0.011045 0.000000 0.000000 0.000000 0.011045 0.000000 0.000000 0.000000 0.007573 0.00000 0.00000 0.00000 RESIDUE PRO H 37 IS A CIS PROLINE. Tulinsky, A. Rydel, T.J. Bode, W. Huber, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 90.540 90.540 132.040 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 221 583 601 10.1016/0022-2836(91)80074-5 1920434 Refined structure of the hirudin-thrombin complex. 1991 US Science SCIEAS 0038 0036-8075 249 277 The Structure of a Complex of Recombinant Hirudin and Human Alpha-Thrombin 1990 UK Embo J. EMJODG 0897 0261-4189 8 3467 The Refined 1.9 Angstroms Crystal Structure of Human Alpha-Thrombin: Interaction with D-Phe-Pro-Arg Chloromethylketone and Significance of the Tyr-Pro-Pro-Trp Insertion Segment 1989 NAG H 400 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 4096.534 ALPHA-THROMBIN (SMALL SUBUNIT) 3.4.21.5 1 man polymer 29780.219 ALPHA-THROMBIN (LARGE SUBUNIT) 3.4.21.5 1 man polymer 6917.509 HIRUDIN VARIANT 2 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 262 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no no ITYTDCTESGQNLCLCEGSNVCGKGNKCILGSNGKGNQCVTGEGTPKPESHNNGDFEEIPEEYLQ ITYTDCTESGQNLCLCEGSNVCGKGNKCILGSNGKGNQCVTGEGTPKPESHNNGDFEEIPEEYLQ I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens medicinal leech Hirudo sample 6421 Hirudo medicinalis 3.32 62.90 pdbx_database_status struct_conf struct_conf_type chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Derived calculations Other Advisory Data collection Database references Derived calculations Structure summary 1 0 1994-01-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 1 4 2020-07-29 _pdbx_database_status.process_site _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_ref_seq_dif.details DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1993-06-25 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR HIRUDIN. NAG 400 4 NAG NAG 400 H HOH 424 5 HOH HOH 424 L HOH 436 5 HOH HOH 436 L HOH 437 5 HOH HOH 437 L HOH 447 5 HOH HOH 447 L HOH 457 5 HOH HOH 457 L HOH 488 5 HOH HOH 488 L HOH 501 5 HOH HOH 501 L HOH 535 5 HOH HOH 535 L HOH 537 5 HOH HOH 537 L HOH 567 5 HOH HOH 567 L HOH 602 5 HOH HOH 602 L HOH 603 5 HOH HOH 603 L HOH 614 5 HOH HOH 614 L HOH 632 5 HOH HOH 632 L HOH 684 5 HOH HOH 684 L HOH 700 5 HOH HOH 700 L HOH 707 5 