0.007974
0.000000
0.000000
0.000000
0.007974
0.000000
0.000000
0.000000
0.018328
0.00000
0.00000
0.00000
Redecke, L.
Nass, K.
DePonte, D.P.
White, T.A.
Rehders, D.
Barty, A.
Stellato, F.
Liang, M.
Barends, T.R.M.
Boutet, S.
Williams, G.W.
Messerschmidt, M.
Seibert, M.M.
Aquila, A.
Arnlund, D.
Bajt, S.
Barth, T.
Bogan, M.J.
Caleman, C.
Chao, T.-C.
Doak, R.B.
Fleckenstein, H.
Frank, M.
Fromme, R.
Galli, L.
Grotjohann, I.
Hunter, M.S.
Johansson, L.C.
Kassemeyer, S.
Katona, G.
Kirian, R.A.
Koopmann, R.
Kupitz, C.
Lomb, L.
Martin, A.V.
Mogk, S.
Neutze, R.
Shoemann, R.L.
Steinbrener, J.
Timneanu, N.
Wang, D.
Weierstall, U.
Zatsepin, N.A.
Spence, J.C.H.
Fromme, P.
Schlichting, I.
Duszenko, M.
Betzel, C.
Chapman, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
125.400
125.400
54.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
R
C
N
275
R
C
N
276
R
C
N
277
S
C
N
278
R
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
US
Science
SCIEAS
0038
0036-8075
339
227
230
10.1126/science.1229663
23196907
Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser.
2013
10.2210/pdb4hwy/pdb
pdb_00004hwy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
PIXEL
2011-02-01
Cornell-SLAC Pixel Array Detector
CXI
SINGLE WAVELENGTH
M
x-ray
1
1.32
1.0
CXI
SLAC LCLS
1.32
FREE ELECTRON LASER
SLAC LCLS BEAMLINE CXI
37259.688
Cysteine peptidase C (CPC)
3.4.22.-
1
man
polymer
586.542
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
98
nat
water
no
no
MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Trypanosoma brucei brucei strain 927/4 GUTat10.1
sample
Tb927.6.560
185431
Trypanosoma brucei brucei TREU927
7108
Spodoptera frugiperda
SF9
Virus
pFastBac1
293195
2.88
57.27
Crystallization in vivo within living SF9 insect cells
7.4
Spontaneous formation of needle-shaped microcrystals in Sf9 cells infected with recombinant baculovirus containing the gene encoding the pre-pro form of Trypanosoma brucei cathepsin B, pH 7.4, Crystallization in vivo within living SF9 insect cells, temperature 310.15K
310.15
diffrn_source
pdbx_unobs_or_zero_occ_atoms
diffrn_source
entity_src_gen
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Data collection
Advisory
Data collection
Data collection
Source and taxonomy
Atomic model
Data collection
Derived calculations
Structure summary
Advisory
Data collection
Database references
Refinement description
Structure summary
1
0
2012-12-05
1
1
2012-12-19
1
2
2013-01-23
1
3
2016-12-21
1
4
2017-11-15
1
5
2018-02-14
2
0
2020-07-29
2
1
2023-09-20
