0.011403
0.000000
0.000000
0.000000
0.008197
0.000000
0.000000
0.000000
0.006523
0.000000
0.000000
0.000000
Osipiuk, J.
Mack, J.
Endres, M.
Salazar, J.
Zhang, W.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
87.694
121.989
153.297
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Lmo2764 protein, a putative N-acetylmannosamine kinase, from Listeria monocytogenes.
100
1
CCD
2012-10-04
ADSC QUANTUM 210r
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
19-BM
APS
0.9792
SYNCHROTRON
APS BEAMLINE 19-BM
32824.035
Beta-glucoside kinase
2.7.1.85
1
man
polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
316
nat
water
no
yes
SNA(MSE)KIAAFDIGGTALK(MSE)GVVLPHGEIILTKSAEISGSDGDQILAE(MSE)KVFLAENTDVTGIAVSAPGYV
NPKTGLIT(MSE)GGAIRRFDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGE
LVRGGRFRAGEFGY(MSE)FSERPGAFRPGKYTLNETTT(MSE)LVLRRQYAELTGRPLEEITGEEIFANYDAHDAVSER
LITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHH(MSE)ESFGLRDTIIETATHKNQAGLLGAVYHFLQE
ENRHE
SNAMKIAAFDIGGTALKMGVVLPHGEIILTKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGA
IRRFDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMF
SERPGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDPTH
IFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQEENRHE
A
MCSG-APC106902
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
EGD-e
sample
bglK, lmo2764
169963
Listeria monocytogenes
469008
Escherichia coli
BL21(DE3)
plasmid
pMCSG68
1
3.12
60.61
VAPOR DIFFUSION, SITTING DROP
8.5
0.2 M lithium sulfate, 0.1 M Tris-HCl, 30% PEG 4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI:Biology
software
repository
Initial release
Refinement description
1
0
2012-11-14
1
1
2017-11-15
Y
RCSB
Y
RCSB
2012-11-01
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
EDO
1
2
EDO
EDO
301
A
HOH
1
3
HOH
HOH
401
A
HOH
2
3
HOH
HOH
402
A
HOH
3
3
HOH
HOH
403
A
HOH
4
3
HOH
HOH
404
A
HOH
5
3
HOH
HOH
405
A
HOH
6
3
HOH
HOH
406
A
HOH
7
3
HOH
HOH
407
A
HOH
8
3
HOH
HOH
408
A
HOH
9
3
HOH
HOH
409
A
HOH
10
3
HOH
HOH
410
A
HOH
11
3
HOH
HOH
411
A
HOH
12
3
HOH
HOH
412
A
HOH
13
3
HOH
HOH
413
A
HOH
14
3
HOH
HOH
414
A
HOH
15
3
HOH
HOH
415
A
HOH
16
3
HOH
HOH
416
A
HOH
17
3
HOH
HOH
417
A
HOH
18
3
HOH
HOH
418
A
HOH
19
3
HOH
HOH
419
A
HOH
20
3
HOH
HOH
420
A
HOH
21
3
HOH
HOH
421
A
HOH
22
3
HOH
HOH
422
A
HOH
23
3
HOH
HOH
423
A
HOH
24
3
HOH
HOH
424
A
HOH
25
3
HOH
HOH
425
A
HOH
26
3
HOH
HOH
426
A
HOH
27
3
HOH
HOH
427
A
HOH
28
3
HOH
HOH
428
A
HOH
29
3
HOH
HOH
429
A
HOH
30
3
HOH
HOH
430
A
HOH
31
3
HOH
HOH
431
A
HOH
32
3
HOH
HOH
432
A
HOH
33
3
HOH
HOH
433
A
HOH
34
3
HOH
HOH
434
A
HOH
35
3
HOH
HOH
435
A
HOH
36
3
HOH
HOH
436
A
HOH
37
3
HOH
HOH
437
A
HOH
38
3
HOH
HOH
438
A
HOH
39
3
HOH
HOH
439
A
HOH
40
3
HOH
HOH
440
A
HOH
41
3
HOH
HOH
441
A
HOH
42
3
HOH
HOH
442
A
HOH
43
3
HOH
HOH
443
A
HOH
