0.010831
0.000000
0.006959
0.000000
0.008977
0.000000
0.000000
0.000000
0.020493
0.00000
0.00000
0.00000
Gras, S.
Twist, K.A.
Rossjohn, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
122.72
90.00
92.330
111.390
58.000
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
5570
5575
10.1073/pnas.1302935110
23493558
Preemptive priming readily overcomes structure-based mechanisms of virus escape.
2013
100
1
CCD
2011-07-29
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.939
1.0
MX2
Australian Synchrotron
0.939
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
32403.041
H-2 class I histocompatibility antigen, D-B alpha chain
H155A
1
man
polymer
11660.350
Beta-2-microglobulin
1
man
polymer
1026.099
NP peptide
1
syn
polymer
92.094
GLYCEROL
2
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
18.015
water
172
nat
water
H-2D(B)
no
no
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEAYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEAYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST
A
polypeptide(L)
no
no
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHASMAEPKTVYWDRDM
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHASMAEPKTVYWDRDM
B
polypeptide(L)
no
no
ASNENMETM
ASNENMETM
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
H2-D1
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)
plasmid
pET
mouse
sample
B2m
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)
plasmid
pET
1
2.78
55.80
VAPOR DIFFUSION, HANGING DROP
8.5
0.1M Tris HCl, 0.2M LiSO4, 25-30% PEG 8000, pH 8.5, vapor diffusion, hanging drop, temperature 298K
298
pdbx_unobs_or_zero_occ_atoms
software
repository
Initial release
Database references
Database references
Advisory
Refinement description
1
0
2013-02-27
1
1
2013-03-27
1
2
2013-04-24
1
3
2017-11-15
_software.name
RCSB
Y
RCSB
2012-11-05
REL
REL
GOL
GLYCEROL
ACT
ACETATE ION
HOH
water
GOL
1
4
GOL
GOL
301
A
GOL
2
4
GOL
GOL
302
A
ACT
2
5
ACT
ACT
101
B
HOH
2
6
HOH
HOH
401
A
HOH
4
6
HOH
HOH
402
A
HOH
5
6
HOH
HOH
403
A
HOH
6
6
HOH
HOH
404
A
HOH
8
6
HOH
HOH
405
A
HOH
10
6
HOH
HOH
406
A
HOH
14
6
HOH
HOH
407
A
HOH
15
6
HOH
HOH
408
A
HOH
16
6
HOH
HOH
409
A
HOH
18
6
HOH
HOH
410
A
HOH
20
6
HOH
HOH
411
A
HOH
24
6
HOH
HOH
412
A
HOH
25
6
HOH
HOH
413
A
HOH
26
6
HOH
HOH
414
A
HOH
30
6
HOH
HOH
415
A
HOH
34
6
HOH
HOH
416
A
HOH
35
6
HOH
HOH
417
A
HOH
36
6
HOH
HOH
418
A
HOH
37
6
HOH
HOH
419
A
HOH
43
6
HOH
HOH
420
A
HOH
44
6
HOH
HOH
421
A
HOH
47
6
HOH
HOH
422
A
HOH
51
6
HOH
HOH
423
A
HOH
52
6
HOH
