0.009031
0.000000
0.002901
0.000000
0.012216
0.000000
0.000000
0.000000
0.020984
0.00000
0.00000
0.00000
Zhang, Y.
Zhang, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
107.81
90.00
110.735
81.863
50.055
C21 H17 F3 N4
382.382
5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N-[4-(trifluoromethyl)benzyl]pyridin-2-amine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
N
Y
4
N
C
Y
5
N
N
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
N
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
N
N
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
N
25
N
C
N
26
N
F
N
27
N
F
N
28
N
F
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
N
N
47
S
C
N
48
N
C
N
49
N
O
N
50
N
C
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
N
N
60
S
C
N
61
N
C
N
62
N
O
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
N
N
67
N
C
N
68
N
N
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
R
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
S
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
N
4
N
sing
Y
5
N
sing
N
6
N
sing
Y
7
N
doub
Y
8
N
sing
Y
9
N
doub
Y
10
N
sing
Y
11
N
doub
Y
12
N
sing
N
13
N
sing
Y
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
Y
18
N
doub
Y
19
N
sing
N
20
N
sing
N
21
N
sing
Y
22
N
sing
Y
23
N
doub
Y
24
N
doub
Y
25
N
sing
Y
26
N
sing
Y
27
N
sing
Y
28
N
doub
Y
29
N
sing
Y
30
N
doub
Y
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
5689
5694
10.1073/pnas.1219457110
23493555
Design and pharmacology of a highly specific dual FMS and KIT kinase inhibitor.
2013
10.2210/pdb4hvs/pdb
pdb_00004hvs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-06-10
ADSC QUANTUM 210
Double flat crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.1159
1.0
8.3.1
ALS
1.1159
SYNCHROTRON
ALS BEAMLINE 8.3.1
38042.102
Mast/stem cell growth factor receptor Kit
2.7.10.1
KIT kinase domain with KID deleted
I563S, V569S, Y609Q, L631S, M651E, I662H, I690H, C691S, K693D, I756S, L762N, V825D, C844S, L890S, L912D, L923D
1
man
polymer
382.382
5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N-[4-(trifluoromethyl)benzyl]pyridin-2-amine
1
syn
non-polymer
18.015
water
108
nat
water
SCFR, Piebald trait protein, PBT, Proto-oncogene c-Kit, Tyrosine-protein kinase Kit, p145 c-kit, v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
no
no
MGHHHHHHMPMYEVQWKVVEESNGNNYSYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAQGLIKSDAAMTVA
VKMLKPSAHSTEREALMSELKVLSYLGNHENIVNLLGACTHGGPTLVITEYCCYGDLLNFLRRKRDSFHSSDTSPASMED
DENALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVDKGNARLPVKWMAPE
SIFNSVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMSSPEHAPAEMYDIMKTCWDADPDKRPTFKQ
IVQDIEKQISESTNH
MGHHHHHHMPMYEVQWKVVEESNGNNYSYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAQGLIKSDAAMTVA
VKMLKPSAHSTEREALMSELKVLSYLGNHENIVNLLGACTHGGPTLVITEYCCYGDLLNFLRRKRDSFHSSDTSPASMED
DENALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVDKGNARLPVKWMAPE
SIFNSVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMSSPEHAPAEMYDIMKTCWDADPDKRPTFKQ
IVQDIEKQISESTNH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
KIT, SCFR
9606
Homo sapiens
562
Escherichia coli
1
2.84
56.72
VAPOR DIFFUSION, SITTING DROP
6.0
1.6M ammonium sulfate, 2.0M sodium Chloride and 0.1M Bis-Tris, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2013-04-17
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-11-06
REL
REL
647
5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N-[4-(trifluoromethyl)benzyl]pyridin-2-amine
HOH
water
1T45
PDB ENTRY 1T45
PDB
experimental model
647
1
2
647
647
1001
A
HOH
1
3
HOH
HOH
1101
A
HOH
2
3
HOH
HOH
1102
A
HOH
3
3
HOH
HOH
1103
A
HOH
4
3
HOH
HOH
1104
A
HOH
5
3
HOH
HOH
1105
A
HOH
6
3
HOH
HOH
1106
A
HOH
7
3
HOH
HOH
1107
A
HOH
8
3
HOH
HOH
1108
A
HOH
9
3
HOH
HOH
1109
A
HOH
10
3
HOH
HOH
1110
A
HOH
11
3
HOH
HOH
1111
A
HOH
12
3
HOH
HOH
1112
A
HOH
13
3
HOH
HOH
1113
A
HOH
14
3
HOH
HOH
1114
A
HOH
15
3
HOH
HOH
1115
A
HOH
16
3
HOH
HOH
1116
A
HOH
17
3
HOH
HOH
1117
A
HOH
18
3
HOH
HOH
1118
A
HOH
19
3
HOH
HOH
1119
A
HOH
20
3
HOH
HOH
1120
A
HOH
21
3
HOH
HOH
1121
A
HOH
22
3
HOH
HOH
1122
A
HOH
23
3
HOH
HOH
1123
A
HOH
24
3
HOH
HOH
1124
A
HOH
25
3
HOH
HOH
1125
A
HOH
26
3
HOH
HOH
1126
A
HOH
27
3
HOH
HOH
1127
A
HOH
28
3
HOH
HOH
1128
A
HOH
29
3
HOH
HOH
1129
A
HOH
30
3
HOH
HOH
1130
A
HOH
31
3
HOH
HOH
1131
A
HOH
32
3
HOH
HOH
1132
A
HOH
33
3
HOH
HOH
1133
A
HOH
34
3
HOH
HOH
1134
A
HOH
35
3
HOH
HOH
1135
A
HOH
36
3
HOH
HOH
1136
A
HOH
37
3
HOH
HOH
1137
A
HOH
38
3
HOH
HOH
1138
A
HOH
39
3
HOH
HOH
1139
A
HOH
40
3
HOH
HOH
1140
A
HOH
41
3
HOH
HOH
1141
A
HOH
42
3
HOH
HOH
1142
A
HOH
43
3
HOH
HOH
1143
A
HOH
44
3
HOH
HOH
1144
A
HOH
45
3
HOH
HOH
1145
A
HOH
46
3
HOH
HOH
1146
A
HOH
47
3
HOH
HOH
1147
A
HOH
48
3
HOH
HOH
1148
A
HOH
49
3
HOH
HOH
1149
A
HOH
50
3
HOH
HOH
1150
A
HOH
51
3
HOH
HOH
1151
A
HOH
52
3
HOH
HOH
1152
A
HOH
53
3
HOH
HOH
1153
A
HOH
54
3
HOH
HOH
1154
A
HOH
55
3
HOH
HOH
1155
A
HOH
56
3
HOH
HOH
1156
A
HOH
57
3
HOH
HOH
1157
A
HOH
58
3
HOH
HOH
1158
A
HOH
59
3
HOH
HOH
1159
A
HOH
60
3
HOH
HOH
1160
A
HOH
61
3
HOH
HOH
1161
A
HOH
62
3
HOH
HOH
1162
A
HOH
63
3
HOH
HOH
1163
A
HOH
64
3
HOH
HOH
1164
A
HOH
65
3
HOH
HOH
1165
A
HOH
66
3
HOH
HOH
1166
A
HOH
1167
3
HOH
HOH
1167
A
HOH
68
3
HOH
HOH
1168
A
HOH
69
3
HOH
HOH
1169
A
HOH
70
3
HOH
HOH
1170
A
HOH
71
3
HOH
HOH
1171
A
HOH
72
3
HOH
HOH
1172
A
HOH
73
3
HOH
HOH
1173
A
HOH
74
3
HOH
HOH
1174
A
HOH
75
3
HOH
HOH
1175
A
HOH
76
3
HOH
HOH
1176
A
HOH
77
3
HOH
HOH
1177
A
HOH
78
3
HOH
HOH
1178
A
HOH
79
3
HOH
HOH
1179
A
HOH
80
3
HOH
HOH
1180
A
HOH
81
3
HOH
HOH
1181
A
