0.014308
0.000000
0.002502
0.000000
0.025345
0.000000
0.000000
0.000000
0.018753
0.000000
0.000000
0.000000
Chao, X.
Tempel, W.
Bian, C.
Bountra, C.
Arrowsmith, C.H.
Edwards, A.M.
Min, J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
99.920
90.000
69.892
39.455
54.134
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
R
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
S
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
Y
88
N
C
N
89
N
N
Y
90
N
N
Y
91
N
C
Y
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
N
N
126
N
C
N
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
O
N
143
N
P
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
C
N
148
R
C
N
149
N
O
N
150
S
C
N
151
N
O
N
152
N
C
N
153
R
C
Y
154
N
N
Y
155
N
C
Y
156
N
N
Y
157
N
C
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
C
N
162
N
N
N
163
N
N
Y
164
N
C
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
P
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
C
N
185
R
C
N
186
N
O
N
187
S
C
N
188
N
O
N
189
N
C
N
190
R
C
N
191
N
N
N
192
N
C
N
193
N
O
N
194
N
N
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
O
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
N
Y
271
N
C
Y
272
N
C
Y
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
S
C
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
N
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
S
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
O
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
R
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
N
459
N
O
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
N
477
N
C
N
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
Y
91
N
sing
Y
92
N
sing
Y
93
N
doub
N
94
N
sing
Y
95
N
sing
Y
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
doub
N
100
N
sing
N
101
N
sing
Y
102
N
sing
Y
103
N
doub
N
104
N
sing
Y
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
doub
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
Y
274
N
sing
Y
275
N
doub
Y
276
N
doub
N
277
N
sing
Y
278
N
sing
N
279
N
sing
Y
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
151
1200
1213
10.1016/j.cell.2012.11.014
23217707
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development.
2012
10.2210/pdb4hp3/pdb
pdb_00004hp3
100
1
CCD
2012-01-25
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
08ID-1
CLSI
0.97949
SYNCHROTRON
CLSI BEAMLINE 08ID-1
3663.392
DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3')
2
syn
polymer
8430.049
LOC100036628 protein
1
man
polymer
UNKNOWN ATOM OR ION
3
syn
non-polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
23
nat
water
no
no
(DG)(DC)(DC)(DA)(DA)(DC)(DG)(DT)(DT)(DG)(DG)(DC)
GCCAACGTTGGC
A,B
polydeoxyribonucleotide
no
no
MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
MHHHHHHSSGRENLYFQGSNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
