0.010831 0.000000 0.006959 0.000000 0.008977 0.000000 0.000000 0.000000 0.020493 0.00000 0.00000 0.00000 Gras, S. Twist, K.A. Rossjohn, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 122.72 90.00 92.330 111.390 58.000 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 5570 5575 10.1073/pnas.1302935110 23493558 Preemptive priming readily overcomes structure-based mechanisms of virus escape. 2013 100 1 CCD 2011-07-29 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.939 1.0 MX2 Australian Synchrotron 0.939 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 32403.041 H-2 class I histocompatibility antigen, D-B alpha chain H155A 1 man polymer 11660.350 Beta-2-microglobulin 1 man polymer 1026.099 NP peptide 1 syn polymer 92.094 GLYCEROL 2 syn non-polymer 59.044 ACETATE ION 1 syn non-polymer 18.015 water 172 nat water H-2D(B) no no GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEAYKAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEAYKAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST A polypeptide(L) no no IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHASMAEPKTVYWDRDM IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHASMAEPKTVYWDRDM B polypeptide(L) no no ASNENMETM ASNENMETM C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample H2-D1 10090 Mus musculus 469008 Escherichia coli BL21(DE3) plasmid pET mouse sample B2m 10090 Mus musculus 469008 Escherichia coli BL21(DE3) plasmid pET 1 2.78 55.80 VAPOR DIFFUSION, HANGING DROP 8.5 0.1M Tris HCl, 0.2M LiSO4, 25-30% PEG 8000, pH 8.5, vapor diffusion, hanging drop, temperature 298K 298 pdbx_unobs_or_zero_occ_atoms software repository Initial release Database references Database references Advisory Refinement description 1 0 2013-02-27 1 1 2013-03-27 1 2 2013-04-24 1 3 2017-11-15 _software.name RCSB Y RCSB 2012-11-05 REL REL GOL GLYCEROL ACT ACETATE ION HOH water GOL 1 4 GOL GOL 301 A GOL 2 4 GOL GOL 302 A ACT 2 5 ACT ACT 101 B HOH 2 6 HOH HOH 401 A HOH 4 6 HOH HOH 402 A HOH 5 6 HOH HOH 403 A HOH 6 6 HOH HOH 404 A HOH 8 6 HOH HOH 405 A HOH 10 6 HOH HOH 406 A HOH 14 6 HOH HOH 407 A HOH 15 6 HOH HOH 408 A HOH 16 6 HOH HOH 409 A HOH 18 6 HOH HOH 410 A HOH 20 6 HOH HOH 411 A HOH 24 6 HOH HOH 412 A HOH 25 6 HOH HOH 413 A HOH 26 6 HOH HOH 414 A HOH 30 6 HOH HOH 415 A HOH 34 6 HOH HOH 416 A HOH 35 6 HOH HOH 417 A HOH 36 6 HOH HOH 418 A HOH 37 6 HOH HOH 419 A HOH 43 6 HOH HOH 420 A HOH 44 6 HOH HOH 421 A HOH 47 6 HOH HOH 422 A HOH 51 6 HOH HOH 423 A HOH 52 6 HOH HOH 424 A HOH 