HOH
82
3
HOH
HOH
1182
A
HOH
83
3
HOH
HOH
1183
A
HOH
84
3
HOH
HOH
1184
A
HOH
85
3
HOH
HOH
1185
A
HOH
86
3
HOH
HOH
1186
A
HOH
87
3
HOH
HOH
1187
A
HOH
88
3
HOH
HOH
1188
A
HOH
89
3
HOH
HOH
1189
A
HOH
90
3
HOH
HOH
1190
A
HOH
91
3
HOH
HOH
1191
A
HOH
92
3
HOH
HOH
1192
A
HOH
93
3
HOH
HOH
1193
A
HOH
94
3
HOH
HOH
1194
A
HOH
95
3
HOH
HOH
1195
A
HOH
96
3
HOH
HOH
1196
A
HOH
97
3
HOH
HOH
1197
A
HOH
98
3
HOH
HOH
1198
A
HOH
99
3
HOH
HOH
1199
A
HOH
100
3
HOH
HOH
1200
A
HOH
101
3
HOH
HOH
1201
A
HOH
102
3
HOH
HOH
1202
A
HOH
103
3
HOH
HOH
1203
A
HOH
104
3
HOH
HOH
1204
A
HOH
105
3
HOH
HOH
1205
A
HOH
106
3
HOH
HOH
1206
A
HOH
107
3
HOH
HOH
1207
A
HOH
108
3
HOH
HOH
1208
A
n
1
542
A
n
2
543
A
n
3
544
A
n
4
545
A
n
5
546
A
n
6
547
A
HIS
548
n
7
HIS
548
A
HIS
549
n
8
HIS
549
A
MET
550
n
9
MET
550
A
PRO
551
n
10
PRO
551
A
MET
552
n
11
MET
552
A
TYR
553
n
12
TYR
553
A
GLU
554
n
13
GLU
554
A
VAL
555
n
14
VAL
555
A
GLN
556
n
15
GLN
556
A
TRP
557
n
16
TRP
557
A
LYS
558
n
17
LYS
558
A
VAL
559
n
18
VAL
559
A
VAL
560
n
19
VAL
560
A
GLU
561
n
20
GLU
561
A
GLU
562
n
21
GLU
562
A
SER
563
n
22
SER
563
A
ASN
564
n
23
ASN
564
A
GLY
565
n
24
GLY
565
A
ASN
566
n
25
ASN
566
A
ASN
567
n
26
ASN
567
A
TYR
568
n
27
TYR
568
A
SER
569
n
28
SER
569
A
TYR
570
n
29
TYR
570
A
ILE
571
n
30
ILE
571
A
ASP
572
n
31
ASP
572
A
PRO
573
n
32
PRO
573
A
THR
574
n
33
THR
574
A
GLN
575
n
34
GLN
575
A
LEU
576
n
35
LEU
576
A
PRO
577
n
36
PRO
577
A
TYR
578
n
37
TYR
578
A
ASP
579
n
38
ASP
579
A
HIS
580
n
39
HIS
580
A
LYS
581
n
40
LYS
581
A
TRP
582
n
41
TRP
582
A
GLU
583
n
42
GLU
583
A
PHE
584
n
43
PHE
584
A
PRO
585
n
44
PRO
585
A
ARG
586
n
45
ARG
586
A
ASN
587
n
46
ASN
587
A
ARG
588
n
47
ARG
588
A
LEU
589
n
48
LEU
589
A
SER
590
n
49
SER
590
A
PHE
591
n
50
PHE
591
A
GLY
592
n
51
GLY
592
A
LYS
593
n
52
LYS
593
A
THR
594
n
53
THR
594
A
LEU
595
n
54
LEU
595
A
GLY
596
n
55
GLY
596
A
ALA
597
n
56
ALA
597
A
GLY
598
n
57
GLY
598
A
ALA
599
n
58
ALA
599
A
PHE
600
n
59
PHE
600
A
GLY
601
n
60
GLY
601
A
LYS
602
n
61
LYS
602
A
VAL
603
n
62
VAL
603
A
VAL
604
n
63
VAL
604
A
GLU
605
n
64
GLU
605
A
ALA
606
n
65
ALA
606
A
THR
607
n
66
THR
607
A
ALA
608
n
67
ALA
608
A
GLN
609
n
68
GLN
609
A
GLY
610
n
69
GLY
610
A
LEU
611
n
70
LEU
611
A
ILE
612
n
71
ILE
612
A
LYS
613
n
72
LYS
613
A
SER
614
n
73
SER
614
A
ASP
615
n
74
ASP
615
A
ALA
616
n
75
ALA
616
A
ALA
617
n
76
ALA
617
A
MET
618
n
77
MET
618
A
THR
619
n
78
THR
619
A
VAL
620
n
79
VAL
620
A
ALA
621
n
80
ALA
621
A
VAL
622
n
81
VAL
622
A
LYS
623
n
82
LYS
623
A
MET
624
n
83
MET
624
A
LEU
625
n
84
LEU
625
A
LYS
626
n
85
LYS
626
A
PRO
627
n
86
PRO
627
A
SER
628
n
87
SER
628
A
ALA
629
n
88
ALA
629
A
HIS
630
n
89
HIS
630
A
SER
631
n
90
SER
631
A
THR
632
n
91
THR
632
A
GLU
633
n
92
GLU
633
A
ARG
634
n
93
ARG
634
A
GLU
635
n
94
GLU
635