WESTERN CLAWED FROG
sample
8364
XENOPUS (SILURANA) TROPICALIS
511693
Escherichia coli
BL21-V2R-pRARE2
plasmid
pET28-MHL
1
2.33
47.28
VAPOR DIFFUSION, SITTING DROP
7.5
30% PEG-1500, 0.2M sodium chloride, 0.1M HEPES, pH 7.5, vapor diffusion, sitting drop, temperature 291K
291
-2.267
1
19
A
1
B
12
1.401
A_DG1:DC12_B
1
-2.526
-0.376
-0.116
-0.105
-10.705
1
19
A
2
B
11
-2.341
A_DC2:DG11_B
2
-8.203
-0.028
0.478
-0.095
-5.009
1
19
A
3
B
10
0.628
A_DC3:DG10_B
3
-10.236
0.421
0.241
-0.050
-7.322
1
20
A
4
B
9
0.376
A_DA4:DT9_B
4
-1.787
0.155
-0.107
-0.134
3.637
1
20
A
5
B
8
4.712
A_DA5:DT8_B
5
-2.250
-0.079
0.092
-0.178
-2.055
1
19
A
6
B
7
-6.026
A_DC6:DG7_B
6
-10.065
0.003
-0.032
-0.216
-3.898
1
19
A
7
B
6
0.090
A_DG7:DC6_B
7
-6.176
-0.262
0.132
-0.206
1.366
1
20
A
8
B
5
-0.882
A_DT8:DA5_B
8
-5.639
0.090
-0.036
-0.106
3.361
1
20
A
9
B
4
0.991
A_DT9:DA4_B
9
-8.779
0.062
-0.238
-0.061
1.652
1
19
A
10
B
3
0.983
A_DG10:DC3_B
10
-3.210
-0.234
-0.115
-0.122
3.841
1
19
A
11
B
2
-2.603
A_DG11:DC2_B
11
-6.479
-0.147
0.054
-0.215
-3.175
1
19
A
12
B
1
1.342
A_DC12:DG1_B
12
-4.018
0.403
-0.015
-0.139
3.589
36.883
A
A
1
2
-5.128
B
B
12
11
3.452
-3.228
-1.009
-0.432
AA_DG1DC2:DG11DC12_BB
1
-5.750
9.135
36.308
-0.208
0.750
3.136
33.824
A
A
2
3
8.144
B
B
11
10
3.156
4.718
-0.002
0.152
AA_DC2DC3:DG10DG11_BB
2
2.993
-5.167
33.372
-0.476
0.471
3.389
43.555
A
A
3
4
0.690
B
B
10
9
3.366
0.512
0.241
1.582
AA_DC3DA4:DT9DG10_BB
3
1.332
-1.795
43.533
2.081
-0.192
2.870
25.736
A
A
4
5
17.639
B
B
9
8
3.168
7.714
0.754
-0.074
AA_DA4DA5:DT8DT9_BB
4
-3.587
8.203
24.312
-2.222
-2.648
3.455
40.601
A
A
5
6
-7.233
B
B
8
7
3.412
-5.006
-1.759
-0.154
AA_DA5DC6:DG7DT8_BB
5
-1.201
1.735
40.287
0.365
2.395
3.356
35.973
A
A
6
7
6.776
B
B
7
6
3.384
4.173
0.044
0.036
AA_DC6DG7:DC6DG7_BB
6
-2.551
4.142
35.649
-0.557
-0.447
3.247
32.276
A
A
7
8
0.585
B
B
6
5
3.246
0.325
0.148
-0.053
AA_DG7DT8:DA5DC6_BB
7
0.356
-0.641
32.273
-0.153
-0.203
3.294
36.509
A
A
8
9
2.628
B
B
5
4
3.262
1.642
0.471
0.065
AA_DT8DT9:DA4DA5_BB
8
4.548
-7.279
36.198
-0.125
-0.119
3.536
33.822
A
A
9
10
5.496
B
B
4
3
3.416
3.191
0.926
0.975
AA_DT9DG10:DC3DA4_BB
9
1.879
-3.235
33.625
1.127
-1.268
3.312
36.336
A
A
10
11
8.885
B
B
3
2
3.227
5.514
-0.883
0.388
AA_DG10DG11:DC2DC3_BB
10
-3.206
5.166
35.791
-0.152
0.966
3.508
37.266
A
A
11
12
-0.939
B
B
2
1
3.482
-0.600
0.713
-0.467
AA_DG11DC12:DG1DC2_BB
11
1.109
-1.736
37.246
-0.645
-0.959
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-12-05
1
1
2012-12-19
1
2
2024-02-28
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-23
REL
REL
UNX
UNKNOWN ATOM OR ION
ZN
ZINC ION
HOH
water
unpublished model of complex between same protein construct and a methylated DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in ""density"" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models.