55 6 HOH HOH 425 A HOH 57 6 HOH HOH 426 A HOH 61 6 HOH HOH 427 A HOH 66 6 HOH HOH 428 A HOH 69 6 HOH HOH 429 A HOH 71 6 HOH HOH 430 A HOH 76 6 HOH HOH 431 A HOH 77 6 HOH HOH 432 A HOH 81 6 HOH HOH 433 A HOH 82 6 HOH HOH 434 A HOH 83 6 HOH HOH 435 A HOH 85 6 HOH HOH 436 A HOH 86 6 HOH HOH 437 A HOH 89 6 HOH HOH 438 A HOH 95 6 HOH HOH 439 A HOH 96 6 HOH HOH 440 A HOH 98 6 HOH HOH 441 A HOH 99 6 HOH HOH 442 A HOH 103 6 HOH HOH 443 A HOH 105 6 HOH HOH 444 A HOH 112 6 HOH HOH 445 A HOH 113 6 HOH HOH 446 A HOH 120 6 HOH HOH 447 A HOH 122 6 HOH HOH 448 A HOH 125 6 HOH HOH 449 A HOH 127 6 HOH HOH 450 A HOH 129 6 HOH HOH 451 A HOH 131 6 HOH HOH 452 A HOH 132 6 HOH HOH 453 A HOH 134 6 HOH HOH 454 A HOH 135 6 HOH HOH 455 A HOH 137 6 HOH HOH 456 A HOH 140 6 HOH HOH 457 A HOH 143 6 HOH HOH 458 A HOH 144 6 HOH HOH 459 A HOH 145 6 HOH HOH 460 A HOH 148 6 HOH HOH 461 A HOH 153 6 HOH HOH 462 A HOH 154 6 HOH HOH 463 A HOH 158 6 HOH HOH 464 A HOH 159 6 HOH HOH 465 A HOH 160 6 HOH HOH 466 A HOH 166 6 HOH HOH 467 A HOH 168 6 HOH HOH 468 A HOH 169 6 HOH HOH 469 A HOH 170 6 HOH HOH 470 A HOH 171 6 HOH HOH 471 A HOH 172 6 HOH HOH 472 A HOH 173 6 HOH HOH 473 A HOH 174 6 HOH HOH 474 A HOH 177 6 HOH HOH 475 A HOH 178 6 HOH HOH 476 A HOH 180 6 HOH HOH 477 A HOH 191 6 HOH HOH 478 A HOH 195 6 HOH HOH 479 A HOH 196 6 HOH HOH 480 A HOH 197 6 HOH HOH 481 A HOH 199 6 HOH HOH 482 A HOH 139 6 HOH HOH 201 B HOH 1 6 HOH HOH 202 B HOH 3 6 HOH HOH 203 B HOH 7 6 HOH HOH 204 B HOH 9 6 HOH HOH 205 B HOH 11 6 HOH HOH 206 B HOH 13 6 HOH HOH 207 B HOH 17 6 HOH HOH 208 B HOH 19 6 HOH HOH 209 B HOH 21 6 HOH HOH 210 B HOH 22 6 HOH HOH 211 B HOH 23 6 HOH HOH 212 B HOH 27 6 HOH HOH 213 B HOH 28 6 HOH HOH 214 B HOH 29 6 HOH HOH 215 B HOH 31 6 HOH HOH 216 B HOH 32 6 HOH HOH 217 B HOH 33 6 HOH HOH 218 B HOH 38 6 HOH HOH 219 B HOH 39 6 HOH HOH 220 B HOH 40 6 HOH HOH 221 B HOH 41 6 HOH HOH 222 B HOH 42 6 HOH HOH 223 B HOH 45 6 HOH HOH 224 B HOH 50 6 HOH HOH 225 B HOH 53 6 HOH HOH 226 B HOH 54 6 HOH HOH 227 B HOH 56 6 HOH HOH 228 B HOH 58 6 HOH HOH 229 B HOH 60 6 HOH HOH 230 B HOH 62 6 HOH HOH 231 B HOH 63 6 HOH HOH 232 B HOH 64 6 HOH HOH 233 B HOH 67 6 HOH HOH 234 B HOH 70 6 HOH HOH 235 B HOH 72 6 HOH HOH 236 B HOH 74 6 HOH HOH 237 B HOH 75 6 HOH HOH 238 B HOH 80 6 HOH HOH 239 B HOH 88 6 HOH HOH 240 B HOH 90 6 HOH HOH 241 B HOH 92 6 HOH HOH 242 B HOH 93 6 HOH HOH 243 B HOH 94 6 HOH HOH 244 B HOH 97 6 HOH HOH 245 B HOH 100 6 HOH HOH 246 B HOH 101 6 HOH HOH 247 B HOH 102 6 HOH HOH 248 B HOH 104 6 HOH HOH 249 B