A
ALA
636
n
95
ALA
636
A
LEU
637
n
96
LEU
637
A
MET
638
n
97
MET
638
A
SER
639
n
98
SER
639
A
GLU
640
n
99
GLU
640
A
LEU
641
n
100
LEU
641
A
LYS
642
n
101
LYS
642
A
VAL
643
n
102
VAL
643
A
LEU
644
n
103
LEU
644
A
SER
645
n
104
SER
645
A
TYR
646
n
105
TYR
646
A
LEU
647
n
106
LEU
647
A
GLY
648
n
107
GLY
648
A
ASN
649
n
108
ASN
649
A
HIS
650
n
109
HIS
650
A
GLU
651
n
110
GLU
651
A
ASN
652
n
111
ASN
652
A
ILE
653
n
112
ILE
653
A
VAL
654
n
113
VAL
654
A
ASN
655
n
114
ASN
655
A
LEU
656
n
115
LEU
656
A
LEU
657
n
116
LEU
657
A
GLY
658
n
117
GLY
658
A
ALA
659
n
118
ALA
659
A
CYS
660
n
119
CYS
660
A
THR
661
n
120
THR
661
A
HIS
662
n
121
HIS
662
A
GLY
663
n
122
GLY
663
A
GLY
664
n
123
GLY
664
A
PRO
665
n
124
PRO
665
A
THR
666
n
125
THR
666
A
LEU
667
n
126
LEU
667
A
VAL
668
n
127
VAL
668
A
ILE
669
n
128
ILE
669
A
THR
670
n
129
THR
670
A
GLU
671
n
130
GLU
671
A
TYR
672
n
131
TYR
672
A
CYS
673
n
132
CYS
673
A
CYS
674
n
133
CYS
674
A
TYR
675
n
134
TYR
675
A
GLY
676
n
135
GLY
676
A
ASP
677
n
136
ASP
677
A
LEU
678
n
137
LEU
678
A
LEU
679
n
138
LEU
679
A
ASN
680
n
139
ASN
680
A
PHE
681
n
140
PHE
681
A
LEU
682
n
141
LEU
682
A
ARG
683
n
142
ARG
683
A
ARG
684
n
143
ARG
684
A
LYS
685
n
144
LYS
685
A
ARG
686
n
145
ARG
686
A
ASP
687
n
146
ASP
687
A
SER
688
n
147
SER
688
A
PHE
689
n
148
PHE
689
A
HIS
690
n
149
HIS
690
A
SER
691
n
150
SER
691
A
SER
692
n
151
SER
692
A
ASP
693
n
152
ASP
693
A
THR
694
n
153
THR
694
A
SER
753
n
154
SER
753
A
PRO
754
n
155
PRO
754
A
ALA
755
n
156
ALA
755
A
SER
756
n
157
SER
756
A
MET
757
n
158
MET
757
A
GLU
758
n
159
GLU
758
A
ASP
759
n
160
ASP
759
A
ASP
760
n
161
ASP
760
A
GLU
761
n
162
GLU
761
A
ASN
762
n
163
ASN
762
A
ALA
763
n
164
ALA
763
A
LEU
764
n
165
LEU
764
A
ASP
765
n
166
ASP
765
A
LEU
766
n
167
LEU
766
A
GLU
767
n
168
GLU
767
A
ASP
768
n
169
ASP
768
A
LEU
769
n
170
LEU
769
A
LEU
770
n
171
LEU
770
A
SER
771
n
172
SER
771
A
PHE
772
n
173
PHE
772
A
SER
773
n
174
SER
773
A
TYR
774
n
175
TYR
774
A
GLN
775
n
176
GLN
775
A
VAL
776
n
177
VAL
776
A
ALA
777
n
178
ALA
777
A
LYS
778
n
179
LYS
778
A
GLY
779
n
180
GLY
779
A
MET
780
n
181
MET
780
A
ALA
781
n
182
ALA
781
A
PHE
782
n
183
PHE
782
A
LEU
783
n
184
LEU
783
A
ALA
784
n
185
ALA
784
A
SER
785
n
186
SER
785
A
LYS
786
n
187
LYS
786
A
ASN
787
n
188
ASN
787
A
CYS
788
n
189
CYS
788
A
ILE
789
n
190
ILE
789
A
HIS
790
n
191
HIS
790
A
ARG
791
n
192
ARG
791
A
ASP
792
n
193
ASP
792
A
LEU
793
n
194
LEU
793
A
ALA
794
n
195
ALA
794
A
ALA
795
n
196
ALA
795
A
ARG
796
n
197
ARG
796
A
ASN
797
n
198
ASN
797
A
ILE
798
n
199
ILE
798
A
LEU
799
n
200
LEU
799
A
LEU
800
n
201
LEU
800
A
THR
801
n
202
THR
801
A
HIS
802
n
203
HIS
802
A
GLY
803
n
204
GLY
803
A
ARG
804
n
205
ARG
804
A
ILE
805
n
206
ILE
805
A
THR
806
n
207
THR
806
A
LYS
807
n
208
LYS
807
A
ILE
