.47
12.215
3.959
19.029
A
O5'
5HC
3
HETATM
A
O5'
5HC
1
3
1.00
1
O
37.19
12.185
3.094
20.167
A
C5'
5HC
3
HETATM
A
C5'
5HC
1
3
1.00
1
C
31.68
11.138
2.026
19.947
A
C4'
5HC
3
HETATM
A
C4'
5HC
1
3
1.00
1
C
27.21
9.825
2.571
20.212
A
O4'
5HC
3
HETATM
A
O4'
5HC
1
3
1.00
1
O
29.23
11.088
1.478
18.532
A
C3'
5HC
3
HETATM
A
C3'
5HC
1
3
1.00
1
C
42.38
11.744
0.210
18.460
A
O3'
5HC
3
HETATM
A
O3'
5HC
1
3
1.00
1
O
32.65
9.632
1.343
18.207
A
C2'
5HC
3
HETATM
A
C2'
5HC
1
3
1.00
1
C
34.04
8.872
1.948
19.369
A
C1'
5HC
3
HETATM
A
C1'
5HC
1
3
1.00
1
C
26.22
7.901
2.972
18.948
A
N1
5HC
3
HETATM
A
N1
5HC
1
3
1.00
1
N
25.70
6.555
2.764
19.227
A
C2
5HC
3
HETATM
A
C2
5HC
1
3
1.00
1
C
49.87
6.221
1.726
19.818
A
O2
5HC
3
HETATM
A
O2
5HC
1
3
1.00
1
O
23.96
5.653
3.696
18.846
A
N3
5HC
3
HETATM
A
N3
5HC
1
3
1.00
1
N
29.79
6.052
4.797
18.214
A
C4
5HC
3
HETATM
A
C4
5HC
1
3
1.00
1
C
31.99
5.115
5.682
17.863
A
N4
5HC
3
HETATM
A
N4
5HC
1
3
1.00
1
N
36.56
7.425
5.036
17.916
A
C5
5HC
3
HETATM
A
C5
5HC
1
3
1.00
1
C
39.29
7.829
6.289
17.203
A
C5M
5HC
3
HETATM
A
C5M
5HC
1
3
1.00
1
C
63.09
8.206
6.002
15.857
A
O5
5HC
3
HETATM
A
O5
5HC
1
3
1.00
1
O
29.99
8.308
4.105
18.298
A
C6
5HC
3
HETATM
A
C6
5HC
1
3
1.00
1
C
37.89
11.928
-0.559
17.062
A
P
DG
4
ATOM
A
P
DG
1
4
1.00
1
P
40.49
13.288
-1.160
17.075
A
OP1
DG
4
ATOM
A
OP1
DG
1
4
1.00
1
O
29.59
11.512
0.351
15.965
A
OP2
DG
4
ATOM
A
OP2
DG
1
4
1.00
1
O
35.01
10.853
-1.716
17.119
A
O5'
DG
4
ATOM
A
O5'
DG
1
4
1.00
1
O
44.51
10.514
-2.369
18.350
A
C5'
DG
4
ATOM
A
C5'
DG
1
4
1.00
1
C
46.81
9.265
-3.175
18.075
A
C4'
DG
4
ATOM
A
C4'
DG
1
4
1.00
1
C
43.14
8.150
-2.266
18.020
A
O4'
DG
4
ATOM
A
O4'
DG
1
4
1.00
1
O
45.40
9.272
-3.932
16.759
A
C3'
DG
4
ATOM
A
C3'
DG
1
4
1.00
1
C
50.28
8.632
-5.194
16.908
A
O3'
DG
4
ATOM
A
O3'
DG
1
4
1.00
1
O
41.10
8.534
-3.009
15.817
A
C2'
DG
4
ATOM
A
C2'
DG
1
4
1.00
1
C
39.47
7.516
-2.386
16.749
A
C1'
DG
4
ATOM
A
C1'
DG
1
4
1.00
1
C
27.42
7.082
-1.024
16.425
A
N9
DG
4
ATOM
A
N9
DG
1
4
1.00
1
N
23.20
7.790
-0.012
15.836
A
C8
DG
4
ATOM
A
C8
DG
1
4
1.00
1
C
26.55
7.094
1.079
15.695
A
N7
DG
4
ATOM
A
N7
DG
1
4
1.00
1
N
23.10
5.859
0.764
16.222
A
C5
DG
4
ATOM
A
C5
DG
1
4
1.00
1
C
31.42
4.693
1.564
16.340
A
C6
DG
4
ATOM
A
C6
DG
1
4
1.00
1
C
38.20
4.549
2.738
15.983
A
O6
DG
4
ATOM
A
O6
DG
1
4
1.00
1
O
29.93
3.675
0.839
16.936
A
N1
DG
4
ATOM
A
N1
DG
1
4
1.00
1
N
32.91
3.739
-0.464
17.364
A
C2
DG
4
ATOM
A
C2
DG
1
4
1.00
1
C
37.34
2.621
-0.967
17.916
A
N2
DG
4
ATOM
A
N2
DG
1
4
1.00
1
N
30.86
4.818
-1.223
17.261
A
N3
DG
4
ATOM
A
N3
DG
1
4
1.00
1
N
30.84
5.823
-0.528
16.681
A
C4
DG
4
ATOM
A
C4
DG
1
4
1.00
1
C
50.68
8.092
-6.080
15.689
A
P
DA
5
ATOM
A
P
DA
1
5
1.00
1
P
46.73
8.282
-7.511
16.063
A
OP1
DA
5
ATOM
A
OP1
DA
1
5
1.00
1
O
48.41
8.664
-5.553
14.427
A
OP2
DA
5
ATOM
A
OP2
DA
1
5
1.00
1
O
44.38
6.526
-5.791
15.673
A
O5'
DA
5
ATOM
A
O5'
DA
1
5
1.00
1
O
36.77
5.664
-6.407
16.637
A
C5'
DA
5
ATOM
A
C5'
DA
1
5
1.00
1
C
38.24
4.257
-5.896
16.468
A
C4'
DA
5
ATOM
A
C4'
DA
1
5
1.00
1
C
41.03
4.268
-4.480
16.157
A
O4'
DA
5
ATOM
A
O4'
DA
1
5
1.00
1
O
43.32
3.482
-6.558
15.337
A
C3'
DA
5
ATOM
A
C3'
DA
1
5
1.00
1
C
45.10
2.209
-6.985
15.828
A
O3'
DA
5
ATOM
A
O3'
DA
1
5
1.00
1
O
45.42
3.378
-5.505
14.261
A
C2'
DA
5
ATOM
A
C2'
DA
1
5
1.00
1
C
35.24
3.376
-4.221
15.064
A
C1'
DA
5
ATOM
A
C1'
DA
1
5
1.00
1
C
34.28
3.909
-3.003
14.449
A
N9
DA
5
ATOM
A
N9
DA
1
5
1.00
1
N
33.93
5.179
-2.772
13.989
A
C8
DA
5
ATOM
A
C8
DA
1
5
1.00
1
C
37.75
5.352
-1.569
13.487
A
N7
DA
5
ATOM
A
N7
DA
1
5
1.00
1
N
35.84
4.108
-0.967
13.629
A
C5
DA
5
ATOM
A
C5
DA
1
5
1.00
1
C
36.35
3.627
0.311
13.293
A
C6
DA
5
ATOM
A
C6
DA
1
5
1.00
1
C
32.67
4.349
1.281
12.716
A
N6
DA
5
ATOM
A
N6
DA
1
5
1.00
1
N
38.13
2.334
0.570
13.578
A
N1
DA
5
ATOM
A
N1
DA
1
5
1.00
1
N
43.72
1.580
-0.372
14.153
A
C2
DA
5
ATOM
A
C2
DA
1
5
1.00
1
C
43.85
1.921
-1.608
14.515
A
N3
DA
5
ATOM
A
N3
DA
1
5
1.00
1
N
36.47
3.213
-1.839
14.220
A
C4
DA
5
ATOM
A
C4
DA
1
5
1.00
1
C
40.60
1.353
-8.047
14.984
A
P
DA
6
ATOM
A
P
DA
1
6
1.00
1
P
56.41
0.737
-8.996
15.943
A
OP1
DA
6
ATOM
A
OP1
DA
1
6
1.00
1
O
40.94
2.222
-8.533
13.880
A
OP2
DA
6
ATOM
A
OP2
DA
1
6
1.00
1
O
39.58
0.190
-7.156
14.354
A
O5'
DA
6
ATOM
A
O5'
DA
1
6
1.00
1
O
38.93
-0.424
-6.149
15.173
A
C5'
DA
6
ATOM
A
C5'
DA
1
6
1.00
1
C
35.67
-1.282
-5.256
14.309
A
C4'
DA
6
ATOM
A
C4'
DA
1
6
1.00
1
C
30.70
-0.512
-4.149
13.795
A
O4'
DA
6
ATOM
A
O4'
DA
1
6
1.00
1
O
36.84
-1.873
-5.993
13.105
A
C3'
DA
6
ATOM
A
C3'
DA
1
6
1.00
1
C
39.41
-3.292
-5.860
13.147
A
O3'
DA
6
ATOM
A
O3'
DA
1
6
1.00
1
O
34.90
-1.211
-5.349
11.914
A
C2'
DA
6
ATOM
A
C2'
DA
1
6
1.00
1
C
29.14
-0.799
-3.975
12.399
A
C1'
DA
6
ATOM
A
C1'
DA
1
6
1.00
1
C
32.97
0.421
-3.374
11.843
A
N9
DA
6
ATOM
A
N9
DA
1
6
1.00
1
N
29.79
1.652
-3.946
11.657
A
C8
DA
6
ATOM
A
C8
DA
1
6
1.00
1
C
32.80
2.546
-3.136
11.135
A
N7
DA
6
ATOM
A
N7
DA
1
6
1.00
1
N
33.31
1.863
-1.940
10.962
A
C5
DA
6
ATOM
A
C5
DA
1
6
1.00
1
C
31.50
2.247
-0.685
10.451
A
C6
DA
6
ATOM
A
C6
DA
1
6
1.00
1
C
24.83
3.460
-0.369
9.989
A
N6
DA
6
ATOM
A
N6
DA
1
6
1.00
1
N
29.49
1.314
0.288
10.423
A
N1
DA
6
ATOM
A
N1
DA
1
6
1.00
1
N
28.62
0.085
0.014
10.876
A
C2
DA
6
ATOM
A
C2
DA
1
6
1.00
1
C
33.47
-0.387
-1.120
11.374
A
N3
DA
6
ATOM
A
N3
DA
1
6
1.00
1
N
29.94
0.555
-2.075
11.395
A
C4
DA
6
ATOM
A
C4
DA
1
6
1.00
1
C
35.21
-4.265
-6.350
11.974
A
P
DT
7
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1
7
1.00
1
P
37.83
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12.534
A
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7
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A
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DT
1
7
1.00
1
O
29.46
-3.615
-7.488
11.285
A
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7
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A
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DT
1
7
1.00
1
O
36.18
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A
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7
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A
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DT
1
7
1.00
1
O
31.79
-4.703
-3.827
11.477
A
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7
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A
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DT
1
7
1.00
1
C
32.59
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-2.759
10.435
A
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7
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A
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DT
1
7
1.00
1
C
30.05
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-2.615
10.122
A
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7
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DT
1
7
1.00
1
O
28.27
-5.179
-3.033
9.090
A
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7
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DT
1
7
1.00
1
C
32.00
-6.285
-2.143