HOH 106 6 HOH HOH 250 B HOH 107 6 HOH HOH 251 B HOH 108 6 HOH HOH 252 B HOH 109 6 HOH HOH 253 B HOH 110 6 HOH HOH 254 B HOH 114 6 HOH HOH 255 B HOH 115 6 HOH HOH 256 B HOH 117 6 HOH HOH 257 B HOH 119 6 HOH HOH 258 B HOH 121 6 HOH HOH 259 B HOH 123 6 HOH HOH 260 B HOH 128 6 HOH HOH 261 B HOH 130 6 HOH HOH 262 B HOH 138 6 HOH HOH 263 B HOH 142 6 HOH HOH 264 B HOH 146 6 HOH HOH 265 B HOH 149 6 HOH HOH 266 B HOH 151 6 HOH HOH 267 B HOH 152 6 HOH HOH 268 B HOH 156 6 HOH HOH 269 B HOH 157 6 HOH HOH 270 B HOH 161 6 HOH HOH 271 B HOH 162 6 HOH HOH 272 B HOH 163 6 HOH HOH 273 B HOH 164 6 HOH HOH 274 B HOH 167 6 HOH HOH 275 B HOH 175 6 HOH HOH 276 B HOH 176 6 HOH HOH 277 B HOH 184 6 HOH HOH 278 B HOH 189 6 HOH HOH 279 B HOH 192 6 HOH HOH 280 B HOH 194 6 HOH HOH 281 B HOH 201 6 HOH HOH 282 B HOH 202 6 HOH HOH 283 B HOH 203 6 HOH HOH 284 B HOH 204 6 HOH HOH 285 B HOH 205 6 HOH HOH 286 B HOH 12 6 HOH HOH 101 C HOH 65 6 HOH HOH 102 C HOH 87 6 HOH HOH 103 C HOH 116 6 HOH HOH 104 C GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A HIS 3 n 3 HIS 3 A SER 4 n 4 SER 4 A MET 5 n 5 MET 5 A ARG 6 n 6 ARG 6 A TYR 7 n 7 TYR 7 A PHE 8 n 8 PHE 8 A GLU 9 n 9 GLU 9 A THR 10 n 10 THR 10 A ALA 11 n 11 ALA 11 A VAL 12 n 12 VAL 12 A SER 13 n 13 SER 13 A ARG 14 n 14 ARG 14 A PRO 15 n 15 PRO 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A GLU 18 n 18 GLU 18 A GLU 19 n 19 GLU 19 A PRO 20 n 20 PRO 20 A ARG 21 n 21 ARG 21 A TYR 22 n 22 TYR 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A VAL 25 n 25 VAL 25 A GLY 26 n 26 GLY 26 A TYR 27 n 27 TYR 27 A VAL 28 n 28 VAL 28 A ASP 29 n 29 ASP 29 A ASN 30 n 30 ASN 30 A LYS 31 n 31 LYS 31 A GLU 32 n 32 GLU 32 A PHE 33 n 33 PHE 33 A VAL 34 n 34 VAL 34 A ARG 35 n 35 ARG 35 A PHE 36 n 36 PHE 36 A ASP 37 n 37 ASP 37 A SER 38 n 38 SER 38 A ASP 39 n 39 ASP 39 A ALA 40 n 40 ALA 40 A GLU 41 n 41 GLU 41 A ASN 42 n 42 ASN 42 A PRO 43 n 43 PRO 43 A ARG 44 n 44 ARG 44 A TYR 45 n 45 TYR 45 A GLU 46 n 46 GLU 46 A PRO 47 n 47 PRO 47 A ARG 48 n 48 ARG 48 A ALA 49 n 49 ALA 49 A PRO 50 n 50 PRO 50 A TRP 51 n 51 TRP 51 A MET 52 n 52 MET 52 A GLU 53 n 53 GLU 53 A GLN 54 n 54 GLN 54 A GLU 55 n 55 GLU 55 A GLY 56 n 56 GLY 56 A PRO 57 n 57 PRO 57 A GLU 58 n 58 GLU 58 A TYR 59 n 59 TYR 59 A TRP 60 n 60 TRP 60 A GLU 61 n 61 GLU 61 A ARG 62 n 62 ARG 62 A GLU 63 n 63 GLU 63 A THR 64 n 64 THR 64 A GLN 65 n 65 GLN 65 A LYS 66 n 66 LYS 66 A ALA 67 n 67 ALA 67 A LYS 68 n 68 LYS 68 A GLY 69 n 69 GLY 69 A GLN 70 n 70 GLN 70 A GLU 71 n 71 GLU 71 A GLN 72 n 72 GLN 