0.018218
0.010518
0.000000
0.000000
0.021036
0.000000
0.000000
0.000000
0.006516
0.00000
0.00000
0.00000
Adhikary, S.
Eichman, B.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
54.891
54.891
153.457
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
N
C
N
8
R
C
N
9
N
O
N
10
N
C
N
11
S
C
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
N
N
45
N
C
N
46
N
N
N
47
N
N
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
O
N
71
N
N
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
R
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
S
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
Y
123
N
N
Y
124
N
C
Y
125
N
N
Y
126
N
C
Y
127
N
C
N
128
N
N
Y
129
N
N
Y
130
N
C
Y
131
N
N
Y
132
N
C
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
N
C
N
158
R
C
N
159
N
N
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
Y
193
N
N
Y
194
N
C
Y
195
N
N
Y
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
C
N
201
N
N
N
202
N
N
Y
203
N
C
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
O
N
219
N
P
N
220
N
O
N
221
N
O
N
222
N
O
N
223
N
C
N
224
R
C
N
225
N
O
N
226
S
C
N
227
N
O
N
228
N
C
N
229
R
C
N
230
N
N
N
231
N
C
N
232
N
O
N
233
N
N
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
N
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
S
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
N
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
S
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
S
C
N
475
N
C
N
476
N
O
N
477
N
C
N
478
N
O
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
N
N
488
S
C
N
489
N
C
N
490
N
O
N
491
R
C
N
492
N
O
N
493
N
C
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
N
N
505
S
C
N
506
N
C
N
507
N
O
N
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
N
Y
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
N
518
N
O
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
N
N
532
S
C
N
533
N
C
N
534
N
O
N
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
Y
541
N
C
N
542
N
O
N
543
N
O
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
N
N
556
S
C
N
557
N
C
N
558
N
O
N
559
N
C
N
560
N
C
N
561
N
C
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
Y
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
sing
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
doub
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
Y
505
N
doub
Y
506
N
sing
Y
507
N
sing
N
508
N
sing
Y
509
N
doub
Y
510
N
sing
Y
511
N
sing
N
512
N
sing
Y
513
N
sing
Y
514
N
doub
N
515
N
sing
Y
516
N
doub
N
517
N
sing
Y
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
doub
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