44
3
HOH
HOH
444
A
HOH
45
3
HOH
HOH
445
A
HOH
46
3
HOH
HOH
446
A
HOH
47
3
HOH
HOH
447
A
HOH
48
3
HOH
HOH
448
A
HOH
49
3
HOH
HOH
449
A
HOH
50
3
HOH
HOH
450
A
HOH
51
3
HOH
HOH
451
A
HOH
52
3
HOH
HOH
452
A
HOH
53
3
HOH
HOH
453
A
HOH
54
3
HOH
HOH
454
A
HOH
55
3
HOH
HOH
455
A
HOH
56
3
HOH
HOH
456
A
HOH
57
3
HOH
HOH
457
A
HOH
58
3
HOH
HOH
458
A
HOH
59
3
HOH
HOH
459
A
HOH
60
3
HOH
HOH
460
A
HOH
61
3
HOH
HOH
461
A
HOH
62
3
HOH
HOH
462
A
HOH
63
3
HOH
HOH
463
A
HOH
64
3
HOH
HOH
464
A
HOH
65
3
HOH
HOH
465
A
HOH
66
3
HOH
HOH
466
A
HOH
67
3
HOH
HOH
467
A
HOH
68
3
HOH
HOH
468
A
HOH
69
3
HOH
HOH
469
A
HOH
70
3
HOH
HOH
470
A
HOH
71
3
HOH
HOH
471
A
HOH
72
3
HOH
HOH
472
A
HOH
73
3
HOH
HOH
473
A
HOH
74
3
HOH
HOH
474
A
HOH
75
3
HOH
HOH
475
A
HOH
76
3
HOH
HOH
476
A
HOH
77
3
HOH
HOH
477
A
HOH
78
3
HOH
HOH
478
A
HOH
79
3
HOH
HOH
479
A
HOH
80
3
HOH
HOH
480
A
HOH
81
3
HOH
HOH
481
A
HOH
82
3
HOH
HOH
482
A
HOH
83
3
HOH
HOH
483
A
HOH
84
3
HOH
HOH
484
A
HOH
85
3
HOH
HOH
485
A
HOH
86
3
HOH
HOH
486
A
HOH
87
3
HOH
HOH
487
A
HOH
88
3
HOH
HOH
488
A
HOH
89
3
HOH
HOH
489
A
HOH
90
3
HOH
HOH
490
A
HOH
91
3
HOH
HOH
491
A
HOH
92
3
HOH
HOH
492
A
HOH
93
3
HOH
HOH
493
A
HOH
94
3
HOH
HOH
494
A
HOH
95
3
HOH
HOH
495
A
HOH
96
3
HOH
HOH
496
A
HOH
97
3
HOH
HOH
497
A
HOH
98
3
HOH
HOH
498
A
HOH
99
3
HOH
HOH
499
A
HOH
100
3
HOH
HOH
500
A
HOH
101
3
HOH
HOH
501
A
HOH
102
3
HOH
HOH
502
A
HOH
103
3
HOH
HOH
503
A
HOH
104
3
HOH
HOH
504
A
HOH
105
3
HOH
HOH
505
A
HOH
106
3
HOH
HOH
506
A
HOH
107
3
HOH
HOH
507
A
HOH
108
3
HOH
HOH
508
A
HOH
109
3
HOH
HOH
509
A
HOH
110
3
HOH
HOH
510
A
HOH
111
3
HOH
HOH
511
A
HOH
112
3
HOH
HOH
512
A
HOH
113
3
HOH
HOH
513
A
HOH
114
3
HOH
HOH
514
A
HOH
115
3
HOH
HOH
515
A
HOH
116
3
HOH
HOH
516
A
HOH
117
3
HOH
HOH
517
A
HOH
118
3
HOH
HOH
518
A
HOH
119
3
HOH
HOH
519
A
HOH
120
3
HOH
HOH
520
A
HOH
121
3
HOH
HOH
521
A
HOH
122
3
HOH
HOH
522
A
HOH
123
3
HOH
HOH
523
A
HOH
124
3
HOH
HOH
524
A
HOH
125
3
HOH
HOH
525
A
HOH
126
3
HOH
HOH
526
A
HOH
127
3
HOH
HOH
527
A
HOH
128
3
HOH
HOH
528
A
HOH
129
3
HOH
HOH
529
A
HOH
130
3
HOH
HOH
530
A
HOH
131
3
HOH
HOH
531
A
HOH
132
3
HOH
HOH
532
A
HOH
133
3
HOH
HOH
533
A
HOH
134
3
HOH
HOH
534
A
HOH
135
3
HOH
HOH
535
A
HOH
136
3
HOH
HOH
536
A
HOH
137
3
HOH
HOH
537
A
HOH
138
3
HOH
HOH
538
A
HOH
139
3
HOH
HOH
539
A
HOH
140
3
HOH
HOH
540
A
HOH
141
3
HOH
HOH
541
A
HOH
142
3
HOH
HOH
542
A
HOH
143
3
HOH
HOH
543
A
HOH
144
3
HOH
HOH
544
A
HOH
145
3
HOH
HOH
545
A
HOH
146
3
HOH
HOH
546
A
HOH
147
3
HOH
HOH
547
A
HOH
148
3
HOH
HOH
548
A
HOH
149
3
HOH
HOH
549
A
HOH
150
3
HOH
HOH
550
A
HOH
151
3
HOH
HOH
551
A
HOH
152
3
HOH
HOH
552
A
HOH
153
3
HOH
HOH
553
A
HOH
154
3
HOH
HOH
554
A
HOH
155
3
HOH
HOH
555
A
HOH
156
3
HOH
HOH
556
A
HOH
157
3
HOH
HOH
557
A
HOH
158
3
HOH
HOH
558
A
HOH
159
3
HOH
HOH
559
A
HOH
160
3
HOH
HOH
560
A
HOH
161
3
HOH