72 A TRP 73 n 73 TRP 73 A PHE 74 n 74 PHE 74 A ARG 75 n 75 ARG 75 A VAL 76 n 76 VAL 76 A SER 77 n 77 SER 77 A LEU 78 n 78 LEU 78 A ARG 79 n 79 ARG 79 A ASN 80 n 80 ASN 80 A LEU 81 n 81 LEU 81 A LEU 82 n 82 LEU 82 A GLY 83 n 83 GLY 83 A TYR 84 n 84 TYR 84 A TYR 85 n 85 TYR 85 A ASN 86 n 86 ASN 86 A GLN 87 n 87 GLN 87 A SER 88 n 88 SER 88 A ALA 89 n 89 ALA 89 A GLY 90 n 90 GLY 90 A GLY 91 n 91 GLY 91 A SER 92 n 92 SER 92 A HIS 93 n 93 HIS 93 A THR 94 n 94 THR 94 A LEU 95 n 95 LEU 95 A GLN 96 n 96 GLN 96 A GLN 97 n 97 GLN 97 A MET 98 n 98 MET 98 A SER 99 n 99 SER 99 A GLY 100 n 100 GLY 100 A CYS 101 n 101 CYS 101 A ASP 102 n 102 ASP 102 A LEU 103 n 103 LEU 103 A GLY 104 n 104 GLY 104 A SER 105 n 105 SER 105 A ASP 106 n 106 ASP 106 A TRP 107 n 107 TRP 107 A ARG 108 n 108 ARG 108 A LEU 109 n 109 LEU 109 A LEU 110 n 110 LEU 110 A ARG 111 n 111 ARG 111 A GLY 112 n 112 GLY 112 A TYR 113 n 113 TYR 113 A LEU 114 n 114 LEU 114 A GLN 115 n 115 GLN 115 A PHE 116 n 116 PHE 116 A ALA 117 n 117 ALA 117 A TYR 118 n 118 TYR 118 A GLU 119 n 119 GLU 119 A GLY 120 n 120 GLY 120 A ARG 121 n 121 ARG 121 A ASP 122 n 122 ASP 122 A TYR 123 n 123 TYR 123 A ILE 124 n 124 ILE 124 A ALA 125 n 125 ALA 125 A LEU 126 n 126 LEU 126 A ASN 127 n 127 ASN 127 A GLU 128 n 128 GLU 128 A ASP 129 n 129 ASP 129 A LEU 130 n 130 LEU 130 A LYS 131 n 131 LYS 131 A THR 132 n 132 THR 132 A TRP 133 n 133 TRP 133 A THR 134 n 134 THR 134 A ALA 135 n 135 ALA 135 A ALA 136 n 136 ALA 136 A ASP 137 n 137 ASP 137 A MET 138 n 138 MET 138 A ALA 139 n 139 ALA 139 A ALA 140 n 140 ALA 140 A GLN 141 n 141 GLN 141 A ILE 142 n 142 ILE 142 A THR 143 n 143 THR 143 A ARG 144 n 144 ARG 144 A ARG 145 n 145 ARG 145 A LYS 146 n 146 LYS 146 A TRP 147 n 147 TRP 147 A GLU 148 n 148 GLU 148 A GLN 149 n 149 GLN 149 A SER 150 n 150 SER 150 A GLY 151 n 151 GLY 151 A ALA 152 n 152 ALA 152 A ALA 153 n 153 ALA 153 A GLU 154 n 154 GLU 154 A ALA 155 n 155 ALA 155 A TYR 156 n 156 TYR 156 A LYS 157 n 157 LYS 157 A ALA 158 n 158 ALA 158 A TYR 159 n 159 TYR 159 A LEU 160 n 160 LEU 160 A GLU 161 n 161 GLU 161 A GLY 162 n 162 GLY 162 A GLU 163 n 163 GLU 163 A CYS 164 n 164 CYS 164 A VAL 165 n 165 VAL 165 A GLU 166 n 166 GLU 166 A TRP 167 n 167 TRP 167 A LEU 168 n 168 LEU 168 A HIS 169 n 169 HIS 169 A ARG 170 n 170 ARG 170 A TYR 171 n 171 TYR 171 A LEU 172 n 172 LEU 172 A LYS 173 n 173 LYS 173 A ASN 174 n 174 ASN 174 A GLY 175 n 175 GLY 175 A ASN 176 n 176 ASN 176 A ALA 177 n 177 ALA 177 A THR 178 n 178 THR 178 A LEU 179 n 179 LEU 179 A LEU 