808
n
209
ILE
808
A
CYS
809
n
210
CYS
809
A
ASP
810
n
211
ASP
810
A
PHE
811
n
212
PHE
811
A
GLY
812
n
213
GLY
812
A
LEU
813
n
214
LEU
813
A
ALA
814
n
215
ALA
814
A
ARG
815
n
216
ARG
815
A
ASP
816
n
217
ASP
816
A
ILE
817
n
218
ILE
817
A
LYS
818
n
219
LYS
818
A
ASN
819
n
220
ASN
819
A
ASP
820
n
221
ASP
820
A
SER
821
n
222
SER
821
A
ASN
822
n
223
ASN
822
A
TYR
823
n
224
TYR
823
A
VAL
824
n
225
VAL
824
A
ASP
825
n
226
ASP
825
A
LYS
826
n
227
LYS
826
A
GLY
827
n
228
GLY
827
A
ASN
828
n
229
ASN
828
A
ALA
829
n
230
ALA
829
A
ARG
830
n
231
ARG
830
A
LEU
831
n
232
LEU
831
A
PRO
832
n
233
PRO
832
A
VAL
833
n
234
VAL
833
A
LYS
834
n
235
LYS
834
A
TRP
835
n
236
TRP
835
A
MET
836
n
237
MET
836
A
ALA
837
n
238
ALA
837
A
PRO
838
n
239
PRO
838
A
GLU
839
n
240
GLU
839
A
SER
840
n
241
SER
840
A
ILE
841
n
242
ILE
841
A
PHE
842
n
243
PHE
842
A
ASN
843
n
244
ASN
843
A
SER
844
n
245
SER
844
A
VAL
845
n
246
VAL
845
A
TYR
846
n
247
TYR
846
A
THR
847
n
248
THR
847
A
PHE
848
n
249
PHE
848
A
GLU
849
n
250
GLU
849
A
SER
850
n
251
SER
850
A
ASP
851
n
252
ASP
851
A
VAL
852
n
253
VAL
852
A
TRP
853
n
254
TRP
853
A
SER
854
n
255
SER
854
A
TYR
855
n
256
TYR
855
A
GLY
856
n
257
GLY
856
A
ILE
857
n
258
ILE
857
A
PHE
858
n
259
PHE
858
A
LEU
859
n
260
LEU
859
A
TRP
860
n
261
TRP
860
A
GLU
861
n
262
GLU
861
A
LEU
862
n
263
LEU
862
A
PHE
863
n
264
PHE
863
A
SER
864
n
265
SER
864
A
LEU
865
n
266
LEU
865
A
GLY
866
n
267
GLY
866
A
SER
867
n
268
SER
867
A
SER
868
n
269
SER
868
A
PRO
869
n
270
PRO
869
A
TYR
870
n
271
TYR
870
A
PRO
871
n
272
PRO
871
A
GLY
872
n
273
GLY
872
A
MET
873
n
274
MET
873
A
PRO
874
n
275
PRO
874
A
VAL
875
n
276
VAL
875
A
ASP
876
n
277
ASP
876
A
SER
877
n
278
SER
877
A
LYS
878
n
279
LYS
878
A
PHE
879
n
280
PHE
879
A
TYR
880
n
281
TYR
880
A
LYS
881
n
282
LYS
881
A
MET
882
n
283
MET
882
A
ILE
883
n
284
ILE
883
A
LYS
884
n
285
LYS
884
A
GLU
885
n
286
GLU
885
A
GLY
886
n
287
GLY
886
A
PHE
887
n
288
PHE
887
A
ARG
888
n
289
ARG
888
A
MET
889
n
290
MET
889
A
SER
890
n
291
SER
890
A
SER
891
n
292
SER
891
A
PRO
892
n
293
PRO
892
A
GLU
893
n
294
GLU
893
A
HIS
894
n
295
HIS
894
A
ALA
895
n
296
ALA
895
A
PRO
896
n
297
PRO
896
A
ALA
897
n
298
ALA
897
A
GLU
898
n
299
GLU
898
A
MET
899
n
300
MET
899
A
TYR
900
n
301
TYR
900
A
ASP
901
n
302
ASP
901
A
ILE
902
n
303
ILE
902
A
MET
903
n
304
MET
903
A
LYS
904
n
305
LYS
904
A
THR
905
n
306
THR
905
A
CYS
906
n
307
CYS
906
A
TRP
907
n
308
TRP
907
A
ASP
908
n
309
ASP
908
A
ALA
909
n
310
ALA
909
A
ASP
910
n
311
ASP
910
A
PRO
911
n
312
PRO
911
A
ASP
912
n
313
ASP
912
A
LYS
913
n
314
LYS
913
A
ARG
914
n
315
ARG
914
A
PRO
915
n
316
PRO
915
A
THR
916
n
317
THR
916
A
PHE
917
n
318
PHE
917
A
LYS
918
n
319
LYS
918
A
GLN
919
n
320
GLN
919
A
ILE
920
n
321
ILE
920
A
VAL
921
n
322
VAL
921
A
GLN