HOH
561
A
HOH
162
3
HOH
HOH
562
A
HOH
163
3
HOH
HOH
563
A
HOH
164
3
HOH
HOH
564
A
HOH
165
3
HOH
HOH
565
A
HOH
166
3
HOH
HOH
566
A
HOH
167
3
HOH
HOH
567
A
HOH
168
3
HOH
HOH
568
A
HOH
169
3
HOH
HOH
569
A
HOH
170
3
HOH
HOH
570
A
HOH
171
3
HOH
HOH
571
A
HOH
172
3
HOH
HOH
572
A
HOH
173
3
HOH
HOH
573
A
HOH
174
3
HOH
HOH
574
A
HOH
175
3
HOH
HOH
575
A
HOH
176
3
HOH
HOH
576
A
HOH
177
3
HOH
HOH
577
A
HOH
178
3
HOH
HOH
578
A
HOH
179
3
HOH
HOH
579
A
HOH
180
3
HOH
HOH
580
A
HOH
181
3
HOH
HOH
581
A
HOH
182
3
HOH
HOH
582
A
HOH
183
3
HOH
HOH
583
A
HOH
184
3
HOH
HOH
584
A
HOH
185
3
HOH
HOH
585
A
HOH
186
3
HOH
HOH
586
A
HOH
187
3
HOH
HOH
587
A
HOH
188
3
HOH
HOH
588
A
HOH
189
3
HOH
HOH
589
A
HOH
190
3
HOH
HOH
590
A
HOH
191
3
HOH
HOH
591
A
HOH
192
3
HOH
HOH
592
A
HOH
193
3
HOH
HOH
593
A
HOH
194
3
HOH
HOH
594
A
HOH
195
3
HOH
HOH
595
A
HOH
196
3
HOH
HOH
596
A
HOH
197
3
HOH
HOH
597
A
HOH
198
3
HOH
HOH
598
A
HOH
199
3
HOH
HOH
599
A
HOH
200
3
HOH
HOH
600
A
HOH
201
3
HOH
HOH
601
A
HOH
202
3
HOH
HOH
602
A
HOH
203
3
HOH
HOH
603
A
HOH
204
3
HOH
HOH
604
A
HOH
205
3
HOH
HOH
605
A
HOH
206
3
HOH
HOH
606
A
HOH
207
3
HOH
HOH
607
A
HOH
208
3
HOH
HOH
608
A
HOH
209
3
HOH
HOH
609
A
HOH
210
3
HOH
HOH
610
A
HOH
211
3
HOH
HOH
611
A
HOH
212
3
HOH
HOH
612
A
HOH
213
3
HOH
HOH
613
A
HOH
214
3
HOH
HOH
614
A
HOH
215
3
HOH
HOH
615
A
HOH
216
3
HOH
HOH
616
A
HOH
217
3
HOH
HOH
617
A
HOH
218
3
HOH
HOH
618
A
HOH
219
3
HOH
HOH
619
A
HOH
220
3
HOH
HOH
620
A
HOH
221
3
HOH
HOH
621
A
HOH
222
3
HOH
HOH
622
A
HOH
223
3
HOH
HOH
623
A
HOH
224
3
HOH
HOH
624
A
HOH
225
3
HOH
HOH
625
A
HOH
226
3
HOH
HOH
626
A
HOH
227
3
HOH
HOH
627
A
HOH
228
3
HOH
HOH
628
A
HOH
229
3
HOH
HOH
629
A
HOH
230
3
HOH
HOH
630
A
HOH
231
3
HOH
HOH
631
A
HOH
232
3
HOH
HOH
632
A
HOH
233
3
HOH
HOH
633
A
HOH
234
3
HOH
HOH
634
A
HOH
235
3
HOH
HOH
635
A
HOH
236
3
HOH
HOH
636
A
HOH
237
3
HOH
HOH
637
A
HOH
238
3
HOH
HOH
638
A
HOH
239
3
HOH
HOH
639
A
HOH
240
3
HOH
HOH
640
A
HOH
241
3
HOH
HOH
641
A
HOH
242
3
HOH
HOH
642
A
HOH
243
3
HOH
HOH
643
A
HOH
244
3
HOH
HOH
644
A
HOH
245
3
HOH
HOH
645
A
HOH
246
3
HOH
HOH
646
A
HOH
247
3
HOH
HOH
647
A
HOH
248
3
HOH
HOH
648
A
HOH
249
3
HOH
HOH
649
A
HOH
250
3
HOH
HOH
650
A
HOH
251
3
HOH
HOH
651
A
HOH
252
3
HOH
HOH
652
A
HOH
253
3
HOH
HOH
653
A
HOH
254
3
HOH
HOH
654
A
HOH
255
3
HOH
HOH
655
A
HOH
256
3
HOH
HOH
656
A
HOH
257
3
HOH
HOH
657
A
HOH
258
3
HOH
HOH
658
A
HOH
259
3
HOH
HOH
659
A
HOH
260
3
HOH
HOH
660
A
HOH
261
3
HOH
HOH
661
A
HOH
262
3
HOH
HOH
662
A
HOH
263
3
HOH
HOH
663
A
HOH
264
3
HOH
HOH
664
A
HOH
265
3
HOH
HOH
665
A
HOH
266
3
HOH
HOH
666
A
HOH
267
3
HOH
HOH
667
A
HOH
268
3
HOH
HOH
668
A
HOH
269
3
HOH
HOH
669
A
HOH
270
3
HOH
HOH
670
A
HOH
271
3
HOH
HOH
671
A
HOH
272
3
HOH
HOH
672
A
HOH
273
3
HOH
HOH
673
A
HOH
274
3
HOH
HOH
674
A
HOH
275
3
HOH
HOH
675
A
HOH
276
3
HOH
HOH
