0.007113
0.000000
0.002872
0.000000
0.013192
0.000000
0.000000
0.000000
0.019720
0.00000
0.00000
0.00000
McLellan, J.S.
Gorman, J.
Haynes, B.F.
Kwong, P.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
111.99
90.00
140.594
75.804
54.688
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
S
C
N
90
R
C
N
91
S
C
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
N
Y
167
N
C
Y
168
N
C
Y
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
S
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
N
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
S
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
R
C
N
274
R
C
N
275
R
C
N
276
S
C
N
277
R
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
N
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
US
Immunity
IUNIEH
2048
1074-7613
38
176
186
10.1016/j.immuni.2012.11.011
23313589
Vaccine Induction of Antibodies against a Structurally Heterogeneous Site of Immune Pressure within HIV-1 Envelope Protein Variable Regions 1 and 2.
2013
10.2210/pdb4hpo/pdb
pdb_00004hpo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200
1
CCD
2012-03-10
MARMOSAIC 225 mm CCD
Si (220)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
22-BM
APS
1.00
SYNCHROTRON
APS BEAMLINE 22-BM
25035.146
CH58 Fab heavy chain
1
man
polymer
23154.309
CH58 Fab light chain
1
man
polymer
2349.812
Envelope glycoprotein gp160
UNP residues 160-178
1
syn
polymer
367.349
alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
403
nat
water
no
no
EVQLVQSGAEVKKPGESLKISCKGSGYRFTSYWIVWVRQMPGKGLEWMGIIYPGDFDTKYSPSFQGQVTISADKSISTAY
LQWSSLKASDTAMYYCARLGGRYYHDSSGYYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
EVQLVQSGAEVKKPGESLKISCKGSGYRFTSYWIVWVRQMPGKGLEWMGIIYPGDFDTKYSPSFQGQVTISADKSISTAY
LQWSSLKASDTAMYYCARLGGRYYHDSSGYYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
H
polypeptide(L)
no
no
NFMLTQPHSVSESPGKTVTISCTRSSGSVASDYVQWYQQRPGSAPTTVVYEDNQRPSGVPDRFSGSIDSSSNSASLTISG
LKTEDEADYYCQSYDNSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
NFMLTQPHSVSESPGKTVTISCTRSSGSVASDYVQWYQQRPGSAPTTVVYEDNQRPSGVPDRFSGSIDSSSNSASLTISG
LKTEDEADYYCQSYDNSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
L
polypeptide(L)
no
no
ELRDKKQKVHALFYKLDIV
ELRDKKQKVHALFYKLDIV
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
HEK293
9606
Homo sapiens
human
sample
9606
Homo sapiens
HEK293
9606
Homo sapiens
1
2.67
53.99
VAPOR DIFFUSION, HANGING DROP
6.5
14% (w/v) PEG 8000, 2% (v/v) MPD, 0.1 M imidazole pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2013-02-06
2
0
2020-07-29
2
1
2023-09-20
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
L
NAG
592
n
A
NAG
1
L
FUC
593
n
A
FUC
2
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2012-10-24
REL
REL
oligosaccharide
LFucpa1-6DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2/a6-b1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(6+1)][a-L-Fucp]{}}}
4
PDB-CARE
LINUCS
C1
O6
FUC
NAG
2
1
4
O1
HO6
sing
n
n
HOH
water
peptide from HIV-1 V2 region
11676
Human immunodeficiency virus 1
sample
3H0T
PDB ENTRIES 3H0T, 3UJJ
PDB
experimental model
3UJJ
PDB ENTRIES 3H0T, 3UJJ
PDB
experimental model
HOH
3
5
HOH
HOH
301
H
HOH
9
5
HOH
HOH
302
H
HOH
17
5
HOH
HOH
303
H
HOH
19
5
HOH
HOH
304
H
HOH
29
5
HOH
HOH
305
H
HOH
37
5
HOH
HOH
306
H
HOH
45
5
HOH
HOH
307
H
HOH
47
5
HOH
HOH
308
H
HOH
48
5
HOH
HOH
309
H
HOH
49
5
HOH
HOH
310
H
HOH
52
5
HOH
HOH
311
H
HOH
60
5
HOH
HOH
312
H
HOH
61
5
HOH
HOH
313
H
HOH
62
5
HOH
HOH
314
H
HOH
66
5
HOH
HOH
315
H
HOH
67
5
HOH
HOH
316
H
HOH
68
5
HOH
HOH
317
H
HOH
71
5
HOH
HOH
318
H
HOH
73
5
HOH
HOH
319
H
HOH
74
5
HOH
HOH
320
H
HOH
76
5
HOH
HOH
321
H
HOH
77
5
HOH
HOH
322
H
HOH
78
5
HOH
HOH
323
H
HOH
79
5
HOH
HOH
324
H
HOH
80
5
HOH
HOH
325
H
HOH
81
5
HOH
HOH
326
H
HOH
83
5
HOH
HOH
327
H
HOH
84
5
HOH
HOH
328
H
HOH
90
5
HOH
HOH
329
H
HOH
92
5
HOH
HOH
330
H
HOH
94
5
HOH
HOH
331
H
HOH
100
5
HOH
HOH
332
H
HOH
101
5
HOH
HOH
333
H
HOH
103
5
HOH
HOH
334
H
HOH
106
5
HOH
HOH
335
H
HOH
108
5
HOH
HOH
336
H
HOH
110
5
HOH
HOH
337
H
HOH
111
