0.014079
0.000000
0.000253
0.000000
0.025306
0.000000
0.000000
0.000000
0.017354
0.000000
0.000000
0.000000
Chao, X.
Tempel, W.
Bian, C.
Bountra, C.
Arrowsmith, C.H.
Edwards, A.M.
Min, J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
91.030
90.000
71.027
39.517
57.634
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
Y
121
N
N
Y
122
N
C
Y
123
N
N
Y
124
N
C
Y
125
N
C
N
126
N
N
Y
127
N
N
Y
128
N
C
Y
129
N
N
Y
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
C
N
162
N
N
N
163
N
C
N
164
N
C
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
P
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
C
N
185
R
C
N
186
N
O
N
187
S
C
N
188
N
O
N
189
N
C
N
190
R
C
Y
191
N
N
Y
192
N
C
Y
193
N
N
Y
194
N
C
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
C
N
199
N
N
N
200
N
N
Y
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
O
N
217
N
P
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
C
N
222
R
C
N
223
N
O
N
224
S
C
N
225
N
O
N
226
N
C
N
227
R
C
N
228
N
N
N
229
N
C
N
230
N
O
N
231
N
N
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
O
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
N
Y
308
N
C
Y
309
N
C
Y
310
N
N
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
S
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
N
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
S
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
N
442
N
C
N
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
O
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
R
C
N
473
N
O
N
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
N
496
N
O
N
497
N
O
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
N
N
510
S
C
N
511
N
C
N
512
N
O
N
513
N
C
N
514
N
C
N
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
Y
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
sing
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
doub
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
Y
489
N
doub
Y
490
N
sing
Y
491
N
sing
N
492
N
sing
Y
493
N
doub
N
494
N
sing
Y
495
N
doub
N
496
N
sing
Y
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
doub
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
151
1200
1213
10.1016/j.cell.2012.11.014
23217707
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development.
2012
10.2210/pdb4hp1/pdb
pdb_00004hp1
100
1
CCD
2012-01-26
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
08ID-1
CLSI
0.97949
SYNCHROTRON
CLSI BEAMLINE 08ID-1
3678.407
DNA (5'-D(*GP*CP*CP*AP*CP*(5CM)P*GP*GP*TP*GP*GP*C)-3')
2
syn
polymer
8430.049
LOC100036628 protein
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
10
nat
water
no
yes
(DG)(DC)(DC)(DA)(DC)(5CM)(DG)(DG)(DT)(DG)(DG)(DC)
GCCACCGGTGGC
A,B
polydeoxyribonucleotide
no
no
MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Western clawed frog