676
A
HOH
277
3
HOH
HOH
677
A
HOH
278
3
HOH
HOH
678
A
HOH
279
3
HOH
HOH
679
A
HOH
280
3
HOH
HOH
680
A
HOH
281
3
HOH
HOH
681
A
HOH
282
3
HOH
HOH
682
A
HOH
283
3
HOH
HOH
683
A
HOH
284
3
HOH
HOH
684
A
HOH
285
3
HOH
HOH
685
A
HOH
286
3
HOH
HOH
686
A
HOH
287
3
HOH
HOH
687
A
HOH
288
3
HOH
HOH
688
A
HOH
289
3
HOH
HOH
689
A
HOH
290
3
HOH
HOH
690
A
HOH
291
3
HOH
HOH
691
A
HOH
292
3
HOH
HOH
692
A
HOH
293
3
HOH
HOH
693
A
HOH
294
3
HOH
HOH
694
A
HOH
295
3
HOH
HOH
695
A
HOH
296
3
HOH
HOH
696
A
HOH
297
3
HOH
HOH
697
A
HOH
298
3
HOH
HOH
698
A
HOH
299
3
HOH
HOH
699
A
HOH
300
3
HOH
HOH
700
A
HOH
301
3
HOH
HOH
701
A
HOH
302
3
HOH
HOH
702
A
HOH
303
3
HOH
HOH
703
A
HOH
304
3
HOH
HOH
704
A
HOH
305
3
HOH
HOH
705
A
HOH
306
3
HOH
HOH
706
A
HOH
307
3
HOH
HOH
707
A
HOH
308
3
HOH
HOH
708
A
HOH
309
3
HOH
HOH
709
A
HOH
310
3
HOH
HOH
710
A
HOH
311
3
HOH
HOH
711
A
HOH
312
3
HOH
HOH
712
A
HOH
313
3
HOH
HOH
713
A
HOH
314
3
HOH
HOH
714
A
HOH
315
3
HOH
HOH
715
A
HOH
316
3
HOH
HOH
716
A
n
1
-2
A
n
2
-1
A
n
3
0
A
MSE
1
n
4
MSE
1
A
LYS
2
n
5
LYS
2
A
ILE
3
n
6
ILE
3
A
ALA
4
n
7
ALA
4
A
ALA
5
n
8
ALA
5
A
PHE
6
n
9
PHE
6
A
ASP
7
n
10
ASP
7
A
ILE
8
n
11
ILE
8
A
GLY
9
n
12
GLY
9
A
GLY
10
n
13
GLY
10
A
THR
11
n
14
THR
11
A
ALA
12
n
15
ALA
12
A
LEU
13
n
16
LEU
13
A
LYS
14
n
17
LYS
14
A
MSE
15
n
18
MSE
15
A
GLY
16
n
19
GLY
16
A
VAL
17
n
20
VAL
17
A
VAL
18
n
21
VAL
18
A
LEU
19
n
22
LEU
19
A
PRO
20
n
23
PRO
20
A
HIS
21
n
24
HIS
21
A
GLY
22
n
25
GLY
22
A
GLU
23
n
26
GLU
23
A
ILE
24
n
27
ILE
24
A
ILE
25
n
28
ILE
25
A
LEU
26
n
29
LEU
26
A
THR
27
n
30
THR
27
A
LYS
28
n
31
LYS
28
A
SER
29
n
32
SER
29
A
ALA
30
n
33
ALA
30
A
GLU
31
n
34
GLU
31
A
ILE
32
n
35
ILE
32
A
SER
33
n
36
SER
33
A
GLY
34
n
37
GLY
34
A
SER
35
n
38
SER
35
A
ASP
36
n
39
ASP
36
A
GLY
37
n
40
GLY
37
A
ASP
38
n
41
ASP
38
A
GLN
39
n
42
GLN
39
A
ILE
40
n
43
ILE
40
A
LEU
41
n
44
LEU
41
A
ALA
42
n
45
ALA
42
A
GLU
43
n
46
GLU
43
A
MSE
44
n
47
MSE
44
A
LYS
45
n
48
LYS
45
A
VAL
46
n
49
VAL
46
A
PHE
47
n
50
PHE
47
A
LEU
48
n
51
LEU
48
A
ALA
49
n
52
ALA
49
A
GLU
50
n
53
GLU
50
A
ASN
51
n
54
ASN
51
A
THR
52
n
55
THR
52
A
ASP
53
n
56
ASP
53
A
VAL
54
n
57
VAL
54
A
THR
55
n
58
THR
55
A
GLY
56
n
59
GLY
56
A
ILE
57
n
60
ILE
57
A
ALA
58
n
61
ALA
58
A
VAL
59
n
62
VAL
59
A
SER
60
n
63
SER
60
A
ALA
61
n
64
ALA
61
A
PRO
62
n
65
PRO
62
A
GLY
63
n
66
GLY
63
A
TYR
64
n
67
TYR
64
A
VAL
65
n
68
VAL
65
A
ASN
66
n
69
ASN
66
A
PRO
67
n
70
PRO
67
A
LYS
68
n
71
LYS
68
A
THR
69
n
72
THR
69
A
GLY
70
n
73
GLY
70
A
LEU
71
n
74
LEU
71
A
ILE
72
n
75
ILE
72
A
THR
73
n
76
THR
73
A
MSE
74
n
77
MSE
74
A
GLY
75
n
78
GLY
75
A
GLY
76
n
79
GLY
76
A
ALA
77
n
80
ALA
77
A
ILE
78
n
81
ILE
78
A
ARG
79
n
82
ARG
79
A
ARG
80
n
83
ARG
80
A
PHE
81
n
84
PHE
81
A
ASP
82
n
85
ASP
82
A
ASN
83
n
86
ASN
83
A
PHE
84
n
87
PHE
84
A
ASN
85
n
88
ASN
85
A
LEU
86
n
89