5
HOH
HOH
338
H
HOH
112
5
HOH
HOH
339
H
HOH
117
5
HOH
HOH
340
H
HOH
118
5
HOH
HOH
341
H
HOH
119
5
HOH
HOH
342
H
HOH
120
5
HOH
HOH
343
H
HOH
121
5
HOH
HOH
344
H
HOH
130
5
HOH
HOH
345
H
HOH
131
5
HOH
HOH
346
H
HOH
133
5
HOH
HOH
347
H
HOH
134
5
HOH
HOH
348
H
HOH
137
5
HOH
HOH
349
H
HOH
141
5
HOH
HOH
350
H
HOH
145
5
HOH
HOH
351
H
HOH
147
5
HOH
HOH
352
H
HOH
149
5
HOH
HOH
353
H
HOH
154
5
HOH
HOH
354
H
HOH
170
5
HOH
HOH
355
H
HOH
171
5
HOH
HOH
356
H
HOH
172
5
HOH
HOH
357
H
HOH
177
5
HOH
HOH
358
H
HOH
179
5
HOH
HOH
359
H
HOH
180
5
HOH
HOH
360
H
HOH
183
5
HOH
HOH
361
H
HOH
189
5
HOH
HOH
362
H
HOH
190
5
HOH
HOH
363
H
HOH
191
5
HOH
HOH
364
H
HOH
192
5
HOH
HOH
365
H
HOH
193
5
HOH
HOH
366
H
HOH
194
5
HOH
HOH
367
H
HOH
197
5
HOH
HOH
368
H
HOH
199
5
HOH
HOH
369
H
HOH
200
5
HOH
HOH
370
H
HOH
203
5
HOH
HOH
371
H
HOH
205
5
HOH
HOH
372
H
HOH
208
5
HOH
HOH
373
H
HOH
211
5
HOH
HOH
374
H
HOH
212
5
HOH
HOH
375
H
HOH
213
5
HOH
HOH
376
H
HOH
214
5
HOH
HOH
377
H
HOH
216
5
HOH
HOH
378
H
HOH
217
5
HOH
HOH
379
H
HOH
218
5
HOH
HOH
380
H
HOH
222
5
HOH
HOH
381
H
HOH
224
5
HOH
HOH
382
H
HOH
227
5
HOH
HOH
383
H
HOH
228
5
HOH
HOH
384
H
HOH
231
5
HOH
HOH
385
H
HOH
239
5
HOH
HOH
386
H
HOH
240
5
HOH
HOH
387
H
HOH
243
5
HOH
HOH
388
H
HOH
246
5
HOH
HOH
389
H
HOH
247
5
HOH
HOH
390
H
HOH
248
5
HOH
HOH
391
H
HOH
252
5
HOH
HOH
392
H
HOH
255
5
HOH
HOH
393
H
HOH
256
5
HOH
HOH
394
H
HOH
257
5
HOH
HOH
395
H
HOH
258
5
HOH
HOH
396
H
HOH
260
5
HOH
HOH
397
H
HOH
261
5
HOH
HOH
398
H
HOH
267
5
HOH
HOH
399
H
HOH
271
5
HOH
HOH
400
H
HOH
273
5
HOH
HOH
401
H
HOH
274
5
HOH
HOH
402
H
HOH
275
5
HOH
HOH
403
H
HOH
281
5
HOH
HOH
404
H
HOH
282
5
HOH
HOH
405
H
HOH
285
5
HOH
HOH
406
H
HOH
286
5
HOH
HOH
407
H
HOH
287
5
HOH
HOH
408
H
HOH
290
5
HOH
HOH
409
H
HOH
293
5
HOH
HOH
410
H
HOH
299
5
HOH
HOH
411
H
HOH
302
5
HOH
HOH
412
H
HOH
303
5
HOH
HOH
413
H
HOH
306
5
HOH
HOH
414
H
HOH
315
5
HOH
HOH
415
H
HOH
319
5
HOH
HOH
416
H
HOH
326
5
HOH
HOH
417
H
HOH
327
5
HOH
HOH
418
H
HOH
330
5
HOH
HOH
419
H
HOH
333
5
HOH
HOH
420
H
HOH
339
5
HOH
HOH
421
H
HOH
343
5
HOH
HOH
422
H
HOH
348
5
HOH
HOH
423
H
HOH
349
5
HOH
HOH
424
H
HOH
351
5
HOH
HOH
425
H
HOH
353
5
HOH
HOH
426
H
HOH
354
5
HOH
HOH
427
H
HOH
355
5
HOH
HOH
428
H
HOH
357
5
HOH
HOH
429
H
HOH
358
5
HOH
HOH
430
H
HOH
361
5
HOH
HOH
431
H
HOH
362
5
HOH
HOH
432
H
HOH
363
5
HOH
HOH
433
H
HOH
364
5
HOH
HOH
434
H
HOH
365
5
HOH
HOH
435
H
HOH
366
5
HOH
HOH
436
H
HOH
369
5
HOH
HOH
437
H
HOH
370
5
HOH
HOH
438
H
HOH
371
5
HOH
HOH
439
H
HOH
372
5
HOH
HOH
440
H
HOH
377
5
HOH
HOH
441
H
HOH
378
5
HOH
HOH
442
H
HOH
379
5
HOH
HOH
443
H
HOH
381
5
HOH
HOH
444
H
HOH
383
5
HOH
HOH
445
H
HOH
384
5
HOH
HOH
446
H
HOH
385
5
HOH
HOH
447
H
HOH
386
5
HOH
HOH
448
H
HOH
387
5
HOH
HOH
449
H
HOH
388
5
HOH
HOH
450
H
HOH
394
5
HOH
HOH
451
H
HOH
397
5
HOH
HOH
452
H
HOH
403
5
HOH
HOH
453
H
HOH
1
5
HOH
HOH
401
L
HOH
2
5
HOH
HOH
402
L
HOH
4
5
HOH
HOH
403
L
HOH
5
5
HOH
HOH
404
L
HOH
6
5
HOH
HOH
405
L
HOH
7
5
HOH
HOH
406
L
HOH
8
5
HOH
HOH
407
L
HOH
10
5
HOH
HOH
408
L
HOH
11
5
HOH
HOH
409
L
HOH
12
5
HOH
HOH
410
L
HOH
13
5
HOH
HOH
411
L
HOH
14
5
HOH
HOH
412
L
HOH
15
5
HOH
HOH
413
L
HOH
16
5
HOH
HOH
414
L
HOH
18
5
HOH
HOH
415
L
HOH
20
5
HOH
HOH
416
L
HOH
21
5
HOH
HOH
417
L
HOH
22
5
HOH
HOH
418
L
HOH
24
5
HOH
HOH
419
L
HOH
25
5
HOH
HOH
420
L
HOH
26
5
HOH
HOH
421
L
HOH
27
5
HOH
HOH
422
L
HOH
28
5
HOH
HOH
423
L
HOH
30
5
HOH
HOH
424
L
HOH
31
5
HOH
HOH
425
L
HOH
32
5
HOH
HOH
426
L
HOH
33
5
HOH
HOH
427
L
HOH
34
5
HOH
HOH
428
L
HOH
35
5
HOH
HOH
429
L
HOH
36
5
HOH
HOH
430
L
HOH
39
5
HOH
HOH
431
L
HOH
40
5
HOH
HOH
432
L
HOH
41
5
HOH
HOH
433
L
HOH
42
5
HOH
HOH
434
L
HOH
43
5
HOH
HOH
435
L
HOH
44
5
HOH
HOH
436
L
HOH
46
5
HOH
HOH
437
L
HOH
50
5
HOH
HOH
438
L
HOH
51
5
HOH
HOH
439
L
HOH
53
5
HOH
HOH
440
L
HOH
55
5
HOH
HOH
441
L
HOH
56
5
HOH
HOH
442
L
HOH
57
5
HOH
HOH
443
L
HOH
58
5
HOH
HOH
444
L
HOH
59
5
HOH
HOH
445
L
HOH
63
5
HOH
HOH
446
L
HOH
64
5
HOH
HOH
447
L
HOH
65
5
HOH
HOH
448
L
HOH
69
5
HOH
HOH
449
L
HOH
70
5
HOH
HOH
450
L
HOH
72
5
HOH
HOH
451
L
HOH
75
5
HOH
HOH
452
L