Y
533
N
doub
Y
534
N
sing
Y
535
N
sing
N
536
N
sing
Y
537
N
doub
N
538
N
sing
Y
539
N
doub
N
540
N
sing
Y
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
NE
Dna Repair
1568-7864
12
196
204
10.1016/j.dnarep.2012.12.001
23273506
Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe.
2013
10.2210/pdb4hsb/pdb
pdb_00004hsb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
IMAGE PLATE
2011-06-23
MAR scanner 300 mm plate
C(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97857
1.0
21-ID-G
APS
0.97857
SYNCHROTRON
APS BEAMLINE 21-ID-G
24627.188
Probable DNA-3-methyladenine glycosylase 2
3.2.2.21
1
man
polymer
3290.137
DNA (5'-D(P*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3')
1
syn
polymer
3285.148
DNA (5'-D(P*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*C)-3')
1
syn
polymer
106.120
DI(HYDROXYETHYL)ETHER
2
syn
non-polymer
18.015
water
114
nat
water
3-methyladenine DNA glycosidase 2, 3MEA DNA glycosylase 2
no
no
GPGSMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEF
PTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLD
IMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLHRKGQ
GPGSMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEF
PTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLD
IMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLHRKGQ
A
polypeptide(L)
no
yes
(DG)(DG)(DA)(DC)(DT)(3DR)(DA)(DC)(DG)(DG)(DG)
GGACTNACGGG
B
polydeoxyribonucleotide
no
no
(DC)(DC)(DC)(DG)(DT)(DT)(DA)(DG)(DT)(DC)(DC)
CCCGTTAGTCC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fission yeast
sample
SPBC23G7.11
284812
Schizosaccharomyces pombe 972h-
511693
Escherichia coli
BL21
pBG100
1
2.14
42.49
VAPOR DIFFUSION, SITTING DROP
7.5
50 mM HEPES,
200 mM KCl,
25 mM MgSO4 , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294.15K
294.15
14.631
1
B
2
C
12
-36.830
B_DG2:DC12_C
1
-10.744
0.963
1.077
0.075
-12.425
B
3
C
11
-19.246
B_DG3:DC11_C
2
-30.397
-2.782
0.440
-0.851
-19.907
B
4
C
9
-43.740
B_DA4:DG9_C
3
-23.642
-0.922
-2.230
1.901
8.669
1
20
B
6
C
8
-1.185
B_DT6:DA8_C
4
-20.022
0.994
-0.293
-0.461
-16.598
1
20
B
8
C
6
2.076
B_DA8:DT6_C
5
-3.446
0.226
0.397
-0.220
-2.827
1
19
B
9
C
5
-3.281
B_DC9:DG5_C
6
4.069
0.130
0.054
-0.395
13.010
1
19
B
10
C
4
-1.516
B_DG10:DC4_C
7
0.179
-0.350
-0.167
-0.259
7.017
1
19
B
11
C
3
-0.733
B_DG11:DC3_C
8
-19.115
-0.396
-0.140
-0.117
4.187
19.348
B
B
2
3
-2.407
C
C
12
11
3.672
-0.753
2.014
-1.282
BB_DG2DG3:DC11DC12_CC
1
11.812
-37.772
15.332
-3.309
1.918
4.779
68.926
B
B
3
4
-12.879
C
C
11
9
5.174
-14.485
0.152
1.563
BB_DG3DA4:DG9DC11_CC
2
-4.185
3.721
67.457
2.203