8.981
A
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7
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A
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DT
1
7
1.00
1
O
33.89
-4.119
-2.824
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A
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7
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A
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DT
1
7
1.00
1
C
32.91
-3.033
-2.075
8.787
A
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7
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A
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DT
1
7
1.00
1
C
28.44
-1.632
-2.256
8.402
A
N1
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7
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A
N1
DT
1
7
1.00
1
N
27.84
-0.922
-1.163
7.967
A
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7
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A
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DT
1
7
1.00
1
C
39.61
-1.397
-0.040
7.878
A
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7
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A
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1
7
1.00
1
O
22.86
0.382
-1.431
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A
N3
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7
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A
N3
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1
7
1.00
1
N
25.64
1.015
-2.653
7.698
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7
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A
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1
7
1.00
1
C
45.45
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7
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A
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1
7
1.00
1
O
24.43
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8.166
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7
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A
C5
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1
7
1.00
1
C
18.46
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7
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A
C7
DT
1
7
1.00
1
C
23.18
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7
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A
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1
7
1.00
1
C
36.59
-7.330
-2.094
7.778
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P
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8
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A
P
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1
8
1.00
1
P
33.30
-8.611
-1.555
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8
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A
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DT
1
8
1.00
1
O
43.09
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7.055
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8
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1
8
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1
O
38.56
-6.698
-0.979
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8
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1
8
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O
34.80
-6.536
0.365
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8
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1
8
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1
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33.99
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6.309
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8
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A
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DT
1
8
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1
C
28.80
-4.364
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6.274
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8
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1
8
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O
40.07
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4.878
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8
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1
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1
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40.19
-6.545
2.410
4.476
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8
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1
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O
32.47
-5.070
0.495
4.055
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8
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1
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34.63
-3.859
0.688
4.948
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8
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1
8
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33.75
-2.759
-0.275
4.828
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8
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A
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1
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1
N
34.45
-1.534
0.199
4.416
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8
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1
8
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1
C
36.56
-1.339
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8
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A
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1
8
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1
O
35.51
-0.558
-0.763
4.329
A
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8
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A
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1
8
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1
N
27.69
-0.685
-2.118
4.610
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8
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1
8
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1
C
30.79
0.295
-2.849
4.482
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8
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1
8
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O
25.61
-1.996
-2.542
5.037
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8
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A
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1
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C
36.03
-2.231
-3.988
5.364
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8
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A
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1
8
1.00
1
C
28.65
-2.956
-1.611
5.126
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8
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A