HOH
85
5
HOH
HOH
453
L
HOH
86
5
HOH
HOH
454
L
HOH
87
5
HOH
HOH
455
L
HOH
89
5
HOH
HOH
456
L
HOH
91
5
HOH
HOH
457
L
HOH
93
5
HOH
HOH
458
L
HOH
95
5
HOH
HOH
459
L
HOH
96
5
HOH
HOH
460
L
HOH
97
5
HOH
HOH
461
L
HOH
98
5
HOH
HOH
462
L
HOH
102
5
HOH
HOH
463
L
HOH
104
5
HOH
HOH
464
L
HOH
105
5
HOH
HOH
465
L
HOH
109
5
HOH
HOH
466
L
HOH
113
5
HOH
HOH
467
L
HOH
114
5
HOH
HOH
468
L
HOH
116
5
HOH
HOH
469
L
HOH
122
5
HOH
HOH
470
L
HOH
123
5
HOH
HOH
471
L
HOH
124
5
HOH
HOH
472
L
HOH
125
5
HOH
HOH
473
L
HOH
126
5
HOH
HOH
474
L
HOH
127
5
HOH
HOH
475
L
HOH
128
5
HOH
HOH
476
L
HOH
129
5
HOH
HOH
477
L
HOH
132
5
HOH
HOH
478
L
HOH
135
5
HOH
HOH
479
L
HOH
138
5
HOH
HOH
480
L
HOH
139
5
HOH
HOH
481
L
HOH
140
5
HOH
HOH
482
L
HOH
142
5
HOH
HOH
483
L
HOH
143
5
HOH
HOH
484
L
HOH
144
5
HOH
HOH
485
L
HOH
146
5
HOH
HOH
486
L
HOH
148
5
HOH
HOH
487
L
HOH
150
5
HOH
HOH
488
L
HOH
151
5
HOH
HOH
489
L
HOH
152
5
HOH
HOH
490
L
HOH
153
5
HOH
HOH
491
L
HOH
155
5
HOH
HOH
492
L
HOH
156
5
HOH
HOH
493
L
HOH
158
5
HOH
HOH
494
L
HOH
159
5
HOH
HOH
495
L
HOH
161
5
HOH
HOH
496
L
HOH
162
5
HOH
HOH
497
L
HOH
163
5
HOH
HOH
498
L
HOH
164
5
HOH
HOH
499
L
HOH
165
5
HOH
HOH
500
L
HOH
166
5
HOH
HOH
501
L
HOH
167
5
HOH
HOH
502
L
HOH
168
5
HOH
HOH
503
L
HOH
173
5
HOH
HOH
504
L
HOH
175
5
HOH
HOH
505
L
HOH
176
5
HOH
HOH
506
L
HOH
181
5
HOH
HOH
507
L
HOH
182
5
HOH
HOH
508
L
HOH
184
5
HOH
HOH
509
L
HOH
185
5
HOH
HOH
510
L
HOH
186
5
HOH
HOH
511
L
HOH
187
5
HOH
HOH
512
L
HOH
188
5
HOH
HOH
513
L
HOH
195
5
HOH
HOH
514
L
HOH
196
5
HOH
HOH
515
L
HOH
198
5
HOH
HOH
516
L
HOH
201
5
HOH
HOH
517
L
HOH
202
5
HOH
HOH
518
L
HOH
204
5
HOH
HOH
519
L
HOH
206
5
HOH
HOH
520
L
HOH
207
5
HOH
HOH
521
L
HOH
209
5
HOH
HOH
522
L
HOH
210
5
HOH
HOH
523
L
HOH
215
5
HOH
HOH
524
L
HOH
219
5
HOH
HOH
525
L
HOH
220
5
HOH
HOH
526
L
HOH
221
5
HOH
HOH
527
L
HOH
223
5
HOH
HOH
528
L
HOH
225
5
HOH
HOH
529
L
HOH
226
5
HOH
HOH
530
L
HOH
229
5
HOH
HOH
531
L
HOH
230
5
HOH
HOH
532
L
HOH
232
5
HOH
HOH
533
L
HOH
233
5
HOH
HOH
534
L
HOH
234
5
HOH
HOH
535
L
HOH
235
5
HOH
HOH
536
L
HOH
236
5
HOH
HOH
537
L
HOH
237
5
HOH
HOH
538
L
HOH
238
5
HOH
HOH
539
L
HOH
241
5
HOH
HOH
540
L
HOH
242
5
HOH
HOH
541
L
HOH
244
5
HOH
HOH
542
L
HOH
245
5
HOH
HOH
543
L
HOH
249
5
HOH
HOH
544
L
HOH
250
5
HOH
HOH
545
L
HOH
251
5
HOH
HOH
546
L
HOH
253
5
HOH
HOH
547
L
HOH
254
5
HOH
HOH
548
L
HOH
259
5
HOH
HOH
549
L
HOH
262
5
HOH
HOH
550
L
HOH
263
5
HOH
HOH
551
L
HOH
264
5
HOH
HOH
552
L
HOH
265
5
HOH
HOH
553
L
HOH
266
5
HOH
HOH
554
L
HOH
268
5
HOH
HOH
555
L
HOH
269
5
HOH
HOH
556
L
HOH
270
5
HOH
HOH
557
L
HOH
272
5
HOH
HOH
558
L
HOH
276
5
HOH
HOH
559
L
HOH
277
5
HOH
HOH
560
L
HOH
278
5
HOH
HOH
561
L
HOH
279
5
HOH
HOH
562
L
HOH
280
5
HOH
HOH
563
L
HOH
283
5
HOH
HOH
564
L
HOH
284
5
HOH
HOH
565
L
HOH
291
5
HOH
HOH
566
L
HOH
292
5
HOH
HOH
567
L
HOH
294
5
HOH
HOH
568
L
HOH
295
5
HOH
HOH
569
L
HOH
296
5
HOH
HOH
570
L
HOH
297
5
HOH
HOH
571
L
HOH
298
5
HOH
HOH
572
L
HOH
300
5
HOH
HOH
573
L
HOH
301
5
HOH
HOH
574
L
HOH
304
5
HOH
HOH
575
L
HOH
305
5
HOH
HOH
576
L
HOH
307
5
HOH
HOH
577
L
HOH
308
5
HOH
HOH
578
L
HOH
310
5
HOH
HOH
579
L
HOH
312
5
HOH
HOH
580
L
HOH
313
5
HOH
HOH
581
L
HOH
314
5
HOH
HOH
582
L
HOH
317
5
HOH
HOH
583
L
HOH
318
5
HOH
HOH
584
L
HOH
320
5
HOH
HOH
585
L
HOH
321
5
HOH
HOH
586
L
HOH
322
5
HOH
HOH
587
L
HOH
323
5
HOH
HOH
588
L
HOH
324
5
HOH
HOH
589
L
HOH
325
5
HOH
HOH
590
L
HOH
328
5
HOH
HOH
591
L
HOH
329
5
HOH
HOH
592
L
HOH
332
5
HOH
HOH
593
L
HOH
334
5
HOH
HOH
594
L
HOH
335
5
HOH
HOH
595
L
HOH
336
5
HOH
HOH
596
L
HOH
337
5
HOH
HOH
597
L
HOH
338
5
HOH
HOH
598
L
HOH
341
5
HOH
HOH
599
L
HOH
342
5
HOH
HOH
600
L
HOH
344
5
HOH
HOH
601
L
HOH
345
5
HOH
HOH
602
L
HOH
346
5
HOH
HOH
603
L
HOH
347
5
HOH
HOH
604
L
HOH
350
5
HOH
HOH
605
L
HOH
352
5
HOH
HOH
606
L
HOH
356
5
HOH
HOH
607
L
HOH
359
5
HOH
HOH
608
L
HOH
360
5
HOH
HOH
609
L
HOH
367
5
HOH
HOH
610
L
HOH
373
5
HOH
HOH
611
L
HOH
374
5
HOH
HOH
612
L
HOH
375
5
HOH
HOH
613
L
HOH
376
5
HOH
HOH
614
L
HOH
380
5
HOH
HOH
615
L
HOH
382
5
HOH
HOH
616
L
HOH
389
5
HOH
HOH
617
L
HOH
390
5
HOH