sample
tet3, LOC100036628
8364
Xenopus (Silurana) tropicalis
511693
Escherichia coli
BL21-V2R-pRARE2
plasmid
pET28-MHL
1
2.56
51.98
VAPOR DIFFUSION, SITTING DROP
7.5
30% PEG-1500, 0.2M sodium chloride, 0.1M HEPES, 5% MPD, pH 7.5, vapor diffusion, sitting drop, temperature 291K
291
-2.922
1
19
A
1
B
12
-1.509
A_DG1:DC12_B
1
-1.993
0.085
-0.140
0.096
-4.703
1
19
A
2
B
11
-2.923
A_DC2:DG11_B
2
-4.976
-0.078
0.480
-0.145
-3.631
1
19
A
3
B
10
-0.019
A_DC3:DG10_B
3
-14.389
0.033
0.385
-0.144
-0.845
1
20
A
4
B
9
1.432
A_DA4:DT9_B
4
-0.108
0.226
-0.072
-0.217
1.465
1
19
A
5
B
8
-5.281
A_DC5:DG8_B
5
-7.826
-0.202
0.246
-0.143
0.147
1
19
A
6
B
7
-1.187
A_5CM6:DG7_B
6
-2.279
0.537
0.101
-0.350
5.792
1
19
A
7
B
6
-3.946
A_DG7:5CM6_B
7
-11.009
-0.168
0.274
-0.219
3.390
1
19
A
8
B
5
3.506
A_DG8:DC5_B
8
-11.023
0.158
0.290
0.081
0.659
1
20
A
9
B
4
-3.065
A_DT9:DA4_B
9
-13.893
0.210
0.147
-0.129
-0.950
1
19
A
10
B
3
-2.010
A_DG10:DC3_B
10
-7.185
-0.627
0.124
-0.412
10.141
1
19
A
11
B
2
-4.082
A_DG11:DC2_B
11
-5.949
0.183
0.455
-0.002
2.967
1
19
A
12
B
1
3.684
A_DC12:DG1_B
12
-1.418
0.759
0.046
0.033
3.427
33.876
A
A
1
2
-3.023
B
B
12
11
3.347
-1.753
-0.698
-0.316
AA_DG1DC2:DG11DC12_BB
1
-5.677
9.790
33.366
-0.249
0.244
3.222
34.661
A
A
2
3
5.313
B
B
11
10
3.242
3.160
-0.239
0.114
AA_DC2DC3:DG10DG11_BB
2
1.863
-3.133
34.473
-0.290
0.685
3.558
37.669
A
A
3
4
3.547
B
B
10
9
3.322
2.282
1.519
1.120
AA_DC3DA4:DT9DG10_BB
3
5.304
-8.245
37.239
1.422
-1.625
3.573
35.015
A
A
4
5
-3.727
B
B
9
8
3.386
-2.233
-1.790
0.501
AA_DA4DC5:DG8DT9_BB
4
-5.270
8.796
34.558
1.192
2.125
3.590
39.402
A
A
5
6
2.628
B
B
8
7
3.450
1.768
1.191
0.749
AA_DC55CM6:DG7DG8_BB
5
4.556
-6.774
39.109
0.885
-1.184
3.339
33.922
A
A
6
7
-0.394
B
B
7
6
3.278
-0.230
-0.919
1.483
AA_5CM6DG7:5CM6DG7_BB
6
-3.213
5.514
33.773
2.579
1.053
3.362
34.681
A
A
7
8
7.804
B
B
6
5
3.431
4.638
0.234
-0.249
AA_DG7DG8:DC55CM6_BB
7
-0.935
1.573
34.366
-1.160
-0.543
3.230
31.885
A
A
8
9
10.164
B
B
5
4
3.372
5.552
-0.171
-0.442
AA_DG8DT9:DA4DC5_BB
8
2.129
-3.898
31.340
-1.833
0.706
2.953
44.565
A
A
9
10
-9.198
B
B
4
3
3.309
-6.949
-0.189
2.126
AA_DT9DG10:DC3DA4_BB
9
0.984
-1.302
44.037
3.419
0.336
3.191
34.163
A
A
10
11
2.462
B
B
3
2
3.173
1.444
-0.198
0.442
AA_DG10DG11:DC2DC3_BB
10
-3.691
6.297
33.939
0.530
-0.233
3.562
39.377
A
A
11
12
-3.555
B
B
2
1
3.470
-2.391
1.072
-0.308
AA_DG11DC12:DG1DC2_BB
11
3.552
-5.281
39.152
-0.153
-1.137
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-12-05
1
1
2012-12-19
1
2
2024-02-28
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-10-23
REL
REL
ZN
ZINC ION
HOH
water
unpublished model of complex between same protein and DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in ""density"" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models.