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1
8
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1
C
44.91
-6.999
2.716
2.967
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9
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A
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1
9
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P
50.69
-8.202
3.585
3.026
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9
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1
9
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1
O
36.92
-7.021
1.434
2.226
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9
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1
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O
39.88
-5.808
3.599
2.375
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9
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O
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-4.782
4.140
3.215
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9
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DC
1
9
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C
26.56
-3.609
4.570
2.372
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9
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DC
1
9
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C
24.64
-2.652
3.506
2.259
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9
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1
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O
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-3.898
4.999
0.938
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9
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DC
1
9
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C
38.04
-3.143
6.169
0.629
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9
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DC
1
9
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O
29.83
-3.520
3.781
0.125
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9
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DC
1
9
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C
30.77
-2.333
3.239
0.885
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9
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A
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DC
1
9
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1
C
23.13
-2.043
1.795
0.905
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9
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A
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DC
1
9
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1
N
27.75
-0.736
1.387
0.632
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9
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1
9
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1
C
28.54
0.153
2.220
0.377
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9
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1
9
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1
O
28.78
-0.438
0.068
0.646
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9
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1
9
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1
N
26.67
-1.395
-0.826
0.921
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9
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A
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DC
1
9
1.00
1
C
33.07
-1.036
-2.113
0.917
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N4
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9
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A
N4
DC
1
9
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1
N
23.59
-2.733
-0.436
1.203
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9
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A
C5
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1
9
1.00
1
C
24.83
-3.011
0.877
1.186
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9
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A
C6
DC
1
9
1.00
1
C
39.50
-3.507
7.154
-0.586
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10
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A
P
DG
1
10
1.00
1
P
37.83
-2.953
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-0.275
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10
ATOM
A
OP1
DG
1
10
1.00
1
O
36.31
-4.945
7.005
-0.889
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10
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DG
1
10
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1
O
32.40
-2.658
6.545
-1.801
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10
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1
10
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O
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-1.229
6.541
-1.762
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10
ATOM
A
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DG
1
10
1.00
1
C
43.90
-0.650
5.773
-2.924
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10
ATOM
A
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DG
1
10
1.00
1
C
43.94
-0.622
4.346
-2.600
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10
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A
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DG
1
10
1.00
1
O
49.90
-1.418
5.858
-4.226
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10
ATOM
A
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DG
1
10
1.00
1
C
55.30
-0.578
5.796
-5.367
A
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10
ATOM
A
O3'
DG
1
10
1.00
1
O
48.91
-2.317
4.638
-4.152
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10
ATOM
A
C2'
DG
1
10
1.00
1
C
45.91
-1.212
3.662
-3.710
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10
ATOM
A
C1'
DG
1
10
1.00
1
C
39.38
-1.668
2.333
-3.320
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10
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A
N9
DG
1
10
1.00
1
N
40.31
-2.940
1.880
-3.059
A
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10
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C8
DG
1
10
1.00
1
C
35.06
-2.975
0.612
-2.733
A
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10
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A
N7
DG
1
10
1.00
1
N
24.83
-1.644
0.205
-2.783
A
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10
ATOM
A
C5
DG
1
10
1.00
1
C
27.71
-1.050
-1.057
-2.531
A
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10
ATOM
A
C6
DG
1
10
1.00
1
C
30.71
-1.598
-2.112
-2.200
A
O6
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10
ATOM
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O6
DG
1
10
1.00
1
O
31.00
0.328
-1.021
-2.698
A
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10
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N1
DG
1
10
1.00
1
N
34.11
1.049
0.089
-3.063