HOH
618
L
HOH
391
5
HOH
HOH
619
L
HOH
392
5
HOH
HOH
620
L
HOH
393
5
HOH
HOH
621
L
HOH
395
5
HOH
HOH
622
L
HOH
396
5
HOH
HOH
623
L
HOH
398
5
HOH
HOH
624
L
HOH
399
5
HOH
HOH
625
L
HOH
400
5
HOH
HOH
626
L
HOH
401
5
HOH
HOH
627
L
HOH
402
5
HOH
HOH
628
L
HOH
23
5
HOH
HOH
201
P
HOH
38
5
HOH
HOH
202
P
HOH
54
5
HOH
HOH
203
P
HOH
82
5
HOH
HOH
204
P
HOH
88
5
HOH
HOH
205
P
HOH
99
5
HOH
HOH
206
P
HOH
107
5
HOH
HOH
207
P
HOH
115
5
HOH
HOH
208
P
HOH
136
5
HOH
HOH
209
P
HOH
157
5
HOH
HOH
210
P
HOH
160
5
HOH
HOH
211
P
HOH
169
5
HOH
HOH
212
P
HOH
174
5
HOH
HOH
213
P
HOH
178
5
HOH
HOH
214
P
HOH
288
5
HOH
HOH
215
P
HOH
289
5
HOH
HOH
216
P
HOH
309
5
HOH
HOH
217
P
HOH
311
5
HOH
HOH
218
P
HOH
316
5
HOH
HOH
219
P
HOH
331
5
HOH
HOH
220
P
HOH
340
5
HOH
HOH
221
P
HOH
368
5
HOH
HOH
222
P
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLU
16
n
16
GLU
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
GLY
24
n
24
GLY
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
ARG
28
n
28
ARG
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
TYR
32
n
32
TYR
32
H
TRP
33
n
33
TRP
33
H
ILE
34
n
34
ILE
34
H
VAL
35
n
35
VAL
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
MET
40
n
40
MET
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
ILE
50
n
50
ILE
50
H
ILE
51
n
51
ILE
51
H
TYR
52
n
52
TYR
52
H
PRO
52
n
53
A
PRO
52
H
GLY
53
n
54
GLY
53
H
ASP
54
n
55
ASP
54
H
PHE
55
n
56
PHE
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
LYS
58
n
59
LYS
58
H
TYR
59
n
60
TYR
59
H
SER
60
n
61
SER
60
H
PRO
61
n
62
PRO
61
H
SER
62
n
63
SER
62
H
PHE
63
n
64
PHE
63
H
GLN
64
n
65
GLN
64
H
GLY
65
n
66
GLY
65
H
GLN
66
n
67
GLN
66
H
VAL
67
n
68
VAL
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
SER
70
n
71
SER
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
LYS
73
n
74
LYS
73
H
SER
74
n
75
SER
74
H
ILE
75
n
76
ILE
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
TRP
82
n
83
TRP
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
ALA
84
n
88
ALA
84
H
SER
85
n
89
SER
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
MET
89
n
93
MET
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
LEU
95
n
99
LEU
95
H
GLY
96
n
100
GLY
96
H
GLY
97
n
101
GLY
97
H
ARG
98
n
102
ARG
98
H
TYR
99
n
103
TYR
99
H
TYR
100
n
104
TYR
100
H
HIS
100
n
105
A
HIS
100
H
ASP
100
n
106
B
ASP
100
H
SER
100
n
107
C
SER
100
H
SER
100
n
108
D
SER
100
H
GLY
100
n
109
E
GLY
100
H
TYR
100
n
110
F
TYR
100
H
TYR
100
n
111
G
TYR
100
H
TYR
100
n
112
H
TYR
100
H
LEU
100
n
113
I
LEU
100
H
ASP
101
n
114
ASP
101
H
TYR
102
n
115
TYR
102
H
TRP
103
n
116
TRP
103
H
GLY
104
n
117
GLY
104
H
GLN
105
n
118
GLN
105
H
GLY
106
n
119
GLY
106
H
THR
107
n
120
THR
107
H
LEU
108
n
121
LEU
108
H
VAL
109
n
122
VAL
109
H
THR
110
n
123
THR
110
H
VAL
111
n
124
VAL
111
H
SER
112
n
125
SER
112
H
n
126
113
H
n
127
114
H
SER
115
n
128
SER
115
H
THR
116
n
129
THR
116
H
LYS
117
n
130
LYS
117
H
GLY
118
n
131
GLY
118
H
PRO
119
n
132
PRO
119
H
SER
120
n
133
SER
120
H
VAL
121
n
134
VAL
121
H
PHE
122
n
135
PHE
122
H
PRO
123
n
136
PRO
123
H
LEU
124
n
137
LEU
124
H
ALA
125
n
138
ALA
125
H
PRO
126
n
139
PRO
126
H
SER
127
n
140
SER
127
H
n
141
128
H
n
142
129
H
n
143
130
H
n
144
131
H
n
145
132
H
n
146
133
H
n
147
134
H
THR
135
n
148
THR
135
H
ALA
136
n
149
ALA
136
H
ALA
137
n
150
ALA
137
H
LEU
138
n
151
LEU
138
H
GLY
139
n
152
GLY
139
H
CYS
140
n
153
CYS
140
H
LEU
141
n
154
LEU
141
H
VAL
142
n
155
VAL
142
H
LYS
143
n
156
LYS
143
H
ASP
144
n
157
ASP
144
H
TYR
145
n
158
TYR
145
H
PHE
146
n
159
PHE
146
H
PRO
147
n
160
PRO
147
H
GLU
148
n
161
GLU
148
H
PRO
149
n
162
PRO
149
H
VAL
150
n
163
VAL
150
H
THR
151
n
164
THR
151
H
VAL
152
n
165
VAL
152
H
SER
153
n
166
SER
153
H
TRP
154
n
167
TRP
154
H
ASN
155
n
168
ASN
155
H
SER
156
n
169
SER
156
H
GLY
157
n
170
GLY
157
H
ALA
158
n
171
ALA
158
H
LEU
159
n
172
LEU
159
H
THR
160
n
173
THR
160
H
SER
161
n
174
SER
161
H
GLY
162
n
175
GLY
162
H
VAL
163
n
176
VAL
163
H
HIS
164
n
177
HIS
164
H
THR
165
n
178
THR
165
H
PHE
166
n
179
PHE
166
H
PRO
167
n
180