_diffrn_source.type
_diffrn_source.pdbx_synchrotron_beamline
_diffrn_source.pdbx_synchrotron_site
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_strain
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_scientific_name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
401
n
B
NAG
1
A
NAG
402
n
B
NAG
2
A
MAN
403
n
B
BMA
3
A
NAG
404
n
C
NAG
1
A
NAG
405
n
C
NAG
2
DManpb
b-D-mannopyranose
b-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2012-11-09
REL
REL
oligosaccharide
oligosaccharide
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}
2
PDB-CARE
LINUCS
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
n
n
n
n
n
HOH
water
3MOR
PDB entry 3MOR
PDB
experimental model
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
GLU
27
n
27
GLU
27
A
ASP
28
n
28
ASP
28
A
ALA
29
n
29
ALA
29
A
PRO
30
n
30
PRO
30
A
VAL
31
n
31
VAL
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
LYS
34
n
34
LYS
34
A
ALA
35
n
35
ALA
35
A
PHE
36
n
36
PHE
36
A
VAL
37
n
37
VAL
37
A
ASP
38
n
38
ASP
38
A
ARG
39
n
39
ARG
39
A
VAL
40
n
40
VAL
40
A
ASN
41
n
41
ASN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
GLY
46
n
46
GLY
46
A
ILE
47
n
47
ILE
47
A
TRP
48
n
48
TRP
48
A
LYS
49
n
49
LYS
49
A
ALA
50
n
50
ALA
50
A
LYS
51
n
51
LYS
51
A
TYR
52
n
52
TYR
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
MET
56
n
56
MET
56
A
GLN
57
n
57
GLN
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
THR
60
n
60
THR
60
A
LEU
61
n
61
LEU
61
A
ARG
62
n
62
ARG
62
A
GLU
63
n
63
GLU
63
A
ALA
64
n
64
ALA
64
A
LYS
65
n
65
LYS
65
A
ARG
66
n
66
ARG
66
A
LEU
67
n
67
LEU
67
A
ASN
68
n
68
ASN
68
A
GLY
69
n
69
GLY
69
A
VAL
70
n
70
VAL
70
A
ILE
71
n
71
ILE
71
A
LYS
72
n
72
LYS
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
n
77
77
A
n
78
78
A
ILE
79
n
79
ILE
79
A
LEU
80
n
80
LEU
80
A
PRO
81
n
81
PRO
81
A
LYS
82
n
82
LYS
82
A
ARG
83
n
83
ARG
83
A
ARG
84
n
84
ARG
84
A
PHE
85
n
85
PHE
85
A
THR
86
n
86
THR
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
GLU
89
n
89
GLU
89
A
ALA
90
n
90
ALA
90
A
ARG
91
n
91
ARG
91
A
ALA
92
n
92
ALA
92
A
PRO
93
n
93
PRO
93
A
LEU
94
n
94
LEU
94
A
PRO
95
n
95
PRO
95
A
SER
96
n
96
SER
96
A
SER
97
n
97
SER
97
A
PHE
98
n
98
PHE
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
ALA
101
n
101
ALA
101
A
GLU
102
n
102
GLU
102
A
ALA
103
n
103
ALA
103
A
TRP
104
n
104
TRP
104
A
PRO
105
n
105
PRO
105
A
ASN
106
n
106
ASN
106
A
CYS
107
n
107
CYS
107
A
PRO
108
n
108
PRO
108
A
THR
109
n
109
THR
109
A
ILE
110
n
110
ILE
110
A
PRO
111
n
111
PRO
111
A
GLN
112
n
112
GLN
112
A
ILE