HOH HOH 707 L HOH 721 5 HOH HOH 721 L HOH 402 5 HOH HOH 402 H HOH 403 5 HOH HOH 403 H HOH 404 5 HOH HOH 404 H HOH 405 5 HOH HOH 405 H HOH 406 5 HOH HOH 406 H HOH 407 5 HOH HOH 407 H HOH 408 5 HOH HOH 408 H HOH 411 5 HOH HOH 411 H HOH 414 5 HOH HOH 414 H HOH 415 5 HOH HOH 415 H HOH 417 5 HOH HOH 417 H HOH 418 5 HOH HOH 418 H HOH 419 5 HOH HOH 419 H HOH 420 5 HOH HOH 420 H HOH 421 5 HOH HOH 421 H HOH 422 5 HOH HOH 422 H HOH 423 5 HOH HOH 423 H HOH 425 5 HOH HOH 425 H HOH 426 5 HOH HOH 426 H HOH 428 5 HOH HOH 428 H HOH 429 5 HOH HOH 429 H HOH 430 5 HOH HOH 430 H HOH 431 5 HOH HOH 431 H HOH 432 5 HOH HOH 432 H HOH 433 5 HOH HOH 433 H HOH 438 5 HOH HOH 438 H HOH 439 5 HOH HOH 439 H HOH 441 5 HOH HOH 441 H HOH 442 5 HOH HOH 442 H HOH 443 5 HOH HOH 443 H HOH 444 5 HOH HOH 444 H HOH 445 5 HOH HOH 445 H HOH 449 5 HOH HOH 449 H HOH 452 5 HOH HOH 452 H HOH 460 5 HOH HOH 460 H HOH 461 5 HOH HOH 461 H HOH 462 5 HOH HOH 462 H HOH 463 5 HOH HOH 463 H HOH 464 5 HOH HOH 464 H HOH 468 5 HOH HOH 468 H HOH 470 5 HOH HOH 470 H HOH 471 5 HOH HOH 471 H HOH 473 5 HOH HOH 473 H HOH 474 5 HOH HOH 474 H HOH 475 5 HOH HOH 475 H HOH 476 5 HOH HOH 476 H HOH 477 5 HOH HOH 477 H HOH 479 5 HOH HOH 479 H HOH 480 5 HOH HOH 480 H HOH 482 5 HOH HOH 482 H HOH 486 5 HOH HOH 486 H HOH 489 5 HOH HOH 489 H HOH 491 5 HOH HOH 491 H HOH 492 5 HOH HOH 492 H HOH 494 5 HOH HOH 494 H HOH 495 5 HOH HOH 495 H HOH 496 5 HOH HOH 496 H HOH 498 5 HOH HOH 498 H HOH 499 5 HOH HOH 499 H HOH 504 5 HOH HOH 504 H HOH 505 5 HOH HOH 505 H HOH 506 5 HOH HOH 506 H HOH 509 5 HOH HOH 509 H HOH 511 5 HOH HOH 511 H HOH 512 5 HOH HOH 512 H HOH 513 5 HOH HOH 513 H HOH 514 5 HOH HOH 514 H HOH 516 5 HOH HOH 516 H HOH 517 5 HOH HOH 517 H HOH 518 5 HOH HOH 518 H HOH 519 5 HOH HOH 519 H HOH 520 5 HOH HOH 520 H HOH 522 5 HOH HOH 522 H HOH 523 5 HOH HOH 523 H HOH 524 5 HOH HOH 524 H HOH 526 5 HOH HOH 526 H HOH 527 5 HOH HOH 527 H HOH 529 5 HOH HOH 529 H HOH 533 5 HOH HOH 533 H HOH 534 5 HOH HOH 534 H HOH 538 5 HOH HOH 538 H HOH 539 5 HOH HOH 539 H HOH 544 5 HOH HOH 544 H HOH 545 5 HOH HOH 545 H HOH 546 5 HOH HOH 546 H HOH 548 5 HOH HOH 548 H HOH 549 5 HOH HOH 549 H HOH 550 5 HOH HOH 550 H HOH 551 5 HOH HOH 551 H HOH 553 5 HOH HOH 553 H HOH 555 5 HOH HOH 555 H HOH 556 5 HOH HOH 556 H HOH 558 5 HOH HOH 558 H HOH 560 5 HOH HOH 560 H HOH 561 5 