LEU
86
A
LYS
87
n
90
LYS
87
A
GLU
88
n
91
GLU
88
A
TRP
89
n
92
TRP
89
A
LEU
90
n
93
LEU
90
A
GLU
91
n
94
GLU
91
A
ALA
92
n
95
ALA
92
A
GLU
93
n
96
GLU
93
A
THR
94
n
97
THR
94
A
GLY
95
n
98
GLY
95
A
LEU
96
n
99
LEU
96
A
PRO
97
n
100
PRO
97
A
VAL
98
n
101
VAL
98
A
ALA
99
n
102
ALA
99
A
ILE
100
n
103
ILE
100
A
GLU
101
n
104
GLU
101
A
ASN
102
n
105
ASN
102
A
ASP
103
n
106
ASP
103
A
ALA
104
n
107
ALA
104
A
ASN
105
n
108
ASN
105
A
CYS
106
n
109
CYS
106
A
ALA
107
n
110
ALA
107
A
LEU
108
n
111
LEU
108
A
LEU
109
n
112
LEU
109
A
ALA
110
n
113
ALA
110
A
GLU
111
n
114
GLU
111
A
LYS
112
n
115
LYS
112
A
TRP
113
n
116
TRP
113
A
LEU
114
n
117
LEU
114
A
GLY
115
n
118
GLY
115
A
LYS
116
n
119
LYS
116
A
GLY
117
n
120
GLY
117
A
GLN
118
n
121
GLN
118
A
ASP
119
n
122
ASP
119
A
LEU
120
n
123
LEU
120
A
ASP
121
n
124
ASP
121
A
ASP
122
n
125
ASP
122
A
PHE
123
n
126
PHE
123
A
LEU
124
n
127
LEU
124
A
CYS
125
n
128
CYS
125
A
LEU
126
n
129
LEU
126
A
THR
127
n
130
THR
127
A
ILE
128
n
131
ILE
128
A
GLY
129
n
132
GLY
129
A
THR
130
n
133
THR
130
A
GLY
131
n
134
GLY
131
A
ILE
132
n
135
ILE
132
A
GLY
133
n
136
GLY
133
A
GLY
134
n
137
GLY
134
A
GLY
135
n
138
GLY
135
A
ILE
136
n
139
ILE
136
A
PHE
137
n
140
PHE
137
A
SER
138
n
141
SER
138
A
ASN
139
n
142
ASN
139
A
GLY
140
n
143
GLY
140
A
GLU
141
n
144
GLU
141
A
LEU
142
n
145
LEU
142
A
VAL
143
n
146
VAL
143
A
ARG
144
n
147
ARG
144
A
GLY
145
n
148
GLY
145
A
GLY
146
n
149
GLY
146
A
ARG
147
n
150
ARG
147
A
PHE
148
n
151
PHE
148
A
ARG
149
n
152
ARG
149
A
ALA
150
n
153
ALA
150
A
GLY
151
n
154
GLY
151
A
GLU
152
n
155
GLU
152
A
PHE
153
n
156
PHE
153
A
GLY
154
n
157
GLY
154
A
TYR
155
n
158
TYR
155
A
MSE
156
n
159
MSE
156
A
PHE
157
n
160
PHE
157
A
SER
158
n
161
SER
158
A
GLU
159
n
162
GLU
159
A
ARG
160
n
163
ARG
160
A
PRO
161
n
164
PRO
161
A
GLY
162
n
165
GLY
162
A
ALA
163
n
166
ALA
163
A
PHE
164
n
167
PHE
164
A
ARG
165
n
168
ARG
165
A
PRO
166
n
169
PRO
166
A
GLY
167
n
170
GLY
167
A
LYS
168
n
171
LYS
168
A
TYR
169
n
172
TYR
169
A
THR
170
n
173
THR
170
A
LEU
171
n
174
LEU
171
A
ASN
172
n
175
ASN
172
A
GLU
173
n
176
GLU
173
A
THR
174
n
177
THR
174
A
THR
175
n
178
THR
175
A
THR
176
n
179
THR
176
A
MSE
177
n
180
MSE
177
A
LEU
178
n
181
LEU
178
A
VAL
179
n
182
VAL
179
A
LEU
180
n
183
LEU
180
A
ARG
181
n
184
ARG
181
A
ARG
182
n
185
ARG
182
A
GLN
183
n
186
GLN
183
A
TYR
184
n
187
TYR
184
A
ALA
185
n
188
ALA
185
A
GLU
186
n
189
GLU
186
A
LEU
187
n
190
LEU
187
A
THR
188
n
191
THR
188
A
GLY
189
n
192
GLY
189
A
ARG
190
n
193
ARG
190
A
PRO
191
n
194
PRO
191
A
LEU
192
n
195
LEU
192
A
GLU
193
n
196
GLU
193
A
GLU
194
n
197
GLU
194
A
ILE
195
n
198
ILE
195
A
THR
196
n
199
THR
196
A
GLY
197
n
200
GLY
197
A
GLU
198
n
201
GLU
198
A
GLU
199
n
202
GLU
199
A
ILE
200
n
203
ILE
200
A
PHE
201
n
204
PHE
201
A
ALA
202
n
205
ALA
202
A
ASN
203
