0.008739 0.000000 0.003916 -0.000000 0.036182 0.000000 0.000000 -0.000000 0.016117 0.00000 0.00000 0.00000 Both, D. Steiner, E. Lindqvist, Y. Schnell, R. Schneider, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 114.14 90.00 114.433 27.638 67.990 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N S N 291 N O N 292 N O N 293 N O N 294 N O N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N N Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 69 432 441 10.1107/S0907444912049268 23519418 Structure of LdtMt2, an L,D-transpeptidase from Mycobacterium tuberculosis. 2013 10.2210/pdb4hu2/pdb pdb_00004hu2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-01-09 ADSC QUANTUM 210 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9334 1.0 ID14-1 ESRF 0.9334 SYNCHROTRON ESRF BEAMLINE ID14-1 21048.533 PROBABLE CONSERVED LIPOPROTEIN LPPS A and B domain residues 55-250 1 man polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 309 nat water no no SMADLLVPKLTASVTDGAVGVTVDAPVSVTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALG LGGAATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRP EHFWKPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIG SMADLLVPKLTASVTDGAVGVTVDAPVSVTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALG LGGAATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRP EHFWKPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n N-terminal His-tag sample H37Rv, lppS, MT2594, Rv2518c 1773 Mycobacterium tuberculosis 469008 Escherichia coli BL21(DE3) plasmid pNIC28Bsa4 1 2.24 45.15 VAPOR DIFFUSION, SITTING DROP 6.5 25% (w/v) PEG 3350, 0.2 M (NH4)2SO4, 0.1 M Bis-TRIS propane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 reflns reflns_shell struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Database references Data collection Database references Data collection Database references Derived calculations 1 0 2012-12-12 1 1 2013-05-15 1 2 2020-02-26 1 3 2024-02-28 _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-11-02 REL REL SO4 SULFATE ION HOH water SO4 1 2 SO4 SO4 301 A SO4 2 2 SO4 SO4 302 A HOH 1 3 HOH HOH 401 A HOH 2 3 HOH HOH 402 A HOH 3 3 HOH HOH 403 A HOH 4 3 HOH HOH 404 A HOH 5 3 HOH HOH 405 A HOH 6 3 HOH HOH 406 A HOH 7 3 HOH HOH 407 A HOH 8 3 HOH HOH 408 A HOH 9 3 HOH HOH 409 A HOH 10 3 HOH HOH 410 A HOH 11 3 HOH HOH 411 A HOH 12 3 HOH HOH 412 A HOH 13 3 HOH HOH 413 A HOH 14 3 HOH HOH 414 A HOH 15 3 HOH HOH 415 A HOH 16 3 HOH HOH 416 A HOH 17 3 HOH HOH 417 A HOH 18 3 HOH HOH 418 A HOH 19 3 HOH HOH 419 A HOH 20 3 HOH HOH 