A
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10
ATOM
A
C2
DG
1
10
1.00
1
C
22.01
2.370
-0.083
-3.172
A
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10
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A
N2
DG
1
10
1.00
1
N
33.76
0.510
1.273
-3.302
A
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10
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A
N3
DG
1
10
1.00
1
N
26.20
-0.828
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-3.141
A
C4
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10
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A
C4
DG
1
10
1.00
1
C
58.78
0.133
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-6.059
A
P
DC
11
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A
P
DC
1
11
1.00
1
P
57.72
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-5.059
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11
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A
OP1
DC
1
11
1.00
1
O
68.10
-0.527
7.289
-7.367
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OP2
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11
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A
OP2
DC
1
11
1.00
1
O
49.72
1.618
6.520
-6.341
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11
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DC
1
11
1.00
1
O
48.33
2.510
6.422
-5.222
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11
ATOM
A
C5'
DC
1
11
1.00
1
C
45.17
3.675
5.527
-5.543
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11
ATOM
A
C4'
DC
1
11
1.00
1
C
43.48
3.292
4.138
-5.390
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11
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A
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DC
1
11
1.00
1
O
42.83
4.203
5.606
-6.969
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11
ATOM
A
C3'
DC
1
11
1.00
1
C
42.79
5.586
5.284
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11
ATOM
A
O3'
DC
1
11
1.00
1
O
42.69
3.338
4.609
-7.698
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11
ATOM
A
C2'
DC
1
11
1.00
1
C
40.18
3.261
3.497
-6.671
A
C1'
DC
11
ATOM
A
C1'
DC
1
11
1.00
1
C
32.87
2.039
2.695
-6.637
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N1
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11
ATOM
A
N1
DC
1
11
1.00
1
N
31.07
2.157
1.361
-6.232
A
C2
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11
ATOM
A
C2
DC
1
11
1.00
1
C
29.16
3.289
0.963
-5.939
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O2
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11
ATOM
A
O2
DC
1
11
1.00
1
O
37.68
1.058
0.578
-6.182
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N3
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11
ATOM
A
N3
DC
1
11
1.00
1
N
38.04
-0.127
1.100
-6.517
A
C4
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11
ATOM
A
C4
DC
1
11
1.00
1
C
34.84
-1.196
0.305
-6.459
A
N4
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11
ATOM
A
N4
DC
1
11
1.00
1
N
36.15
-0.275
2.455
-6.931
A
C5
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11
ATOM
A
C5
DC
1
11
1.00
1
C
33.25
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3.216
-6.976
A
C6
DC
11
ATOM
A
C6
DC
1
11
1.00
1
C
54.06
6.592
5.709
-8.164
A
P
DG
12
ATOM
A
P
DG
1
12
1.00
1
P
47.89
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-7.553
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OP1
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12
ATOM
A
OP1
DG
1
12
1.00
1
O
70.38
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6.812
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A
OP2
DG
12
ATOM
A
OP2
DG
1
12
1.00
1
O
51.86
6.664
4.419
-9.095
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O5'
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12
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A
O5'
DG
1
12
1.00
1
O
39.49
7.365
3.257
-8.625
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12
ATOM
A
C5'
DG
1
12
1.00
1
C
37.51
7.238
2.155
-9.652
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C4'
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12
ATOM
A
C4'
DG
1
12
1.00
1
C
32.20
6.060
1.386
-9.366
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12
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A
O4'
DG
1
12
1.00
1
O
32.50
7.094
2.646
-11.085
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12
ATOM
A
C3'
DG
1
12
1.00
1
C
47.75
8.291
2.372
-11.818
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12
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O3'
DG
1
12
1.00
1
O
30.94
5.926
1.908
-11.673
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12
ATOM
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C2'
DG
1
12
1.00
1
C
36.26
5.396
1.020
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A
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12
ATOM
A
C1'
DG
1
12
1.00
1
C
32.16
3.950
1.177
-10.327
A
N9
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12
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A
N9
DG
1
12
1.00
1
N
31.02
3.198
2.326
-10.405
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C8
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12
ATOM
A
C8
DG
1
12
1.00
1
C
30.92
1.945
2.124
-10.131
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12
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A
N7
DG
1
12
1.00
1
N
23.78
1.851
0.772
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12
ATOM
A
C5
DG
1
12
1.00
1
C
40.90
0.737
-0.027
-9.491
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C6
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12
ATOM
A
C6
DG
1
12
1.00
1
C
43.87
-0.447
0.312
-9.333
A
O6
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12
ATOM
A
O6
DG
1
12
1.00
1
O
37.93
1.106
-1.355
-9.305
A
N1
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12
ATOM
A
N1
DG
1
12
1.00
1
N
35.77
2.375
-1.855
-9.448
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C2
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12
ATOM
A
C2
DG
1
12
1.00
1
C
44.29
2.550
-3.167
-9.229
A
N2
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12
ATOM
A
N2
DG
1
12
1.00
1
N
32.78
3.420
-1.119
-9.786
A
N3
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12
ATOM
A
N3
DG
1
12
1.00
1
N
22.09
3.083
0.174
-9.971
A
C4
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12
ATOM
A
C4
DG
1
12
1.00
1
C
46.98
-4.451
-8.639
-10.061
B
O5'
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1
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B
O5'
DC
1
1
0.50
1
O
45.34
-3.432
-9.646
-10.139
B
C5'
DC
1
ATOM
B
C5'
DC
1
1
1.00
1
C
38.58
-2.123
-9.078
-9.630
B
C4'
DC
1
ATOM
B
C4'
DC
1
1
1.00
1
C
32.70
-2.121
-7.644
-9.818
B
O4'
DC
1
ATOM
B
O4'
DC
1
1
1.00
1
O
43.00
-1.852
-9.287
-8.155
B
C3'
DC
1
ATOM
B
C3'
DC
1
1
1.00
1
C
53.76
-0.712
-10.138
-7.968
B
O3'
DC
1
ATOM
B
O3'
DC
1
1
1.00
1
O
34.43
-1.594