n
206
ASN
203
A
TYR
204
n
207
TYR
204
A
ASP
205
n
208
ASP
205
A
ALA
206
n
209
ALA
206
A
HIS
207
n
210
HIS
207
A
ASP
208
n
211
ASP
208
A
ALA
209
n
212
ALA
209
A
VAL
210
n
213
VAL
210
A
SER
211
n
214
SER
211
A
GLU
212
n
215
GLU
212
A
ARG
213
n
216
ARG
213
A
LEU
214
n
217
LEU
214
A
ILE
215
n
218
ILE
215
A
THR
216
n
219
THR
216
A
GLU
217
n
220
GLU
217
A
PHE
218
n
221
PHE
218
A
TYR
219
n
222
TYR
219
A
THR
220
n
223
THR
220
A
GLY
221
n
224
GLY
221
A
ILE
222
n
225
ILE
222
A
CYS
223
n
226
CYS
223
A
THR
224
n
227
THR
224
A
GLY
225
n
228
GLY
225
A
LEU
226
n
229
LEU
226
A
TYR
227
n
230
TYR
227
A
ASN
228
n
231
ASN
228
A
LEU
229
n
232
LEU
229
A
ILE
230
n
233
ILE
230
A
TYR
231
n
234
TYR
231
A
LEU
232
n
235
LEU
232
A
PHE
233
n
236
PHE
233
A
ASP
234
n
237
ASP
234
A
PRO
235
n
238
PRO
235
A
THR
236
n
239
THR
236
A
HIS
237
n
240
HIS
237
A
ILE
238
n
241
ILE
238
A
PHE
239
n
242
PHE
239
A
ILE
240
n
243
ILE
240
A
GLY
241
n
244
GLY
241
A
GLY
242
n
245
GLY
242
A
GLY
243
n
246
GLY
243
A
ILE
244
n
247
ILE
244
A
THR
245
n
248
THR
245
A
SER
246
n
249
SER
246
A
ARG
247
n
250
ARG
247
A
PRO
248
n
251
PRO
248
A
THR
249
n
252
THR
249
A
PHE
250
n
253
PHE
250
A
ILE
251
n
254
ILE
251
A
ALA
252
n
255
ALA
252
A
GLU
253
n
256
GLU
253
A
LEU
254
n
257
LEU
254
A
LYS
255
n
258
LYS
255
A
HIS
256
n
259
HIS
256
A
HIS
257
n
260
HIS
257
A
MSE
258
n
261
MSE
258
A
GLU
259
n
262
GLU
259
A
SER
260
n
263
SER
260
A
PHE
261
n
264
PHE
261
A
GLY
262
n
265
GLY
262
A
LEU
263
n
266
LEU
263
A
ARG
264
n
267
ARG
264
A
ASP
265
n
268
ASP
265
A
THR
266
n
269
THR
266
A
ILE
267
n
270
ILE
267
A
ILE
268
n
271
ILE
268
A
GLU
269
n
272
GLU
269
A
THR
270
n
273
THR
270
A
ALA
271
n
274
ALA
271
A
THR
272
n
275
THR
272
A
HIS
273
n
276
HIS
273
A
LYS
274
n
277
LYS
274
A
ASN
275
n
278
ASN
275
A
GLN
276
n
279
GLN
276
A
ALA
277
n
280
ALA
277
A
GLY
278
n
281
GLY
278
A
LEU
279
n
282
LEU
279
A
LEU
280
n
283
LEU
280
A
GLY
281
n
284
GLY
281
A
ALA
282
n
285
ALA
282
A
VAL
283
n
286
VAL
283
A
TYR
284
n
287
TYR
284
A
HIS
285
n
288
HIS
285
A
PHE
286
n
289
PHE
286
A
LEU
287
n
290
LEU
287
A
GLN
288
n
291
GLN
288
A
GLU
289
n
292
GLU
289
A
GLU
290
n
293
GLU
290
A
ASN
291
n
294
ASN
291
A
n
295
292
A
n
296
293
A
n
297
294
A
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
3930
-6
23830
13120
-19
42390
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
15
SELENOMETHIONINE
A
MSE
18
MET
A
MSE
44
SELENOMETHIONINE
A
MSE
47
MET
A
MSE
74
SELENOMETHIONINE
A
MSE
77
MET
A
MSE
156
SELENOMETHIONINE
A
MSE
159
MET
A
MSE
177
SELENOMETHIONINE
A
MSE
180
MET
A
MSE
258
SELENOMETHIONINE
A
MSE
261
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z
crystal symmetry operation
87.6940000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
87.6940000000
121.9890000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