420 A HOH 21 3 HOH HOH 421 A HOH 22 3 HOH HOH 422 A HOH 23 3 HOH HOH 423 A HOH 24 3 HOH HOH 424 A HOH 25 3 HOH HOH 425 A HOH 26 3 HOH HOH 426 A HOH 27 3 HOH HOH 427 A HOH 28 3 HOH HOH 428 A HOH 29 3 HOH HOH 429 A HOH 30 3 HOH HOH 430 A HOH 31 3 HOH HOH 431 A HOH 32 3 HOH HOH 432 A HOH 33 3 HOH HOH 433 A HOH 34 3 HOH HOH 434 A HOH 35 3 HOH HOH 435 A HOH 36 3 HOH HOH 436 A HOH 37 3 HOH HOH 437 A HOH 38 3 HOH HOH 438 A HOH 39 3 HOH HOH 439 A HOH 40 3 HOH HOH 440 A HOH 41 3 HOH HOH 441 A HOH 42 3 HOH HOH 442 A HOH 43 3 HOH HOH 443 A HOH 44 3 HOH HOH 444 A HOH 45 3 HOH HOH 445 A HOH 46 3 HOH HOH 446 A HOH 47 3 HOH HOH 447 A HOH 48 3 HOH HOH 448 A HOH 49 3 HOH HOH 449 A HOH 50 3 HOH HOH 450 A HOH 51 3 HOH HOH 451 A HOH 52 3 HOH HOH 452 A HOH 53 3 HOH HOH 453 A HOH 54 3 HOH HOH 454 A HOH 55 3 HOH HOH 455 A HOH 56 3 HOH HOH 456 A HOH 57 3 HOH HOH 457 A HOH 58 3 HOH HOH 458 A HOH 59 3 HOH HOH 459 A HOH 60 3 HOH HOH 460 A HOH 61 3 HOH HOH 461 A HOH 62 3 HOH HOH 462 A HOH 63 3 HOH HOH 463 A HOH 64 3 HOH HOH 464 A HOH 65 3 HOH HOH 465 A HOH 66 3 HOH HOH 466 A HOH 67 3 HOH HOH 467 A HOH 68 3 HOH HOH 468 A HOH 69 3 HOH HOH 469 A HOH 70 3 HOH HOH 470 A HOH 71 3 HOH HOH 471 A HOH 72 3 HOH HOH 472 A HOH 73 3 HOH HOH 473 A HOH 74 3 HOH HOH 474 A HOH 75 3 HOH HOH 475 A HOH 76 3 HOH HOH 476 A HOH 77 3 HOH HOH 477 A HOH 78 3 HOH HOH 478 A HOH 79 3 HOH HOH 479 A HOH 81 3 HOH HOH 480 A HOH 82 3 HOH HOH 481 A HOH 83 3 HOH HOH 482 A HOH 84 3 HOH HOH 483 A HOH 85 3 HOH HOH 484 A HOH 86 3 HOH HOH 485 A HOH 87 3 HOH HOH 486 A HOH 88 3 HOH HOH 487 A HOH 89 3 HOH HOH 488 A HOH 90 3 HOH HOH 489 A HOH 91 3 HOH HOH 490 A HOH 92 3 HOH HOH 491 A HOH 93 3 HOH HOH 492 A HOH 94 3 HOH HOH 493 A HOH 95 3 HOH HOH 494 A HOH 96 3 HOH HOH 495 A HOH 97 3 HOH HOH 496 A HOH 98 3 HOH HOH 497 A HOH 99 3 HOH HOH 498 A HOH 100 3 HOH HOH 499 A HOH 101 3 HOH HOH 500 A HOH 102 3 HOH HOH 501 A HOH 103 3 HOH HOH 502 A HOH 104 3 HOH HOH 503 A HOH 105 3 HOH HOH 504 A HOH 106 3 HOH HOH 505 A HOH 107 3 HOH HOH 506 A HOH 108 3 HOH HOH 507 A HOH 109 3 HOH HOH 508 A HOH 110 3 HOH HOH 509 A HOH 111 3 HOH HOH 510 A HOH 112 3 HOH HOH 511 A HOH 113 3 HOH HOH 512 A HOH 114 3 HOH HOH 513 A HOH 115 3 HOH HOH 514 A HOH 116 3 HOH HOH 515 A HOH 117 3 HOH HOH 516 A HOH 118 3 HOH HOH 517 A HOH 119 3 HOH HOH 518 A HOH 120 3 HOH HOH 519 A HOH 121 3 HOH HOH 520 A HOH 122 3 HOH HOH 521 A HOH 123 3 HOH HOH 522 A HOH 124 3 HOH HOH 523 A HOH 125 3 HOH HOH 524 A HOH 126 3 HOH HOH 525 A HOH 127 3 HOH HOH 526 A HOH 128 3 HOH HOH 527 A HOH 129 3 HOH HOH 528 A HOH 130 