HOH
424
A
HOH
55
6
HOH
HOH
425
A
HOH
57
6
HOH
HOH
426
A
HOH
61
6
HOH
HOH
427
A
HOH
66
6
HOH
HOH
428
A
HOH
69
6
HOH
HOH
429
A
HOH
71
6
HOH
HOH
430
A
HOH
76
6
HOH
HOH
431
A
HOH
77
6
HOH
HOH
432
A
HOH
81
6
HOH
HOH
433
A
HOH
82
6
HOH
HOH
434
A
HOH
83
6
HOH
HOH
435
A
HOH
85
6
HOH
HOH
436
A
HOH
86
6
HOH
HOH
437
A
HOH
89
6
HOH
HOH
438
A
HOH
95
6
HOH
HOH
439
A
HOH
96
6
HOH
HOH
440
A
HOH
98
6
HOH
HOH
441
A
HOH
99
6
HOH
HOH
442
A
HOH
103
6
HOH
HOH
443
A
HOH
105
6
HOH
HOH
444
A
HOH
112
6
HOH
HOH
445
A
HOH
113
6
HOH
HOH
446
A
HOH
120
6
HOH
HOH
447
A
HOH
122
6
HOH
HOH
448
A
HOH
125
6
HOH
HOH
449
A
HOH
127
6
HOH
HOH
450
A
HOH
129
6
HOH
HOH
451
A
HOH
131
6
HOH
HOH
452
A
HOH
132
6
HOH
HOH
453
A
HOH
134
6
HOH
HOH
454
A
HOH
135
6
HOH
HOH
455
A
HOH
137
6
HOH
HOH
456
A
HOH
140
6
HOH
HOH
457
A
HOH
143
6
HOH
HOH
458
A
HOH
144
6
HOH
HOH
459
A
HOH
145
6
HOH
HOH
460
A
HOH
148
6
HOH
HOH
461
A
HOH
153
6
HOH
HOH
462
A
HOH
154
6
HOH
HOH
463
A
HOH
158
6
HOH
HOH
464
A
HOH
159
6
HOH
HOH
465
A
HOH
160
6
HOH
HOH
466
A
HOH
166
6
HOH
HOH
467
A
HOH
168
6
HOH
HOH
468
A
HOH
169
6
HOH
HOH
469
A
HOH
170
6
HOH
HOH
470
A
HOH
171
6
HOH
HOH
471
A
HOH
172
6
HOH
HOH
472
A
HOH
173
6
HOH
HOH
473
A
HOH
174
6
HOH
HOH
474
A
HOH
177
6
HOH
HOH
475
A
HOH
178
6
HOH
HOH
476
A
HOH
180
6
HOH
HOH
477
A
HOH
191
6
HOH
HOH
478
A
HOH
195
6
HOH
HOH
479
A
HOH
196
6
HOH
HOH
480
A
HOH
197
6
HOH
HOH
481
A
HOH
199
6
HOH
HOH
482
A
HOH
139
6
HOH
HOH
201
B
HOH
1
6
HOH
HOH
202
B
HOH
3
6
HOH
HOH
203
B
HOH
7
6
HOH
HOH
204
B
HOH
9
6
HOH
HOH
205
B
HOH
11
6
HOH
HOH
206
B
HOH
13
6
HOH
HOH
207
B
HOH
17
6
HOH
HOH
208
B
HOH
19
6
HOH
HOH
209
B
HOH
21
6
HOH
HOH
210
B
HOH
22
6
HOH
HOH
211
B
HOH
23
6
HOH
HOH
212
B
HOH
27
6
HOH
HOH
213
B
HOH
28
6
HOH
HOH
214
B
HOH
29
6
HOH
HOH
215
B
HOH
31
6
HOH
HOH
216
B
HOH
32
6
HOH
HOH
217
B
HOH
33
6
HOH
HOH
218
B
HOH
38
6
HOH
HOH
219
B
HOH
39
6
HOH
HOH
220
B
HOH
40
6
HOH
HOH
221
B
HOH
41
6
HOH
HOH
222
B
HOH
42
6
HOH
HOH
223
B
HOH
45
6
HOH
HOH
224
B
HOH
50
6
HOH
HOH
225
B
HOH
53
6
HOH
HOH
226
B
HOH
54
6
HOH
HOH
227
B
HOH
56
6
HOH
HOH
228
B
HOH
58
6
HOH
HOH
229
B
HOH
60
6
HOH
HOH
230
B
HOH
62
6
HOH
HOH
231
B
HOH
63
6
HOH
HOH
232
B
HOH
64
6
HOH
HOH
233
B
HOH
67
6
HOH
HOH
234
B
HOH
70
6
HOH
HOH
235
B
HOH
72
6
HOH
HOH
236
B
HOH
74
6
HOH
HOH
237
B
HOH
75
6
HOH
HOH
238
B
HOH
80
6
HOH
HOH
239
B
HOH
88
6
HOH
HOH
240
B
HOH
90
6
HOH
HOH
241
B
HOH
92
6
HOH
HOH
242
B
HOH
93
6
HOH
HOH
243
B
HOH
94
6
HOH
HOH
244
B
HOH
97
6
HOH
HOH
245
B
HOH
100
6
HOH
HOH
246
B
HOH
101
6
HOH
HOH
247
B
HOH
102
6