113
n
113
ILE
113
A
ALA
114
n
114
ALA
114
A
ASP
115
n
115
ASP
115
A
GLN
116
n
116
GLN
116
A
SER
117
n
117
SER
117
A
ALA
118
n
118
ALA
118
A
CYS
119
n
119
CYS
119
A
GLY
120
n
120
GLY
120
A
SER
121
n
121
SER
121
A
CYS
122
n
122
CYS
122
A
TRP
123
n
123
TRP
123
A
ALA
124
n
124
ALA
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
ALA
128
n
128
ALA
128
A
SER
129
n
129
SER
129
A
ALA
130
n
130
ALA
130
A
MET
131
n
131
MET
131
A
SER
132
n
132
SER
132
A
ASP
133
n
133
ASP
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
CYS
136
n
136
CYS
136
A
THR
137
n
137
THR
137
A
MET
138
n
138
MET
138
A
GLY
139
n
139
GLY
139
A
GLY
140
n
140
GLY
140
A
VAL
141
n
141
VAL
141
A
GLN
142
n
142
GLN
142
A
ASP
143
n
143
ASP
143
A
VAL
144
n
144
VAL
144
A
HIS
145
n
145
HIS
145
A
ILE
146
n
146
ILE
146
A
SER
147
n
147
SER
147
A
ALA
148
n
148
ALA
148
A
GLY
149
n
149
GLY
149
A
ASP
150
n
150
ASP
150
A
LEU
151
n
151
LEU
151
A
LEU
152
n
152
LEU
152
A
ALA
153
n
153
ALA
153
A
CYS
154
n
154
CYS
154
A
CYS
155
n
155
CYS
155
A
SER
156
n
156
SER
156
A
ASP
157
n
157
ASP
157
A
CYS
158
n
158
CYS
158
A
GLY
159
n
159
GLY
159
A
ASP
160
n
160
ASP
160
A
GLY
161
n
161
GLY
161
A
CYS
162
n
162
CYS
162
A
ASN
163
n
163
ASN
163
A
GLY
164
n
164
GLY
164
A
GLY
165
n
165
GLY
165
A
ASP
166
n
166
ASP
166
A
PRO
167
n
167
PRO
167
A
ASP
168
n
168
ASP
168
A
ARG
169
n
169
ARG
169
A
ALA
170
n
170
ALA
170
A
TRP
171
n
171
TRP
171
A
ALA
172
n
172
ALA
172
A
TYR
173
n
173
TYR
173
A
PHE
174
n
174
PHE
174
A
SER
175
n
175
SER
175
A
SER
176
n
176
SER
176
A
THR
177
n
177
THR
177
A
GLY
178
n
178
GLY
178
A
LEU
179
n
179
LEU
179
A
VAL
180
n
180
VAL
180
A
SER
181
n
181
SER
181
A
ASP
182
n
182
ASP
182
A
TYR
183
n
183
TYR
183
A
CYS
184
n
184
CYS
184
A
GLN
185
n
185
GLN
185
A
PRO
186
n
186
PRO
186
A
TYR
187
n
187
TYR
187
A
PRO
188
n
188
PRO
188
A
PHE
189
n
189
PHE
189
A
PRO
190
n
190
PRO
190
A
HIS
191
n
191
HIS
191
A
CYS
192
n
192
CYS
192
A
SER
193
n
193
SER
193
A
HIS
194
n
194
HIS
194
A
HIS
195
n
195
HIS
195
A
SER
196
n
196
SER
196
A
LYS
197
n
197
LYS
197
A
SER
198
n
198
SER
198
A
LYS
199
n
199
LYS
199
A
ASN
200
n
200
ASN
200
A
GLY
201
n
201
GLY
201
A
TYR
202
n
202
TYR
202
A
PRO
203
n
203
PRO
203
A
PRO
204
n
204
PRO
204
A
CYS
205
n
205
CYS
205
A
SER
206
n
206
SER
206
A
GLN
207
n
207
GLN
207
A
PHE
208
n
208
PHE
208
A
ASN
209
n
209
ASN
209
A
PHE
210
n
210
PHE
210
A
ASP
211
n
211
ASP
211
A
THR
212
n
212
THR
212
A
PRO
213
n
213
PRO
213
A
LYS
214
n
214
LYS
214
A
CYS
215
n
215
CYS
215
A
ASN
216
n
216
ASN
216
A
TYR
217
n
217
TYR
217
A
THR
218
n
218