922
n
323
GLN
922
A
ASP
923
n
324
ASP
923
A
ILE
924
n
325
ILE
924
A
GLU
925
n
326
GLU
925
A
LYS
926
n
327
LYS
926
A
GLN
927
n
328
GLN
927
A
ILE
928
n
329
ILE
928
A
SER
929
n
330
SER
929
A
GLU
930
n
331
GLU
930
A
SER
931
n
332
SER
931
A
n
333
932
A
n
334
933
A
n
335
934
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1080
-12
28850
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
569
A
O
SER
28
A
N
GLU
561
A
N
GLU
20
A
N
LYS
558
A
N
LYS
17
A
O
ILE
789
A
O
ILE
190
A
N
GLY
592
A
N
GLY
51
A
O
GLU
605
A
O
GLU
64
A
N
LYS
602
A
N
LYS
61
A
O
MET
624
A
O
MET
83
A
N
ALA
621
A
N
ALA
80
A
O
THR
670
A
O
THR
129
A
O
ILE
669
A
O
ILE
128
A
N
LEU
657
A
N
LEU
116
A
N
HIS
690
A
N
HIS
149
A
O
LEU
764
A
O
LEU
165
A
N
LEU
799
A
N
LEU
200
A
O
LYS
807
A
O
LYS
208
A
N
VAL
824
A
N
VAL
225
A
O
LEU
831
A
O
LEU
232
1
A
HOH
1167
C
HOH
1
A
MET
542
A
MET
1
1
Y
1
A
GLY
543
A
GLY
2
1
Y
1
A
HIS
544
A
HIS
3
1
Y
1
A
HIS
545
A
HIS
4
1
Y
1
A
HIS
546
A
HIS
5
1
Y
1
A
HIS
547
A
HIS
6
1
Y
1
A
THR
932
A
THR
333
1
Y
1
A
ASN
933
A
ASN
334
1
Y
1
A
HIS
934
A
HIS
335
1
Y
1
A
ARG
588
0.140
SIDE CHAIN
1
A
SER
563
-113.37
-142.05
1
A
ASP
759
-114.23
76.24
1
A
ARG
791
77.34
-5.66
1
A
ASP
792
-145.03
42.20
1
A
ASN
828
-103.47
45.14
2.2674
0.0000
0.7502
-2.8198
0.0000
0.5524
0.2270
0.1990
0.2003
0.2003
1.900
52.7
1632
33573
33194
4.92
98.87
0.25
RANDOM
1
0.0
MOLECULAR REPLACEMENT
22.27
0.86
1.10
PDB ENTRY 1T45
ML
FLAT BULK SOLVENT MODEL
32.117
0.400
1.900
52.7
108
2728
28
0
2592
0.014
2689
1.411
3640
14.942
984
0.098
382
0.006
467
0.3390
0.2926
1.9559
139
2607
98.00
0.2606
0.2480
2.0191
154
2604
98.00
0.2984
0.2230
2.0912
157
2562
98.00
0.2178
0.2134
2.1750
124
2603
99.00
0.2583
0.2011
2.2740
132
2639
98.00
0.2099
0.2121
2.3939
132
2597
99.00
0.2290
0.2075
2.5438
123
2656
99.00
0.2649
0.2098
2.7402
117
2641
99.00
0.2259
0.2235
3.0160
133
2624
99.00
0.2205
0.2016
3.4523
160
2645
100.00
0.1975
0.1740
4.3493
134
2660
99.00
0.2106
0.1741
52.7343
127
2724
100.00
1.85
64.66
4HVS
36347
35908
-3.0
-3.0
1
98.8
1.85
1.95
1
98.8
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX647
1
N
N
2
N
N
3
N
N
A
HIS
549
A
HIS
8
HELX_P
A
TYR
553
A
TYR
12
5
1
5
A
ASP
572
A
ASP
31
HELX_P
A
LEU
576
A
LEU
35
5
2
5
A
ASP
579
A
ASP
38
HELX_P
A
GLU
583
A
GLU
42
5
3
5
A
PRO
585
A
PRO
44
HELX_P
A
ASN
587
A
ASN
46
5
4
3
A
HIS
630
A
HIS
89
HELX_P
A
GLY
648
A
GLY
107
1
5
19
A
ASP
677
A
ASP
136
HELX_P
A
ARG
686
A
ARG
145
1
6
10
A
SER
753
A
SER
154
HELX_P
A
MET
757
A
MET
158
5
7
5
A
ASP
759
A
ASP
160
HELX_P
A
ALA
763
A
ALA
164
5
8
5
A
LEU
766
A
LEU
167
HELX_P
A
LYS
786
A
LYS
187
1
9
21
A
ALA
794
A
ALA
195
HELX_P
A
ARG
796
A
ARG
197
5
10
3
A
PHE
811
A
PHE
212
HELX_P
A
ARG
815
A
ARG
216
5
11
5
A
ASP
816
A
ASP
217
HELX_P
A
ASP
820
A
ASP
221
5
12
5
A
PRO
832
A
PRO
233