Other
experimental model
ZN
1
3
ZN
ZN
201
C
ZN
2
3
ZN
ZN
202
C
HOH
5
4
HOH
HOH
101
A
HOH
10
4
HOH
HOH
102
A
HOH
2
4
HOH
HOH
101
B
HOH
1
4
HOH
HOH
301
C
HOH
3
4
HOH
HOH
302
C
HOH
4
4
HOH
HOH
303
C
HOH
6
4
HOH
HOH
304
C
HOH
7
4
HOH
HOH
305
C
HOH
8
4
HOH
HOH
306
C
HOH
9
4
HOH
HOH
307
C
DG
1
n
1
DG
1
A
DC
2
n
2
DC
2
A
DC
3
n
3
DC
3
A
DA
4
n
4
DA
4
A
DC
5
n
5
DC
5
A
5CM
6
n
6
5CM
6
A
DG
7
n
7
DG
7
A
DG
8
n
8
DG
8
A
DT
9
n
9
DT
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DC
12
n
12
DC
12
A
DG
1
n
1
DG
1
B
DC
2
n
2
DC
2
B
DC
3
n
3
DC
3
B
DA
4
n
4
DA
4
B
DC
5
n
5
DC
5
B
5CM
6
n
6
5CM
6
B
DG
7
n
7
DG
7
B
DG
8
n
8
DG
8
B
DT
9
n
9
DT
9
B
DG
10
n
10
DG
10
B
DG
11
n
11
DG
11
B
DC
12
n
12
DC
12
B
n
1
40
C
n
2
41
C
n
3
42
C
n
4
43
C
n
5
44
C
n
6
45
C
n
7
46
C
n
8
47
C
n
9
48
C
n
10
49
C
n
11
50
C
n
12
51
C
n
13
52
C
n
14
53
C
n
15
54
C
n
16
55
C
n
17
56
C
n
18
57
C
n
19
58
C
ASN
59
n
20
ASN
59
C
LYS
60
n
21
LYS
60
C
LYS
61
n
22
LYS
61
C
ARG
62
n
23
ARG
62
C
LYS
63
n
24
LYS
63
C
ARG
64
n
25
ARG
64
C
CYS
65
n
26
CYS
65
C
GLY
66
n
27
GLY
66
C
VAL
67
n
28
VAL
67
C
CYS
68
n
29
CYS
68
C
VAL
69
n
30
VAL
69
C
PRO
70
n
31
PRO
70
C
CYS
71
n
32
CYS
71
C
LEU
72
n
33
LEU
72
C
ARG
73
n
34
ARG
73
C
LYS
74
n
35
LYS
74
C
GLU
75
n
36
GLU
75
C
PRO
76
n
37
PRO
76
C
CYS
77
n
38
CYS
77
C
GLY
78
n
39
GLY
78
C
ALA
79
n
40
ALA
79
C
CYS
80
n
41
CYS
80
C
TYR
81
n
42
TYR
81
C
ASN
82
n
43
ASN
82
C
CYS
83
n
44
CYS
83
C
VAL
84
n
45
VAL
84
C
ASN
85
n
46
ASN
85
C
ARG
86
n
47
ARG
86
C
SER
87
n
48
SER
87
C
THR
88
n
49
THR
88
C
SER
89
n
50
SER
89
C
HIS
90
n
51
HIS
90
C
GLN
91
n
52
GLN
91
C
ILE
92
n
53
ILE
92
C
CYS
93
n
54
CYS
93
C
LYS
94
n
55
LYS
94
C
MET
95
n
56
MET
95
C
ARG
96
n
57
ARG
96
C
LYS
97
n
58
LYS
97
C
CYS
98
n
59
CYS
98
C
GLU
99
n
60
GLU
99
C
GLN
100
n
61
GLN
100
C
LEU
101
n
62
LEU
101
C
LYS
102
n
63
LYS
102
C
LYS
103
n
64
LYS
103
C
LYS
104
n
65
LYS
104
C
ARG
105
n
66
ARG
105
C
VAL
106
n
67
VAL
106
C
VAL
107
n
68
VAL
107
C
PRO
108
n
69
PRO
108
C
MET
109
n
70
MET
109
C
n
71
110
C
n
72
111
C
9.2194
4.6015
-0.7036
10.0492
-1.7156
5.9178
-0.4552
1.3601
0.0956
-0.5914
0.2957
-0.4826
-0.1728
0.4087
0.1595
0.4839
-0.2503
-0.0562
0.5631
-0.0483
0.3110
refined
21.2959
0.3332
9.2652
X-RAY DIFFRACTION
15.9835
7.2740
0.6816
8.4588
-0.0316
4.3401
-0.0407
-0.0128
0.1235
-0.0092
-0.0616
-0.4126
-0.3767
0.4751
0.1023
0.4996
-0.2011
0.0040
0.5766
-0.0722
0.3125
refined
22.0503
-1.0194
9.7846
X-RAY DIFFRACTION
4.5889
-0.4331
1.7374
7.6649
-0.3340
9.7911
-0.2312
0.5210
-0.1007
-0.0583
0.1989
-0.2583
0.0994
0.2059
0.0324
0.5320
-0.1071
-0.0218
0.1555
-0.0365
0.2993
refined
17.0095
-2.4406