HOH HOH 561 H HOH 562 5 HOH HOH 562 H HOH 563 5 HOH HOH 563 H HOH 568 5 HOH HOH 568 H HOH 570 5 HOH HOH 570 H HOH 571 5 HOH HOH 571 H HOH 572 5 HOH HOH 572 H HOH 575 5 HOH HOH 575 H HOH 578 5 HOH HOH 578 H HOH 579 5 HOH HOH 579 H HOH 580 5 HOH HOH 580 H HOH 582 5 HOH HOH 582 H HOH 583 5 HOH HOH 583 H HOH 584 5 HOH HOH 584 H HOH 590 5 HOH HOH 590 H HOH 591 5 HOH HOH 591 H HOH 593 5 HOH HOH 593 H HOH 595 5 HOH HOH 595 H HOH 596 5 HOH HOH 596 H HOH 598 5 HOH HOH 598 H HOH 600 5 HOH HOH 600 H HOH 601 5 HOH HOH 601 H HOH 604 5 HOH HOH 604 H HOH 606 5 HOH HOH 606 H HOH 607 5 HOH HOH 607 H HOH 608 5 HOH HOH 608 H HOH 610 5 HOH HOH 610 H HOH 611 5 HOH HOH 611 H HOH 617 5 HOH HOH 617 H HOH 618 5 HOH HOH 618 H HOH 619 5 HOH HOH 619 H HOH 620 5 HOH HOH 620 H HOH 621 5 HOH HOH 621 H HOH 624 5 HOH HOH 624 H HOH 625 5 HOH HOH 625 H HOH 626 5 HOH HOH 626 H HOH 627 5 HOH HOH 627 H HOH 628 5 HOH HOH 628 H HOH 629 5 HOH HOH 629 H HOH 630 5 HOH HOH 630 H HOH 633 5 HOH HOH 633 H HOH 634 5 HOH HOH 634 H HOH 635 5 HOH HOH 635 H HOH 637 5 HOH HOH 637 H HOH 638 5 HOH HOH 638 H HOH 639 5 HOH HOH 639 H HOH 640 5 HOH HOH 640 H HOH 644 5 HOH HOH 644 H HOH 645 5 HOH HOH 645 H HOH 647 5 HOH HOH 647 H HOH 649 5 HOH HOH 649 H HOH 652 5 HOH HOH 652 H HOH 656 5 HOH HOH 656 H HOH 658 5 HOH HOH 658 H HOH 660 5 HOH HOH 660 H HOH 661 5 HOH HOH 661 H HOH 662 5 HOH HOH 662 H HOH 663 5 HOH HOH 663 H HOH 664 5 HOH HOH 664 H HOH 665 5 HOH HOH 665 H HOH 666 5 HOH HOH 666 H HOH 667 5 HOH HOH 667 H HOH 668 5 HOH HOH 668 H HOH 670 5 HOH HOH 670 H HOH 674 5 HOH HOH 674 H HOH 679 5 HOH HOH 679 H HOH 680 5 HOH HOH 680 H HOH 685 5 HOH HOH 685 H HOH 686 5 HOH HOH 686 H HOH 687 5 HOH HOH 687 H HOH 688 5 HOH HOH 688 H HOH 689 5 HOH HOH 689 H HOH 692 5 HOH HOH 692 H HOH 693 5 HOH HOH 693 H HOH 694 5 HOH HOH 694 H HOH 696 5 HOH HOH 696 H HOH 697 5 HOH HOH 697 H HOH 698 5 HOH HOH 698 H HOH 699 5 HOH HOH 699 H HOH 701 5 HOH HOH 701 H HOH 702 5 HOH HOH 702 H HOH 703 5 HOH HOH 703 H HOH 704 5 HOH HOH 704 H HOH 705 5 HOH HOH 705 H HOH 706 5 HOH HOH 706 H HOH 709 5 HOH HOH 709 H HOH 710 5 HOH HOH 710 H HOH 711 5 HOH HOH 711 H HOH 713 5 HOH HOH 713 H HOH 714 5 HOH HOH 714 H HOH 715 5 HOH HOH 715 H HOH 717 5 HOH HOH 717 H HOH 718 5 HOH HOH 718 H HOH 720 5 HOH HOH 720 H HOH 723 5 HOH HOH 723 H HOH 724 5 HOH HOH 724 H HOH 725 5 