180 n 180 LEU 180 A ARG 181 n 181 ARG 181 A THR 182 n 182 THR 182 A ASP 183 n 183 ASP 183 A SER 184 n 184 SER 184 A PRO 185 n 185 PRO 185 A LYS 186 n 186 LYS 186 A ALA 187 n 187 ALA 187 A HIS 188 n 188 HIS 188 A VAL 189 n 189 VAL 189 A THR 190 n 190 THR 190 A HIS 191 n 191 HIS 191 A HIS 192 n 192 HIS 192 A PRO 193 n 193 PRO 193 A ARG 194 n 194 ARG 194 A SER 195 n 195 SER 195 A LYS 196 n 196 LYS 196 A GLY 197 n 197 GLY 197 A GLU 198 n 198 GLU 198 A VAL 199 n 199 VAL 199 A THR 200 n 200 THR 200 A LEU 201 n 201 LEU 201 A ARG 202 n 202 ARG 202 A CYS 203 n 203 CYS 203 A TRP 204 n 204 TRP 204 A ALA 205 n 205 ALA 205 A LEU 206 n 206 LEU 206 A GLY 207 n 207 GLY 207 A PHE 208 n 208 PHE 208 A TYR 209 n 209 TYR 209 A PRO 210 n 210 PRO 210 A ALA 211 n 211 ALA 211 A ASP 212 n 212 ASP 212 A ILE 213 n 213 ILE 213 A THR 214 n 214 THR 214 A LEU 215 n 215 LEU 215 A THR 216 n 216 THR 216 A TRP 217 n 217 TRP 217 A GLN 218 n 218 GLN 218 A LEU 219 n 219 LEU 219 A ASN 220 n 220 ASN 220 A GLY 221 n 221 GLY 221 A GLU 222 n 222 GLU 222 A GLU 223 n 223 GLU 223 A LEU 224 n 224 LEU 224 A THR 225 n 225 THR 225 A GLN 226 n 226 GLN 226 A ASP 227 n 227 ASP 227 A MET 228 n 228 MET 228 A GLU 229 n 229 GLU 229 A LEU 230 n 230 LEU 230 A VAL 231 n 231 VAL 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A ARG 234 n 234 ARG 234 A PRO 235 n 235 PRO 235 A ALA 236 n 236 ALA 236 A GLY 237 n 237 GLY 237 A ASP 238 n 238 ASP 238 A GLY 239 n 239 GLY 239 A THR 240 n 240 THR 240 A PHE 241 n 241 PHE 241 A GLN 242 n 242 GLN 242 A LYS 243 n 243 LYS 243 A TRP 244 n 244 TRP 244 A ALA 245 n 245 ALA 245 A SER 246 n 246 SER 246 A VAL 247 n 247 VAL 247 A VAL 248 n 248 VAL 248 A VAL 249 n 249 VAL 249 A PRO 250 n 250 PRO 250 A LEU 251 n 251 LEU 251 A n 252 252 A n 253 253 A n 254 254 A GLN 255 n 255 GLN 255 A ASN 256 n 256 ASN 256 A TYR 257 n 257 TYR 257 A THR 258 n 258 THR 258 A CYS 259 n 259 CYS 259 A ARG 260 n 260 ARG 260 A VAL 261 n 261 VAL 261 A TYR 262 n 262 TYR 262 A HIS 263 n 263 HIS 263 A GLU 264 n 264 GLU 264 A GLY 265 n 265 GLY 265 A LEU 266 n 266 LEU 266 A PRO 267 n 267 PRO 267 A GLU 268 n 268 GLU 268 A PRO 269 n 269 PRO 269 A LEU 270 n 270 LEU 270 A THR 271 n 271 THR 271 A LEU 272 n 272 LEU 272 A ARG 273 n 273 ARG 273 A TRP 274 n 274 TRP 274 A GLU 275 n 275 GLU 275 A PRO 276 n 276 PRO 276 A n 277 277 A n 278 278 A n 279 279 A n 280 280 A n 1 1 B GLN 2 n 2 GLN 2 B LYS 3 n 3 LYS 3 B THR 4 n 4 THR 4 B PRO 5 n 5 PRO 5 B GLN 6 n 6 GLN 6 B ILE 7 n 7 ILE 7 B GLN 8 n 8 GLN 8 B VAL 9 n 9 VAL 9 B TYR 10 n 