3 HOH HOH 529 A HOH 131 3 HOH HOH 530 A HOH 132 3 HOH HOH 531 A HOH 133 3 HOH HOH 532 A HOH 134 3 HOH HOH 533 A HOH 135 3 HOH HOH 534 A HOH 136 3 HOH HOH 535 A HOH 137 3 HOH HOH 536 A HOH 138 3 HOH HOH 537 A HOH 139 3 HOH HOH 538 A HOH 140 3 HOH HOH 539 A HOH 141 3 HOH HOH 540 A HOH 142 3 HOH HOH 541 A HOH 143 3 HOH HOH 542 A HOH 144 3 HOH HOH 543 A HOH 145 3 HOH HOH 544 A HOH 146 3 HOH HOH 545 A HOH 147 3 HOH HOH 546 A HOH 148 3 HOH HOH 547 A HOH 149 3 HOH HOH 548 A HOH 150 3 HOH HOH 549 A HOH 151 3 HOH HOH 550 A HOH 152 3 HOH HOH 551 A HOH 153 3 HOH HOH 552 A HOH 154 3 HOH HOH 553 A HOH 155 3 HOH HOH 554 A HOH 156 3 HOH HOH 555 A HOH 157 3 HOH HOH 556 A HOH 158 3 HOH HOH 557 A HOH 160 3 HOH HOH 558 A HOH 161 3 HOH HOH 559 A HOH 162 3 HOH HOH 560 A HOH 163 3 HOH HOH 561 A HOH 164 3 HOH HOH 562 A HOH 165 3 HOH HOH 563 A HOH 166 3 HOH HOH 564 A HOH 167 3 HOH HOH 565 A HOH 168 3 HOH HOH 566 A HOH 169 3 HOH HOH 567 A HOH 170 3 HOH HOH 568 A HOH 171 3 HOH HOH 569 A HOH 172 3 HOH HOH 570 A HOH 173 3 HOH HOH 571 A HOH 174 3 HOH HOH 572 A HOH 175 3 HOH HOH 573 A HOH 176 3 HOH HOH 574 A HOH 177 3 HOH HOH 575 A HOH 178 3 HOH HOH 576 A HOH 179 3 HOH HOH 577 A HOH 180 3 HOH HOH 578 A HOH 181 3 HOH HOH 579 A HOH 182 3 HOH HOH 580 A HOH 184 3 HOH HOH 581 A HOH 185 3 HOH HOH 582 A HOH 186 3 HOH HOH 583 A HOH 187 3 HOH HOH 584 A HOH 189 3 HOH HOH 585 A HOH 190 3 HOH HOH 586 A HOH 192 3 HOH HOH 587 A HOH 193 3 HOH HOH 588 A HOH 194 3 HOH HOH 589 A HOH 195 3 HOH HOH 590 A HOH 196 3 HOH HOH 591 A HOH 197 3 HOH HOH 592 A HOH 198 3 HOH HOH 593 A HOH 199 3 HOH HOH 594 A HOH 200 3 HOH HOH 595 A HOH 201 3 HOH HOH 596 A HOH 202 3 HOH HOH 597 A HOH 203 3 HOH HOH 598 A HOH 204 3 HOH HOH 599 A HOH 205 3 HOH HOH 600 A HOH 206 3 HOH HOH 601 A HOH 207 3 HOH HOH 602 A HOH 208 3 HOH HOH 603 A HOH 209 3 HOH HOH 604 A HOH 210 3 HOH HOH 605 A HOH 211 3 HOH HOH 606 A HOH 212 3 HOH HOH 607 A HOH 213 3 HOH HOH 608 A HOH 214 3 HOH HOH 609 A HOH 215 3 HOH HOH 610 A HOH 216 3 HOH HOH 611 A HOH 217 3 HOH HOH 612 A HOH 218 3 HOH HOH 613 A HOH 219 3 HOH HOH 614 A HOH 220 3 HOH HOH 615 A HOH 222 3 HOH HOH 616 A HOH 223 3 HOH HOH 617 A HOH 224 3 HOH HOH 618 A HOH 225 3 HOH HOH 619 A HOH 226 3 HOH HOH 620 A HOH 227 3 HOH HOH 621 A HOH 228 3 HOH HOH 622 A HOH 229 3 HOH HOH 623 A HOH 230 3 HOH HOH 624 A HOH 231 3 HOH HOH 625 A HOH 232 3 HOH HOH 626 A HOH 233 3 HOH HOH 627 A HOH 234 3 HOH HOH 628 A HOH 235 3 HOH HOH 629 A HOH 236 3 HOH HOH 630 A HOH 237 3 HOH HOH 631 A HOH 238 3 HOH HOH 632 A HOH 239 3 HOH HOH 633 A HOH 240 3 HOH