-0.372
4.511
47.183
B
B
4
6
-5.731
C
C
9
8
4.198
-4.522
1.652
-0.423
BB_DA4DT6:DA8DG9_CC
3
13.667
-17.321
45.053
-0.023
-0.538
3.237
29.318
B
B
8
9
-9.047
C
C
6
5
3.283
-4.556
0.293
-0.185
BB_DA8DC9:DG5DT6_CC
4
-2.517
4.999
28.863
0.621
-1.125
3.259
32.240
B
B
9
10
3.414
C
C
5
4
3.233
1.893
0.385
0.209
BB_DC9DG10:DC4DG5_CC
5
2.426
-4.376
32.097
0.041
-0.263
3.304
35.957
B
B
10
11
7.344
C
C
4
3
3.419
4.519
-0.098
-0.732
BB_DG10DG11:DC3DC4_CC
6
-2.405
3.908
35.602
-1.852
-0.195
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Other
Data collection
Database references
Derived calculations
1
0
2013-01-23
1
1
2013-04-10
1
2
2014-01-01
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Related DNA glycosylase from S. pombe (Mag1)
RCSB
Y
RCSB
2012-10-29
REL
REL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
PEG
2
4
PEG
PEG
301
A
PEG
3
4
PEG
PEG
302
A
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
4
5
HOH
HOH
403
A
HOH
5
5
HOH
HOH
404
A
HOH
6
5
HOH
HOH
405
A
HOH
7
5
HOH
HOH
406
A
HOH
8
5
HOH
HOH
407
A
HOH
9
5
HOH
HOH
408
A
HOH
10
5
HOH
HOH
409
A
HOH
12
5
HOH
HOH
410
A
HOH
13
5
HOH
HOH
411
A
HOH
14
5
HOH
HOH
412
A
HOH
15
5
HOH
HOH
413
A
HOH
16
5
HOH
HOH
414
A
HOH
17
5
HOH
HOH
415
A
HOH
18
5
HOH
HOH
416
A
HOH
20
5
HOH
HOH
417
A
HOH
21
5
HOH
HOH
418
A
HOH
22
5
HOH
HOH
419
A
HOH
23
5
HOH
HOH
420
A
HOH
24
5
HOH
HOH
421
A
HOH
25
5
HOH
HOH
422
A
HOH
27
5
HOH
HOH
423
A
HOH
28
5
HOH
HOH
424
A
HOH
29
5
HOH
HOH
425
A
HOH
30
5
HOH
HOH
426
A
HOH
33
5
HOH
HOH
427
A
HOH
34
5
HOH
HOH
428
A
HOH
35
5
HOH
HOH
429
A
HOH
36
5
HOH
HOH
430
A
HOH
37
5
HOH
HOH
431
A
HOH
38
5
HOH
HOH
432
A
HOH
39
5
HOH
HOH
433
A
HOH
41
5
HOH
HOH
434
A
HOH
42
5
HOH
HOH
435
A
HOH
43
5
HOH
HOH
436
A
HOH
44
5
HOH
HOH
437
A
HOH
46
5
HOH
HOH
438
A
HOH
47
5
HOH
HOH
439
A
HOH
49
5
HOH
HOH
440
A
HOH
50
5
HOH
HOH
441
A
HOH
51
5
HOH
HOH
442
A
HOH
52
5
HOH
HOH
443
A
HOH
53
5
HOH
HOH
444
A
HOH
54
5
HOH
HOH
445
A
HOH
55
5
HOH
HOH
446
A
HOH
56
5
HOH
HOH
447
A
HOH
57
5
HOH
HOH
448
A
HOH
58
5
HOH
HOH
449
A
HOH
59
5
HOH
HOH
450
A
HOH
61
5
HOH
HOH
451
A
HOH
62
5
HOH
HOH
452
A
HOH
63
5
HOH
HOH
453
A
HOH
64
5
HOH
HOH
454
A
HOH
65
5
HOH
HOH
455
A
HOH
66
5
HOH
HOH
456
A
HOH
68
5
HOH
HOH
457
A
HOH
69
5
HOH
HOH
458
A
HOH
70
5
HOH
HOH
459
A
HOH
72
5
HOH
HOH
460
A
HOH
73
5
HOH
HOH
461
A
HOH
75
5
HOH
HOH
462
A
HOH
77
5
HOH
HOH
463
A
HOH
78
5
HOH
HOH
464
A
HOH
79
5
HOH
HOH
465
A
HOH
80
5
HOH
HOH
466
A
HOH
81
5
HOH
HOH
467
A
HOH
82
5
HOH
HOH
468
A
HOH
83
5
HOH
HOH
469
A
HOH
86
5
HOH
HOH
470
A
HOH
87
5
HOH
HOH
471
A
HOH
88
5
HOH
HOH
472
A
HOH
89
5
HOH
HOH
473
A
HOH
90
5
HOH
HOH
474
A
HOH
91
5
HOH
HOH
475
A
HOH