10 TYR 10 B SER 11 n 11 SER 11 B ARG 12 n 12 ARG 12 B HIS 13 n 13 HIS 13 B PRO 14 n 14 PRO 14 B PRO 15 n 15 PRO 15 B GLU 16 n 16 GLU 16 B ASN 17 n 17 ASN 17 B GLY 18 n 18 GLY 18 B LYS 19 n 19 LYS 19 B PRO 20 n 20 PRO 20 B ASN 21 n 21 ASN 21 B ILE 22 n 22 ILE 22 B LEU 23 n 23 LEU 23 B ASN 24 n 24 ASN 24 B CYS 25 n 25 CYS 25 B TYR 26 n 26 TYR 26 B VAL 27 n 27 VAL 27 B THR 28 n 28 THR 28 B GLN 29 n 29 GLN 29 B PHE 30 n 30 PHE 30 B HIS 31 n 31 HIS 31 B PRO 32 n 32 PRO 32 B PRO 33 n 33 PRO 33 B HIS 34 n 34 HIS 34 B ILE 35 n 35 ILE 35 B GLU 36 n 36 GLU 36 B ILE 37 n 37 ILE 37 B GLN 38 n 38 GLN 38 B MET 39 n 39 MET 39 B LEU 40 n 40 LEU 40 B LYS 41 n 41 LYS 41 B ASN 42 n 42 ASN 42 B GLY 43 n 43 GLY 43 B LYS 44 n 44 LYS 44 B LYS 45 n 45 LYS 45 B ILE 46 n 46 ILE 46 B PRO 47 n 47 PRO 47 B LYS 48 n 48 LYS 48 B VAL 49 n 49 VAL 49 B GLU 50 n 50 GLU 50 B MET 51 n 51 MET 51 B SER 52 n 52 SER 52 B ASP 53 n 53 ASP 53 B MET 54 n 54 MET 54 B SER 55 n 55 SER 55 B PHE 56 n 56 PHE 56 B SER 57 n 57 SER 57 B LYS 58 n 58 LYS 58 B ASP 59 n 59 ASP 59 B TRP 60 n 60 TRP 60 B SER 61 n 61 SER 61 B PHE 62 n 62 PHE 62 B TYR 63 n 63 TYR 63 B ILE 64 n 64 ILE 64 B LEU 65 n 65 LEU 65 B ALA 66 n 66 ALA 66 B HIS 67 n 67 HIS 67 B THR 68 n 68 THR 68 B GLU 69 n 69 GLU 69 B PHE 70 n 70 PHE 70 B THR 71 n 71 THR 71 B PRO 72 n 72 PRO 72 B THR 73 n 73 THR 73 B GLU 74 n 74 GLU 74 B THR 75 n 75 THR 75 B ASP 76 n 76 ASP 76 B THR 77 n 77 THR 77 B TYR 78 n 78 TYR 78 B ALA 79 n 79 ALA 79 B CYS 80 n 80 CYS 80 B ARG 81 n 81 ARG 81 B VAL 82 n 82 VAL 82 B LYS 83 n 83 LYS 83 B HIS 84 n 84 HIS 84 B ASP 85 n 85 ALA 85 B SER 86 n 86 SER 86 B MET 87 n 87 MET 87 B ALA 88 n 88 ALA 88 B GLU 89 n 89 GLU 89 B PRO 90 n 90 PRO 90 B LYS 91 n 91 LYS 91 B THR 92 n 92 THR 92 B VAL 93 n 93 VAL 93 B TYR 94 n 94 TYR 94 B TRP 95 n 95 TRP 95 B ASP 96 n 96 ASP 96 B ARG 97 n 97 ARG 97 B ASP 98 n 98 ASP 98 B MET 99 n 99 MET 99 B ALA 1 n 1 ALA 1 C SER 2 n 2 SER 2 C ASN 3 n 3 ASN 3 C GLU 4 n 4 GLU 4 C ASN 5 n 5 ASN 5 C MET 6 n 6 MET 6 C GLU 7 n 7 GLU 7 C THR 8 n 8 THR 8 C MET 9 n 9 MET 9 C author_and_software_defined_assembly PISA 3 trimeric 4730 -19 19000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 46 A O GLU 46 A N ARG 35 A N ARG 35 A O LYS 31 A O LYS 31 A N VAL 28 A N VAL 28 A O ARG 21 A O ARG 21 A N VAL 12 A N VAL 12 A N TYR 7 A N TYR 7 A O SER 99 A O SER 99 A N ASP 102 A N ASP 102 A O LEU 110 A O LEU 110 A N LEU 114 A N LEU 114 A O LEU 126 A O LEU 126 A N ALA 125 A N ALA 125 A O THR 134 A O THR 134 A N HIS 192 A N HIS 192 