-7.923
-7.571
B
C2'
DC
1
ATOM
B
C2'
DC
1
1
1.00
1
C
30.68
-1.322
-7.070
-8.793
B
C1'
DC
1
ATOM
B
C1'
DC
1
1
1.00
1
C
37.08
-1.717
-5.663
-8.695
B
N1
DC
1
ATOM
B
N1
DC
1
1
1.00
1
N
32.80
-0.720
-4.691
-8.826
B
C2
DC
1
ATOM
B
C2
DC
1
1
1.00
1
C
31.97
0.448
-5.058
-9.019
B
O2
DC
1
ATOM
B
O2
DC
1
1
1.00
1
O
38.01
-1.064
-3.390
-8.737
B
N3
DC
1
ATOM
B
N3
DC
1
1
1.00
1
N
42.31
-2.336
-3.040
-8.528
B
C4
DC
1
ATOM
B
C4
DC
1
1
1.00
1
C
46.41
-2.607
-1.733
-8.451
B
N4
DC
1
ATOM
B
N4
DC
1
1
1.00
1
N
39.64
-3.372
-4.012
-8.390
B
C5
DC
1
ATOM
B
C5
DC
1
1
1.00
1
C
41.01
-3.018
-5.302
-8.480
B
C6
DC
1
ATOM
B
C6
DC
1
1
1.00
1
C
57.19
-0.563
-10.761
-6.485
B
P
DG
2
ATOM
B
P
DG
1
2
1.00
1
P
69.59
-0.912
-12.199
-6.571
B
OP1
DG
2
ATOM
B
OP1
DG
1
2
1.00
1
O
55.24
-1.316
-9.862
-5.572
B
OP2
DG
2
ATOM
B
OP2
DG
1
2
1.00
1
O
51.78
0.986
-10.623
-6.165
B
O5'
DG
2
ATOM
B
O5'
DG
1
2
1.00
1
O
44.46
1.916
-10.293
-7.205
B
C5'
DG
2
ATOM
B
C5'
DG
1
2
1.00
1
C
27.13
2.942
-9.319
-6.675
B
C4'
DG
2
ATOM
B
C4'
DG
1
2
1.00
1
C
35.13
2.455
-7.972
-6.884
B
O4'
DG
2
ATOM
B
O4'
DG
1
2
1.00
1
O
27.17
3.239
-9.464
-5.191
B
C3'
DG
2
ATOM
B
C3'
DG
1
2
1.00
1
C
33.21
4.646
-9.574
-4.971
B
O3'
DG
2
ATOM
B
O3'
DG
1
2
1.00
1
O
20.44
2.678
-8.223
-4.560
B
C2'
DG
2
ATOM
B
C2'
DG
1
2
1.00
1
C
34.86
2.696
-7.225
-5.708
B
C1'
DG
2
ATOM
B
C1'
DG
1
2
1.00
1
C
31.66
1.657
-6.206
-5.567
B
N9
DG
2
ATOM
B
N9
DG
1
2
1.00
1
N
34.24
0.341
-6.446
-5.248
B
C8
DG
2
ATOM
B
C8
DG
1
2
1.00
1
C
31.21
-0.368
-5.358
-5.188
B
N7
DG
2
ATOM
B
N7
DG
1
2
1.00
1
N
27.44
0.534
-4.351
-5.484
B
C5
DG
2
ATOM
B
C5
DG
1
2
1.00
1
C
23.58
0.319
-2.952
-5.564
B
C6
DG
2
ATOM
B
C6
DG
1
2
1.00
1
C
37.80
-0.740
-2.349
-5.380
B
O6
DG
2
ATOM
B
O6
DG
1
2
1.00
1
O
19.34
1.487
-2.293
-5.888
B
N1
DG
2
ATOM
B
N1
DG
1
2
1.00
1
N
22.88
2.704
-2.880
-6.109
B
C2
DG
2
ATOM
B
C2
DG
1
2
1.00
1
C
20.51
3.709
-2.043
-6.412
B
N2
DG
2
ATOM
B
N2
DG
1
2
1.00
1
N
30.61
2.920
-4.182
-6.038
B
N3
DG
2
ATOM
B
N3
DG
1
2
1.00
1
N
33.45
1.792
-4.852
-5.722
B
C4
DG
2
ATOM
B
C4
DG
1
2
1.00
1
C
41.35
5.263
-9.737
-3.497
B
P
5HC
3
HETATM
B
P
5HC
1
3
1.00
1
P
45.00
6.403
-10.682
-3.590
B
OP1
5HC
3
HETATM
B
OP1
5HC
1
3
1.00
1
O
30.12
4.156
-9.961
-2.544
B
OP2
5HC
3
HETATM
B
OP2
5HC
1
3
1.00
1
O
40.07
5.874
-8.291
-3.201
B
O5'
5HC
3
HETATM
B
O5'
5HC
1
3
1.00
1
O
36.67
6.648
-7.618
-4.209
B
C5'
5HC
3
HETATM
B
C5'
5HC
1
3
1.00
1
C
31.29
6.738
-6.154
-3.839
B
C4'
5HC
3
HETATM
B
C4'
5HC
1
3
1.00
1
C
30.00
5.487
-5.499
-4.097
B
O4'
5HC
3
HETATM
B
O4'
5HC
1
3
1.00
1
O
28.80
7.026
-5.905
-2.368
B
C3'
5HC
3
HETATM
B
C3'
5HC
1
3
1.00
1
C
32.35
8.422
-5.695
-2.175
B
O3'
5HC
3
HETATM
B
O3'
5HC
1
3
1.00
1
O
32.83
6.232
-4.684
-1.999
B
C2'
5HC
3
HETATM
B
C2'
5HC
1
3
1.00
1
C
32.75
5.240
-4.497
-3.122
B
C1'
5HC
3
HETATM
B
C1'
5HC
1
3
1.00
1
C
38.62
3.833
-4.673
-2.723
B
N1
5HC
3
HETATM
B
N1
5HC
1
3
1.00
1
N
35.96
3.017
-3.539
-2.770
B
C2
5HC
3
HETATM
B
C2
5HC
1
3
1.00
1
C
39.89
3.549
-2.482
-3.145
B
O2
5HC
3
HETATM
B
O2
5HC
1
3
1.00
1
O
31.56
1.722
-3.649
-2.414
B
N3
5HC
3
HETATM
B
N3
5HC
1
3
1.00
1
N
30.90
1.234
-4.830
-2.025
B
C4
5HC
3
HETATM
B
C4
5HC
1
3
1.00
1
C
36.83
-0.055
-4.866
-1.688
B
N4
5HC
3
HETATM
B
N4
5HC
1
3
1.00
1
N
33.20
2.042
-6.001
-1.966
B
C5
5HC
3
HETATM
B
C5
5HC
1
3
1.00
1
C
34.47
1.468
-7.309
-1.526
B
C5M
5HC
3
HETATM
B
C5M
5HC
1
3
1.00
1
C
36.43
0.702
-7.157
-0.331
B
O5
5HC
3
HETATM
B
O5
5HC
1
3
1.00
1
O
37.98
3.332
-5.879
-2.324
B
C6
5HC
3
HETATM
B
C6
5HC
1
3
1.00
1
C
38.96
9.043
-5.479
-0.711
B
P
DG
4
ATOM
B
P
DG
1
4
1.00
1
P
37.85
10.437
-6.001
-0.757
B
OP1
DG
4
ATOM
B
OP1
DG
1
4
1.00
1
O
43.96
8.100
-6.052
0.283
B
OP2
DG
4
ATOM
B
OP2
DG
1
4
1.00
1
O
30.37
9.084
-3.905
-0.519
B
O5'
DG
4
ATOM
B
O5'
DG
1
4
1.00
1
O
30.46
9.749
-3.043
-1.448
B
C5'
DG
4
ATOM
B
C5'
DG
1
4
1.00
1
C
32.36
9.399
-1.596
-1.173
B
C4'
DG
4
ATOM
B
C4'
DG
1
4
1.00
1
C
28.93
7.958
-1.409
-1.211
B
O4'
DG
4
ATOM
B
O4'
DG
1
4
1.00
1
O
31.90
9.829
-1.071
0.187
B
C3'
DG
4
ATOM
B
C3'
DG
1
4
1.00
1
C
36.04
10.304
0.264
0.076
B
O3'
DG
4
ATOM
B
O3'
DG
1
4
1.00
1
O
33.28
8.584
-1.153
1.037
B
C2'
DG
4
ATOM
B
C2'
DG
1
4
1.00
1
C
32.79
7.490
-0.882
0.020
B
C1'
DG
4
ATOM
B
C1'
DG
1
4
1.00
1
C
32.50
6.215
-1.544
0.316
B
N9
DG
4
ATOM
B
N9
DG
1
4
1.00
1
N
35.05
6.051
-2.828
0.788
B
C8
DG
4
ATOM
B
C8
DG
1
4
1.00
1
C
32.65
4.806
-3.152
0.959
B
N7
DG
4
ATOM
B
N7
DG
1
4
1.00
1
N
27.58
4.104
-2.019
0.579
B
C5
DG
4
ATOM
B
C5
DG
1
4
1.00
1
C
25.67
2.707
-1.778
0.552
B
C6
DG
4
ATOM
B
C6
DG
1
4
1.00
1
C
25.34
1.794
-2.543
0.869
B
O6
DG
4
ATOM
B
O6
DG
1
4
1.00
1
O
28.34
2.415
-0.499
0.102
B
N1
DG
4
ATOM
B
N1
DG
1
4
1.00
1
N
32.49
3.349
0.435
-0.277
B
C2
DG
4
ATOM
B
C2
DG
1
4
1.00
1
C
31.21
2.871
1.622
-0.687
B
N2
DG
4
ATOM
B
N2
DG
1
4
1.00
1
N
33.50
4.653
0.221
-0.256
B
N3
DG
4
ATOM
B
N3
DG
1
4
1.00
1
N
25.05
4.959
-1.018
0.179
B
C4
DG
4
ATOM
B
C4
DG
1
4
1.00
1
C
36.57
10.370
1.268
1.322
B
P
DA
5
ATOM
B
P
DA
1
5
1.00
1
P
38.58
11.529
2.171
1.098
B
OP1
DA
5
ATOM
B
OP1
DA
1
5
1.00
1
O
38.24
10.317
0.453
2.557
B
OP2
DA
5
ATOM
B
OP2
DA
1
5
1.00
1
O
36.98
9.043
2.155
1.243
B
O5'
DA
5
ATOM
B
O5'
DA
1
5
1.00
1
O
30.06
8.352
2.454
0.033
B
C5'
DA
5
ATOM
B
C5'
DA
1
5
1.00
1
C
33.28
7.402
3.614
0.145
B
C4'
DA
5
ATOM
B
C4'
DA
1
5
1.00
1
C
32.34
6.065
3.118
0.462
B
O4'
DA
5
ATOM
B
O4'
DA
1
5
1.00
1
O
35.08
7.645
4.638
1.244
B
C3'
DA
5
ATOM
B
C3'
DA
1
5
1.00
1
C
33.67
7.077
5.896
0.899
B
O3'
DA
5
ATOM
B
O3'
DA
1
5
1.00
1
O
30.82
6.975
4.030
2.441
B
C2'
DA
5
ATOM
B
C2'
DA
1
5
1.00
1
C
33.57
5.747
3.377
1.824
B
C1'
DA
5
ATOM
B
C1'
DA
1
5
1.00
1
C
31.40
5.367
2.089
2.421
B
N9
DA
5
ATOM
B
N9
DA
1
5
1.00
1
N
24.14
6.233
1.086
2.782
B
C8
DA
5
ATOM
B
C8
DA
1
5
1.00
1
C
21.49
5.640
0.033
3.293
B
N7
DA
5
ATOM
B
N7
DA
1
5
1.00
1
N
26.38
4.289
0.381
3.262
B
C5
DA
5
ATOM
B
C5
DA
1
5
1.00
1
C
27.84
3.137
-0.311
3.667
B
C6
DA
5
ATOM
B
C6
DA
1
5
1.00
1
C
48.93
3.175
-1.537
4.199
B
N6
DA
5
ATOM
B
N6
DA
1
5
1.00
1
N
28.12
1.942
0.286
3.514
B
N1
DA
5
ATOM
B
N1
DA
1
5
1.00
1
N
31.23
1.912
1.516
2.978
B
C2
DA
5
ATOM
B
C2
DA
1
5
1.00
1
C
22.28
2.926
2.264
2.561
B
N3
DA
5
ATOM
B
N3
DA
1
5
1.00
1
N
22.65
4.106
1.644
2.727
B
C4
DA
5
ATOM
B
C4
DA
1
5
1.00
1
C
40.58
7.133
7.172
1.866
B
P
DA
6
ATOM
B
P
DA
1
6
1.00
1
P
49.93
7.288
8.372
1.002
B
OP1
DA
6
ATOM
B
OP1
DA
1
6
1.00
1
O
33.39
8.105
6.879
2.954
B
OP2
DA
6
ATOM
B
OP2
DA
1
6
1.00
1
O
31.72
5.701
7.264
2.558
B
O5'
DA
6
ATOM
B
O5'
DA
1
6
1.00
1
O
39.07
4.453
6.984
1.930
B
C5'
DA
6
ATOM
B
C5'
DA
1
6
1.00
1
C
42.31
3.365
6.824
2.973
B
C4'
DA
6
ATOM
B
C4'
DA
1
6
1.00
1
C
34.73
3.292
5.443
3.405
B
O4'
DA
6
ATOM
B
O4'
DA
1
6
1.00
1
O
41.90
3.567
7.650
4.238
B
C3'
DA
6
ATOM
B
C3'
DA
1
6
1.00
1
C
49.80
2.623
8.724
4.262
B
O3'
DA
6
ATOM
B
O3'
DA
1
6
1.00
1
O
39.77
3.369
6.705
5.388
B
C2'
DA
6
ATOM
B
C2'
DA
1
6
1.00
1
C
41.12
2.845
5.430
4.765
B
C1'
DA
6
ATOM
B
C1'
DA
1
6
1.00
1
C
31.25
3.348
4.177
5.341
B
N9
DA
6
ATOM
B
N9
DA
1
6
1.00
1
N
25.62
4.663
3.836
5.557
B
C8
DA