HOH 634 A HOH 241 3 HOH HOH 635 A HOH 242 3 HOH HOH 636 A HOH 243 3 HOH HOH 637 A HOH 244 3 HOH HOH 638 A HOH 245 3 HOH HOH 639 A HOH 246 3 HOH HOH 640 A HOH 247 3 HOH HOH 641 A HOH 248 3 HOH HOH 642 A HOH 249 3 HOH HOH 643 A HOH 250 3 HOH HOH 644 A HOH 251 3 HOH HOH 645 A HOH 252 3 HOH HOH 646 A HOH 253 3 HOH HOH 647 A HOH 254 3 HOH HOH 648 A HOH 255 3 HOH HOH 649 A HOH 256 3 HOH HOH 650 A HOH 257 3 HOH HOH 651 A HOH 258 3 HOH HOH 652 A HOH 259 3 HOH HOH 653 A HOH 260 3 HOH HOH 654 A HOH 261 3 HOH HOH 655 A HOH 262 3 HOH HOH 656 A HOH 263 3 HOH HOH 657 A HOH 264 3 HOH HOH 658 A HOH 265 3 HOH HOH 659 A HOH 266 3 HOH HOH 660 A HOH 267 3 HOH HOH 661 A HOH 268 3 HOH HOH 662 A HOH 269 3 HOH HOH 663 A HOH 270 3 HOH HOH 664 A HOH 271 3 HOH HOH 665 A HOH 272 3 HOH HOH 666 A HOH 273 3 HOH HOH 667 A HOH 274 3 HOH HOH 668 A HOH 275 3 HOH HOH 669 A HOH 276 3 HOH HOH 670 A HOH 277 3 HOH HOH 671 A HOH 278 3 HOH HOH 672 A HOH 279 3 HOH HOH 673 A HOH 280 3 HOH HOH 674 A HOH 281 3 HOH HOH 675 A HOH 282 3 HOH HOH 676 A HOH 283 3 HOH HOH 677 A HOH 284 3 HOH HOH 678 A HOH 285 3 HOH HOH 679 A HOH 286 3 HOH HOH 680 A HOH 287 3 HOH HOH 681 A HOH 288 3 HOH HOH 682 A HOH 289 3 HOH HOH 683 A HOH 290 3 HOH HOH 684 A HOH 291 3 HOH HOH 685 A HOH 292 3 HOH HOH 686 A HOH 293 3 HOH HOH 687 A HOH 294 3 HOH HOH 688 A HOH 295 3 HOH HOH 689 A HOH 296 3 HOH HOH 690 A HOH 297 3 HOH HOH 691 A HOH 298 3 HOH HOH 692 A HOH 299 3 HOH HOH 693 A HOH 300 3 HOH HOH 694 A HOH 301 3 HOH HOH 695 A HOH 302 3 HOH HOH 696 A HOH 303 3 HOH HOH 697 A HOH 304 3 HOH HOH 698 A HOH 305 3 HOH HOH 699 A HOH 306 3 HOH HOH 700 A HOH 307 3 HOH HOH 701 A HOH 309 3 HOH HOH 702 A HOH 310 3 HOH HOH 703 A HOH 311 3 HOH HOH 704 A HOH 312 3 HOH HOH 705 A HOH 313 3 HOH HOH 706 A HOH 314 3 HOH HOH 707 A HOH 315 3 HOH HOH 708 A HOH 316 3 HOH HOH 709 A n 1 53 A n 2 54 A n 3 55 A n 4 56 A LEU 57 n 5 LEU 57 A LEU 58 n 6 LEU 58 A VAL 59 n 7 VAL 59 A PRO 60 n 8 PRO 60 A LYS 61 n 9 LYS 61 A LEU 62 n 10 LEU 62 A THR 63 n 11 THR 63 A ALA 64 n 12 ALA 64 A SER 65 n 13 SER 65 A VAL 66 n 14 VAL 66 A THR 67 n 15 THR 67 A ASP 68 n 16 ASP 68 A GLY 69 n 17 GLY 69 A ALA 70 n 18 ALA 70 A VAL 71 n 19 VAL 71 A GLY 72 n 20 GLY 72 A VAL 73 n 21 VAL 73 A THR 74 n 22 THR 74 A VAL 75 n 23 VAL 75 A ASP 76 n 24 ASP 76 A ALA 77 n 25 ALA 77 A PRO 78 n 26 PRO 78 A VAL 79 n 27 VAL 79 A SER 80 n 28 SER 80 A VAL 81 n 29 VAL 81 A THR 82 n 30 THR 82 A ALA 83 n 31 ALA 83 A ALA 84 n 32 ALA 84 A ASP 85 n 33 ASP 85 A GLY 86 n 34 GLY 86 A VAL 87 n 35 VAL 87 A LEU 88 n 36 LEU 88 A ALA 89 n 37 