HELX_P
A
MET
836
A
MET
237
5
13
5
A
ALA
837
A
ALA
238
HELX_P
A
SER
844
A
SER
245
1
14
8
A
THR
847
A
THR
248
HELX_P
A
SER
864
A
SER
265
1
15
18
A
ASP
876
A
ASP
277
HELX_P
A
GLU
885
A
GLU
286
1
16
10
A
PRO
896
A
PRO
297
HELX_P
A
TRP
907
A
TRP
308
1
17
12
A
ASP
910
A
ASP
311
HELX_P
A
ARG
914
A
ARG
315
5
18
5
A
THR
916
A
THR
317
HELX_P
A
GLU
930
A
GLU
331
1
19
15
TRANSFERASE/TRANSFERASE INHIBITOR
transferase, tyrosine-protein kinase, ATP-binding, kinase-kinase inhibitor complex, TRANSFERASE-TRANSFERASE INHIBITOR complex
KIT_HUMAN
UNP
1
551
P10721
PMYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH
LTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSK
ESSCSDSTNEYMDMKPGVSYVVPTKADKRRSVRIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIH
RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY
PGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNH
551
934
4HVS
551
934
P10721
A
1
10
335
1
expression tag
MET
542
4HVS
A
P10721
UNP
1
1
expression tag
GLY
543
4HVS
A
P10721
UNP
2
1
expression tag
HIS
544
4HVS
A
P10721
UNP
3
1
expression tag
HIS
545
4HVS
A
P10721
UNP
4
1
expression tag
HIS
546
4HVS
A
P10721
UNP
5
1
expression tag
HIS
547
4HVS
A
P10721
UNP
6
1
expression tag
HIS
548
4HVS
A
P10721
UNP
7
1
expression tag
HIS
549
4HVS
A
P10721
UNP
8
1
expression tag
MET
550
4HVS
A
P10721
UNP
9
1
ILE
engineered mutation
SER
563
4HVS
A
P10721
UNP
563
22
1
VAL
engineered mutation
SER
569
4HVS
A
P10721
UNP
569
28
1
TYR
engineered mutation
GLN
609
4HVS
A
P10721
UNP
609
68
1
LEU
engineered mutation
SER
631
4HVS
A
P10721
UNP
631
90
1
MET
engineered mutation
GLU
651
4HVS
A
P10721
UNP
651
110
1
ILE
engineered mutation
HIS
662
4HVS
A
P10721
UNP
662
121
1
ILE
engineered mutation
HIS
690
4HVS
A
P10721
UNP
690
149
1
CYS
engineered mutation
SER
691
4HVS
A
P10721
UNP
691
150
1
LYS
engineered mutation
ASP
693
4HVS
A
P10721
UNP
693
152
1
GLN
engineered mutation
THR
694
4HVS
A
P10721
UNP
694
153
1
GLU
engineered mutation
SER
753
4HVS
A
P10721
UNP
695
154
1
ASP
deletion
4HVS
A
P10721
UNP
696
1
HIS
deletion
4HVS
A
P10721
UNP
697
1
ALA
deletion
4HVS
A
P10721
UNP
698
1
GLU
deletion
4HVS
A
P10721
UNP
699
1
ALA
deletion
4HVS
A
P10721
UNP
700
1
ALA
deletion
4HVS
A
P10721
UNP
701
1
LEU
deletion
4HVS
A
P10721
UNP
702
1
TYR
deletion
4HVS
A
P10721
UNP
703
1
LYS
deletion
4HVS
A
P10721
UNP
704
1
ASN
deletion
4HVS
A
P10721
UNP
705
1
LEU
deletion
4HVS
A
P10721
UNP
706
1
LEU
deletion
4HVS
A
P10721
UNP
707
1
LYS
deletion
4HVS
A
P10721
UNP
710
1
GLU
deletion
4HVS
A
P10721
UNP
711
1
SER
deletion
4HVS
A
P10721
UNP
712
1
SER
deletion
4HVS
A
P10721
UNP
713
1
CYS
deletion
4HVS
A
P10721
UNP
714
1
SER
deletion
4HVS
A
P10721
UNP
717
1
THR
deletion
4HVS
A
P10721
UNP
718
1
ASN
deletion
4HVS
A
P10721
UNP
719
1
GLU
deletion
4HVS
A
P10721