PRO
167
H
ALA
168
n
181
ALA
168
H
VAL
169
n
182
VAL
169
H
LEU
170
n
183
LEU
170
H
GLN
171
n
184
GLN
171
H
SER
172
n
185
SER
172
H
SER
173
n
186
SER
173
H
GLY
174
n
187
GLY
174
H
LEU
175
n
188
LEU
175
H
TYR
176
n
189
TYR
176
H
SER
177
n
190
SER
177
H
LEU
178
n
191
LEU
178
H
SER
179
n
192
SER
179
H
SER
180
n
193
SER
180
H
VAL
181
n
194
VAL
181
H
VAL
182
n
195
VAL
182
H
THR
183
n
196
THR
183
H
VAL
184
n
197
VAL
184
H
PRO
185
n
198
PRO
185
H
SER
186
n
199
SER
186
H
SER
187
n
200
SER
187
H
SER
188
n
201
SER
188
H
LEU
189
n
202
LEU
189
H
GLY
190
n
203
GLY
190
H
THR
191
n
204
THR
191
H
GLN
192
n
205
GLN
192
H
THR
193
n
206
THR
193
H
TYR
194
n
207
TYR
194
H
ILE
195
n
208
ILE
195
H
CYS
196
n
209
CYS
196
H
ASN
197
n
210
ASN
197
H
VAL
198
n
211
VAL
198
H
ASN
199
n
212
ASN
199
H
HIS
200
n
213
HIS
200
H
LYS
201
n
214
LYS
201
H
PRO
202
n
215
PRO
202
H
SER
203
n
216
SER
203
H
ASN
204
n
217
ASN
204
H
THR
205
n
218
THR
205
H
LYS
206
n
219
LYS
206
H
VAL
207
n
220
VAL
207
H
ASP
208
n
221
ASP
208
H
LYS
209
n
222
LYS
209
H
ARG
210
n
223
ARG
210
H
VAL
211
n
224
VAL
211
H
GLU
212
n
225
GLU
212
H
PRO
213
n
226
PRO
213
H
n
227
214
H
n
228
215
H
n
229
216
H
n
230
217
H
n
231
218
H
ASN
1
n
1
ASN
1
L
PHE
2
n
2
PHE
2
L
MET
3
n
3
MET
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
PRO
7
n
7
PRO
7
L
HIS
8
n
8
HIS
8
L
SER
9
n
9
SER
9
L
VAL
11
n
10
VAL
11
L
SER
12
n
11
SER
12
L
GLU
13
n
12
GLU
13
L
SER
14
n
13
SER
14
L
PRO
15
n
14
PRO
15
L
GLY
16
n
15
GLY
16
L
LYS
17
n
16
LYS
17
L
THR
18
n
17
THR
18
L
VAL
19
n
18
VAL
19
L
THR
20
n
19
THR
20
L
ILE
21
n
20
ILE
21
L
SER
22
n
21
SER
22
L
CYS
23
n
22
CYS
23
L
THR
24
n
23
THR
24
L
ARG
25
n
24
ARG
25
L
SER
26
n
25
SER
26
L
SER
27
n
26
SER
27
L
GLY
27
n
27
A
GLY
27
L
SER
27
n
28
B
SER
27
L
VAL
28
n
29
VAL
28
L
ALA
29
n
30
ALA
29
L
SER
30
n
31
SER
30
L
ASP
31
n
32
ASP
31
L
TYR
32
n
33
TYR
32
L
VAL
33
n
34
VAL
33
L
GLN
34
n
35
GLN
34
L
TRP
35
n
36
TRP
35
L
TYR
36
n
37
TYR
36
L
GLN
37
n
38
GLN
37
L
GLN
38
n
39
GLN
38
L
ARG
39
n
40
ARG
39
L
PRO
40
n
41
PRO
40
L
GLY
41
n
42
GLY
41
L
SER
42
n
43
SER
42
L
ALA
43
n
44
ALA
43
L
PRO
44
n
45
PRO
44
L
THR
45
n
46
THR
45
L
THR
46
n
47
THR
46
L
VAL
47
n
48
VAL
47
L
VAL
48
n
49
VAL
48
L
TYR
49
n
50
TYR
49
L
GLU
50
n
51
GLU
50
L
ASP
51
n
52
ASP
51
L
ASN
52
n
53
ASN
52
L
GLN
53
n
54
GLN
53
L
ARG
54
n
55
ARG
54
L
PRO
55
n
56
PRO
55
L
SER
56
n
57
SER
56
L
GLY
57
n
58
GLY
57
L
VAL
58
n
59
VAL
58
L
PRO
59
n
60
PRO
59
L
ASP
60
n
61
ASP
60
L
ARG
61
n
62
ARG
61
L
PHE
62
n
63
PHE
62
L
SER
63
n
64
SER
63
L
GLY
64
n
65
GLY
64
L
SER
65
n
66
SER
65
L
ILE
66
n
67
ILE
66
L
ASP
66
n
68
A
ASP
66
L
SER
66
n
69
B
SER
66
L
SER
67
n
70
SER
67
L
SER
68
n
71
SER
68
L
ASN
69
n
72
ASN
69
L
SER
70
n
73
SER
70
L
ALA
71
n
74
ALA
71
L
SER
72
n
75
SER
72
L
LEU
73
n
76
LEU
73
L
THR
74
n
77
THR
74
L
ILE
75
n
78
ILE
75
L
SER
76
n
79
SER
76
L
GLY
77
n
80
GLY
77
L
LEU
78
n
81
LEU
78
L
LYS
79
n
82
LYS
79
L
THR
80
n
83
THR
80
L
GLU
81
n
84
GLU
81
L
ASP
82
n
85
ASP
82
L
GLU
83
n
86
GLU
83
L
ALA
84
n
87
ALA
84
L
ASP
85
n
88
ASP
85
L
TYR
86
n
89
TYR
86
L
TYR
87
n
90
TYR
87
L
CYS
88
n
91
CYS
88
L
GLN
89
n
92
GLN
89
L
SER
90
n
93
SER
90
L
TYR
91
n
94
TYR
91
L
ASP
92
n
95
ASP
92
L
ASN
93
n
96
ASN
93
L
SER
94
n
97
SER
94
L
SER
95
n
98
SER
95
L
TRP
96
n
99
TRP
96
L
VAL
97
n
100
VAL
97
L
PHE
98
n
101
PHE
98
L
GLY
99
n
102
GLY
99
L
GLY
100
n
103
GLY
100
L
GLY
101
n
104
GLY
101
L
THR
102
n
105
THR
102
L
LYS
103
n
106
LYS
103
L
LEU
104
n
107
LEU
104
L
THR
105
n
108
THR
105
L
VAL
106
n
109
VAL
106
L
LEU
106
n
110
A
LEU
106
L
GLY
107
n
111
GLY
107
L
GLN
108
n
112
GLN
108
L
PRO
109
n
113
PRO
109
L
LYS
110
n
114
LYS
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
SER
114
n
118
SER
114
L
VAL
115
n
119
VAL
115
L
THR
116
n
120
THR
116
L
LEU
117
n
121
LEU
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLU
124
n
128
GLU
124
L
LEU
125
n
129
LEU
125
L
GLN
126
n
130
GLN
126
L
ALA
127
n
131
ALA
127
L
ASN
128
n
132
ASN
128
L
LYS
129
n
133
LYS
129
L
ALA
130
n
134
ALA
130
L
THR
131
n
135
THR
131