HOH
HOH
248
B
HOH
104
6
HOH
HOH
249
B
HOH
106
6
HOH
HOH
250
B
HOH
107
6
HOH
HOH
251
B
HOH
108
6
HOH
HOH
252
B
HOH
109
6
HOH
HOH
253
B
HOH
110
6
HOH
HOH
254
B
HOH
114
6
HOH
HOH
255
B
HOH
115
6
HOH
HOH
256
B
HOH
117
6
HOH
HOH
257
B
HOH
119
6
HOH
HOH
258
B
HOH
121
6
HOH
HOH
259
B
HOH
123
6
HOH
HOH
260
B
HOH
128
6
HOH
HOH
261
B
HOH
130
6
HOH
HOH
262
B
HOH
138
6
HOH
HOH
263
B
HOH
142
6
HOH
HOH
264
B
HOH
146
6
HOH
HOH
265
B
HOH
149
6
HOH
HOH
266
B
HOH
151
6
HOH
HOH
267
B
HOH
152
6
HOH
HOH
268
B
HOH
156
6
HOH
HOH
269
B
HOH
157
6
HOH
HOH
270
B
HOH
161
6
HOH
HOH
271
B
HOH
162
6
HOH
HOH
272
B
HOH
163
6
HOH
HOH
273
B
HOH
164
6
HOH
HOH
274
B
HOH
167
6
HOH
HOH
275
B
HOH
175
6
HOH
HOH
276
B
HOH
176
6
HOH
HOH
277
B
HOH
184
6
HOH
HOH
278
B
HOH
189
6
HOH
HOH
279
B
HOH
192
6
HOH
HOH
280
B
HOH
194
6
HOH
HOH
281
B
HOH
201
6
HOH
HOH
282
B
HOH
202
6
HOH
HOH
283
B
HOH
203
6
HOH
HOH
284
B
HOH
204
6
HOH
HOH
285
B
HOH
205
6
HOH
HOH
286
B
HOH
12
6
HOH
HOH
101
C
HOH
65
6
HOH
HOH
102
C
HOH
87
6
HOH
HOH
103
C
HOH
116
6
HOH
HOH
104
C
GLY
1
n
1
GLY
1
A
PRO
2
n
2
PRO
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
MET
5
n
5
MET
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
GLU
9
n
9
GLU
9
A
THR
10
n
10
THR
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
GLU
18
n
18
GLU
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
TYR
22
n
22
TYR
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASN
30
n
30
ASN
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
GLU
41
n
41
GLU
41
A
ASN
42
n
42
ASN
42
A
PRO
43
n
43
PRO
43
A
ARG
44
n
44
ARG
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
PRO
50
n
50
PRO
50
A
TRP
51
n
51
TRP
51
A
MET
52
n
52
MET
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
GLU
61
n
61
GLU
61
A
ARG
62
n
62
ARG
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
GLN
65
n
65
GLN
65
A
LYS
66
n
66
LYS
66
A
ALA
67
n
67
ALA
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
GLN
70
n
70
GLN
70
A
GLU
71
n
71
GLU
71
A
GLN
72
n
72
GLN
72
A
TRP
73
n
73
TRP
73
A
PHE
74
n
74
PHE
74
A
ARG
75
n
75
ARG
75
A
VAL
76
n
76
VAL
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
ARG
79
n
79
ARG
79
A
ASN
80
n
80
ASN
80
A
LEU
81
n
81
LEU
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
GLN
97
n
97
GLN
97
A
MET
98
n
98
MET
98
A
SER
99
n
99
SER
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ASP
106
n
106
ASP
106
A
TRP
107
n
107
TRP
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
LEU
114
n
114
LEU
114
A
GLN
115
n
115
GLN
115