92
5
HOH
HOH
476
A
HOH
93
5
HOH
HOH
477
A
HOH
94
5
HOH
HOH
478
A
HOH
95
5
HOH
HOH
479
A
HOH
96
5
HOH
HOH
480
A
HOH
97
5
HOH
HOH
481
A
HOH
98
5
HOH
HOH
482
A
HOH
99
5
HOH
HOH
483
A
HOH
100
5
HOH
HOH
484
A
HOH
101
5
HOH
HOH
485
A
HOH
102
5
HOH
HOH
486
A
HOH
103
5
HOH
HOH
487
A
HOH
104
5
HOH
HOH
488
A
HOH
105
5
HOH
HOH
489
A
HOH
106
5
HOH
HOH
490
A
HOH
107
5
HOH
HOH
491
A
HOH
108
5
HOH
HOH
492
A
HOH
109
5
HOH
HOH
493
A
HOH
110
5
HOH
HOH
494
A
HOH
111
5
HOH
HOH
495
A
HOH
112
5
HOH
HOH
496
A
HOH
113
5
HOH
HOH
497
A
HOH
114
5
HOH
HOH
498
A
HOH
118
5
HOH
HOH
499
A
HOH
119
5
HOH
HOH
500
A
HOH
120
5
HOH
HOH
501
A
HOH
121
5
HOH
HOH
502
A
HOH
123
5
HOH
HOH
503
A
HOH
124
5
HOH
HOH
504
A
HOH
11
5
HOH
HOH
101
B
HOH
26
5
HOH
HOH
102
B
HOH
32
5
HOH
HOH
103
B
HOH
40
5
HOH
HOH
104
B
HOH
76
5
HOH
HOH
105
B
HOH
45
5
HOH
HOH
101
C
HOH
67
5
HOH
HOH
102
C
HOH
71
5
HOH
HOH
103
C
HOH
74
5
HOH
HOH
104
C
HOH
85
5
HOH
HOH
105
C
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
n
6
2
A
n
7
3
A
n
8
4
A
SER
5
n
9
SER
5
A
ASP
6
n
10
ASP
6
A
TYR
7
n
11
TYR
7
A
LYS
8
n
12
LYS
8
A
ARG
9
n
13
ARG
9
A
ALA
10
n
14
ALA
10
A
GLU
11
n
15
GLU
11
A
LYS
12
n
16
LYS
12
A
HIS
13
n
17
HIS
13
A
LEU
14
n
18
LEU
14
A
SER
15
n
19
SER
15
A
SER
16
n
20
SER
16
A
ILE
17
n
21
ILE
17
A
ASP
18
n
22
ASP
18
A
ASN
19
n
23
ASN
19
A
LYS
20
n
24
LYS
20
A
TRP
21
n
25
TRP
21
A
SER
22
n
26
SER
22
A
SER
23
n
27
SER
23
A
LEU
24
n
28
LEU
24
A
VAL
25
n
29
VAL
25
A
LYS
26
n
30
LYS
26
A
LYS
27
n
31
LYS
27
A
VAL
28
n
32
VAL
28
A
GLY
29
n
33
GLY
29
A
PRO
30
n
34
PRO
30
A
CYS
31
n
35
CYS
31
A
THR
32
n
36
THR
32
A
LEU
33
n
37
LEU
33
A
THR
34
n
38
THR
34
A
PRO
35
n
39
PRO
35
A
HIS
36
n
40
HIS
36
A
PRO
37
n
41
PRO
37
A
GLU
38
n
42
GLU
38
A
HIS
39
n
43
HIS
39
A
ALA
40
n
44
ALA
40
A
PRO
41
n
45
PRO
41
A
TYR
42
n
46
TYR
42
A
GLU
43
n
47
GLU
43
A
GLY
44
n
48
GLY
44
A
ILE
45
n
49
ILE
45
A
ILE
46
n
50
ILE
46
A
ARG
47
n
51
ARG
47
A
ALA
48
n
52
ALA
48
A
ILE
49
n
53
ILE
49
A
THR
50
n
54
THR
50
A
SER
51
n
55
SER
51
A
GLN
52
n
56
GLN
52
A
LYS
53
n
57
LYS
53
A
LEU
54
n
58
LEU
54
A
SER
55
n
59
SER
55
A
ASP
56
n
60
ASP
56
A
ALA
57
n
61
ALA
57
A
ALA
58
n
62
ALA
58
A
THR
59
n
63
THR
59
A
ASN
60
n
64
ASN
60
A
SER
61
n
65
SER
61
A
ILE
62
n
66
ILE
62
A
ILE
63
n
67
ILE
63
A
ASN
64
n
68
ASN
64
A
LYS
65
n
69
LYS
65
A
PHE
66
n
70
PHE
66
A
CYS
67
n
71
CYS
67
A
THR
68
n
72
THR
68
A
GLN
69
n
73
GLN
69
A
CYS
70
n
74
CYS
70
A
SER
71
n
75
SER
71
A
ASP
72
n
76
ASP
72
A
ASN
73
n
77
ASN
73
A
ASP
74
n
78
ASP
74
A
GLU
75
n
79
GLU
75
A
PHE
76
n
80
PHE
76
A
PRO
77
n
81
PRO
77
A
THR
78
n
82
THR
78
A
PRO
79
n
83
PRO
79
A
LYS
80
n
84
LYS
80
A
GLN
81
n
85
GLN