HOH HOH 725 H HOH 727 5 HOH HOH 727 H HOH 728 5 HOH HOH 728 H HOH 730 5 HOH HOH 730 H HOH 732 5 HOH HOH 732 H HOH 733 5 HOH HOH 733 H HOH 734 5 HOH HOH 734 H HOH 735 5 HOH HOH 735 H HOH 738 5 HOH HOH 738 H HOH 401 5 HOH HOH 401 I HOH 410 5 HOH HOH 410 I HOH 451 5 HOH HOH 451 I HOH 467 5 HOH HOH 467 I HOH 469 5 HOH HOH 469 I HOH 472 5 HOH HOH 472 I HOH 478 5 HOH HOH 478 I HOH 483 5 HOH HOH 483 I HOH 490 5 HOH HOH 490 I HOH 493 5 HOH HOH 493 I HOH 502 5 HOH HOH 502 I HOH 508 5 HOH HOH 508 I HOH 521 5 HOH HOH 521 I HOH 541 5 HOH HOH 541 I HOH 542 5 HOH HOH 542 I HOH 543 5 HOH HOH 543 I HOH 557 5 HOH HOH 557 I HOH 564 5 HOH HOH 564 I HOH 566 5 HOH HOH 566 I HOH 569 5 HOH HOH 569 I HOH 573 5 HOH HOH 573 I HOH 574 5 HOH HOH 574 I HOH 586 5 HOH HOH 586 I HOH 587 5 HOH HOH 587 I HOH 592 5 HOH HOH 592 I HOH 612 5 HOH HOH 612 I HOH 615 5 HOH HOH 615 I HOH 622 5 HOH HOH 622 I HOH 623 5 HOH HOH 623 I HOH 636 5 HOH HOH 636 I HOH 642 5 HOH HOH 642 I HOH 643 5 HOH HOH 643 I HOH 655 5 HOH HOH 655 I HOH 657 5 HOH HOH 657 I HOH 672 5 HOH HOH 672 I HOH 673 5 HOH HOH 673 I HOH 676 5 HOH HOH 676 I HOH 677 5 HOH HOH 677 I HOH 681 5 HOH HOH 681 I HOH 682 5 HOH HOH 682 I HOH 691 5 HOH HOH 691 I HOH 722 5 HOH HOH 722 I HOH 726 5 HOH HOH 726 I HOH 736 5 HOH HOH 736 I HOH 737 5 HOH HOH 737 I n 1 H 1 L n 2 G 1 L GLY 1 n 3 F GLY 1 L SER 1 n 4 E SER 1 L GLY 1 n 5 D GLY 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L ASP 14 n 34 L ASP 14 L GLY 14 n 35 M GLY 14 L n 36 N 14 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H TRP 148 n 148 TRP 148 H THR 149 n 149 THR 149 H ALA 149 n 150 A ALA 149 H ASN 149 n 151 B ASN 149 H VAL 149 n 152 C VAL 149 H GLY 149 n 153 D GLY 149 H LYS 149 n 154 E LYS 149 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H n 259 247 H ILE 1 n 1 ILE 1 I THR 2 n 2 THR 2 I TYR 3 n 3 TYR 3 I THR 4 n 4 THR 4 I ASP 5 n 5 ASP 5 I CYS 6 n 6 CYS 6 I THR 7 n 7 THR 7 I GLU 8 n 8 GLU 8 I SER 9 n 9 SER 9 I GLY 10 n 10 GLY 10 I GLN 11 n 11 GLN 11 I ASN 12 n 12 ASN 12 I LEU 13 n 13 LEU 13 I CYS 14 n 14 CYS 14 I LEU 15 n 15 LEU 15 I CYS 16 n 16 CYS 16 I GLU 17 n 17 GLU 17 I GLY 18 n 18 GLY 18 I SER 19 n 19 SER 19 I ASN 20 n 20 ASN 20 I VAL 21 n 21 VAL 21 I CYS 22 n 22 CYS 22 I GLY 23 n 23 GLY 23 I LYS 24 n 24 LYS 24 I GLY 25 n 25 GLY 25 I ASN 26 n 26 ASN 26 I LYS 27 n 27 LYS 