Other
experimental model
UNX
2
3
UNX
UNX
101
A
UNX
3
3
UNX
UNX
102
A
ZN
1
4
ZN
ZN
201
C
ZN
2
4
ZN
ZN
202
C
UNX
1
3
UNX
UNX
203
C
HOH
5
5
HOH
HOH
201
A
HOH
6
5
HOH
HOH
202
A
HOH
10
5
HOH
HOH
203
A
HOH
11
5
HOH
HOH
204
A
HOH
16
5
HOH
HOH
205
A
HOH
17
5
HOH
HOH
101
B
HOH
21
5
HOH
HOH
102
B
HOH
1
5
HOH
HOH
301
C
HOH
2
5
HOH
HOH
302
C
HOH
3
5
HOH
HOH
303
C
HOH
4
5
HOH
HOH
304
C
HOH
7
5
HOH
HOH
305
C
HOH
8
5
HOH
HOH
306
C
HOH
9
5
HOH
HOH
307
C
HOH
12
5
HOH
HOH
308
C
HOH
13
5
HOH
HOH
309
C
HOH
14
5
HOH
HOH
310
C
HOH
15
5
HOH
HOH
311
C
HOH
19
5
HOH
HOH
312
C
HOH
20
5
HOH
HOH
313
C
HOH
22
5
HOH
HOH
314
C
HOH
23
5
HOH
HOH
315
C
HOH
24
5
HOH
HOH
316
C
DG
1
n
1
DG
1
A
DC
2
n
2
DC
2
A
DC
3
n
3
DC
3
A
DA
4
n
4
DA
4
A
DA
5
n
5
DA
5
A
DC
6
n
6
DC
6
A
DG
7
n
7
DG
7
A
DT
8
n
8
DT
8
A
DT
9
n
9
DT
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DC
12
n
12
DC
12
A
DG
1
n
1
DG
1
B
DC
2
n
2
DC
2
B
DC
3
n
3
DC
3
B
DA
4
n
4
DA
4
B
DA
5
n
5
DA
5
B
DC
6
n
6
DC
6
B
DG
7
n
7
DG
7
B
DT
8
n
8
DT
8
B
DT
9
n
9
DT
9
B
DG
10
n
10
DG
10
B
DG
11
n
11
DG
11
B
DC
12
n
12
DC
12
B
n
1
40
C
n
2
41
C
n
3
42
C
n
4
43
C
n
5
44
C
n
6
45
C
n
7
46
C
n
8
47
C
n
9
48
C
n
10
49
C
n
11
50
C
n
12
51
C
n
13
52
C
n
14
53
C
n
15
54
C
n
16
55
C
n
17
56
C
n
18
57
C
n
19
58
C
ASN
59
n
20
ASN
59
C
LYS
60
n
21
LYS
60
C
LYS
61
n
22
LYS
61
C
ARG
62
n
23
ARG
62
C
LYS
63
n
24
LYS
63
C
ARG
64
n
25
ARG
64
C
CYS
65
n
26
CYS
65
C
GLY
66
n
27
GLY
66
C
VAL
67
n
28
VAL
67
C
CYS
68
n
29
CYS
68
C
VAL
69
n
30
VAL
69
C
PRO
70
n
31
PRO
70
C
CYS
71
n
32
CYS
71
C
LEU
72
n
33
LEU
72
C
ARG
73
n
34
ARG
73
C
LYS
74
n
35
LYS
74
C
GLU
75
n
36
GLU
75
C
PRO
76
n
37
PRO
76
C
CYS
77
n
38
CYS
77
C
GLY
78
n
39
GLY
78
C
ALA
79
n
40
ALA
79
C
CYS
80
n
41
CYS
80
C
TYR
81
n
42
TYR
81
C
ASN
82
n
43
ASN
82
C
CYS
83
n
44
CYS
83
C
VAL
84
n
45
VAL
84
C
ASN
85
n
46
ASN
85
C
ARG
86
n
47
ARG
86
C
SER
87
n
48
SER
87
C
THR
88
n
49
THR
88
C
SER
89
n
50
SER
89
C
HIS
90
n
51
HIS
90
C
GLN
91
n
52
GLN
91
C
ILE
92
n
53
ILE
92
C
CYS
93
n
54
CYS
93
C
LYS
94
n
55
LYS
94
C
MET
95
n
56
MET
95
C
ARG
96
n
57
ARG
96
C
LYS
97
n
58
LYS
97
C
CYS
98
n
59
CYS
98
C
GLU
99
n
60
GLU
99
C
GLN
100
n
61
GLN
100
C
LEU
101
n
62
LEU
101
C
LYS
102
n
63
LYS
102
C
LYS
103
n
64
LYS
103
C
LYS
104
n
65
LYS
104
C
ARG
105
n
66
ARG
105
C
VAL
106
n
67
VAL
106
C
VAL
107
n
68
VAL
107
C
PRO
108
n
69
PRO
108
C
MET
109
n
70
MET
109
C
n
71
110
C
n
72
111
C
4.0949
5.2510
-0.6890
9.4711
0.4565
4.6317
-0.6484
0.9541
-0.2178
-0.5534
0.5198
0.1219
-0.0817
0.0359
0.1286
0.2734
-0.2114
0.0867
0.5299
-0.1094
0.1427
refined
-18.4712
-18.9190
8.1644
X-RAY DIFFRACTION
9.5126
6.4532
0.5532
7.8003
0.9141
5.0148
-0.1653
0.3001
0.0626
-0.4054
0.1393
0.2939
0.1253
-0.2641
0.0260
0.2464
-0.0713
-0.0169
0.3459
0.0136
0.1683
refined
-18.7733
-18.0552
9.3508
X-RAY DIFFRACTION