81
A
ILE
82
n
86
ILE
82
A
MET
83
n
87
MET
83
A
GLU
84
n
88
GLU
84
A
THR
85
n
89
THR
85
A
ASP
86
n
90
ASP
86
A
VAL
87
n
91
VAL
87
A
GLU
88
n
92
GLU
88
A
THR
89
n
93
THR
89
A
LEU
90
n
94
LEU
90
A
HIS
91
n
95
HIS
91
A
GLU
92
n
96
GLU
92
A
CYS
93
n
97
CYS
93
A
GLY
94
n
98
GLY
94
A
PHE
95
n
99
PHE
95
A
SER
96
n
100
SER
96
A
LYS
97
n
101
LYS
97
A
LEU
98
n
102
LEU
98
A
LYS
99
n
103
LYS
99
A
SER
100
n
104
SER
100
A
GLN
101
n
105
GLN
101
A
GLU
102
n
106
GLU
102
A
ILE
103
n
107
ILE
103
A
HIS
104
n
108
HIS
104
A
ILE
105
n
109
ILE
105
A
VAL
106
n
110
VAL
106
A
ALA
107
n
111
ALA
107
A
GLU
108
n
112
GLU
108
A
ALA
109
n
113
ALA
109
A
ALA
110
n
114
ALA
110
A
LEU
111
n
115
LEU
111
A
ASN
112
n
116
ASN
112
A
LYS
113
n
117
LYS
113
A
GLN
114
n
118
GLN
114
A
ILE
115
n
119
ILE
115
A
PRO
116
n
120
PRO
116
A
SER
117
n
121
SER
117
A
LYS
118
n
122
LYS
118
A
SER
119
n
123
SER
119
A
GLU
120
n
124
GLU
120
A
ILE
121
n
125
ILE
121
A
GLU
122
n
126
GLU
122
A
LYS
123
n
127
LYS
123
A
MET
124
n
128
MET
124
A
SER
125
n
129
SER
125
A
GLU
126
n
130
GLU
126
A
GLU
127
n
131
GLU
127
A
GLU
128
n
132
GLU
128
A
LEU
129
n
133
LEU
129
A
MET
130
n
134
MET
130
A
GLU
131
n
135
GLU
131
A
SER
132
n
136
SER
132
A
LEU
133
n
137
LEU
133
A
SER
134
n
138
SER
134
A
LYS
135
n
139
LYS
135
A
ILE
136
n
140
ILE
136
A
LYS
137
n
141
LYS
137
A
GLY
138
n
142
GLY
138
A
VAL
139
n
143
VAL
139
A
LYS
140
n
144
LYS
140
A
ARG
141
n
145
ARG
141
A
TRP
142
n
146
TRP
142
A
THR
143
n
147
THR
143
A
ILE
144
n
148
ILE
144
A
GLU
145
n
149
GLU
145
A
MET
146
n
150
MET
146
A
TYR
147
n
151
TYR
147
A
SER
148
n
152
SER
148
A
ILE
149
n
153
ILE
149
A
PHE
150
n
154
PHE
150
A
THR
151
n
155
THR
151
A
LEU
152
n
156
LEU
152
A
GLY
153
n
157
GLY
153
A
ARG
154
n
158
ARG
154
A
LEU
155
n
159
LEU
155
A
ASP
156
n
160
ASP
156
A
ILE
157
n
161
ILE
157
A
MET
158
n
162
MET
158
A
PRO
159
n
163
PRO
159
A
ALA
160
n
164
ALA
160
A
ASP
161
n
165
ASP
161
A
ASP
162
n
166
ASP
162
A
SER
163
n
167
SER
163
A
THR
164
n
168
THR
164
A
LEU
165
n
169
LEU
165
A
LYS
166
n
170
LYS
166
A
ASN
167
n
171
ASN
167
A
GLU
168
n
172
GLU
168
A
ALA
169
n
173
ALA
169
A
LYS
170
n
174
LYS
170
A
GLU
171
n
175
GLU
171
A
PHE
172
n
176
PHE
172
A
PHE
173
n
177
PHE
173
A
GLY
174
n
178
GLY
174
A
LEU
175
n
179
LEU
175
A
SER
176
n
180
SER
176
A
SER
177
n
181
SER
177
A
LYS
178
n
182
LYS
178
A
PRO
179
n
183
PRO
179
A
GLN
180
n
184
GLN
180
A
THR
181
n
185
THR
181
A
GLU
182
n
186
GLU
182
A
GLU
183
n
187
GLU
183
A
VAL
184
n
188
VAL
184
A
GLU
185
n
189
GLU
185
A
LYS
186
n
190
LYS
186
A
LEU
187
n
191
LEU
187
A
THR
188
n
192
THR
188
A
LYS
189
n
193
LYS
189
A
PRO
190
n
194
PRO
190
A
CYS
191
n
195
CYS
191
A
LYS
192
n
196
LYS
192
A
PRO
193
n
197
PRO
193
A
TYR
194
n
198
TYR
194
A
ARG
195
n
199
ARG
195
A
THR
196
n
200
THR
196
A
ILE
197
n
201
ILE
197
A
ALA
198
n
202
ALA
198
A
ALA
199
n
203
ALA
199
A
TRP
200
n
204
TRP
200
A
TYR
201
n
205
TYR
201
A
LEU
202
n
206
LEU
202
A
TRP
203
n
207
TRP
203
A
GLN
204
n
208
GLN
204
A
ILE
205
n
209
ILE
205
A
PRO
206
n
210
PRO
206
A
LYS
207
n
211
LYS
207
A
LEU
208
n
212
LEU
208
A
HIS
209
n
213
HIS
209
A
n
214
210
A
n
215
211
A
n
216
212
A
n
217
213
A
DG
2
n
1
DG
2
B
DG
3
n
2
DG
3
B
DA
4
n
3
DA
4
B
DC
5
n
4
DC
5
B
DT
6
n
5
DT
6
B
3DR
7
n
6
3DR
7
B
DA
8
n
7
DA
8
B
DC
9
n
8
DC
9
B
DG
10
n
9
DG
10
B
DG
11
n
10
DG
11
B
DG
12
n
11
DG
12
B
DC
2
n
1
DC
2
C
DC
3
n
2
DC
3
C
DC
4
n
3
DC
4
C
DG
5
n
4
DG
5
C
DT
6
n
5
DT
6
C
DT
7
n
6
DT
7
C
DA
8
n
7
DA
8
C
DG
9
n
8
DG
9
C
DT
10
n
9
DT
10
C
DC
11
n
10
DC
11
C
DC
12
n
11
DC
12
C
1.6330
-0.2170
-0.3909
2.1868
-0.6426
4.4852
-0.0300
-0.2861
0.1622
0.5433
-0.0014
0.2906
-0.3427
-0.1386
0.0230
0.2258
0.0041
0.0447
0.1609
-0.0642
0.2055
refined
13.0583
-2.1590
2.5761
X-RAY DIFFRACTION
2.7783
0.0839
-1.6629
2.4775
-0.0136
2.7235
-0.0416
0.1277
0.0451
-0.2890
-0.0601
-0.1812
0.0111
0.2366
0.0836
0.1514
0.0001
0.0085
0.1729
0.0300
0.1336
refined
22.4815
-6.3800
-20.8299
X-RAY DIFFRACTION
2.3008
0.6041
-0.6487
6.2949
-0.0533
2.2138
-0.0516
-0.1767
-0.2189
0.2474
0.0358
0.2155
0.2333
-0.1638
0.0105
0.1701
0.0058
0.0578
0.1482
0.0215
0.1450
refined
12.5378
-14.7451
0.0779
X-RAY DIFFRACTION
6.5067
-1.5440
3.5618
1.5273
-0.2601
2.2381
0.8764
0.4305
-1.3741
0.8626
-0.3237
-0.4218
1.2869
1.1163
-0.5264
1.8357
0.2620
-0.3378
2.3432
0.5731
1.0913
refined
35.6180
-26.3944
-6.7014
X-RAY DIFFRACTION
8.5443
0.1119
0.2163
3.2842
1.8919
2.6541
-0.0568
0.0440
-1.4563
0.2553
0.0298
-0.4110
1.5532
0.6341
-0.1509
0.6562
0.1773
0.1453
0.3112
0.0613
0.4223
refined
20.9359
-22.8054
-21.4294
X-RAY DIFFRACTION
2.8613
1.4545
4.6043
2.0242
2.4982
8.6718
0.3755
-0.5875
-1.1903
0.7383
-0.4069
0.6563
1.4350
-0.6623
0.0888
0.8210
0.2136
0.3136
0.6904
0.2176
0.8234
refined
22.7932
-29.2648
-18.5910
X-RAY DIFFRACTION
2.6120
2.0409
3.0183
4.7810
-1.0795
7.2248
-0.5223
-1.8049
-0.2799
2.0264
-0.0772
-0.8892
-0.5679
0.0859
0.4717
1.0436
0.5071
-0.1862
1.4312
0.3624
0.6806
refined
34.8507
-17.5864
-7.3516
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 5 through 40 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 41 through 162 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 163 through 209 )
X-RAY DIFFRACTION
4
chain 'B' and (resid 2 through 6 )
X-RAY DIFFRACTION
5
chain 'B' and (resid 7 through 12 )
X-RAY DIFFRACTION