ALA 89 A ALA 90 n 38 ALA 90 A VAL 91 n 39 VAL 91 A THR 92 n 40 THR 92 A MET 93 n 41 MET 93 A VAL 94 n 42 VAL 94 A ASN 95 n 43 ASN 95 A ASP 96 n 44 ASP 96 A ASN 97 n 45 ASN 97 A GLY 98 n 46 GLY 98 A ARG 99 n 47 ARG 99 A PRO 100 n 48 PRO 100 A VAL 101 n 49 VAL 101 A ALA 102 n 50 ALA 102 A GLY 103 n 51 GLY 103 A ARG 104 n 52 ARG 104 A LEU 105 n 53 LEU 105 A SER 106 n 54 SER 106 A PRO 107 n 55 PRO 107 A ASP 108 n 56 ASP 108 A GLY 109 n 57 GLY 109 A LEU 110 n 58 LEU 110 A ARG 111 n 59 ARG 111 A TRP 112 n 60 TRP 112 A SER 113 n 61 SER 113 A THR 114 n 62 THR 114 A THR 115 n 63 THR 115 A GLU 116 n 64 GLU 116 A GLN 117 n 65 GLN 117 A LEU 118 n 66 LEU 118 A GLY 119 n 67 GLY 119 A TYR 120 n 68 TYR 120 A ASN 121 n 69 ASN 121 A ARG 122 n 70 ARG 122 A ARG 123 n 71 ARG 123 A TYR 124 n 72 TYR 124 A THR 125 n 73 THR 125 A LEU 126 n 74 LEU 126 A ASN 127 n 75 ASN 127 A ALA 128 n 76 ALA 128 A THR 129 n 77 THR 129 A ALA 130 n 78 ALA 130 A LEU 131 n 79 LEU 131 A GLY 132 n 80 GLY 132 A LEU 133 n 81 LEU 133 A GLY 134 n 82 GLY 134 A GLY 135 n 83 GLY 135 A ALA 136 n 84 ALA 136 A ALA 137 n 85 ALA 137 A THR 138 n 86 THR 138 A ARG 139 n 87 ARG 139 A GLN 140 n 88 GLN 140 A LEU 141 n 89 LEU 141 A THR 142 n 90 THR 142 A PHE 143 n 91 PHE 143 A GLN 144 n 92 GLN 144 A THR 145 n 93 THR 145 A SER 146 n 94 SER 146 A SER 147 n 95 SER 147 A PRO 148 n 96 PRO 148 A ALA 149 n 97 ALA 149 A HIS 150 n 98 HIS 150 A LEU 151 n 99 LEU 151 A THR 152 n 100 THR 152 A MET 153 n 101 MET 153 A PRO 154 n 102 PRO 154 A TYR 155 n 103 TYR 155 A VAL 156 n 104 VAL 156 A MET 157 n 105 MET 157 A PRO 158 n 106 PRO 158 A GLY 159 n 107 GLY 159 A ASP 160 n 108 ASP 160 A GLY 161 n 109 GLY 161 A GLU 162 n 110 GLU 162 A VAL 163 n 111 VAL 163 A VAL 164 n 112 VAL 164 A GLY 165 n 113 GLY 165 A VAL 166 n 114 VAL 166 A GLY 167 n 115 GLY 167 A GLU 168 n 116 GLU 168 A PRO 169 n 117 PRO 169 A VAL 170 n 118 VAL 170 A ALA 171 n 119 ALA 171 A ILE 172 n 120 ILE 172 A ARG 173 n 121 ARG 173 A PHE 174 n 122 PHE 174 A ASP 175 n 123 ASP 175 A GLU 176 n 124 GLU 176 A ASN 177 n 125 ASN 177 A ILE 178 n 126 ILE 178 A ALA 179 n 127 ALA 179 A ASP 180 n 128 ASP 180 A ARG 181 n 129 ARG 181 A GLY 182 n 130 GLY 182 A ALA 183 n 131 ALA 183 A ALA 184 n 132 ALA 184 A GLU 185 n 133 GLU 185 A LYS 186 n 134 LYS 186 A ALA 187 n 135 ALA 187 A ILE 188 n 136 ILE 188 A LYS 189 n 137 LYS 189 A ILE 190 n 138 ILE 190 A THR 191 n 139 THR 191 A THR 192 n 140 THR 192 A ASN 193 n 141 ASN 193 A PRO 194 n 142 PRO 194 A PRO 195 n 143 PRO 195 A VAL 196 n 144 VAL 196 A GLU 197 n 145 GLU 197 A GLY 198 n 