A
PHE
116
n
116
PHE
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
GLU
119
n
119
GLU
119
A
GLY
120
n
120
GLY
120
A
ARG
121
n
121
ARG
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
ASN
127
n
127
ASN
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
LYS
131
n
131
LYS
131
A
THR
132
n
132
THR
132
A
TRP
133
n
133
TRP
133
A
THR
134
n
134
THR
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
ILE
142
n
142
ILE
142
A
THR
143
n
143
THR
143
A
ARG
144
n
144
ARG
144
A
ARG
145
n
145
ARG
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
GLN
149
n
149
GLN
149
A
SER
150
n
150
SER
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
ALA
155
n
155
ALA
155
A
TYR
156
n
156
TYR
156
A
LYS
157
n
157
LYS
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
GLU
163
n
163
GLU
163
A
CYS
164
n
164
CYS
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
HIS
169
n
169
HIS
169
A
ARG
170
n
170
ARG
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
LYS
173
n
173
LYS
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
ASN
176
n
176
ASN
176
A
ALA
177
n
177
ALA
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
LEU
180
n
180
LEU
180
A
ARG
181
n
181
ARG
181
A
THR
182
n
182
THR
182
A
ASP
183
n
183
ASP
183
A
SER
184
n
184
SER
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
ALA
187
n
187
ALA
187
A
HIS
188
n
188
HIS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
PRO
193
n
193
PRO
193
A
ARG
194
n
194
ARG
194
A
SER
195
n
195
SER
195
A
LYS
196
n
196
LYS
196
A
GLY
197
n
197
GLY
197
A
GLU
198
n
198
GLU
198
A
VAL
199
n
199
VAL
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
ASP
212
n
212
ASP
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
GLN
218
n
218
GLN
218
A
LEU
219
n
219
LEU
219
A
ASN
220
n
220
ASN
220
A
GLY
221
n
221
GLY
221
A
GLU
222
n
222
GLU
222
A
GLU
223
n
223
GLU
223
A
LEU
224
n
224
LEU
224
A
THR
225
n
225
THR
225
A
GLN
226
n
226
GLN
226
A
ASP
227
n
227
ASP
227
A
MET
228
n
228
MET
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
ALA
245
n
245
ALA
245
A
SER
246
n
246
SER
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
LEU
251
n
251
LEU
251
A
n
252
252
A
n
253
253
A
n
254
254
A
GLN
255
n
255
GLN
255
A
ASN
256
n
256
ASN
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
ARG
260
n
260
ARG
260
A
VAL
261
n
261
VAL
261
A
TYR
262
n
262
TYR
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
GLU
268
n
268
GLU
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
GLU
275
n
275
GLU
275
A
PRO
276
n
276