121.9890000000
0.0000000000
A
O
ALA
30
A
O
ALA
33
A
N
LEU
13
A
N
LEU
16
A
O
VAL
18
A
O
VAL
21
A
N
ILE
3
A
N
ILE
6
A
N
ALA
4
A
N
ALA
7
A
O
GLY
56
A
O
GLY
59
A
N
ALA
61
A
N
ALA
64
A
O
GLU
101
A
O
GLU
104
A
N
TYR
64
A
N
TYR
67
A
O
MSE
74
A
O
MSE
77
A
N
ILE
72
A
N
ILE
75
A
O
PHE
84
A
O
PHE
87
A
O
GLU
141
A
O
GLU
144
A
N
SER
138
A
N
SER
141
A
O
GLY
133
A
O
GLY
136
A
N
THR
127
A
N
THR
130
A
N
LEU
124
A
N
LEU
127
A
O
PHE
239
A
O
PHE
242
A
N
ILE
240
A
N
ILE
243
A
O
GLU
269
A
O
GLU
272
1
A
HOH
402
C
HOH
1
A
HOH
429
C
HOH
1
A
HOH
553
C
HOH
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
ARG
292
A
ARG
295
1
Y
1
A
HIS
293
A
HIS
296
1
Y
1
A
GLU
294
A
GLU
297
1
Y
1
A
A
OD1
O
ASN
HOH
203
668
2.14
B
1
A
SER
35
33.10
69.94
1
A
PHE
261
-123.19
-52.56
1
A
ASP
265
77.65
-8.33
92.970
29.3068
11.360
0.1000
0.0000
0.0000
0.3600
0.0000
-0.4700
0.9780
0.9670
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1686
0.1277
0.1298
0.1298
1.6400
36.0000
2509
49630
49630
5.1000
98.8700
1.000
0.260
2.5300
0.0390
RANDOM
1
THROUGHOUT
0.000
0
SAD
0.0730
0.0670
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.6400
36.0000
316
2557
4
0
2237
0.014
0.020
2425
0.001
0.020
1638
1.460
1.960
3308
0.980
3.000
4011
5.488
5.000
328
38.596
24.138
116
14.135
15.000
416
16.996
15.000
15
0.104
0.200
369
0.008
0.020
2775
0.001
0.020
516
3.819
3.000
4063
35.649
5.000
90
18.496
5.000
4222
0.4050
0.3010
1.6830
170
3035
3205
3205
20
90.3800
32.5
1.640
35.9
4HTL
49631
49631
0
0
0.087
4.171
1
16.200
7.400
99.400
0.605
1.640
1.670
2.10
2403
0.831
1
4.800
96.700
0.546
1.670
1.700
2418
0.855
1
5.700
98.300
0.473
1.700
1.730
2442
0.967
1
6.100
98.700
0.410
1.730
1.770
2448
1.051
1
6.400
98.700
0.354
1.770
1.810
2429
1.208
1
6.800
98.900
0.309
1.810
1.850
2477
1.401
1
7.200
99.400
0.261
1.850
1.890
2449
1.652
1
7.900
99.400
0.228
1.890
1.940
2469
1.911
1
8.000
99.600
0.201
1.940
2.000
2498
2.322
1
8.000
99.800
0.169
2.000
2.070
2459
2.806
1
8.000
100.000
0.147
2.070
2.140
2515
3.225
1
8.200
99.900
0.135
2.140
2.230
2461
3.781
1
8.100
100.000
0.123
2.230
2.330
2506
4.312
1
8.200
100.000
0.118
2.330
2.450
2482
4.792
1
8.200
100.000
0.105
2.450
2.600
2493
5.428
1
8.100
100.000
0.096
2.600
2.800
2507
6.199
1
8.000
100.000
0.085
2.800
3.090
2515
7.172
1
8.000
100.000
0.072
3.090
3.530
2529
7.958
1
7.700
100.000
0.062
3.530
4.450
2543
8.471
1
7.600
100.000
0.065
4.450
50.000
2588
12.091
1
7.500
98.200
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SHELXD
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
phasing
HKL-3000
Beta-glucoside kinase (E.C.2.7.1.85)
Lmo2764 protein, a putative N-acetylmannosamine kinase, from Listeria monocytogenes
1
N
N
2
N
N
3
N
N
dimer based on PISA
A
ASP
36
A
ASP
39
HELX_P
A
GLU
50
A
GLU
53
1
1
15
A
ILE
78
A
ILE
81
HELX_P
A
ASP
82
A
ASP