3.8636
0.4324
-2.1731
10.3005
0.3064
5.4021
-0.0772
0.3738
0.0030
-0.5485
0.1085
-0.0284
-0.1633
-0.1043
-0.0313
0.2750
-0.0699
0.0221
0.1512
-0.0065
0.0413
refined
-19.7853
-17.3567
19.5889
X-RAY DIFFRACTION
A
1
A
12
X-RAY DIFFRACTION
1
B
1
B
12
X-RAY DIFFRACTION
2
C
59
C
109
X-RAY DIFFRACTION
3
software_defined_assembly
PISA
3
trimeric
2940
-18
7060
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
68
C
SG
CYS
29
1_555
108.8
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
71
C
SG
CYS
32
1_555
116.4
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
71
C
SG
CYS
32
1_555
101.2
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
105.9
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
124.5
C
CYS
71
C
SG
CYS
32
1_555
C
ZN
201
F
ZN
ZN
1_555
C
CYS
98
C
SG
CYS
59
1_555
100.5
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
80
C
SG
CYS
41
1_555
112.1
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
83
C
SG
CYS
44
1_555
119.2
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
83
C
SG
CYS
44
1_555
102.7
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
102.4
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
116.2
C
CYS
83
C
SG
CYS
44
1_555
C
ZN
202
G
ZN
ZN
1_555
C
CYS
93
C
SG
CYS
54
1_555
104.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
C
CG
LYS
60
C
CG
LYS
21
1
Y
1
C
CD
LYS
60
C
CD
LYS
21
1
Y
1
C
CE
LYS
60
C
CE
LYS
21
1
Y
1
C
NZ
LYS
60
C
NZ
LYS
21
1
Y
1
C
CG
LYS
74
C
CG
LYS
35
1
Y
1
C
CD
LYS
74
C
CD
LYS
35
1
Y
1
C
CE
LYS
74
C
CE
LYS
35
1
Y
1
C
NZ
LYS
74
C
NZ
LYS
35
1
Y
1
C
CD
GLU
75
C
CD
GLU
36
1
Y
1
C
OE1
GLU
75
C
OE1
GLU
36
1
Y
1
C
OE2
GLU
75
C
OE2
GLU
36
1
Y
1
C
OG1
THR
88
C
OG1
THR
49
1
Y
1
C
CG2
THR
88
C
CG2
THR
49
1
Y
1
C
CG
LYS
104
C
CG
LYS
65
1
Y
1
C
CD
LYS
104
C
CD
LYS
65
1
Y
1
C
CE
LYS
104
C
CE
LYS
65
1
Y
1
C
NZ
LYS
104
C
NZ
LYS
65
1
Y
1
C
CG1
VAL
106
C
CG1
VAL
67
1
Y
1
C
CG2
VAL
106
C
CG2
VAL
67
1
Y
1
C
CG1
VAL
107
C
CG1
VAL
68
1
Y
1
C
CG2
VAL
107
C
CG2
VAL
68
1
Y
1
C
MET
40
C
MET
1
1
Y
1
C
HIS
41
C
HIS
2
1
Y
1
C
HIS
42
C
HIS
3
1
Y
1
C
HIS
43
C
HIS
4
1
Y
1
C
HIS
44
C
HIS
5
1
Y
1
C
HIS
45
C
HIS
6
1
Y
1
C
HIS
46
C
HIS
7
1
Y
1
C
SER
47
C
SER
8
1
Y
1
C
SER
48
C
SER
9
1
Y
1
C
GLY
49
C
GLY
10
1
Y
1
C
ARG
50
C
ARG
11
1
Y
1
C
GLU
51
C
GLU
12
1
Y
1
C
ASN
52
C
ASN
13
1
Y
1
C
LEU
53
C
LEU
14
1
Y
1
C
TYR
54
C
TYR
15
1
Y
1
C
PHE
55
C
PHE
16
1
Y
1
C
GLN
56
C
GLN
17
1
Y
1
C
GLY
57
C
GLY
18
1
Y
1
C
SER
58
C
SER
19
1
Y
1
C
LYS
110
C
LYS
71
1
Y
1
C
GLY
111
C
GLY
72
1
Y
1
8.29
1.20
119.70
127.99
A
A
A
C3'
O3'
P
DA
DA
DC
5
5
6
Y
1
C
LYS
60
-109.25
-168.48
1
C
ASN
85
-111.16
51.47
122.830
52.7690
27.080
-1.0000
0.0000
0.3950
-0.7390
0.0000
1.8750
0.9600
0.9480
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. COOT and the MOLPROBITY server were also used during refinement.