6
chain 'C' and (resid 2 through 6 )
X-RAY DIFFRACTION
7
chain 'C' and (resid 7 through 12 )
author_and_software_defined_assembly
PISA
3
trimeric
3350
-15
13290
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
LYS
8
A
CG
LYS
12
1
Y
1
A
CD
LYS
8
A
CD
LYS
12
1
Y
1
A
CE
LYS
8
A
CE
LYS
12
1
Y
1
A
NZ
LYS
8
A
NZ
LYS
12
1
Y
1
A
CG
ASN
19
A
CG
ASN
23
1
Y
1
A
OD1
ASN
19
A
OD1
ASN
23
1
Y
1
A
ND2
ASN
19
A
ND2
ASN
23
1
Y
1
A
CG
LYS
53
A
CG
LYS
57
1
Y
1
A
CD
LYS
53
A
CD
LYS
57
1
Y
1
A
CE
LYS
53
A
CE
LYS
57
1
Y
1
A
NZ
LYS
53
A
NZ
LYS
57
1
Y
1
A
CG
ASP
56
A
CG
ASP
60
1
Y
1
A
OD1
ASP
56
A
OD1
ASP
60
1
Y
1
A
OD2
ASP
56
A
OD2
ASP
60
1
Y
1
A
CD
GLU
75
A
CD
GLU
79
1
Y
1
A
OE1
GLU
75
A
OE1
GLU
79
1
Y
1
A
OE2
GLU
75
A
OE2
GLU
79
1
Y
1
A
CG
LYS
80
A
CG
LYS
84
1
Y
1
A
CD
LYS
80
A
CD
LYS
84
1
Y
1
A
CE
LYS
80
A
CE
LYS
84
1
Y
1
A
NZ
LYS
80
A
NZ
LYS
84
1
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
PRO
-2
A
PRO
2
1
Y
1
A
GLY
-1
A
GLY
3
1
Y
1
A
SER
0
A
SER
4
1
Y
1
A
MET
1
A
MET
5
1
Y
1
A
SER
2
A
SER
6
1
Y
1
A
LYS
3
A
LYS
7
1
Y
1
A
ASP
4
A
ASP
8
1
Y
1
A
ARG
210
A
ARG
214
1
Y
1
A
LYS
211
A
LYS
215
1
Y
1
A
GLY
212
A
GLY
216
1
Y
1
A
GLN
213
A
GLN
217
1
Y
1
3.34
0.30
108.30
111.64
B
B
B
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-2.88
0.40
104.50
101.62
B
B
B
O4'
C4'
C3'
DG
DG
DG
3
3
3
N
1
A
LYS
140
-127.43
-158.58
1
A
THR
151
-101.25
-64.10
1
A
PRO
193
-99.62
30.31
0.2345
0.1916
0.1937
1.9
29.855
1121
22187
22187
5.05
99.77
0.16
1
1.38
MOLECULAR REPLACEMENT
21.75
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.9
29.855
114
2186
14
441
1617
0.007
2157
1.117
3000
21.017
848
0.070
338
0.005
303
0.2318
0.1960
1.9772
140
2542
99.00
0.2340
0.1795
2.0814
156
2569
100.00
0.2223
0.1679
2.2117
131
2606
100.00
0.2288
0.1714
2.3825
138
2618
100.00
0.2200
0.1760
2.6221
132
2614
100.00
0.2488
0.1897
3.0012
159
2610
100.00
0.2491
0.1954
3.7800
133
2683
100.00
0.2284
0.2079
29.8584
132
2824
99.00
1.9
51.152
4HSB
22239
22239
0
0
0.070
1
30.30
10.6
99.7
1.90
1.97
1
98.8
data collection
MD2
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
HKL-2000
data scaling
HKL-2000
S. pombe 3-methyladenine DNA glycosylase-like protein Mag2 bound to damaged DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
SER
5
A
SER
9
HELX_P
A
SER
16
A
SER
20
1
1
12
A
ASP
18
A
ASP
22
HELX_P
A
GLY
29
A
GLY
33
1
2
12
A
ALA
40
A
ALA
44
HELX_P
A
GLN
52
A
GLN
56
1
3
13
A
SER
55
A
SER
59
HELX_P
A
SER
71
A
SER
75
1
4
17
A
THR
78
A
THR
82
HELX_P
A
GLU
84
A
GLU
88
1
5
7
A
ASP
86
A
ASP
90
HELX_P
A
GLU
92
A
GLU
96
1
6
7
A
SER
96
A
SER
100
HELX_P
A
ASN
112
A
ASN
116
1
7
17
A
SER
117
A
SER
121