PRO
276
A
n
277
277
A
n
278
278
A
n
279
279
A
n
280
280
A
n
1
1
B
GLN
2
n
2
GLN
2
B
LYS
3
n
3
LYS
3
B
THR
4
n
4
THR
4
B
PRO
5
n
5
PRO
5
B
GLN
6
n
6
GLN
6
B
ILE
7
n
7
ILE
7
B
GLN
8
n
8
GLN
8
B
VAL
9
n
9
VAL
9
B
TYR
10
n
10
TYR
10
B
SER
11
n
11
SER
11
B
ARG
12
n
12
ARG
12
B
HIS
13
n
13
HIS
13
B
PRO
14
n
14
PRO
14
B
PRO
15
n
15
PRO
15
B
GLU
16
n
16
GLU
16
B
ASN
17
n
17
ASN
17
B
GLY
18
n
18
GLY
18
B
LYS
19
n
19
LYS
19
B
PRO
20
n
20
PRO
20
B
ASN
21
n
21
ASN
21
B
ILE
22
n
22
ILE
22
B
LEU
23
n
23
LEU
23
B
ASN
24
n
24
ASN
24
B
CYS
25
n
25
CYS
25
B
TYR
26
n
26
TYR
26
B
VAL
27
n
27
VAL
27
B
THR
28
n
28
THR
28
B
GLN
29
n
29
GLN
29
B
PHE
30
n
30
PHE
30
B
HIS
31
n
31
HIS
31
B
PRO
32
n
32
PRO
32
B
PRO
33
n
33
PRO
33
B
HIS
34
n
34
HIS
34
B
ILE
35
n
35
ILE
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
GLN
38
n
38
GLN
38
B
MET
39
n
39
MET
39
B
LEU
40
n
40
LEU
40
B
LYS
41
n
41
LYS
41
B
ASN
42
n
42
ASN
42
B
GLY
43
n
43
GLY
43
B
LYS
44
n
44
LYS
44
B
LYS
45
n
45
LYS
45
B
ILE
46
n
46
ILE
46
B
PRO
47
n
47
PRO
47
B
LYS
48
n
48
LYS
48
B
VAL
49
n
49
VAL
49
B
GLU
50
n
50
GLU
50
B
MET
51
n
51
MET
51
B
SER
52
n
52
SER
52
B
ASP
53
n
53
ASP
53
B
MET
54
n
54
MET
54
B
SER
55
n
55
SER
55
B
PHE
56
n
56
PHE
56
B
SER
57
n
57
SER
57
B
LYS
58
n
58
LYS
58
B
ASP
59
n
59
ASP
59
B
TRP
60
n
60
TRP
60
B
SER
61
n
61
SER
61
B
PHE
62
n
62
PHE
62
B
TYR
63
n
63
TYR
63
B
ILE
64
n
64
ILE
64
B
LEU
65
n
65
LEU
65
B
ALA
66
n
66
ALA
66
B
HIS
67
n
67
HIS
67
B
THR
68
n
68
THR
68
B
GLU
69
n
69
GLU
69
B
PHE
70
n
70
PHE
70
B
THR
71
n
71
THR
71
B
PRO
72
n
72
PRO
72
B
THR
73
n
73
THR
73
B
GLU
74
n
74
GLU
74
B
THR
75
n
75
THR
75
B
ASP
76
n
76
ASP
76
B
THR
77
n
77
THR
77
B
TYR
78
n
78
TYR
78
B
ALA
79
n
79
ALA
79
B
CYS
80
n
80
CYS
80
B
ARG
81
n
81
ARG
81
B
VAL
82
n
82
VAL
82
B
LYS
83
n
83
LYS
83
B
HIS
84
n
84
HIS
84
B
ASP
85
n
85
ALA
85
B
SER
86
n
86
SER
86
B
MET
87
n
87
MET
87
B
ALA
88
n
88
ALA
88
B
GLU
89
n
89
GLU
89
B
PRO
90
n
90
PRO
90
B
LYS
91
n
91
LYS
91
B
THR
92
n
92
THR
92
B
VAL
93
n
93
VAL
93
B
TYR
94
n
94
TYR
94
B
TRP
95
n
95
TRP
95
B
ASP
96
n
96
ASP
96
B
ARG
97
n
97
ARG
97
B
ASP
98
n
98
ASP
98
B
MET
99
n
99
MET
99
B
ALA
1
n
1
ALA
1
C
SER
2
n
2
SER
2
C
ASN
3
n
3
ASN
3
C
GLU
4
n
4
GLU
4
C
ASN
5
n
5
ASN
5
C
MET
6
n
6
MET
6
C
GLU
7
n
7
GLU
7
C
THR
8
n
8
THR
8
C
MET
9
n
9
MET
9
C
author_and_software_defined_assembly
PISA
3
trimeric
4730
-19
19000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
46
A
N
ARG
35
A
N
ARG
35
A
O
LYS
31
A
O
LYS
31
A
N
VAL
28
A
N
VAL
28
A
O
ARG
21
A
O