85
5
2
5
A
LEU
86
A
LEU
89
HELX_P
A
GLY
95
A
GLY
98
1
3
10
A
ASP
103
A
ASP
106
HELX_P
A
GLY
115
A
GLY
118
1
4
13
A
GLU
152
A
GLU
155
HELX_P
A
MSE
156
A
MSE
159
5
5
5
A
ARG
165
A
ARG
168
HELX_P
A
TYR
169
A
TYR
172
5
6
5
A
THR
170
A
THR
173
HELX_P
A
THR
175
A
THR
178
1
7
6
A
THR
176
A
THR
179
HELX_P
A
GLY
189
A
GLY
192
1
8
14
A
PRO
191
A
PRO
194
HELX_P
A
ILE
195
A
ILE
198
5
9
5
A
THR
196
A
THR
199
HELX_P
A
ALA
206
A
ALA
209
1
10
11
A
ASP
208
A
ASP
211
HELX_P
A
ASP
234
A
ASP
237
1
11
27
A
GLY
242
A
GLY
245
HELX_P
A
ARG
247
A
ARG
250
5
12
6
A
THR
249
A
THR
252
HELX_P
A
GLU
259
A
GLU
262
1
13
11
A
GLN
276
A
GLN
279
HELX_P
A
ASN
291
A
ASN
294
1
14
16
covale
1.332
A
MSE
1
A
C
MSE
4
1_555
A
LYS
2
A
N
LYS
5
1_555
covale
1.330
A
LYS
14
A
C
LYS
17
1_555
A
MSE
15
A
N
MSE
18
1_555
covale
1.329
A
MSE
15
A
C
MSE
18
1_555
A
GLY
16
A
N
GLY
19
1_555
covale
1.329
A
GLU
43
A
C
GLU
46
1_555
A
MSE
44
A
N
MSE
47
1_555
covale
1.336
A
MSE
44
A
C
MSE
47
1_555
A
LYS
45
A
N
LYS
48
1_555
covale
1.326
A
THR
73
A
C
THR
76
1_555
A
MSE
74
A
N
MSE
77
1_555
covale
1.321
A
MSE
74
A
C
MSE
77
1_555
A
GLY
75
A
N
GLY
78
1_555
covale
1.336
A
TYR
155
A
C
TYR
158
1_555
A
MSE
156
A
N
MSE
159
1_555
covale
1.316
A
MSE
156
A
C
MSE
159
1_555
A
PHE
157
A
N
PHE
160
1_555
covale
1.329
A
THR
176
A
C
THR
179
1_555
A
MSE
177
A
N
MSE
180
1_555
covale
1.337
A
MSE
177
A
C
MSE
180
1_555
A
LEU
178
A
N
LEU
181
1_555
covale
1.338
A
HIS
257
A
C
HIS
260
1_555
A
MSE
258
A
N
MSE
261
1_555
covale
1.316
A
MSE
258
A
C
MSE
261
1_555
A
GLU
259
A
N
GLU
262
1_555
TRANSFERASE
structural genomics, sugar kinase, ROK family, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSFERASE
BGLK_LISMO
UNP
1
1
Q8Y3R9
MKIAAFDIGGTALKMGVVLPHGEIILTKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRR
FDNFNLKEWLEAETGLPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGIGGGIFSNGELVRGGRFRAGEFGYMFSER
PGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFDPTHIFI
GGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQEENRHE
1
294
4HTL
1
294
Q8Y3R9
A
1
4
297
1
EXPRESSION TAG
SER
-2
4HTL
A
Q8Y3R9
UNP
1
1
EXPRESSION TAG
ASN
-1
4HTL
A
Q8Y3R9
UNP
2
1
EXPRESSION TAG
ALA
0
4HTL
A
Q8Y3R9
UNP
3
5
3
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
24
A
ILE
27
A
GLU
31
A
GLU
34
A
ALA
12
A
ALA
15
A
VAL
18
A
VAL
21
A
ILE
3
A
ILE
6
A
ILE
8
A
ILE
11
A
GLY
56
A
GLY
59
A
ALA
61
A
ALA
64
A
VAL
98
A
VAL
101
A
ASN
102
A
ASN
105
A
TYR
64
A
TYR
67
A
VAL
65
A
VAL
68
A
LEU
71
A
LEU
74
A
MSE
74
A
MSE
77
A
PHE
84
A
PHE
87
A
ASN
85
A
ASN
88
A
GLU
141
A
GLU
144
A
LEU
142
A
LEU
145
A
ILE
132
A
ILE
135
A
SER
138
A
SER
141
A
PHE
123
A
PHE
126
A
ILE
128
A
ILE
131
A
HIS
237
A
HIS
240
A
GLY
241
A
GLY
244
A
ILE
267
A
ILE
270
A
THR
270
A
THR
273
BINDING SITE FOR RESIDUE EDO A 301
Software
1
A
ARG
147
A
ARG
150
1
1_555
22
F 2 2 2