A O THR 200 A O THR 200 A N CYS 203 A N CYS 203 A O ALA 245 A O ALA 245 A O SER 246 A O SER 246 A N GLU 229 A N GLU 229 A N HIS 192 A N HIS 192 A O THR 200 A O THR 200 A N CYS 203 A N CYS 203 A O ALA 245 A O ALA 245 A O GLN 242 A O GLN 242 A N ARG 234 A N ARG 234 A O GLU 222 A O GLU 222 A N LEU 219 A N LEU 219 A N THR 214 A N THR 214 A O TYR 262 A O TYR 262 A N CYS 259 A N CYS 259 A O LEU 272 A O LEU 272 B N TYR 10 B N TYR 10 B O ASN 24 B O ASN 24 B N CYS 25 B N CYS 25 B O ALA 66 B O ALA 66 B O HIS 67 B O HIS 67 B N GLU 50 B N GLU 50 B N TYR 10 B N TYR 10 B O ASN 24 B O ASN 24 B N CYS 25 B N CYS 25 B O ALA 66 B O ALA 66 B O TYR 63 B O TYR 63 B N SER 55 B N SER 55 B O LYS 44 B O LYS 44 B N LYS 41 B N LYS 41 B N GLN 38 B N GLN 38 B O ARG 81 B O ARG 81 B N VAL 82 B N VAL 82 B O LYS 91 B O LYS 91 1 A GLY 252 A GLY 252 1 Y 1 A LYS 253 A LYS 253 1 Y 1 A GLU 254 A GLU 254 1 Y 1 A PRO 277 A PRO 277 1 Y 1 A PRO 278 A PRO 278 1 Y 1 A SER 279 A SER 279 1 Y 1 A THR 280 A THR 280 1 Y 1 B ILE 1 B ILE 1 1 Y 1 -18.92 2.10 128.40 109.48 A A A C N CD GLU PRO PRO 275 276 276 Y 1 A PRO 43 -59.41 108.87 1 A TRP 107 B 59.20 11.79 1 A ARG 111 -173.87 148.00 1 A LYS 131 -141.02 -31.76 1 A ASN 176 17.78 -98.02 1 A SER 195 -149.85 -139.32 1 A PRO 210 -69.69 -179.23 1 A THR 225 -64.07 -79.45 1 A PRO 269 -43.39 158.77 1 B TRP 60 79.81 -9.55 1 C MET 6 -96.23 -106.14 45.79 5.9525 0.0000 -6.4379 -15.9373 0.0000 9.9848 0.9181 0.8895 0.2369 0.1940 0.1963 2.20 63.72 1260 24875 5.07 99.24 1.000 0.000 0.2340 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.296 2.20 63.72 172 3304 16 0 3116 0.010 3332 HARMONIC 2.00 1.12 4533 HARMONIC 2.00 1173 SINUSOIDAL 2.00 92 HARMONIC 2.00 490 HARMONIC 5.00 3332 HARMONIC 20.00 3.190 19.220 406 SEMIHARMONIC 5.000 3880 SEMIHARMONIC 4.000 0.2861 0.2555 0.2568 2.30 139 2883 3022 12 4.60 99.24 38.56 2.2 100 4HUX 24876 0.082 1 12.4 3.7 98.7 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection Blu-Ice ice data reduction XDS refinement BUSTER 2.10.0 heavy chain H2Db mutant H155A, Beta-2-microglobulin, NP peptide Crystal Structure of H2Db-H155A-NP 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 6 N N 6 N N A ALA 49 A ALA 49 HELX_P A GLU 53 A GLU 53 5 1 5 A GLY 56 A GLY 56 HELX_P A ASN 86 A ASN 86 1 2 31 A ASP 137 A ASP 137 HELX_P A GLN 149 A GLN 149 1 3 13 A ALA 152 A ALA 152 HELX_P A GLY 162 A GLY 162 1 4 11 A GLY 162 A GLY 162 HELX_P A ARG 181 A ARG 181 1 5 20 disulf 2.483 A CYS 101 A SG CYS 101 1_555 A CYS 164 A SG CYS 164 1_555 disulf 2.687 