21.3559
X-RAY DIFFRACTION
A
1
A
12
X-RAY DIFFRACTION
1
B
1
B
12
X-RAY DIFFRACTION
2
C
59
C
109
X-RAY DIFFRACTION
3
software_defined_assembly
PISA
3
trimeric
4080
-11
7020
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
68
C
SG
CYS
29
1_555
109.9
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
71
C
SG
CYS
32
1_555
116.1
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
71
C
SG
CYS
32
1_555
98.9
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
108.8
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
122.6
C
CYS
71
C
SG
CYS
32
1_555
C
ZN
201
D
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
100.4
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
80
C
SG
CYS
41
1_555
111.5
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
83
C
SG
CYS
44
1_555
114.4
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
83
C
SG
CYS
44
1_555
104.2
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
107.0
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
117.2
C
CYS
83
C
SG
CYS
44
1_555
C
ZN
202
E
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
102.4
A
5CM
6
A
5CM
6
DC
B
5CM
6
B
5CM
6
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O5'
DG
1
A
O5'
DG
1
1
Y
1
C
CG
LYS
60
C
CG
LYS
21
1
Y
1
C
CD
LYS
60
C
CD
LYS
21
1
Y
1
C
CE
LYS
60
C
CE
LYS
21
1
Y
1
C
NZ
LYS
60
C
NZ
LYS
21
1
Y
1
C
NZ
LYS
63
C
NZ
LYS
24
1
Y
1
C
CD
LYS
74
C
CD
LYS
35
1
Y
1
C
CE
LYS
74
C
CE
LYS
35
1
Y
1
C
NZ
LYS
74
C
NZ
LYS
35
1
Y
1
C
CG
ARG
86
C
CG
ARG
47
1
Y
1
C
CD
ARG
86
C
CD
ARG
47
1
Y
1
C
NE
ARG
86
C
NE
ARG
47
1
Y
1
C
CZ
ARG
86
C
CZ
ARG
47
1
Y
1
C
NH1
ARG
86
C
NH1
ARG
47
1
Y
1
C
NH2
ARG
86
C
NH2
ARG
47
1
Y
1
C
NZ
LYS
94
C
NZ
LYS
55
1
Y
1
C
CD
LYS
104
C
CD
LYS
65
1
Y
1
C
CE
LYS
104
C
CE
LYS
65
1
Y
1
C
NZ
LYS
104
C
NZ
LYS
65
1
Y
1
C
CG1
VAL
106
C
CG1
VAL
67
1
Y
1
C
CG2
VAL
106
C
CG2
VAL
67
1
Y
1
C
CG1
VAL
107
C
CG1
VAL
68
1
Y
1
C
CG2
VAL
107
C
CG2
VAL
68
1
Y
1
C
MET
40
C
MET
1
1
Y
1
C
HIS
41
C
HIS
2
1
Y
1
C
HIS
42
C
HIS
3
1
Y
1
C
HIS
43
C
HIS
4
1
Y
1
C
HIS
44
C
HIS
5
1
Y
1
C
HIS
45
C
HIS
6
1
Y
1
C
HIS
46
C
HIS
7
1
Y
1
C
SER
47
C
SER
8
1
Y
1
C
SER
48
C
SER
9
1
Y
1
C
GLY
49
C
GLY
10
1
Y
1
C
ARG
50
C
ARG
11
1
Y
1
C
GLU
51
C
GLU
12
1
Y
1
C
ASN
52
C
ASN
13
1
Y
1
C
LEU
53
C
LEU
14
1
Y
1
C
TYR
54
C
TYR
15
1
Y
1
C
PHE
55
C
PHE
16
1
Y
1
C
GLN
56
C
GLN
17
1
Y
1
C
GLY
57
C
GLY
18
1
Y
1
C
SER
58
C
SER
19
1
Y
1
C
LYS
110
C
LYS
71
1
Y
1
C
GLY
111
C
GLY
72
1
Y
128.140
70.5470
41.420
-2.0920
0.0000
-1.3750
-3.4060
0.0000
5.4480
0.9640
0.9540
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. COOT and the MOLPROBITY server were also used during refinement.