HELX_P
A
GLU
122
A
GLU
126
1
8
6
A
SER
125
A
SER
129
HELX_P
A
SER
134
A
SER
138
1
9
10
A
LYS
140
A
LYS
144
HELX_P
A
THR
151
A
THR
155
1
10
12
A
ASP
162
A
ASP
166
HELX_P
A
PHE
173
A
PHE
177
1
11
12
A
GLN
180
A
GLN
184
HELX_P
A
THR
188
A
THR
192
1
12
9
A
LYS
189
A
LYS
193
HELX_P
A
LYS
192
A
LYS
196
5
13
4
A
TYR
194
A
TYR
198
HELX_P
A
GLN
204
A
GLN
208
1
14
11
A
ILE
205
A
ILE
209
HELX_P
A
HIS
209
A
HIS
213
5
15
5
covale
1.607
both
B
DT
6
B
O3'
DT
5
1_555
B
3DR
7
B
P
3DR
6
1_555
covale
1.604
both
B
3DR
7
B
O3'
3DR
6
1_555
B
DA
8
B
P
DA
7
1_555
hydrog
DG-DC PAIR
B
DG
2
B
N1
DG
1
1_555
C
DC
12
C
N3
DC
11
1_555
hydrog
DG-DC PAIR
B
DG
3
B
N1
DG
2
1_555
C
DC
11
C
O2
DC
10
1_555
hydrog
DA-DG MISPAIR
B
DA
4
B
N6
DA
3
1_555
C
DG
9
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DT
6
B
N3
DT
5
1_555
C
DA
8
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
6
B
O4
DT
5
1_555
C
DA
8
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N1
DA
7
1_555
C
DT
6
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N6
DA
7
1_555
C
DT
6
C
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
8
1_555
C
DG
5
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
8
1_555
C
DG
5
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
8
1_555
C
DG
5
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N1
DG
9
1_555
C
DC
4
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N2
DG
9
1_555
C
DC
4
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
10
B
O6
DG
9
1_555
C
DC
4
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N1
DG
10
1_555
C
DC
3
C
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N2
DG
10
1_555
C
DC
3
C
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
11
B
O6
DG
10
1_555
C
DC
3
C
N4
DC
2
1_555
Hydrolase/DNA
Helix-hairpin-Helix, Non-specific DNA-binding motif, Hydrolase-DNA complex
A
LYS
192
A
LYS
196
1
A
PRO
193
A
PRO
197
7.77
MAG2_SCHPO
UNP
1
1
O94468
MSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPK
QIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPA
DDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLHRKGQ
4HSB
PDB
2
4HSB
4HSB
PDB
3
4HSB
1
213
4HSB
1
213
O94468
A
1
5
217
2
12
4HSB
2
12
4HSB
B
2
1
11
2
12
4HSB
2
12
4HSB
C
3
1
11
1
expression tag
GLY
-3
4HSB
A
O94468
UNP
1
1
expression tag
PRO
-2
4HSB
A
O94468
UNP
2
1
expression tag
GLY
-1
4HSB
A
O94468
UNP
3
1
expression tag
SER
0
4HSB
A
O94468
UNP
4
BINDING SITE FOR RESIDUE PEG A 301
A
PEG
301
Software
1
BINDING SITE FOR RESIDUE PEG A 302
A
PEG
302
Software
3
A
PRO
193
A
PRO
197
1
1_555
A
LYS
20
A
LYS
24
3
1_555
A
LYS
27
A
LYS
31
3
1_555
A
LEU
208
A
LEU
212
3
1_555
154
P 32 2 1