27 I CYS 28 n 28 CYS 28 I ILE 29 n 29 ILE 29 I LEU 30 n 30 LEU 30 I GLY 31 n 31 GLY 31 I n 32 32 I n 33 33 I n 34 34 I n 35 35 I GLY 36 n 36 GLY 36 I ASN 37 n 37 ASN 37 I GLN 38 n 38 GLN 38 I CYS 39 n 39 CYS 39 I VAL 40 n 40 VAL 40 I THR 41 n 41 THR 41 I GLY 42 n 42 GLY 42 I GLU 43 n 43 GLU 43 I GLY 44 n 44 GLY 44 I THR 45 n 45 THR 45 I PRO 46 n 46 PRO 46 I LYS 47 n 47 LYS 47 I PRO 48 n 48 PRO 48 I GLU 49 n 49 GLU 49 I SER 50 n 50 SER 50 I HIS 51 n 51 HIS 51 I ASN 52 n 52 ASN 52 I ASN 53 n 53 ASN 53 I GLY 54 n 54 GLY 54 I ASP 55 n 55 ASP 55 I PHE 56 n 56 PHE 56 I GLU 57 n 57 GLU 57 I GLU 58 n 58 GLU 58 I ILE 59 n 59 ILE 59 I PRO 60 n 60 PRO 60 I GLU 61 n 61 GLU 61 I GLU 62 n 62 GLU 62 I TYR 63 n 63 TYR 63 I LEU 64 n 64 LEU 64 I GLN 65 n 65 GLN 65 I author_and_software_defined_assembly PISA 3 trimeric software_defined_assembly PISA 6 hexameric 5740 -13 15520 12830 -35 29690 G H ASN 60 GLYCOSYLATION SITE B ASN 53 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_646 y+1,x-1,-z+1 crystal symmetry operation 90.5400000000 -90.5400000000 132.0400000000 C 1 L OE2 GLU 1 A OE2 GLU 6 1 Y 1 L NZ LYS 10 A NZ LYS 18 1 Y L 1 L OD1 ASP 14 A OD1 ASP 34 1 Y L 1 L OD2 ASP 14 A OD2 ASP 34 1 Y 1 H NH1 ARG 50 B NH1 ARG 36 1 Y 1 H NH2 ARG 50 B NH2 ARG 36 1 Y E 1 H CG ASP 60 B CG ASP 51 1 Y E 1 H OD1 ASP 60 B OD1 ASP 51 1 Y E 1 H OD2 ASP 60 B OD2 ASP 51 1 Y 1 H NH2 ARG 93 B NH2 ARG 89 1 Y A 1 H CB GLU 97 B CB GLU 94 1 Y A 1 H CG GLU 97 B CG GLU 94 1 Y A 1 H CD GLU 97 B CD GLU 94 1 Y A 1 H OE1 GLU 97 B OE1 GLU 94 1 Y A 1 H OE2 GLU 97 B OE2 GLU 94 1 Y 1 H CA GLY 246 B CA GLY 258 1 Y 1 H C GLY 246 B C GLY 258 1 Y 1 H O GLY 246 B O GLY 258 1 Y 1 I CG2 ILE 29 C CG2 ILE 29 1 Y 1 I CG GLU 43 C CG GLU 43 1 Y 1 I CD GLU 43 C CD GLU 43 1 Y 1 I OE1 GLU 43 C OE1 GLU 43 1 Y 1 I OE2 GLU 43 C OE2 GLU 43 1 Y H 1 L THR 1 A THR 1 1 Y G 1 L PHE 1 A PHE 2 1 Y N 1 L ARG 14 A ARG 36 1 Y 1 H GLU 247 B GLU 259 1 Y 1 I SER 32 C SER 32 1 Y 1 I ASN 33 C ASN 33 1 Y 1 I GLY 34 C GLY 34 1 Y 1 I LYS 35 C LYS 35 1 Y 1 H C1 NAG 400 WRONG HAND 1 H H N O ASN HOH 78 596 1.65 1 H H NH1 O ARG MET 165 180 2.18 1 H ARG 206 0.110 SIDE CHAIN A A A 1 -11.36 1.80 110.60 99.24 L L L N CA CB ASP ASP ASP 1 1 1 N 1 9.96 1.40 123.60 133.56 L L L CD NE CZ ARG ARG ARG 4 4 4 N 1 7.33 1.20 123.30 130.63 L L L OE1 CD OE2 GLU GLU GLU 