0.2502
0.2196
0.2210
2.2500
35.0000
351
7736
4.5370
99.7810
0.2760
0.2410
1.000
0.500
14.1950
0.1890
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2410
0.1980
0.8000
0.8000
1.2000
unpublished model of complex between same protein and DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in "density" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models.
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.2500
35.0000
10
882
2
487
383
0.012
0.015
944
0.003
0.020
657
1.377
1.673
1367
1.155
3.011
1518
5.478
5.000
50
33.295
22.000
15
15.397
15.000
80
17.228
15.000
5
0.061
0.200
128
0.008
0.020
730
0.001
0.020
217
0.466
0.467
2.308
26
539
565
20
100.000
0.575
0.442
2.371
23
515
538
20
100.000
0.528
0.380
2.440
24
512
537
20
99.814
0.405
0.364
2.514
23
498
522
20
99.808
0.459
0.339
2.596
19
488
507
20
100.000
0.371
0.324
2.687
28
458
486
20
100.000
0.327
0.315
2.788
18
455
473
20
100.000
0.359
0.292
2.901
23
445
469
20
99.787
0.347
0.262
3.029
23
404
427
20
100.000
0.258
0.257
3.175
21
395
417
20
99.760
0.217
0.198
3.346
12
393
406
20
99.754
0.252
0.198
3.547
15
350
367
20
99.455
0.173
0.214
3.789
10
346
357
20
99.720
0.249
0.183
4.088
20
321
341
20
100.000
0.211
0.157
4.472
17
293
310
20
100.000
0.176
0.167
4.990
12
273
285
20
100.000
0.167
0.172
5.743
11
237
249
20
99.598
0.221
0.192
6.986
10
202
212
20
100.000
0.279
0.172
9.689
10
160
171
20
99.415
0.161
0.178
35.000
6
100
106
20
100.000
2.25
35.51
4HP1
7738
0.046
1
14.6771
4.12
99.90
0.49
2.25
2.37
4628
1110
1
4.17
100.00
0.23
2.37
2.52
4434
1058
1
4.19
99.90
0.16
2.52
2.69
4147
994
1
4.17
100.00
0.09
2.69
2.90
3971
947
1
4.19
99.89
0.06
2.90
3.18
3509
840
1
4.18
99.94
0.03
3.18
3.56
3233
781
1
4.14
99.80
0.04
3.56
4.11
2848
700
1
4.07
99.93
0.04
4.11
5.03
2318
586
1
3.96
100.00
0.04
5.03
7.12
1806
462
1
3.91
99.77
0.04
7.12
35.51
956
260
1
3.68
99.24
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
CCP4_3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0027
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
Crystal structure of Tet3 in complex with a non-CpG dsDNA
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.