146 GLY 198 A ALA 199 n 147 ALA 199 A PHE 200 n 148 PHE 200 A TYR 201 n 149 TYR 201 A TRP 202 n 150 TRP 202 A LEU 203 n 151 LEU 203 A ASN 204 n 152 ASN 204 A ASN 205 n 153 ASN 205 A ARG 206 n 154 ARG 206 A GLU 207 n 155 GLU 207 A VAL 208 n 156 VAL 208 A ARG 209 n 157 ARG 209 A TRP 210 n 158 TRP 210 A ARG 211 n 159 ARG 211 A PRO 212 n 160 PRO 212 A GLU 213 n 161 GLU 213 A HIS 214 n 162 HIS 214 A PHE 215 n 163 PHE 215 A TRP 216 n 164 TRP 216 A LYS 217 n 165 LYS 217 A PRO 218 n 166 PRO 218 A GLY 219 n 167 GLY 219 A THR 220 n 168 THR 220 A ALA 221 n 169 ALA 221 A VAL 222 n 170 VAL 222 A ASP 223 n 171 ASP 223 A VAL 224 n 172 VAL 224 A ALA 225 n 173 ALA 225 A VAL 226 n 174 VAL 226 A ASN 227 n 175 ASN 227 A THR 228 n 176 THR 228 A TYR 229 n 177 TYR 229 A GLY 230 n 178 GLY 230 A VAL 231 n 179 VAL 231 A ASP 232 n 180 ASP 232 A LEU 233 n 181 LEU 233 A GLY 234 n 182 GLY 234 A GLU 235 n 183 GLU 235 A GLY 236 n 184 GLY 236 A MET 237 n 185 MET 237 A PHE 238 n 186 PHE 238 A GLY 239 n 187 GLY 239 A GLU 240 n 188 GLU 240 A ASP 241 n 189 ASP 241 A ASN 242 n 190 ASN 242 A VAL 243 n 191 VAL 243 A GLN 244 n 192 GLN 244 A THR 245 n 193 THR 245 A HIS 246 n 194 HIS 246 A PHE 247 n 195 PHE 247 A THR 248 n 196 THR 248 A ILE 249 n 197 ILE 249 A GLY 250 n 198 GLY 250 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 63 A N THR 11 A O THR 82 A O THR 30 A N VAL 81 A N VAL 29 A O TRP 112 A O TRP 60 A O SER 113 A O SER 61 A N ARG 104 A N ARG 52 A N ALA 89 A N ALA 37 A O THR 129 A O THR 77 A N LEU 126 A N LEU 74 A O LEU 141 A O LEU 89 A N HIS 150 A N HIS 98 A O PHE 238 A O PHE 186 A N MET 157 A N MET 105 A O ALA 171 A O ALA 119 A N ILE 172 A N ILE 120 A O VAL 208 A O VAL 156 A O ARG 209 A O ARG 157 A N TYR 201 A N TYR 149 A N VAL 164 A N VAL 112 A O THR 248 A O THR 196 A O VAL 243 A O VAL 191 A N VAL 226 A N VAL 174 A O ALA 221 A O ALA 169 A N ASN 193 A N ASN 141 1 A HOH 466 D HOH 1 A HOH 704 D HOH 1 A SER 53 A SER 1 1 Y 1 A MET 54 A MET 2 1 Y 1 A ALA 55 A ALA 3 1 Y 1 A ASP 56 A ASP 4 1 Y 1 10.85 1.60 100.20 111.05 A A A CG SD CE MET MET MET 153 153 153 N 1 A ASN 204 -171.41 -169.36 1 A HIS 214 A -127.43 -117.88 1 A HIS 214 B -127.01 -117.09 1 A ASN 227 -107.18 61.81 16.550 0.02 0.00 -0.22 0.28 0.00 -0.47 0.970 0.950 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21813 0.16239 0.16525 1.46 33.7 1728 32519 32519 5.0 98.85 3.011 0.052 RANDOM 1 THROUGHOUT 2.8 2.8 MOLECULAR REPLACEMENT 0.081 0.077 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 0.077 0.081 1.46 33.7 309 1774 10 0 1455 0.009 0.020 1548 