0.2434
0.2155
0.2170
2.0500
30.0000
452
9281
4.8700
99.6780
0.2560
0.2200
1.000
0.500
8.2140
0.1390
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1860
0.1620
0.8000
0.8000
1.2000
unpublished model of complex between same protein construct and a methylated DNA fragment. That structure was solved by a combination of zinc-SAD (SHELXD/E) and molecular replacement in "density" mode (MOLREP), using ideal DNA (COOT) and human MLL2 (currently unpublished) as search models.
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.0500
30.0000
23
898
5
486
384
0.013
0.014
940
0.003
0.020
662
1.359
1.602
1359
1.160
3.010
1530
6.013
5.000
50
40.342
20.000
14
14.940
15.000
79
20.480
15.000
6
0.064
0.200
127
0.008
0.021
719
0.001
0.020
213
0.415
0.321
2.103
32
651
685
20
99.708
0.345
0.278
2.160
30
631
661
20
100.000
0.288
0.268
2.223
35
628
663
20
100.000
0.297
0.267
2.291
27
568
596
20
99.832
0.187
0.243
2.365
24
601
626
20
99.840
0.292
0.232
2.448
32
542
576
20
99.653
0.312
0.238
2.540
25
531
558
20
99.642
0.365
0.257
2.642
28
527
555
20
100.000
0.264
0.288
2.759
19
490
512
20
99.414
0.278
0.287
2.892
22
499
521
20
100.000
0.312
0.240
3.047
33
436
469
20
100.000
0.289
0.250
3.230
28
424
453
20
99.779
0.244
0.178
3.450
25
399
426
20
99.531
0.178
0.200
3.723
14
382
397
20
99.748
0.201
0.189
4.072
24
353
379
20
99.472
0.135
0.166
4.542
17
317
335
20
99.701
0.225
0.191
5.224
14
282
297
20
99.663
0.223
0.183
6.351
8
249
257
20
100.000
0.192
0.188
8.786
7
196
205
20
99.024
0.266
0.193
30.000
8
120
130
20
98.462
2.05
34.42
4HP3
9281
0.053
1
12.5727
3.71
99.79
0.67
2.05
2.16
4996
1345
1
3.71
99.85
0.39
2.16
2.29
4711
1267
1
3.72
99.92
0.24
2.29
2.45
4523
1206
1
3.75
99.79
0.14
2.45
2.65
4169
1111
1
3.75
99.81
0.10
2.65
2.90
3840
1029
1
3.73
99.75
0.06
2.90
3.24
3456
926
1
3.73
99.89
0.04
3.24
3.74
3078
825
1
3.73
99.68
0.04
3.74
4.58
2619
708
1
3.70
99.70
0.04
4.58
6.48
1976
550
1
3.59
99.90
0.04
6.48
34.42
1052
314
1
3.35
99.03
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
CCP4_3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0027
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
Crystal structure of Tet3 in complex with a CpG dsDNA
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
3
N
N
5
N
N
5
N
N
5
N
N
AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.