A CYS 203 A SG CYS 203 1_555 A CYS 259 A SG CYS 259 1_555 disulf 2.182 B CYS 25 B SG CYS 25 1_555 B CYS 80 B SG CYS 80 1_555 IMMUNE SYSTEM viral immunity, T cell, H2Db, influenza, viral escape, Immune system A TYR 209 A TYR 209 1 A PRO 210 A PRO 210 -3.65 B HIS 31 B HIS 31 1 B PRO 32 B PRO 32 1.18 HA11_MOUSE UNP 1 25 P01899 GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST B2MG_MOUSE UNP 2 21 P01887 IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHASMAEPKTVYWDRDM 4HUX PDB 3 4HUX 25 304 4HUX 1 280 P01899 A 1 1 280 21 119 4HUX 1 99 P01887 B 2 1 99 1 9 4HUX 1 9 4HUX C 3 1 9 1 HIS ENGINEERED MUTATION ALA 155 4HUX A P01899 UNP 179 155 8 4 4 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 46 A GLU 46 A PRO 47 A PRO 47 A LYS 31 A LYS 31 A ASP 37 A ASP 37 A ARG 21 A ARG 21 A VAL 28 A VAL 28 A HIS 3 A HIS 3 A VAL 12 A VAL 12 A THR 94 A THR 94 A LEU 103 A LEU 103 A LEU 109 A LEU 109 A TYR 118 A TYR 118 A ARG 121 A ARG 121 A LEU 126 A LEU 126 A TRP 133 A TRP 133 A ALA 135 A ALA 135 A LYS 186 A LYS 186 A PRO 193 A PRO 193 A VAL 199 A VAL 199 A PHE 208 A PHE 208 A PHE 241 A PHE 241 A VAL 249 A VAL 249 A MET 228 A MET 228 A LEU 230 A LEU 230 A LYS 186 A LYS 186 A PRO 193 A PRO 193 A VAL 199 A VAL 199 A PHE 208 A PHE 208 A PHE 241 A PHE 241 A VAL 249 A VAL 249 A ARG 234 A ARG 234 A PRO 235 A PRO 235 A GLU 222 A GLU 222 A GLU 223 A GLU 223 A THR 214 A THR 214 A LEU 219 A LEU 219 A THR 258 A THR 258 A TYR 262 A TYR 262 A LEU 270 A LEU 270 A LEU 272 A LEU 272 B GLN 6 B GLN 6 B SER 11 B SER 11 B ASN 21 B ASN 21 B PHE 30 B PHE 30 B PHE 62 B PHE 62 B PHE 70 B PHE 70 B GLU 50 B GLU 50 B MET 51 B MET 51 B GLN 6 B GLN 6 B SER 11 B SER 11 B ASN 21 B ASN 21 B PHE 30 B PHE 30 B PHE 62 B PHE 62 B PHE 70 B PHE 70 B SER 55 B SER 55 B PHE 56 B PHE 56 B LYS 44 B LYS 44 B LYS 45 B LYS 45 B GLU 36 B GLU 36 B LYS 41 B LYS 41 B TYR 78 B TYR 78 B LYS 83 B LYS 83 B LYS 91 B LYS 91 B TYR 94 B TYR 94 BINDING SITE FOR RESIDUE GOL A 301 Software 5 BINDING SITE FOR RESIDUE GOL A 302 Software 9 BINDING SITE FOR RESIDUE ACT B 101 Software 3 A ALA 158 A ALA 158 5 1_555 A GLU 161 A GLU 161 5 1_555 A GLY 162 A GLY 162 5 1_555 B GLY 43 B GLY 43 5 1_556 B ARG 81 B ARG 81 5 1_556 A PHE 8 A PHE 8 9 1_555 A GLU 9 A GLU 9 9 1_555 A THR 10 A THR 10 9 1_555 A ILE 23 A ILE 23 9 1_555 A VAL 25 A VAL 25 9 1_555 A TYR 27 A TYR 27 9 1_555 B MET 54 B MET 54 9 1_555 B SER 55 B SER 55 9 1_555 B PHE 56 B PHE 56 9 1_555 B GLN 2 B GLN 2 3 1_555 B LYS 3 B LYS 3 3 1_555 B THR 4 B THR 4 3 1_555 5 C 1 2 1