6
ATOM
B
C8
DA
1
6
1.00
1
C
23.44
4.805
2.641
6.090
B
N7
DA
6
ATOM
B
N7
DA
1
6
1.00
1
N
22.82
3.513
2.180
6.228
B
C5
DA
6
ATOM
B
C5
DA
1
6
1.00
1
C
22.77
3.003
0.976
6.732
B
C6
DA
6
ATOM
B
C6
DA
1
6
1.00
1
C
26.83
3.804
0.015
7.195
B
N6
DA
6
ATOM
B
N6
DA
1
6
1.00
1
N
27.16
1.666
0.817
6.736
B
N1
DA
6
ATOM
B
N1
DA
1
6
1.00
1
N
21.05
0.897
1.804
6.263
B
C2
DA
6
ATOM
B
C2
DA
1
6
1.00
1
C
23.72
1.262
2.981
5.764
B
N3
DA
6
ATOM
B
N3
DA
1
6
1.00
1
N
25.60
2.599
3.113
5.773
B
C4
DA
6
ATOM
B
C4
DA
1
6
1.00
1
C
47.56
2.206
9.470
5.623
B
P
DT
7
ATOM
B
P
DT
1
7
1.00
1
P
50.77
1.388
10.649
5.241
B
OP1
DT
7
ATOM
B
OP1
DT
1
7
1.00
1
O
49.81
3.427
9.618
6.452
B
OP2
DT
7
ATOM
B
OP2
DT
1
7
1.00
1
O
42.34
1.237
8.438
6.364
B
O5'
DT
7
ATOM
B
O5'
DT
1
7
1.00
1
O
42.02
-0.082
8.197
5.862
B
C5'
DT
7
ATOM
B
C5'
DT
1
7
1.00
1
C
43.49
-0.804
7.208
6.747
B
C4'
DT
7
ATOM
B
C4'
DT
1
7
1.00
1
C
42.17
0.049
6.058
6.972
B
O4'
DT
7
ATOM
B
O4'
DT
1
7
1.00
1
O
42.93
-1.178
7.729
8.128
B
C3'
DT
7
ATOM
B
C3'
DT
1
7
1.00
1
C
48.78
-2.595
7.728
8.288
B
O3'
DT
7
ATOM
B
O3'
DT
1
7
1.00
1
O
40.41
-0.497
6.798
9.100
B
C2'
DT
7
ATOM
B
C2'
DT
1
7
1.00
1
C
38.03
-0.231
5.552
8.274
B
C1'
DT
7
ATOM
B
C1'
DT
1
7
1.00
1
C
35.00
0.915
4.731
8.679
B
N1
DT
7
ATOM
B
N1
DT
1
7
1.00
1
N
39.01
0.674
3.497
9.241
B
C2
DT
7
ATOM
B
C2
DT
1
7
1.00
1
C
47.44
-0.441
3.032
9.429
B
O2
DT
7
ATOM
B
O2
DT
1
7
1.00
1
O
30.82
1.806
2.803
9.586
B
N3
DT
7
ATOM
B
N3
DT
1
7
1.00
1
N
29.32
3.118
3.197
9.437
B
C4
DT
7
ATOM
B
C4
DT
1
7
1.00
1
C
27.04
4.031
2.461
9.796
B
O4
DT
7
ATOM
B
O4
DT
1
7
1.00
1
O
25.71
3.299
4.502
8.841
B
C5
DT
7
ATOM
B
C5
DT
1
7
1.00
1
C
31.52
4.696
5.007
8.640
B
C7
DT
7
ATOM
B
C7
DT
1
7
1.00
1
C
26.15
2.203
5.187
8.501
B
C6
DT
7
ATOM
B
C6
DT
1
7
1.00
1
C
49.59
-3.317
8.274
9.619
B
P
DT
8
ATOM
B
P
DT
1
8
1.00
1
P
58.50
-4.674
8.726
9.226
B
OP1
DT
8
ATOM
B
OP1
DT
1
8
1.00
1
O
38.42
-2.393
9.214
10.298
B
OP2
DT
8
ATOM
B
OP2
DT
1
8
1.00
1
O
40.74
-3.463
6.964
10.522
B
O5'
DT
8
ATOM
B
O5'
DT
1
8
1.00
1
O
39.87
-3.989
5.761
9.955
B
C5'
DT
8
ATOM
B
C5'
DT
1
8
1.00
1
C
38.28
-4.085
4.649
10.963
B
C4'
DT
8
ATOM
B
C4'
DT
1
8
1.00
1
C
36.44
-2.797
3.978
11.090
B
O4'
DT
8
ATOM
B
O4'
DT
1
8
1.00
1
O
41.61
-4.424
5.046
12.397
B
C3'
DT
8
ATOM
B
C3'
DT
1
8
1.00
1
C
54.47
-5.197
4.028
13.005
B
O3'
DT
8
ATOM
B
O3'
DT
1
8
1.00
1
O
32.27
-3.073
5.220
13.041
B
C2'
DT
8
ATOM
B
C2'
DT
1
8
1.00
1
C
38.20
-2.410
3.970
12.464
B
C1'
DT
8
ATOM
B
C1'
DT
1
8
1.00
1
C
37.57
-0.952
3.928
12.513
B
N1
DT
8
ATOM
B
N1
DT
1
8
1.00
1
N
32.50
-0.335
2.747
12.847
B
C2
DT
8
ATOM
B
C2
DT
1
8
1.00
1
C
39.24
-0.932
1.718
13.109
B
O2
DT
8
ATOM
B
O2
DT
1
8
1.00
1
O
29.28
1.035
2.816
12.862
B
N3
DT
8
ATOM
B
N3
DT
1
8
1.00
1
N
33.76
1.824
3.916
12.586
B
C4
DT
8
ATOM
B
C4
DT
1
8
1.00
1
C
31.66
3.043
3.799
12.648
B
O4
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8
ATOM
B
O4
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1
8
1.00
1
O
34.42
1.106
5.121
12.242
B
C5
DT
8
ATOM
B
C5
DT
1
8
1.00
1
C
31.87
1.851
6.380
11.921
B
C7
DT
8
ATOM
B
C7
DT
1
8
1.00
1
C
29.94
-0.231
5.070
12.222
B
C6
DT
8
ATOM
B
C6
DT
1
8
1.00
1
C
48.20
-6.303
4.178
14.147
B
P
DC
9
ATOM
B
P
DC
1
9
1.00
1
P
70.12
-7.609
3.760
13.566
B
OP1
DC
9
ATOM
B
OP1
DC
1
9
1.00
1
O
38.49
-6.156
5.500
14.781
B
OP2
DC
9
ATOM
B
OP2
DC
1
9
1.00
1
O
45.40
-5.868
3.059
15.195
B
O5'
DC
9
ATOM
B
O5'
DC
1
9
1.00
1
O
41.57
-5.282
1.829
14.742
B
C5'
DC
9
ATOM
B
C5'
DC
1
9
1.00
1
C
40.66
-4.400
1.286
15.842
B
C4'
DC
9
ATOM
B
C4'
DC
1
9
1.00
1
C
33.16
-3.020
1.602
15.571
B
O4'
DC
9
ATOM
B
O4'
DC
1
9
1.00
1
O
36.28
-4.722
1.863
17.218
B
C3'
DC
9
ATOM
B
C3'
DC
1
9
1.00
1
C
47.32
-5.294
0.843
18.038
B
O3'
DC
9
ATOM
B
O3'
DC
1
9
1.00
1
O
42.32
-3.410
2.384
17.746
B
C2'
DC
9
ATOM
B
C2'
DC
1
9
1.00
1
C
40.87
-2.365
1.778
16.838
B
C1'
DC
9
ATOM
B
C1'
DC
1
9
1.00
1
C
36.71
-1.171
2.575
16.525
B
N1
DC
9
ATOM
B
N1
DC
1
9
1.00
1
N
31.80
0.077
1.966
16.697
B
C2
DC
9
ATOM
B
C2
DC
1
9
1.00
1
C
37.00
0.095
0.796
17.108
B
O2
DC
9
ATOM
B
O2
DC
1
9
1.00
1
O
28.59
1.203
2.662
16.418
B
N3
DC
9
ATOM
B
N3
DC
1
9
1.00
1
N
23.49
1.108
3.918
15.981
B
C4
DC
9
ATOM
B
C4
DC
1
9
1.00
1
C
41.19
2.230
4.579
15.714
B
N4
DC
9
ATOM
B
N4
DC
1
9
1.00
1
N
34.76
-0.152
4.559
15.793
B
C5
DC
9
ATOM
B
C5
DC
1
9
1.00
1
C
34.67
-1.258
3.858
16.074
B
C6
DC
9
ATOM
B
C6
DC
1
9
1.00
1
C
56.34
-5.970
1.174
19.462
B
P
DG
10
ATOM
B
P
DG
1
10
1.00
1
P
61.74
-7.004
0.146
19.719
B
OP1
DG
10
ATOM
B
OP1
DG
1
10
1.00
1
O
56.09
-6.318
2.612
19.497
B
OP2
DG
10
ATOM
B
OP2
DG
1
10
1.00
1
O
58.87
-4.761
0.923
20.482
B
O5'
DG
10
ATOM
B
O5'
DG
1
10
1.00
1
O
55.37
-4.137
-0.368
20.492
B
C5'
DG
10
ATOM
B
C5'
DG
1
10
1.00
1
C
46.18
-2.917
-0.375
21.376
B
C4'
DG
10
ATOM
B
C4'
DG
1
10
1.00
1
C
39.96
-1.852
0.397
20.742
B
O4'
DG
10
ATOM
B
O4'
DG
1
10
1.00
1
O
43.61
-3.084
0.250
22.749
B
C3'
DG
10
ATOM
B
C3'
DG
1
10
1.00
1
C
54.47
-2.299
-0.421
23.720
B
O3'
DG
10
ATOM
B
O3'
DG
1
10
1.00
1
O
35.30
-2.613
1.669
22.541
B
C2'
DG
10
ATOM
B
C2'
DG
1
10
1.00
1
C
36.46
-1.378
1.332
21.713
B
C1'
DG
10
ATOM
B
C1'
DG
1
10
1.00
1
C
31.81
-0.764
2.446
21.000
B
N9
DG
10
ATOM
B
N9
DG
1
10
1.00
1
N
37.82
-1.336
3.602
20.539
B
C8
DG
10
ATOM
B
C8
DG
1
10
1.00
1
C
41.49
-0.479
4.385
19.941
B
N7
DG
10
ATOM
B
N7
DG
1
10
1.00
1
N
26.22
0.725
3.700
20.014
B
C5
DG
10
ATOM
B
C5
DG
1
10
1.00
1
C
27.82
2.014
4.043
19.541
B
C6
DG
10
ATOM
B
C6
DG
1
10
1.00
1
C
32.25
2.341
5.068
18.940
B
O6
DG
10
ATOM
B
O6
DG
1
10
1.00
1
O
34.45
2.953
3.056
19.831
B
N1
DG
10
ATOM
B
N1
DG
1
10
1.00
1
N
26.34
2.686
1.885
20.493
B
C2
DG
10
ATOM
B
C2
DG
1
10
1.00
1
C
22.16
3.722
1.053
20.681
B
N2
DG
10
ATOM
B
N2
DG
1
10
1.00
1
N
20.23
1.487
1.552
20.940
B
N3
DG
10
ATOM
B
N3
DG
1
10
1.00
1
N
25.47
0.573
2.502
20.663
B
C4
DG
10
ATOM
B
C4
DG
1
10
1.00
1
C
50.64
-2.829
-0.760
25.195
B
P
DC
11
ATOM
A
B
P
DC
1
11
0.50
1
P
50.67
-2.836
-0.780
25.188
B
P
DC
11
ATOM
B
B
P
DC
1
11
0.50
1
P
52.92
-3.812
-1.863
25.094
B
OP1
DC
11
ATOM
A
B
OP1
DC
1
11
0.50
1
O
53.22
-3.794
-1.904
25.070
B
OP1
DC
11
ATOM
B
B
OP1
DC
1
11
0.50
1
O
43.18
-3.183
0.506
25.871
B
OP2
DC
11
ATOM
A
B
OP2
DC
1
11
0.50
1
O
42.21
-3.220
0.472
25.870
B
OP2
DC
11
ATOM
B
B
OP2
DC
1
11
0.50
1
O
43.24
-1.494
-1.340
25.858
B
O5'
DC
11
ATOM
B
O5'
DC
1
11
1.00
1
O
39.58
-0.929
-2.564
25.364
B
C5'
DC
11
ATOM
B
C5'
DC
1
11
1.00
1
C
35.25
0.571
-2.472
25.270
B
C4'
DC
11
ATOM
B
C4'
DC
1
11
1.00
1
C
31.79
0.972
-1.589
24.201
B
O4'
DC
11
ATOM
B
O4'
DC
1
11
1.00
1
O
34.23
1.242
-1.888
26.504
B
C3'
DC
11
ATOM
B
C3'
DC
1
11
1.00
1
C
36.27
1.521
-2.913
27.453
B
O3'
DC
11
ATOM
B
O3'
DC
1
11
1.00
1
O
32.75
2.503
-1.252
25.989
B
C2'
DC
11
ATOM
B
C2'
DC
1
11
1.00
1
C
34.78
2.163
-0.891
24.562
B
C1'
DC
11
ATOM
B
C1'
DC
1
11
1.00
1
C
34.06
1.848
0.530
24.319
B
N1
DC
11
ATOM
B
N1
DC
1
11
1.00
1
N
40.80
2.884
1.326
23.823
B
C2
DC
11
ATOM
B
C2
DC
1
11
1.00
1
C
39.96
3.992
0.805
23.622
B
O2
DC
11
ATOM
B
O2
DC
1
11
1.00
1
O
44.05
2.644
2.631
23.582