8 8 8 N 1 14.81 2.20 113.40 128.21 L L L CA CB CG LYS LYS LYS 9 9 9 N 1 -7.29 1.20 123.30 116.01 L L L OE1 CD OE2 GLU GLU GLU 13 13 13 N 1 12.16 2.00 118.30 130.46 L L L CG CD OE2 GLU GLU GLU 13 13 13 N C C C 1 -12.08 2.00 110.40 98.32 L L L CB CA C GLU GLU GLU 14 14 14 N C C C 1 10.85 1.20 123.30 134.15 L L L OE1 CD OE2 GLU GLU GLU 14 14 14 N D D D 1 7.97 0.50 120.30 128.27 L L L NE CZ NH1 ARG ARG ARG 14 14 14 N D D D 1 -5.90 0.50 120.30 114.40 L L L NE CZ NH2 ARG ARG ARG 14 14 14 N H H H 1 10.85 1.20 123.30 134.15 L L L OE1 CD OE2 GLU GLU GLU 14 14 14 N H H H 1 -14.66 2.00 118.30 103.64 L L L CG CD OE2 GLU GLU GLU 14 14 14 N 1 -10.20 1.50 110.50 100.30 H H H N CA CB SER SER SER 27 27 27 N 1 11.27 1.40 123.60 134.87 H H H CD NE CZ ARG ARG ARG 35 35 35 N 1 -7.07 1.10 119.40 112.33 H H H NH1 CZ NH2 ARG ARG ARG 35 35 35 N 1 12.49 0.50 120.30 132.79 H H H NE CZ NH1 ARG ARG ARG 35 35 35 N 1 -5.45 0.50 120.30 114.85 H H H NE CZ NH2 ARG ARG ARG 35 35 35 N 1 14.62 2.20 113.40 128.02 H H H CA CB CG GLU GLU GLU 61 61 61 N 1 3.62 0.50 120.30 123.92 H H H NE CZ NH2 ARG ARG ARG 67 67 67 N 1 5.12 0.70 109.00 114.12 H H H CE1 NE2 CD2 HIS HIS HIS 71 71 71 N 1 -14.79 2.10 111.80 97.01 H H H CG CD NE ARG ARG ARG 73 73 73 N 1 12.43 0.50 120.30 132.73 H H H NE CZ NH1 ARG ARG ARG 73 73 73 N 1 -12.63 0.50 120.30 107.67 H H H NE CZ NH2 ARG ARG ARG 73 73 73 N A A 1 15.72 2.50 121.70 137.42 H H H C N CA GLU ARG ARG 77 77 77 Y A A A 1 12.20 1.40 123.60 135.80 H H H CD NE CZ ARG ARG ARG 77 77 77 N A A A 1 -6.98 1.10 119.40 112.42 H H H NH1 CZ NH2 ARG ARG ARG 77 77 77 N A A A 1 11.43 0.50 120.30 131.73 H H H NE CZ NH1 ARG ARG ARG 77 77 77 N A A A 1 -4.67 0.50 120.30 115.63 H H H NE CZ NH2 ARG ARG ARG 77 77 77 N 1 -13.05 2.00 121.60 108.55 H H H CB CG OD1 ASN ASN ASN 78 78 78 N 1 12.53 2.00 118.30 130.83 H H H CG CD OE2 GLU GLU GLU 86 86 86 N 1 -3.70 0.60 121.00 117.30 H H H CB CG CD2 TYR TYR TYR 89 89 89 N 1 -4.11 0.60 121.00 116.89 H H H CB CG CD2 TYR TYR TYR 94 94 94 N 1 12.81 2.10 120.10 132.91 H H H CA C O ARG ARG ARG 97 97 97 N 1 -10.93 1.40 123.60 112.67 H H H CD NE CZ ARG ARG ARG 101 101 101 N 1 6.85 1.10 119.40 126.25 H H H NH1 CZ NH2 ARG ARG ARG 101 101 101 N 1 -3.82 0.50 120.30 116.48 H H H NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -3.46 0.50 120.30 116.84 H H H NE CZ NH2 ARG ARG ARG 101 101 101 N 1 -5.51 0.90 118.30 112.79 H H H CB CG OD2 ASP ASP ASP 116 116 116 N 1 12.01 1.90 110.20 122.21 H H H CB CA C LEU LEU LEU 123 123 123 N 1 -8.51 1.20 123.30 114.79 H H H OE1 CD OE2 GLU GLU GLU 127 127 127 N 1 8.02 1.20 123.30 131.32 H H H OE1 CD OE2 GLU GLU GLU 146 146 146 N 1 -16.36 2.00 118.30 101.94 H H H CG CD OE2 GLU GLU GLU 146 146 146 N 1 8.69 1.40 112.40 121.09 H H H CA CB CG2 THR THR THR 147 147 147 N 1 11.59 1.80 110.60 122.19 H H H N CA CB GLN GLN GLN 151 151 151 N 1 20.70 2.20 113.40 134.10 H H H CA CB CG GLN GLN GLN 151 151 151 N 1 10.43 1.50 110.90 121.33 H H H CA CB CG1 VAL VAL VAL 154 154 154 N 1 -4.91 0.50 120.30 115.39 H H H NE CZ NH2 ARG ARG ARG 165 165 165 N 1 15.33 1.40 123.60 138.93 H H H CD NE CZ ARG ARG ARG 175 175 175 N 1 12.29 0.50 120.30 132.59 H H H NE CZ NH1 ARG ARG ARG 175 175 175 N 1 -8.97 0.50 120.30 111.33 H H H NE CZ NH2 ARG ARG ARG 175 175 175 N 1 -12.11 2.00 110.40 98.29 H H H CB CA C MET MET MET 180 180 180 N 1 -14.86 2.20 113.40 98.54 H H H CA CB CG LYS LYS LYS 185 185 185 N D D D 1 10.90 1.80 110.60 121.50 H H H N CA CB LYS LYS LYS 186 186 186 N 1 -4.23 0.50 120.30 116.07 H H H NE CZ NH1 ARG ARG ARG 187 187 187 N 1 9.99 1.20 123.30 133.29 H H H OE1 CD OE2 GLU GLU GLU 192 192 192 N A A A 1 -12.81 2.10 120.10 107.29 H H H CA C O PHE PHE PHE 204 204 204 N 1 -8.38 0.50 120.30 111.92 H H H NE CZ NH1 ARG ARG ARG 206 206 206 N 1 5.65 0.50 120.30 125.95 H H H NE CZ NH2 ARG ARG ARG 206 206 206 N 1 13.57 1.60 122.70 136.27 H H H O C N ILE ILE VAL 212 212 213 Y A A A 1 13.01 1.40 123.60 136.61 H H H CD NE CZ ARG ARG ARG 221 221 221 N A A A 1 6.05 0.50 120.30 126.35 H H H NE CZ NH2 ARG ARG ARG 221 221 221 N 1 8.12 0.90 118.30 126.42 H H H CB CG OD1 ASP ASP ASP 222 222 222 N 1 -4.38 0.70 120.80 116.42 H H H CB CG CD1 PHE PHE PHE 232 232 232 N 1 13.45 2.10 111.80 125.25 H H H CG CD NE ARG ARG ARG 233 233 233 N 1 -13.07 1.40 123.60 110.53 H H H CD NE CZ ARG ARG ARG 233 233 233 N 1 12.39 1.80 110.60 122.99 H H H N CA CB PHE PHE PHE 245 245 245 N 1 12.64 1.70 123.20 135.84 H H H O C N PHE PHE GLY 245 245 246 Y 1 -5.66 0.60 121.00 115.34 I I I CB CG CD1 TYR TYR TYR 3 3 3 N 1 10.66 1.40 112.40 123.06 I I I CA CB CG2 THR THR THR 7 7 7 N 1 12.95 1.80 110.60 123.55 I I I N CA CB ASN ASN ASN 26 26 26 N 1 11.82 1.20 