ARG
21
A
N
VAL
12
A
N
VAL
12
A
N
TYR
7
A
N
TYR
7
A
O
SER
99
A
O
SER
99
A
N
ASP
102
A
N
ASP
102
A
O
LEU
110
A
O
LEU
110
A
N
LEU
114
A
N
LEU
114
A
O
LEU
126
A
O
LEU
126
A
N
ALA
125
A
N
ALA
125
A
O
THR
134
A
O
THR
134
A
N
HIS
192
A
N
HIS
192
A
O
THR
200
A
O
THR
200
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
SER
246
A
O
SER
246
A
N
GLU
229
A
N
GLU
229
A
N
HIS
192
A
N
HIS
192
A
O
THR
200
A
O
THR
200
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
GLN
242
A
O
GLN
242
A
N
ARG
234
A
N
ARG
234
A
O
GLU
222
A
O
GLU
222
A
N
LEU
219
A
N
LEU
219
A
N
THR
214
A
N
THR
214
A
O
TYR
262
A
O
TYR
262
A
N
CYS
259
A
N
CYS
259
A
O
LEU
272
A
O
LEU
272
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
CYS
25
B
N
CYS
25
B
O
ALA
66
B
O
ALA
66
B
O
HIS
67
B
O
HIS
67
B
N
GLU
50
B
N
GLU
50
B
N
TYR
10
B
N
TYR
10
B
O
ASN
24
B
O
ASN
24
B
N
CYS
25
B
N
CYS
25
B
O
ALA
66
B
O
ALA
66
B
O
TYR
63
B
O
TYR
63
B
N
SER
55
B
N
SER
55
B
O
LYS
44
B
O
LYS
44
B
N
LYS
41
B
N
LYS
41
B
N
GLN
38
B
N
GLN
38
B
O
ARG
81
B
O
ARG
81
B
N
VAL
82
B
N
VAL
82
B
O
LYS
91
B
O
LYS
91
1
A
GLY
252
A
GLY
252
1
Y
1
A
LYS
253
A
LYS
253
1
Y
1
A
GLU
254
A
GLU
254
1
Y
1
A
PRO
277
A
PRO
277
1
Y
1
A
PRO
278
A
PRO
278
1
Y
1
A
SER
279
A
SER
279
1
Y
1
A
THR
280
A
THR
280
1
Y
1
B
ILE
1
B
ILE
1
1
Y
1
-18.92
2.10
128.40
109.48
A
A
A
C
N
CD
GLU
PRO
PRO
275
276
276
Y
1
A
PRO
43
-59.41
108.87
1
A
TRP
107
B
59.20
11.79
1
A
ARG
111
-173.87
148.00
1
A
LYS
131
-141.02
-31.76
1
A
ASN
176
17.78
-98.02
1
A
SER
195
-149.85
-139.32
1
A
PRO
210
-69.69
-179.23
1
A
THR
225
-64.07
-79.45
1
A
PRO
269
-43.39
158.77
1
B
TRP
60
79.81
-9.55
1
C
MET
6
-96.23
-106.14
45.79
5.9525
0.0000
-6.4379
-15.9373
0.0000
9.9848
0.9181
0.8895
0.2369
0.1940
0.1963
2.20
63.72
1260
24875
5.07
99.24
1.000
0.000
0.2340
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.296
2.20
63.72
172
3304
16
0
3116
0.010
3332
HARMONIC
2.00
1.12
4533
HARMONIC
2.00
1173
SINUSOIDAL
2.00
92
HARMONIC
2.00
490
HARMONIC
5.00
3332
HARMONIC
20.00
3.190
19.220
406
SEMIHARMONIC
5.000
3880
SEMIHARMONIC
4.000
0.2861
0.2555
0.2568
2.30
139
2883
3022
12
4.60
99.24
38.56
2.2
100
4HUX
24876
0.082
1
12.4
3.7
98.7
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
Blu-Ice
ice
data reduction
XDS
refinement
BUSTER
2.10.0
heavy chain H2Db mutant H155A, Beta-2-microglobulin, NP peptide
Crystal Structure of H2Db-H155A-NP
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
ALA
49
A
ALA
49
HELX_P
A
GLU
53
A
GLU
53
5
1
5
A
GLY
56
A
GLY
56
HELX_P
A
ASN
86
A
ASN
86
1
2