L
LEU
132
n
136
LEU
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
LEU
135
n
139
LEU
135
L
ILE
136
n
140
ILE
136
L
SER
137
n
141
SER
137
L
ASP
138
n
142
ASP
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
GLY
142
n
146
GLY
142
L
ALA
143
n
147
ALA
143
L
VAL
144
n
148
VAL
144
L
THR
145
n
149
THR
145
L
VAL
146
n
150
VAL
146
L
ALA
147
n
151
ALA
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ALA
150
n
154
ALA
150
L
ASP
151
n
155
ASP
151
L
SER
152
n
156
SER
152
L
SER
153
n
157
SER
153
L
PRO
154
n
158
PRO
154
L
VAL
155
n
159
VAL
155
L
LYS
156
n
160
LYS
156
L
ALA
157
n
161
ALA
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
GLU
160
n
164
GLU
160
L
THR
161
n
165
THR
161
L
THR
162
n
166
THR
162
L
THR
163
n
167
THR
163
L
PRO
164
n
168
PRO
164
L
SER
165
n
169
SER
165
L
LYS
166
n
170
LYS
166
L
GLN
167
n
171
GLN
167
L
SER
168
n
172
SER
168
L
ASN
169
n
173
ASN
169
L
ASN
170
n
174
ASN
170
L
LYS
171
n
175
LYS
171
L
TYR
172
n
176
TYR
172
L
ALA
173
n
177
ALA
173
L
ALA
174
n
178
ALA
174
L
SER
175
n
179
SER
175
L
SER
176
n
180
SER
176
L
TYR
177
n
181
TYR
177
L
LEU
178
n
182
LEU
178
L
SER
179
n
183
SER
179
L
LEU
180
n
184
LEU
180
L
THR
181
n
185
THR
181
L
PRO
182
n
186
PRO
182
L
GLU
183
n
187
GLU
183
L
GLN
184
n
188
GLN
184
L
TRP
185
n
189
TRP
185
L
LYS
186
n
190
LYS
186
L
SER
187
n
191
SER
187
L
HIS
188
n
192
HIS
188
L
ARG
189
n
193
ARG
189
L
SER
190
n
194
SER
190
L
TYR
191
n
195
TYR
191
L
SER
192
n
196
SER
192
L
CYS
193
n
197
CYS
193
L
GLN
194
n
198
GLN
194
L
VAL
195
n
199
VAL
195
L
THR
196
n
200
THR
196
L
HIS
197
n
201
HIS
197
L
GLU
198
n
202
GLU
198
L
GLY
199
n
203
GLY
199
L
SER
200
n
204
SER
200
L
THR
201
n
205
THR
201
L
VAL
202
n
206
VAL
202
L
GLU
203
n
207
GLU
203
L
LYS
204
n
208
LYS
204
L
THR
205
n
209
THR
205
L
VAL
206
n
210
VAL
206
L
ALA
207
n
211
ALA
207
L
PRO
208
n
212
PRO
208
L
THR
209
n
213
THR
209
L
n
214
210
L
n
215
211
L
n
216
212
L
n
1
164
P
n
2
165
P
n
3
166
P
ASP
167
n
4
ASP
167
P
LYS
168
n
5
LYS
168
P
LYS
169
n
6
LYS
169
P
GLN
170
n
7
GLN
170
P
LYS
171
n
8
LYS
171
P
VAL
172
n
9
VAL
172
P
HIS
173
n
10
HIS
173
P
ALA
174
n
11
ALA
174
P
LEU
175
n
12
LEU
175
P
PHE
176
n
13
PHE
176
P
TYR
177
n
14
TYR
177
P
LYS
178
n
15
LYS
178
P
LEU
179
n
16
LEU
179
P
ASP
180
n
17
ASP
180
P
ILE
181
n
18
ILE
181
P
n
19
182
P
3.3913
0.0220
-0.9612
1.0888
-0.0008
2.6377
0.0830
1.5186
0.4250
-0.2358
0.0435
0.1588
-0.2349
-0.5455
0.0129
0.3027
0.0348
-0.0196
0.6853
0.1196
0.2582
refined
-16.3033
6.9915
-20.4873
X-RAY DIFFRACTION
7.6942
1.1303
2.1211
4.1351
1.0109
3.8808
-0.0710
1.1424
0.1301
0.0091
0.1302
0.4975
0.0467
0.1812
-0.0025
0.2228
0.0070
0.0056
0.3602
-0.0224
0.5055
refined
-54.5119
6.4228
-3.4022
X-RAY DIFFRACTION
3.4642
-0.0368
-0.3889
2.0855
0.4377
1.4297
-0.0221
0.0234
-0.2229
0.0032
-0.0073
0.0034
0.0060
-0.0985
0.0272
0.1933
-0.0041
0.0017
0.1503
0.0045
0.1673
refined
-14.8200
-1.2705
-0.6103
X-RAY DIFFRACTION
1.8361
1.2947
0.2797
1.9711
0.9424
2.2237
0.3120
0.3235
-1.5384
-0.0673
-0.0199
-0.0025
0.4788
0.0883
-0.2957
0.4164
0.0256
-0.1618
0.3384
-0.1979
1.1598
refined
-45.6951
-6.9912
1.1493
X-RAY DIFFRACTION
5.0965
1.9463
-1.5454
8.0313
-4.6864
7.8430
-0.0243
1.0185
-0.1833
-0.6808
-0.2132
-0.3258
0.2523
0.4956
0.3366
0.2475
0.0154
0.0810
0.4756
-0.1095
0.2768
refined
0.1518
-2.2914
-18.1328
X-RAY DIFFRACTION
H
1
H
124
X-RAY DIFFRACTION
1
( CHAIN H AND RESID 1:124 )
H
125
H
213
X-RAY DIFFRACTION
2
( CHAIN H AND RESID 125:213 )
L
1
L
112
X-RAY DIFFRACTION
3
( CHAIN L AND RESID 1:112 )
L
113
L
209
X-RAY DIFFRACTION
4
( CHAIN L AND RESID 113:209 )
P
167
P
181
X-RAY DIFFRACTION
5
( CHAIN P AND ( RESID 167:181 OR RESID 201:222 ) )
P
201
P
222
X-RAY DIFFRACTION
5
( CHAIN P AND ( RESID 167:181 OR RESID 201:222 ) )
author_and_software_defined_assembly
PISA
3
trimeric
5560
-24
20270
L
ASN
93
GLYCOSYLATION SITE
B
ASN
96
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
VAL
5
A
N
VAL
5
H
O
LYS
23
A
O
LYS
23
H
N
CYS
22
A
N
CYS
22
H
O
ALA
78
A
O
ALA
79
H
O
THR
77
A
O
THR
78
H
N
ASP
72
A