C
CYS
68
C
CYS
29
HELX_P
C
ARG
73
C
ARG
34
1
1
6
C
CYS
80
C
CYS
41
HELX_P
C
ASN
85
C
ASN
46
1
2
6
C
ASN
85
C
ASN
46
HELX_P
C
HIS
90
C
HIS
51
1
3
6
metalc
2.336
C
CYS
65
C
SG
CYS
26
1_555
C
ZN
201
F
ZN
ZN
1_555
metalc
2.309
C
CYS
68
C
SG
CYS
29
1_555
C
ZN
201
F
ZN
ZN
1_555
metalc
2.284
C
CYS
71
C
SG
CYS
32
1_555
C
ZN
201
F
ZN
ZN
1_555
metalc
2.332
C
CYS
77
C
SG
CYS
38
1_555
C
ZN
202
G
ZN
ZN
1_555
metalc
2.282
C
CYS
80
C
SG
CYS
41
1_555
C
ZN
202
G
ZN
ZN
1_555
metalc
2.335
C
CYS
83
C
SG
CYS
44
1_555
C
ZN
202
G
ZN
ZN
1_555
metalc
2.379
C
CYS
93
C
SG
CYS
54
1_555
C
ZN
202
G
ZN
ZN
1_555
metalc
2.303
C
CYS
98
C
SG
CYS
59
1_555
C
ZN
201
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
4
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
4
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N3
DC
12
1_555
B
DG
1
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N4
DC
12
1_555
B
DG
1
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
O2
DC
12
1_555
B
DG
1
B
N2
DG
1
1_555
DNA BINDING PROTEIN/DNA
CXXC, DNA methylation, DNA BINDING PROTEIN-DNA complex
A0JP82_XENTR
UNP
2
58
A0JP82
SNKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPMKG
4HP3
PDB
1
4HP3
58
111
4HP3
58
111
A0JP82
C
1
19
72
1
12
4HP3
1
12
4HP3
A
2
1
12
1
12
4HP3
1
12
4HP3
B
2
1
12
1
expression tag
MET
40
4HP3
C
A0JP82
UNP
1
1
expression tag
HIS
41
4HP3
C
A0JP82
UNP
2
1
expression tag
HIS
42
4HP3
C
A0JP82
UNP
3
1
expression tag
HIS
43
4HP3
C
A0JP82
UNP
4
1
expression tag
HIS
44
4HP3
C
A0JP82
UNP
5
1
expression tag
HIS
45
4HP3
C
A0JP82
UNP
6
1
expression tag
HIS
46
4HP3
C
A0JP82
UNP
7
1
expression tag
SER
47
4HP3
C
A0JP82
UNP
8
1
expression tag
SER
48
4HP3
C
A0JP82
UNP
9
1
expression tag
GLY
49
4HP3
C
A0JP82
UNP
10
1
expression tag
ARG
50
4HP3
C
A0JP82
UNP
11
1
expression tag
GLU
51
4HP3
C
A0JP82
UNP
12
1
expression tag
ASN
52
4HP3
C
A0JP82
UNP
13
1
expression tag
LEU
53
4HP3
C
A0JP82
UNP
14
1
expression tag
TYR
54
4HP3
C
A0JP82
UNP
15
1
expression tag
PHE
55
4HP3
C
A0JP82
UNP
16
1
expression tag
GLN
56
4HP3
C
A0JP82
UNP
17
1
expression tag
GLY
57
4HP3
C
A0JP82
UNP
18
BINDING SITE FOR RESIDUE ZN C 201
C
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN C 202
C
ZN
202
Software
4
C
CYS
65
C
CYS
26
4
1_555
C
CYS
68
C
CYS
29
4
1_555
C
CYS
71
C
CYS
32
4
1_555
C
CYS
98
C
CYS
59
4
1_555
C
CYS
77
C
CYS
38
4
1_555
C
CYS
80
C
CYS
41
4
1_555
C
CYS
83
C
CYS
44
4
1_555
C
CYS
93
C
CYS
54
4
1_555
5
C 1 2 1