31
A
ASP
137
A
ASP
137
HELX_P
A
GLN
149
A
GLN
149
1
3
13
A
ALA
152
A
ALA
152
HELX_P
A
GLY
162
A
GLY
162
1
4
11
A
GLY
162
A
GLY
162
HELX_P
A
ARG
181
A
ARG
181
1
5
20
disulf
2.483
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.687
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.182
B
CYS
25
B
SG
CYS
25
1_555
B
CYS
80
B
SG
CYS
80
1_555
IMMUNE SYSTEM
viral immunity, T cell, H2Db, influenza, viral escape, Immune system
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
-3.65
B
HIS
31
B
HIS
31
1
B
PRO
32
B
PRO
32
1.18
HA11_MOUSE
UNP
1
25
P01899
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPST
B2MG_MOUSE
UNP
2
21
P01887
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHASMAEPKTVYWDRDM
4HUX
PDB
3
4HUX
25
304
4HUX
1
280
P01899
A
1
1
280
21
119
4HUX
1
99
P01887
B
2
1
99
1
9
4HUX
1
9
4HUX
C
3
1
9
1
HIS
ENGINEERED MUTATION
ALA
155
4HUX
A
P01899
UNP
179
155
8
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
LYS
31
A
LYS
31
A
ASP
37
A
ASP
37
A
ARG
21
A
ARG
21
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
VAL
12
A
VAL
12
A
THR
94
A
THR
94
A
LEU
103
A
LEU
103
A
LEU
109
A
LEU
109
A
TYR
118
A
TYR
118
A
ARG
121
A
ARG
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
MET
228
A
MET
228
A
LEU
230
A
LEU
230
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
GLU
222
A
GLU
222
A
GLU
223
A
GLU
223
A
THR
214
A
THR
214
A
LEU
219
A
LEU
219
A
THR
258
A
THR
258
A
TYR
262
A
TYR
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
B
GLN
6
B
GLN
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
62
B
PHE
62
B
PHE
70
B
PHE
70
B
GLU
50
B
GLU
50
B
MET
51
B
MET
51
B
GLN
6
B
GLN
6
B
SER
11
B
SER
11
B
ASN
21
B
ASN
21
B
PHE
30
B
PHE
30
B
PHE
62
B
PHE
62
B
PHE
70
B
PHE
70
B
SER
55
B
SER
55
B
PHE
56
B
PHE
56
B
LYS
44
B
LYS
44
B
LYS
45
B
LYS
45
B
GLU
36
B
GLU
36
B
LYS
41
B
LYS
41
B
TYR
78
B
TYR
78
B
LYS
83
B
LYS
83
B
LYS
91
B
LYS
91
B
TYR
94
B
TYR
94
BINDING SITE FOR RESIDUE GOL A 301
Software
5
BINDING SITE FOR RESIDUE GOL A 302
Software
9
BINDING SITE FOR RESIDUE ACT B 101
Software
3
A
ALA
158
A
ALA
158
5
1_555
A
GLU
161
A
GLU
161
5
1_555
A
GLY
162
A
GLY
162
5
1_555
B
GLY
43
B
GLY
43
5
1_556
B
ARG
81
B
ARG
81
5
1_556
A
PHE
8
A
PHE
8
9
1_555
A
GLU
9
A
GLU
9
9
1_555
A
THR
10
A
THR
10
9
1_555
A
ILE
23
A
ILE
23
9
1_555
A
VAL
25
A
VAL
25
9
1_555
A
TYR
27
A
TYR
27
9
1_555
B
MET
54
B
MET
54
9
1_555
B
SER
55
B
SER
55
9
1_555
B
PHE
56
B
PHE
56
9
1_555
B
GLN
2
B
GLN
2
3
1_555
B
LYS
3
B
LYS
3
3
1_555
B
THR
4
B
THR
4
3
1_555
5
C 1 2 1