123.30 135.12 I I I OE1 CD OE2 GLU GLU GLU 61 61 61 N 1 -12.46 2.00 118.30 105.84 I I I CG CD OE1 GLU GLU GLU 61 61 61 N 1 H H CA CB SER SER 195 195 0.114 0.015 1.525 1.639 N E 1 L H O O SER GLU 1 146 2.13 1_555 5_645 E 1 L SER 1 -81.71 -86.54 A 1 L ASP 1 -79.46 34.66 1 L PHE 7 -121.63 -100.58 L 1 L ASP 14 75.33 100.49 1 H ARG 50 -140.22 -13.28 A 1 H TYR 60 -160.14 88.40 G 1 H ASN 60 -156.13 75.48 A 1 H ARG 77 -29.07 -62.88 1 H ARG 97 -59.23 78.99 A 1 H GLU 97 30.73 80.01 1 H ASN 98 -164.83 -42.41 1 H SER 115 -162.45 -167.67 1 H SER 214 -108.95 -69.48 1 I CYS 16 -111.13 -75.64 1 I SER 19 -96.94 40.61 1 I LEU 30 -68.92 79.02 1 I ASN 52 -91.72 48.72 1 I ASN 53 171.64 -176.70 0.173 2.3 7.0 21056 1 2.3 7.0 262 3045 14 0 2769 0.021 0.020 0.051 0.035 0.052 0.045 0.6 0.5 1.1 1.0 1.2 1.0 1.9 1.5 0.017 0.020 0.20 0.15 0.22 0.55 0.27 0.55 0.27 0.55 3.0 3.0 23. 20.0 29. 25.0 refinement PROFFT ALPHA-THROMBIN (E.C.3.4.21.5) COMPLEX WITH RECOMBINANT HIRUDIN (VARIANT 2, LYS 47) THE REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N I PRO 46 C PRO 46 HELX_P POLYPROLINE HELIX I HIS 51 C HIS 51 10 HH1 6 disulf 2.071 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.103 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.104 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.020 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 disulf 2.005 I CYS 6 C SG CYS 6 1_555 I CYS 14 C SG CYS 14 1_555 disulf 2.065 I CYS 16 C SG CYS 16 1_555 I CYS 28 C SG CYS 28 1_555 disulf 2.047 I CYS 22 C SG CYS 22 1_555 I CYS 39 C SG CYS 39 1_555 covale 1.575 one G N-Glycosylation H ASN 60 B ND2 ASN 53 1_555 H NAG 400 D C1 NAG 1_555 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE-HYDROLASE INHIBITOR COMPLEX, SERINE PROTEASE H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -0.32 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITH3_HIRME UNP 3 8 P09945 328 363 4HTC 1 14 P00734 H N L 1 1 36 364 622 4HTC 16 247 P00734 H 2 1 259 8 72 4HTC 1 65 P09945 I 3 1 65 3 ASN conflict LYS 47 4HTC I P09945 UNP 54 47 2 2 anti-parallel anti-parallel I CYS 14 C CYS 14 I CYS 16 C CYS 16 I ASN 20 C ASN 20 I CYS 22 C CYS 22 I LYS 27 C LYS 27 I LEU 30 C LEU 30 I GLY 36 C GLY 36 I VAL 40 C VAL 40 Unknown 3 H HIS 57 B HIS 43 3 1_555 H ASP 102 B ASP 99 3 1_555 H SER 195 B SER 205 3 1_555 96 P 43 21 2