UNP
720
1
TYR
deletion
4HVS
A
P10721
UNP
721
1
MET
deletion
4HVS
A
P10721
UNP
722
1
ASP
deletion
4HVS
A
P10721
UNP
723
1
MET
deletion
4HVS
A
P10721
UNP
724
1
LYS
deletion
4HVS
A
P10721
UNP
725
1
PRO
deletion
4HVS
A
P10721
UNP
726
1
GLY
deletion
4HVS
A
P10721
UNP
727
1
VAL
deletion
4HVS
A
P10721
UNP
728
1
SER
deletion
4HVS
A
P10721
UNP
729
1
TYR
deletion
4HVS
A
P10721
UNP
730
1
VAL
deletion
4HVS
A
P10721
UNP
731
1
VAL
deletion
4HVS
A
P10721
UNP
732
1
PRO
deletion
4HVS
A
P10721
UNP
733
1
LYS
deletion
4HVS
A
P10721
UNP
735
1
ALA
deletion
4HVS
A
P10721
UNP
736
1
ASP
deletion
4HVS
A
P10721
UNP
737
1
LYS
deletion
4HVS
A
P10721
UNP
738
1
ARG
deletion
4HVS
A
P10721
UNP
739
1
ARG
deletion
4HVS
A
P10721
UNP
740
1
SER
deletion
4HVS
A
P10721
UNP
741
1
VAL
deletion
4HVS
A
P10721
UNP
742
1
ARG
deletion
4HVS
A
P10721
UNP
743
1
ILE
deletion
4HVS
A
P10721
UNP
744
1
GLY
deletion
4HVS
A
P10721
UNP
745
1
TYR
deletion
4HVS
A
P10721
UNP
747
1
ILE
deletion
4HVS
A
P10721
UNP
748
1
GLU
deletion
4HVS
A
P10721
UNP
749
1
ARG
deletion
4HVS
A
P10721
UNP
750
1
ASP
deletion
4HVS
A
P10721
UNP
751
1
VAL
deletion
4HVS
A
P10721
UNP
752
1
THR
deletion
4HVS
A
P10721
UNP
753
1
ILE
engineered mutation
SER
756
4HVS
A
P10721
UNP
756
157
1
LEU
engineered mutation
ASN
762
4HVS
A
P10721
UNP
762
163
1
VAL
engineered mutation
ASP
825
4HVS
A
P10721
UNP
825
226
1
CYS
engineered mutation
SER
844
4HVS
A
P10721
UNP
844
245
1
LEU
engineered mutation
SER
890
4HVS
A
P10721
UNP
890
291
1
LEU
engineered mutation
ASP
912
4HVS
A
P10721
UNP
912
313
1
LEU
engineered mutation
ASP
923
4HVS
A
P10721
UNP
923
324
3
5
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
TYR
568
A
TYR
27
A
TYR
570
A
TYR
29
A
LYS
558
A
LYS
17
A
GLU
562
A
GLU
21
A
CYS
788
A
CYS
189
A
ILE
789
A
ILE
190
A
LEU
589
A
LEU
48
A
ALA
597
A
ALA
56
A
GLY
601
A
GLY
60
A
GLN
609
A
GLN
68
A
ALA
617
A
ALA
76
A
LEU
625
A
LEU
84
A
LEU
667
A
LEU
126
A
GLU
671
A
GLU
130
A
LEU
656
A
LEU
115
A
CYS
660
A
CYS
119
A
PHE
689
A
PHE
148
A
HIS
690
A
HIS
149
A
LEU
764
A
LEU
165
A
ASP
765
A
ASP
166
A
ILE
798
A
ILE
199
A
THR
801
A
THR
202
A
ILE
805
A
ILE
206
A
ILE
808
A
ILE
209
A
VAL
824
A
VAL
225
A
ASP
825
A
ASP
226
A
ARG
830
A
ARG
231
A
LEU
831
A
LEU
232
BINDING SITE FOR RESIDUE 647 A 1001
A
647
1001
Software
17
A
TRP
557
A
TRP
16
17
1_555
A
ALA
621
A
ALA
80
17
1_555
A
LYS
623
A
LYS
82
17
1_555
A
GLU
640
A
GLU
99
17
1_555
A
LEU
647
A
LEU
106
17
1_555
A
ILE
653
A
ILE
112
17
1_555
A
VAL
654
A
VAL
113
17
1_555
A
THR
670
A
THR
129
17
1_555
A
GLU
671
A
GLU
130
17
1_555
A
TYR
672
A
TYR
131
17
1_555
A
CYS
673
A
CYS
132
17
1_555
A
LEU
783
A
LEU
184
17
1_555
A
HIS
790
A
HIS
191
17
1_555
A
LEU
799
A
LEU
200
17
1_555
A
ILE
808
A
ILE
209
17
1_555
A
CYS
809
A
CYS
210
17
1_555
A
ASP
810
A
ASP
211
17
1_555
5
C 1 2 1