C
CYS
68
C
CYS
29
HELX_P
C
ARG
73
C
ARG
34
1
1
6
C
CYS
80
C
CYS
41
HELX_P
C
ASN
85
C
ASN
46
1
2
6
covale
1.611
both
A
DC
5
A
O3'
DC
5
1_555
A
5CM
6
A
P
5CM
6
1_555
covale
1.612
both
A
5CM
6
A
O3'
5CM
6
1_555
A
DG
7
A
P
DG
7
1_555
covale
1.590
both
B
DC
5
B
O3'
DC
5
1_555
B
5CM
6
B
P
5CM
6
1_555
covale
1.577
both
B
5CM
6
B
O3'
5CM
6
1_555
B
DG
7
B
P
DG
7
1_555
metalc
2.331
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
D
ZN
ZN
1_555
metalc
2.339
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
D
ZN
ZN
1_555
metalc
2.303
C
CYS
71
C
SG
CYS
32
1_555
C
ZN
201
D
ZN
ZN
1_555
metalc
2.329
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
E
ZN
ZN
1_555
metalc
2.324
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
E
ZN
ZN
1_555
metalc
2.357
C
CYS
83
C
SG
CYS
44
1_555
C
ZN
202
E
ZN
ZN
1_555
metalc
2.357
C
CYS
93
C
SG
CYS
54
1_555
C
ZN
202
E
ZN
ZN
1_555
metalc
2.285
C
CYS
98
C
SG
CYS
59
1_555
C
ZN
201
D
ZN
ZN
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
5CM
6
A
N3
5CM
6
1_555
B
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
5CM
6
A
N4
5CM
6
1_555
B
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
5CM
6
A
O2
5CM
6
1_555
B
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
5CM
6
B
N3
5CM
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
5CM
6
B
O2
5CM
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
5CM
6
B
N4
5CM
6
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
5
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
5
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
5
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
4
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
4
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N3
DC
12
1_555
B
DG
1
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N4
DC
12
1_555
B
DG
1
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
O2
DC
12
1_555
B
DG
1
B
N2
DG
1
1_555
DNA BINDING PROTEIN/DNA
CXXC, DNA methylation, Structural Genomics, Structural Genomics Consortium, SGC, DNA BINDING PROTEIN-DNA complex
A0JP82_XENTR
UNP
2
58
A0JP82
SNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
4HP1
PDB
1
4HP1
58
111
4HP1
58
111
A0JP82
C
1
19
72
1
12
4HP1
1
12
4HP1
A
2
1
12
1
12
4HP1
1
12
4HP1
B
2
1
12
1
expression tag
MET
40
4HP1
C
A0JP82
UNP
1
1
expression tag
HIS
41
4HP1
C
A0JP82
UNP
2
1
expression tag
HIS
42
4HP1
C
A0JP82
UNP
3
1
expression tag
HIS
43
4HP1
C
A0JP82
UNP
4
1
expression tag
HIS
44
4HP1
C
A0JP82
UNP
5
1
expression tag
HIS
45
4HP1
C
A0JP82
UNP
6
1
expression tag
HIS
46
4HP1
C
A0JP82
UNP
7
1
expression tag
SER
47
4HP1
C
A0JP82
UNP
8
1
expression tag
SER
48
4HP1
C
A0JP82
UNP
9
1
expression tag
GLY
49
4HP1
C
A0JP82
UNP
10
1
expression tag
ARG
50
4HP1
C
A0JP82
UNP
11
1
expression tag
GLU
51
4HP1
C
A0JP82
UNP
12
1
expression tag
ASN
52
4HP1
C
A0JP82
UNP
13
1
expression tag
LEU
53
4HP1
C
A0JP82
UNP
14
1
expression tag
TYR
54
4HP1
C
A0JP82
UNP
15
1
expression tag
PHE
55
4HP1
C
A0JP82
UNP
16
1
expression tag
GLN
56
4HP1
C
A0JP82
UNP
17
1
expression tag
GLY
57
4HP1
C
A0JP82
UNP
18
BINDING SITE FOR RESIDUE ZN C 201
C
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN C 202
C
ZN
202
Software
4
C
CYS
65
C
CYS
26
4
1_555
C
CYS
68
C
CYS
29
4
1_555
C
CYS
71
C
CYS
32
4
1_555
C
CYS
98
C
CYS
59
4
1_555
C
CYS
77
C
CYS
38
4
1_555
C
CYS
80
C
CYS
41
4
1_555
C
CYS
83
C
CYS
44
4
1_555
C
CYS
93
C
CYS
54
4
1_555
5
C 1 2 1