B
N3
DC
11
ATOM
B
N3
DC
1
11
1.00
1
N
36.89
1.435
3.142
23.814
B
C4
DC
11
ATOM
B
C4
DC
1
11
1.00
1
C
25.38
1.278
4.438
23.551
B
N4
DC
11
ATOM
B
N4
DC
1
11
1.00
1
N
41.08
0.365
2.347
24.318
B
C5
DC
11
ATOM
B
C5
DC
1
11
1.00
1
C
32.87
0.610
1.051
24.555
B
C6
DC
11
ATOM
B
C6
DC
1
11
1.00
1
C
39.74
1.922
-2.503
28.954
B
P
DG
12
ATOM
B
P
DG
1
12
1.00
1
P
39.45
1.898
-3.746
29.768
B
OP1
DG
12
ATOM
B
OP1
DG
1
12
1.00
1
O
37.86
1.055
-1.358
29.352
B
OP2
DG
12
ATOM
B
OP2
DG
1
12
1.00
1
O
37.49
3.404
-1.975
28.828
B
O5'
DG
12
ATOM
B
O5'
DG
1
12
1.00
1
O
29.18
4.589
-2.712
28.522
B
C5'
DG
12
ATOM
B
C5'
DG
1
12
1.00
1
C
29.09
5.723
-1.729
28.330
B
C4'
DG
12
ATOM
B
C4'
DG
1
12
1.00
1
C
29.64
5.358
-0.769
27.309
B
O4'
DG
12
ATOM
B
O4'
DG
1
12
1.00
1
O
28.13
6.073
-0.892
29.543
B
C3'
DG
12
ATOM
B
C3'
DG
1
12
1.00
1
C
27.65
7.067
-1.518
30.353
B
O3'
DG
12
ATOM
B
O3'
DG
1
12
1.00
1
O
34.45
6.601
0.398
28.976
B
C2'
DG
12
ATOM
B
C2'
DG
1
12
1.00
1
C
33.06
5.983
0.481
27.598
B
C1'
DG
12
ATOM
B
C1'
DG
1
12
1.00
1
C
21.31
4.917
1.486
27.462
B
N9
DG
12
ATOM
B
N9
DG
1
12
1.00
1
N
24.77
3.601
1.361
27.835
B
C8
DG
12
ATOM
B
C8
DG
1
12
1.00
1
C
24.99
2.899
2.430
27.584
B
N7
DG
12
ATOM
B
N7
DG
1
12
1.00
1
N
20.16
3.802
3.306
27.013
B
C5
DG
12
ATOM
B
C5
DG
1
12
1.00
1
C
25.37
3.624
4.623
26.533
B
C6
DG
12
ATOM
B
C6
DG
1
12
1.00
1
C
33.57
2.594
5.282
26.525
B
O6
DG
12
ATOM
B
O6
DG
1
12
1.00
1
O
25.51
4.802
5.169
26.025
B
N1
DG
12
ATOM
B
N1
DG
1
12
1.00
1
N
19.39
6.002
4.512
25.991
B
C2
DG
12
ATOM
B
C2
DG
1
12
1.00
1
C
30.01
7.036
5.186
25.468
B
N2
DG
12
ATOM
B
N2
DG
1
12
1.00
1
N
29.48
6.184
3.282
26.435
B
N3
DG
12
ATOM
B
N3
DG
1
12
1.00
1
N
20.37
5.053
2.742
26.928
B
C4
DG
12
ATOM
B
C4
DG
1
12
1.00
1
C
28.51
-1.914
-11.001
13.038
A
MG
MG
101
HETATM
C
MG
MG
2
0.50
1
MG
48.07
-1.138
4.152
4.752
A
K
K
102
HETATM
D
K
K
3
1.00
1
K
31.72
-2.110
-9.711
11.404
A
O
HOH
201
HETATM
E
O
HOH
4
1.00
1
O
30.17
-2.148
-12.184
11.327
A
O
HOH
202
HETATM
E
O
HOH
4
1.00
1
O
31.54
-1.910
-9.900
14.812
A
O
HOH
203
HETATM
E
O
HOH
4
0.50
1
O
21.14
-1.474
-12.267
14.647
A
O
HOH
204
HETATM
E
O
HOH
4
0.50
1
O
29.84
0.191
-10.816
12.768
A
O
HOH
205
HETATM
E
O
HOH
4
0.50
1
O
35.34
-4.026
-11.177
13.293
A
O
HOH
206
HETATM
E
O
HOH
4
0.50
1
O
40.57
1.015
-13.030
13.890
A
O
HOH
207
HETATM
E
O
HOH
4
1.00
1
O
45.15
4.807
-4.370
10.745
A
O
HOH
208
HETATM
E
O
HOH
4
1.00
1
O
44.29
-2.459
-0.775
12.752
A
O
HOH
209
HETATM
E
O
HOH
4
1.00
1
O
35.53
6.684
-1.784
9.812
A
O
HOH
210
HETATM
E
O
HOH
4
1.00
1
O
36.33
-4.284
1.199
-6.369
A
O
HOH
211
HETATM
E
O
HOH
4
1.00
1
O
27.57
-2.910
-6.464
8.351
A
O
HOH
212
HETATM
E
O
HOH
4
1.00
1
O
45.34
12.699
2.658
14.594
A
O
HOH
213
HETATM
E
O
HOH
4
1.00
1
O
33.54
-4.175
-6.746
6.230
A
O
HOH
214
HETATM
E
O
HOH
4
1.00
1
O
40.99
-1.316
8.042
1.944
A
O
HOH
215
HETATM
E
O
HOH
4
1.00
1
O
46.02
2.423
4.924
-1.327
A
O
HOH
216
HETATM
E
O
HOH
4
0.80
1
O
47.29
-6.089
-0.862
-4.790
A
O
HOH
217
HETATM
E
O
HOH
4
0.70
1
O
28.53
-0.161
-8.945
10.055
A
O
HOH
218
HETATM
E
O
HOH
4
0.80
1
O
25.69
1.374
4.534
1.404
A
O
HOH
219
HETATM
E
O
HOH
4
1.00
1
O
36.54
2.185
-5.623
1.507
B
O
HOH
101
HETATM
F
O
HOH
4
1.00
1
O
32.94
-3.033
4.220
6.590
B
O
HOH
102
HETATM
F
O
HOH
4
1.00
1
O
43.41
-3.314
-2.863
-4.446
B
O
HOH
103
HETATM
F
O
HOH
4
1.00
1
O
28.87
0.031
5.825
2.967
B
O
HOH
104
HETATM
F
O
HOH
4
1.00
1
O
56.39
0.725
-0.772
20.435
B
O
HOH
105
HETATM
F
O
HOH
4
1.00
1
O
58.08
11.106
6.359
4.315
B
O
HOH
106
HETATM
F
O
HOH
4
0.60
1
O
39.41
-4.283
0.914
10.080
B
O
HOH
107
HETATM
F
O
HOH
4
1.00
1
O
40.91
-8.557
3.086
17.999
B
O
HOH
108
HETATM
F
O
HOH
4
0.60
1
O
67.75
0.159
1.285
28.126
B
O
HOH
109
HETATM
F
O
HOH
4
0.50
1
O
29.84
-2.867
2.172
8.605
B
O
HOH
110
HETATM
F
O
HOH
4
1.00
1
O
0.039722
0.000000
0.000000
0.000000
0.024637
0.000000
0.000000
0.000000
0.015291
0.00000
0.00000
0.00000
Spingler, B.
Renciuk, D.
Vorlickova, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.175
40.590
65.399
C10 H16 N3 O8 P
337.223
n
2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
N
O
N
8
S
C
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
N
N
13
N
C
N
14
N
O
N
15
N
N
N
16
N
C
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
C
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
O
N
40
N
P
N
41
N
O
N
42
N
O
N
43
N
O
N
44
N
C
N
45
R
C
N
46
N
O
N
47
S
C
N
48
N
O
N
49
N
C
N
50
R
C
Y
51
N
N
Y
52
N
C
Y
53
N
N
Y
54
N
C
Y
55
N
C
N
56
N
N
Y
57
N
N
Y
58
N
C
Y
59
N
N
Y
60
N
C
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
O
N
76
N
P
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
C
N
81
R
C
N
82
N
O
N
83
S
C
N
84
N
O
N
85
N
C
N
86
R
C
N
87
N
N
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
C
N
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
Y
121
N
N
Y
122
N
C
Y
123
N
N
Y
124
N
C
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
N
Y
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
N
C
N
157
R
C
N
158
N
N
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
K
N
186
N
MG
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
doub
N
72
N
sing
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
sing
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
9891
9900
10.1093/nar/gkt738
23963698
Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine.
2013
10.2210/pdb4hli/pdb
pdb_00004hli
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
PIXEL
2012-06-09
DECTRIS PILATUS 2M-F
BARTELS MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.00067
1.0
1.000670
1.0
X06DA
SLS
1.00067
1.000670
SYNCHROTRON
SLS BEAMLINE X06DA
3693.418
DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
18.015
water
29
nat
water
no
yes
(DC)(DG)(5HC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)
CGXGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.27
45.73
VAPOR DIFFUSION, SITTING DROP
7.0
0.04m sodium cacodylate buffer, 0.08M NaCCl, 0.12m KCl, 0.02m MgCl2, 0.012m spermine tetra hydrochloride, 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
-5.343
1
19
A
1
B
12
-2.534
A_DC1:DG12_B
1
-4.489
0.076
0.576
-0.178
-0.280
1
19
A
2
B
11
0.027
A_DG2:DC11_B
2
-16.029
-0.396
0.302
-0.042
15.427
1
19
A
4
B
9
-3.836
A_DG4:DC9_B
3
-4.481
-0.710
-0.046
-0.108
4.870
1
20
A
5
B
8
2.021
A_DA5:DT8_B
4
-16.988
0.116
0.075
-0.256
6.074
1
20
A
6
B
7
0.749
A_DA6:DT7_B
5
-17.504
0.050
0.439
-0.265
-1.675
1
20
A
7
B
6
4.983
A_DT7:DA6_B
6
-22.231
0.115
0.224
-0.188
-5.236
1
20
A
8
B
5
4.739
A_DT8:DA5_B
7
-15.646
0.045
0.192
-0.080
-16.184
1
19
A
9
B
4
-2.285
A_DC9:DG4_B
8
-10.535
0.408
0.070
-0.134
9.181
1
19
A
11
B
2
-2.838
A_DC11:DG2_B
9
-21.989
0.325
-0.169
-0.169
10.500
1
19
A
12
B
1
2.410
A_DG12:DC1_B
10
-6.420
-0.154
0.248
0.038
3.277
35.219
A
A
1
2
-0.625
B
B
12
11
3.267
-0.378
-0.587
-0.141
AA_DC1DG2:DC11DG12_BB
1
-0.556
0.920
35.213
-0.177
0.887
6.454
66.039
A
A
2
4
-0.369
B
B
11
9
6.456
-0.402
-0.358
0.416
AA_DG2DG4:DC9DC11_BB
2
-0.012
0.011
66.038
0.414
0.327
3.451
39.117