0.001 0.020 996 1.440 1.949 2132 0.928 3.000 2432 5.659 5.000 207 34.598 23.676 68 11.252 15.000 224 16.443 15.000 12 0.082 0.200 245 0.006 0.021 1784 0.001 0.020 320 3.062 3.000 2544 31.242 5.000 99 10.183 5.000 2715 0.218 0.1653 1.493 1728 2000 32519 20 98.9 0.319 0.273 1.53 117 4636 20 94.1 1.46 33.7 4HU2 34254 34254 2.8 2.8 0.038 1 98.9 0.489 1.456 1.493 2.8 34254 0.489 1 2 98.9 data collection DNA phasing PHASER refinement REFMAC 5.6.0117 data reduction XDS data scaling SCALA Crystal structure of LdtMt2, a L,D-transpeptidase from Mycobacterium tuberculosis: domain A and B 1 N N 2 N N 2 N N 3 N N A ASP 180 A ASP 128 HELX_P A ALA 187 A ALA 135 1 1 8 UNKNOWN FUNCTION Cell-wall, transpeptidase, Immunoglobuline-fold, peptidoglycan, UNKNOWN FUNCTION A MET 157 A MET 105 1 A PRO 158 A PRO 106 -5.88 A ASN 193 A ASN 141 1 A PRO 194 A PRO 142 1.20 O53223_MYCTU UNP 1 55 O53223 ADLLVPKLTASVTDGAVGVTVDAPVSVTAADGVLAAVTMVNDNGRPVAGRLSPDGLRWSTTEQLGYNRRYTLNATALGLG GAATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIRFDENIADRGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEH FWKPGTAVDVAVNTYGVDLGEGMFGEDNVQTHFTIG 55 250 4HU2 55 250 O53223 A 1 3 198 1 expression tag SER 53 4HU2 A O53223 UNP 1 1 expression tag MET 54 4HU2 A O53223 UNP 2 4 3 2 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A LYS 61 A LYS 9 A ALA 64 A ALA 12 A SER 80 A SER 28 A ALA 84 A ALA 32 A ARG 111 A ARG 59 A THR 114 A THR 62 A GLY 103 A GLY 51 A LEU 105 A LEU 53 A VAL 87 A VAL 35 A VAL 94 A VAL 42 A ARG 123 A ARG 71 A GLY 132 A GLY 80 A GLY 135 A GLY 83 A GLN 144 A GLN 92 A HIS 150 A HIS 98 A THR 152 A THR 100 A MET 237 A MET 185 A GLY 239 A GLY 187 A PRO 154 A PRO 102 A MET 157 A MET 105 A VAL 170 A VAL 118 A PHE 174 A PHE 122 A GLU 207 A GLU 155 A PRO 212 A PRO 160 A GLY 198 A GLY 146 A TRP 202 A TRP 150 A VAL 163 A VAL 111 A VAL 164 A VAL 112 A VAL 243 A VAL 191 A ILE 249 A ILE 197 A THR 220 A THR 168 A VAL 226 A VAL 174 A ILE 188 A ILE 136 A ASN 193 A ASN 141 BINDING SITE FOR RESIDUE SO4 A 301 A SO4 301 Software 8 BINDING SITE FOR RESIDUE SO4 A 302 A SO4 302 Software 9 A ASN 177 A ASN 125 8 4_454 A TYR 201 A TYR 149 8 1_555 A ARG 206 A ARG 154 8 4_454 A ARG 209 A ARG 157 8 1_555 A ARG 211 A ARG 159 8 1_555 A HOH 427 D HOH 8 4_454 A HOH 568 D HOH 8 4_454 A HOH 580 D HOH 8 1_555 A ASN 95 A ASN 43 9 1_555 A ASN 97 A ASN 45 9 1_555 A ARG 99 A ARG 47 9 1_555 A ARG 111 A ARG 59 9 1_545 A ARG 122 A ARG 70 9 1_555 A HOH 454 D HOH 9 1_545 A HOH 586 D HOH 9 1_555 A HOH 660 D HOH 9 1_555 A HOH 679 D HOH 9 1_555 5 C 1 2 1