N
ASP
73
H
N
GLU
10
A
N
GLU
10
H
O
THR
110
A
O
THR
123
H
O
VAL
109
A
O
VAL
122
H
N
ALA
88
A
N
ALA
92
H
O
MET
89
A
O
MET
93
H
N
GLN
39
A
N
GLN
39
H
N
ARG
38
A
N
ARG
38
H
O
GLU
46
A
O
GLU
46
H
N
ILE
50
A
N
ILE
50
H
O
LYS
58
A
O
LYS
59
H
N
GLU
10
A
N
GLU
10
H
O
THR
110
A
O
THR
123
H
O
VAL
109
A
O
VAL
122
H
N
ALA
88
A
N
ALA
92
H
N
GLY
96
A
N
GLY
100
H
H
O
TYR
100
A
O
TYR
112
H
N
SER
120
A
N
SER
133
H
O
LYS
143
A
O
LYS
156
H
N
VAL
142
A
N
VAL
155
H
O
LEU
178
A
O
LEU
191
H
O
VAL
181
A
O
VAL
194
H
N
HIS
164
A
N
HIS
177
H
N
SER
120
A
N
SER
133
H
O
LYS
143
A
O
LYS
156
H
N
VAL
142
A
N
VAL
155
H
O
LEU
178
A
O
LEU
191
H
O
SER
177
A
O
SER
190
H
N
VAL
169
A
N
VAL
182
H
N
SER
153
A
N
SER
166
H
O
ASN
197
A
O
ASN
210
H
N
VAL
198
A
N
VAL
211
H
O
VAL
207
A
O
VAL
220
L
N
THR
5
B
N
THR
5
L
O
THR
24
B
O
THR
23
L
N
VAL
19
B
N
VAL
18
L
O
ILE
75
B
O
ILE
78
L
O
SER
70
B
O
SER
73
A
L
N
ASP
66
B
N
ASP
68
L
N
VAL
11
B
N
VAL
10
L
O
LYS
103
B
O
LYS
106
L
O
LEU
104
B
O
LEU
107
L
N
ALA
84
B
N
ALA
87
L
O
ASP
85
B
O
ASP
88
L
N
GLN
38
B
N
GLN
39
L
N
TRP
35
B
N
TRP
36
L
O
VAL
47
B
O
VAL
48
L
N
VAL
11
B
N
VAL
10
L
O
LYS
103
B
O
LYS
106
L
O
LEU
104
B
O
LEU
107
L
N
ALA
84
B
N
ALA
87
L
N
ASP
92
B
N
ASP
95
L
O
SER
95
B
O
SER
98
L
N
SER
114
B
N
SER
118
L
O
SER
137
B
O
SER
141
L
N
CYS
134
B
N
CYS
138
L
O
SER
176
B
O
SER
180
L
O
TYR
177
B
O
TYR
181
L
N
GLU
160
B
N
GLU
164
L
N
SER
114
B
N
SER
118
L
O
SER
137
B
O
SER
141
L
N
CYS
134
B
N
CYS
138
L
O
SER
176
B
O
SER
180
L
O
ALA
173
B
O
ALA
177
L
N
SER
165
B
N
SER
169
L
O
SER
153
B
O
SER
157
L
N
ALA
150
B
N
ALA
154
L
N
THR
145
B
N
THR
149
L
O
THR
196
B
O
THR
200
L
N
VAL
195
B
N
VAL
199
L
O
VAL
202
B
O
VAL
206
1
H
SER
113
A
SER
126
1
Y
1
H
ALA
114
A
ALA
127
1
Y
1
H
SER
128
A
SER
141
1
Y
1
H
LYS
129
A
LYS
142
1
Y
1
H
SER
130
A
SER
143
1
Y
1
H
THR
131
A
THR
144
1
Y
1
H
SER
132
A
SER
145
1
Y
1
H
GLY
133
A
GLY
146
1
Y
1
H
GLY
134
A
GLY
147
1
Y
1
H
LYS
214
A
LYS
227
1
Y
1
H
SER
215
A
SER
228
1
Y
1
H
CYS
216
A
CYS
229
1
Y
1
H
ASP
217
A
ASP
230
1
Y
1
H
LYS
218
A
LYS
231
1
Y
1
L
GLU
210
B
GLU
214
1
Y
1
L
CYS
211
B
CYS
215
1
Y
1
L
SER
212
B
SER
216
1
Y
1
P
GLU
164
C
GLU
1
1
Y
1
P
LEU
165
C
LEU
2
1
Y
1
P
ARG
166
C
ARG
3
1
Y
1
P
VAL
182
C
VAL
19
1
Y
1
L
L
O
O
HOH
HOH
608
621
1.82
1
L
L
O
O
HOH
HOH
600
628
2.00
1
H
H
O
O
HOH
HOH
432
447
2.01
1
L
L
O
O
HOH
HOH
573
589
2.02
1
L
L
O
O
HOH
HOH
587
594
2.04
1
L
L
OH
O
TYR
HOH
172
605
2.04
1
H
H
O
O
HOH
HOH
318
357
2.07
1
L
L
O
O
HOH
HOH
601
614
2.07
1
L
L
O
O
HOH
HOH
595
602
2.09
1
L
L
O
O
THR
HOH
201
573
2.10
1
H
H
O
O
HOH
HOH
321
350
2.11
1
L
L
O
O
HOH
HOH
617
619
2.17
1
L
L
ND1
O
HIS
HOH
8
599
2.18
1
L
L
O
O
HOH
HOH
516
535
2.18
1
L
L
O
O
HOH
HOH
547
552
2.19
1
H
L
O
O
HOH
HOH
356
485
1.75
1_555
2_555
1
H
ASP
144
60.02
61.61
1
H
PHE
146
-173.55
135.16
1
L
ASP
51
75.58
-49.17
1
L
ASN
52
-148.96
22.78
1
L
ASP
60
-69.27
4.58
1
L
SER
94
80.31
-26.95
1
L
ASP
151
56.05
-105.84
1
L
PRO
208
-62.11
90.88
0.2108
0.1854
0.1866
1.694
24.806
2654
59149
53364
4.97
90.22
0.18
1
1.35
MOLECULAR REPLACEMENT
25.29
0.90
1.11
PDB ENTRIES 3H0T, 3UJJ
ML
FLAT BULK SOLVENT MODEL
1.694
24.806
403
3833
24
0
3406
0.007
3534
1.105
4813
14.758
1265
0.077
539
0.005
604
0.3461
0.2612
1.7250
85
1564
53.00
0.2445
0.2524
1.7582
92
1795
61.00
0.3347
0.2494
1.7940
112
2080
71.00
0.2958
0.2373
1.8330
127
2327
79.00
0.2469
0.2376
1.8757
129
2507
85.00
0.2543
0.2420
1.9225
113
2599
88.00
0.2852
0.2292
1.9745
154
2763
94.00
0.2405
0.2090
2.0326
147
2868
97.00
0.2206
0.1972
2.0981
151
2881
97.00
0.2115
0.1932
2.1731
137
2896
98.00
0.2749
0.2087
2.2600
147
2868
98.00
0.2441
0.2159
2.3628
146
2933
99.00
0.2228
0.2014
2.4873
159
2937
99.00
0.2328
0.2045
2.6430
144
2932
99.00
0.2187
0.2036
2.8468
165
2963
99.00
0.2363
0.1967
3.1327
168
2919
100.00
0.2014
0.1787
3.5849
167
2963
100.00
0.1757
0.1485
4.5122
166
2961
100.00
0.1595
0.1537
24.8090
145
2954
97.00
1.694
50.0
4HPO
59036
53546
1.0
1.0
1
90.7
0.387
1.694
1.73
1.88
1
2.2
56.1
data collection
SERGUI