A
A
4
5
4.133
B
B
9
8
3.491
2.764
0.095
-0.403
AA_DG4DA5:DT8DC9_BB
3
-1.274
1.905
39.003
-0.954
-0.304
3.034
37.381
A
A
5
6
-1.809
B
B
8
7
3.020
-1.158
-0.120
-0.514
AA_DA5DA6:DT7DT8_BB
4
-3.175
4.961
37.233
-0.660
-0.201
3.387
32.984
A
A
6
7
-1.174
B
B
7
6
3.370
-0.666
0.203
-0.713
AA_DA6DT7:DA6DT7_BB
5
3.275
-5.778
32.818
-1.138
0.219
3.239
34.277
A
A
7
8
-3.992
B
B
6
5
3.213
-2.350
-0.217
-0.403
AA_DT7DT8:DA5DA6_BB
6
-1.902
3.231
34.147
-0.319
0.072
3.503
42.469
A
A
8
9
-7.224
B
B
5
4
3.509
-5.219
-0.337
-0.306
AA_DT8DC9:DG4DA5_BB
7
1.879
-2.601
42.122
0.148
0.671
5.968
70.388
A
A
9
11
-4.708
B
B
4
2
6.031
-5.422
-0.077
0.683
AA_DC9DC11:DG2DG4_BB
8
1.928
-1.674
70.183
0.943
0.191
3.240
35.276
A
A
11
12
15.630
B
B
2
1
3.254
9.356
0.501
0.560
AA_DC11DG12:DC1DG2_BB
9
-2.799
4.675
33.939
-0.482
-1.247
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-09-04
1
1
2013-12-04
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-17
REL
REL
MG
MAGNESIUM ION
K
POTASSIUM ION
HOH
water
9606
Homo sapiens
sample
1DPN
PDB ENTRY 1DPN
PDB
experimental model
MO6
51
2
MG
MG
101
A
K
52
3
K
K
102
A
MO6
51
4
HOH
HOH
201
A
MO6
51
4
HOH
HOH
202
A
MO6
51
4
HOH
HOH
203
A
MO6
51
4
HOH
HOH
204
A
MO6
51
4
HOH
HOH
205
A
MO6
51
4
HOH
HOH
206
A
HOH
102
4
HOH
HOH
207
A
HOH
103
4
HOH
HOH
208
A
HOH
104
4
HOH
HOH
209
A
HOH
110
4
HOH
HOH
210
A
HOH
111
4
HOH
HOH
211
A
HOH
112
4
HOH
HOH
212
A
HOH
113
4
HOH
HOH
213
A
HOH
114
4
HOH
HOH
214
A
HOH
116
4
HOH
HOH
215
A
HOH
117
4
HOH
HOH
216
A
HOH
119
4
HOH
HOH
217
A
HOH
121
4
HOH
HOH
218
A
HOH
122
4
HOH
HOH
219
A
HOH
101
4
HOH
HOH
101
B
HOH
105
4
HOH
HOH
102
B
HOH
106
4
HOH
HOH
103
B
HOH
107
4
HOH
HOH
104
B
HOH
108
4
HOH
HOH
105
B
HOH
109
4
HOH
HOH
106
B
HOH
115
4
HOH
HOH
107
B
HOH
118
4
HOH
HOH
108
B
HOH
120
4
HOH
HOH
109
B
HOH
123
4
HOH
HOH
110
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
5HC
3
n
3
5HC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
1
n
1
DC
1
B
G
2
n
2
DG
2
B
5HC
3
n
3
5HC
3
B
G
4
n
4
DG
4
B
A
5
n
5
DA
5
B
A
6
n
6
DA
6
B
T
7
n
7
DT
7
B
T
8
n
8
DT
8
B
C
9
n
9
DC
9
B
G
10
n
10
DG
10
B
C
11
n
11
DC
11
B
G
12
n
12
DG
12
B
0.2461
0.2548
0.2429
0.2518
0.3180
0.3281
308
334
7.14
6.99
4315
author_and_software_defined_assembly
PISA
2
dimeric
1540
-7
4470
A
DT
8
A
O2
DT
8
1_555
A
K
102
D
K
K
1_555
A
DC
9
A
O4'
DC
9
1_555
65.0
A
DT
8
A
O2
DT
8
1_555
A
K
102
D
K
K
1_555
B
DT
7
B
O4'
DT
7
1_555
139.8
A
DC
9
A
O4'
DC
9
1_555
A
K
102
D
K
K
1_555
B
DT
7
B
O4'
DT
7
1_555
155.2
A
DT
8
A
O2
DT
8
1_555
A
K
102
D
K
K
1_555
B
HOH
102
F
O
HOH
1_555
97.0
A
DC
9
A
O4'
DC
9
1_555
A
K
102
D
K
K
1_555
B
HOH
102
F
O
HOH
1_555
102.9
B
DT
7
B
O4'
DT
7
1_555
A
K
102
D
K
K
1_555
B
HOH
102
F
O
HOH
1_555
76.4
A
DT
8
A
O2
DT
8
1_555
A
K
102
D
K
K
1_555
B
HOH
104
F
O
HOH
1_555
119.5
A
DC
9
A
O4'
DC
9
1_555
A
K
102
D
K
K
1_555
B
HOH
104
F
O
HOH
1_555
78.6
B
DT
7
B
O4'
DT
7
1_555
A
K
102
D
K
K
1_555
B
HOH
104
F
O
HOH
1_555
85.9
B
HOH
102
F
O
HOH
1_555
A
K
102
D
K
K
1_555
B
HOH
104
F
O
HOH
1_555
138.7
A
HOH
201
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
202
E
O
HOH
1_555
72.5
A
HOH
201
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
203
E
O
HOH
1_555
109.8
A
HOH
202
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
203
E
O
HOH
1_555
173.1
A
HOH
201
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
204
E
O
HOH
1_555
173.2
A
HOH
202
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
204
E
O
HOH
1_555
108.1
A
HOH
203
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
204
E
O
HOH
1_555
70.5
A
HOH
201
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
205
E
O
HOH
1_555
86.6
A
HOH
202
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
205
E
O
HOH
1_555
93.2
A
HOH
203
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
205
E
O
HOH
1_555
93.4
A
HOH
204
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
205
E
O
HOH
1_555
86.7
A
HOH
201
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
93.0
A
HOH
202
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
86.6
A
HOH
203
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
86.8
A
HOH
204
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
93.8
A
HOH
205
E
O
HOH
1_555
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
179.5
A
5HC
3
A
5HC
3
DC
B
5HC
3
B
5HC
3
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-4.40
0.70
108.00
103.60
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
-5.70
0.70
108.00
102.30
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
-6.75
0.80
102.40
95.65
A
A
A
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
1
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
8.46
1.20
119.70
128.16
B
B
B
C3'
O3'
P
DT
DT
DC
8
8
9
Y
1
-5.52
0.80
102.40
96.88
B
B
B
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
0.3281
0.2518
0.2548
0.2518
1.99
50.00
2099
334
4775
4315
2456
6.99
96.5
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1DPN
ENGH AND HUBER
1
0.00
515.50
1.99
50.00
29
521
2
490
0
0.007
0.073
0.000
0.0005
0.000
0.006
0.005
0.000
0.075
0.000
1.99
50.0
4HLI
4775
4315
2
4
0.038
0.022
1
21.23
3.55
96.5
0.217
1.99
2.11
5.81
1
3.27
94.6
data collection
RemDAq
phasing
PHASER
refinement
SHELXL-97
data reduction
XDS
data scaling
XDS
DNA dodecamer containing 5-hydroxymethyl-cytosine
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
covale
1.617
both
A
DG
2
A
O3'
DG
2
1_555
A
5HC
3
A
P
5HC
3
1_555
covale
1.606
both
A
5HC
3
A
O3'
5HC
3
1_555
A
DG
4
A
P
DG
4
1_555
covale
1.606
both
B
DG
2
B
O3'
DG
2
1_555
B
5HC
3
B
P
5HC
3
1_555
covale
1.605
both
B
5HC
3
B
O3'
5HC
3
1_555
B
DG
4
B
P
DG
4
1_555
metalc
2.847
A
DT
8
A
O2
DT
8
1_555
A
K
102
D
K
K
1_555
metalc
2.987
A
DC
9
A
O4'
DC
9
1_555
A
K
102
D
K
K
1_555
metalc
2.091
A
MG
101
C
MG
MG
1_555
A
HOH
201
E
O
HOH
1_555
metalc
2.093
A
MG
101
C
MG
MG
1_555
A
HOH
202
E
O
HOH
1_555
metalc
2.088
A
MG
101
C
MG
MG
1_555
A
HOH
203
E
O
HOH
1_555
metalc
2.094
A
MG
101
C
MG
MG
1_555
A
HOH
204
E
O
HOH
1_555
metalc
2.130
A
MG
101
C
MG
MG
1_555
A
HOH
205
E
O
HOH
1_555
metalc
2.135
A
MG
101
C
MG
MG
1_555
A
HOH
206
E
O
HOH
1_555
metalc
3.158
A
K
102
D
K
K
1_555
B
DT
7
B
O4'
DT
7
1_555
metalc
2.641
A
K
102
D
K
K
1_555
B
HOH
102
F
O
HOH
1_555
metalc
2.711
A
K
102
D
K
K
1_555
B
HOH
104
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
7
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
B-DNA dodecamer, epigenetics, 5-hydroxymethyl cytosine, DNA
4HLI
PDB
1
4HLI
1
12
4HLI
1
12
4HLI
A
1
1
12
1
12
4HLI
1
12
4HLI
B
1
1
12
BINDING SITE FOR RESIDUE MG A 101
A
MG
101
Software
6
BINDING SITE FOR RESIDUE K A 102
A
K
102
Software
6
A
HOH
201
E
HOH
6
1_555
A
HOH
202
E
HOH
6
1_555
A
HOH
203
E
HOH
6
1_555
A
HOH
204
E
HOH
6
1_555
A
HOH
205
E
HOH
6
1_555
A
HOH
206
E
HOH
6
1_555
A
DT
8
A
DT
8
6
1_555
A
DC
9
A
DC
9
6
1_555
B
DA
6
B
DA
6
6
1_555
B
DT
7
B
DT
7
6
1_555
B
HOH
102
F
HOH
6
1_555
B
HOH
104
F
HOH
6
1_555
19
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