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of RV144-elicited antibody CH58 in complex with V2 peptide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
H
ARG
28
A
ARG
28
HELX_P
H
TYR
32
A
TYR
32
5
1
5
H
LYS
73
A
LYS
74
HELX_P
H
ILE
75
A
ILE
76
5
2
3
H
LYS
83
A
LYS
87
HELX_P
H
THR
87
A
THR
91
5
3
5
H
SER
156
A
SER
169
HELX_P
H
ALA
158
A
ALA
171
5
4
3
H
PRO
185
A
PRO
198
HELX_P
H
LEU
189
A
LEU
202
5
5
5
H
LYS
201
A
LYS
214
HELX_P
H
ASN
204
A
ASN
217
5
6
4
L
SER
27
B
SER
28
HELX_P
L
ASP
31
B
ASP
32
5
7
5
B
L
SER
66
B
SER
69
HELX_P
L
SER
68
B
SER
71
5
8
3
B
L
LYS
79
B
LYS
82
HELX_P
L
GLU
83
B
GLU
86
5
9
5
L
SER
121
B
SER
125
HELX_P
L
ALA
127
B
ALA
131
1
10
7
L
THR
181
B
THR
185
HELX_P
L
HIS
188
B
HIS
192
1
11
8
P
LYS
168
C
LYS
5
HELX_P
P
TYR
177
C
TYR
14
1
12
10
disulf
2.034
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
96
1_555
disulf
2.043
H
CYS
140
A
SG
CYS
153
1_555
H
CYS
196
A
SG
CYS
209
1_555
disulf
2.067
L
CYS
23
B
SG
CYS
22
1_555
L
CYS
88
B
SG
CYS
91
1_555
disulf
2.038
L
CYS
134
B
SG
CYS
138
1_555
L
CYS
193
B
SG
CYS
197
1_555
covale
1.437
one
N-Glycosylation
L
ASN
93
B
ND2
ASN
96
1_555
A
NAG
1
D
C1
NAG
1_555
covale
1.249
both
A
NAG
1
D
O6
NAG
1_555
A
FUC
2
D
C1
FUC
1_555
Immune System/Viral Protein
Immunoglobulin, Immune System-Viral Protein complex
H
PHE
146
A
PHE
159
1
H
PRO
147
A
PRO
160
-4.32
H
GLU
148
A
GLU
161
1
H
PRO
149
A
PRO
162
-3.31
L
TYR
140
B
TYR
144
1
L
PRO
141
B
PRO
145
-3.49
Q9WLG7_9HIV1
UNP
3
160
Q9WLG7
ELRDKKQKVHALFYKLDIV
4HPO
PDB
1
4HPO
EVQLVQSGAEVKKPGESLKISCKGSGYRFTSYWIVWVRQMPGKGLEWMGIIYPGDFDTKYSPSFQGQVTISADKSISTAY
LQWSSLKASDTAMYYCARLGGRYYHDSSGYYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
4HPO
PDB
2
4HPO
NFMLTQPHSVSESPGKTVTISCTRSSGSVASDYVQWYQQRPGSAPTTVVYEDNQRPSGVPDRFSGSIDSSSNSASLTISG
LKTEDEADYYCQSYDNSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK
AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
160
178
4HPO
164
182
Q9WLG7
P
1
1
19
1
218
4HPO
1
218
4HPO
H
2
1
231
1
212
4HPO
1
212
4HPO
L
3
1
216
4
6
4
4
4
3
4
5
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
GLN
6
A
GLN
6
H
LEU
18
A
LEU
18
H
SER
25
A
SER
25
H
THR
77
A
THR
78
H
TRP
82
A
TRP
83
H
THR
68
A
THR
69
H
ASP
72
A
ASP
73
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
120
H
VAL
111
A
VAL
124
H
ALA
88
A
ALA
92
H
ARG
98
A
ARG
102
H
ILE
34
A
ILE
34
H
GLN
39
A
GLN
39
H
LEU
45
A
LEU
45
H
ILE
51
A
ILE
51
H
THR
57
A
THR
58
H
TYR
59
A
TYR
60
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
120
H
VAL
111
A
VAL
124
H
ALA
88
A
ALA
92
H
ARG
98
A
ARG
102
H
TYR
100
A
TYR
110
H
TRP
103
A
TRP
116
F
H
SER
120
A
SER
133
H
LEU
124
A
LEU
137
H
ALA
136
A
ALA
149
H
TYR
145
A
TYR
158
H
TYR
176
A
TYR
189
H
VAL
184
A
VAL
197
H
VAL
163
A
VAL
176
H
THR
165
A
THR
178
H
SER
120
A
SER
133
H
LEU
124
A
LEU
137
H
ALA
136
A
ALA
149
H
TYR
145
A
TYR
158
H
TYR
176
A
TYR
189
H
VAL
184
A
VAL
197
H
VAL
169
A
VAL
182
H
LEU
170
A
LEU
183
H
THR
151
A
THR
164
H
TRP
154
A
TRP
167
H
ILE
195
A
ILE
208
H
HIS
200
A
HIS
213
H
THR
205
A
THR
218
H
ARG
210
A
ARG
223
L
LEU
4
B
LEU
4
L
THR
5
B
THR
5
L
VAL
19
B
VAL
18
L
ARG
25
B
ARG
24
L
SER
70
B
SER
73
L
ILE
75
B
ILE
78
L
PHE
62
B
PHE
63
L
ASP
66
B
ASP
68
A
L
SER
9
B
SER
9
L
GLU
13
B
GLU
12
L
THR
102
B
THR
105
L
VAL
106
B
VAL
109
L
ALA
84
B
ALA
87
L
ASP
92
B
ASP
95
L
GLN
34
B
GLN
35
L
GLN
38
B
GLN
39
L
THR
45
B
THR
46
L
VAL
48
B
VAL
49
L
SER
9
B
SER
9
L
GLU
13
B
GLU
12
L
THR
102
B
THR
105
L
VAL
106
B
VAL
109
L
ALA
84
B
ALA
87
L
ASP
92
B
ASP
95
L
SER
95
B
SER
98
L
PHE
98
B
PHE
101
L
SER
114
B
SER
118
L
PHE
118
B
PHE
122
L
ALA
130
B
ALA
134
L
PHE
139
B
PHE
143
L
TYR
172
B
TYR
176
L
LEU
180
B
LEU
184
L
VAL
159
B
VAL
163
L
THR
161
B
THR
165
L
SER
114
B
SER
118
L
PHE
118
B
PHE
122
L
ALA
130
B
ALA
134
L
PHE
139
B
PHE
143
L
TYR
172
B
TYR
176
L
LEU
180
B
LEU
184
L
SER
165
B
SER
169
L
LYS
166
B
LYS
170
L
SER
153
B
SER
157
L
VAL
155
B
VAL
159
L
THR
145
B
THR
149
L
ALA
150
B
ALA
154
L
TYR
191
B
TYR
195
L
HIS
197
B
HIS
201
L
SER
200
B
SER
204
L
VAL
206
B
VAL
210
5
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