THR
218
A
CYS
219
n
219
CYS
219
A
ASP
220
n
220
ASP
220
A
ASP
221
n
221
ASP
221
A
PRO
222
n
222
PRO
222
A
THR
223
n
223
THR
223
A
ILE
224
n
224
ILE
224
A
PRO
225
n
225
PRO
225
A
VAL
226
n
226
VAL
226
A
VAL
227
n
227
VAL
227
A
ASN
228
n
228
ASN
228
A
TYR
229
n
229
TYR
229
A
ARG
230
n
230
ARG
230
A
SER
231
n
231
SER
231
A
TRP
232
n
232
TRP
232
A
THR
233
n
233
THR
233
A
SER
234
n
234
SER
234
A
TYR
235
n
235
TYR
235
A
ALA
236
n
236
ALA
236
A
LEU
237
n
237
LEU
237
A
GLN
238
n
238
GLN
238
A
GLY
239
n
239
GLY
239
A
GLU
240
n
240
GLU
240
A
ASP
241
n
241
ASP
241
A
ASP
242
n
242
ASP
242
A
TYR
243
n
243
TYR
243
A
MET
244
n
244
MET
244
A
ARG
245
n
245
ARG
245
A
GLU
246
n
246
GLU
246
A
LEU
247
n
247
LEU
247
A
PHE
248
n
248
PHE
248
A
PHE
249
n
249
PHE
249
A
ARG
250
n
250
ARG
250
A
GLY
251
n
251
GLY
251
A
PRO
252
n
252
PRO
252
A
PHE
253
n
253
PHE
253
A
GLU
254
n
254
GLU
254
A
VAL
255
n
255
VAL
255
A
ALA
256
n
256
ALA
256
A
PHE
257
n
257
PHE
257
A
ASP
258
n
258
ASP
258
A
VAL
259
n
259
VAL
259
A
TYR
260
n
260
TYR
260
A
GLU
261
n
261
GLU
261
A
ASP
262
n
262
ASP
262
A
PHE
263
n
263
PHE
263
A
ILE
264
n
264
ILE
264
A
ALA
265
n
265
ALA
265
A
TYR
266
n
266
TYR
266
A
ASN
267
n
267
ASN
267
A
SER
268
n
268
SER
268
A
GLY
269
n
269
GLY
269
A
VAL
270
n
270
VAL
270
A
TYR
271
n
271
TYR
271
A
HIS
272
n
272
HIS
272
A
HIS
273
n
273
HIS
273
A
VAL
274
n
274
VAL
274
A
SER
275
n
275
SER
275
A
GLY
276
n
276
GLY
276
A
GLN
277
n
277
GLN
277
A
TYR
278
n
278
TYR
278
A
LEU
279
n
279
LEU
279
A
GLY
280
n
280
GLY
280
A
GLY
281
n
281
GLY
281
A
HIS
282
n
282
HIS
282
A
ALA
283
n
283
ALA
283
A
VAL
284
n
284
VAL
284
A
ARG
285
n
285
ARG
285
A
LEU
286
n
286
LEU
286
A
VAL
287
n
287
VAL
287
A
GLY
288
n
288
GLY
288
A
TRP
289
n
289
TRP
289
A
GLY
290
n
290
GLY
290
A
THR
291
n
291
THR
291
A
SER
292
n
292
SER
292
A
ASN
293
n
293
ASN
293
A
GLY
294
n
294
GLY
294
A
VAL
295
n
295
VAL
295
A
PRO
296
n
296
PRO
296
A
TYR
297
n
297
TYR
297
A
TRP
298
n
298
TRP
298
A
LYS
299
n
299
LYS
299
A
ILE
300
n
300
ILE
300
A
ALA
301
n
301
ALA
301
A
ASN
302
n
302
ASN
302
A
SER
303
n
303
SER
303
A
TRP
304
n
304
TRP
304
A
ASN
305
n
305
ASN
305
A
THR
306
n
306
THR
306
A
GLU
307
n
307
GLU
307
A
TRP
308
n
308
TRP
308
A
GLY
309
n
309
GLY
309
A
MET
310
n
310
MET
310
A
ASP
311
n
311
ASP
311
A
GLY
312
n
312
GLY
312
A
TYR
313
n
313
TYR
313
A
PHE
314
n
314
PHE
314
A
LEU
315
n
315
LEU
315
A
ILE
316
n
316
ILE
316
A
ARG
317
n
317
ARG
317
A
ARG
318
n
318
ARG
318
A
GLY
319
n
319
GLY
319
A
SER
320
n
320
SER
320
A
SER
321
n
321
SER
321
A
GLU
322
n
322
GLU
322
A
CYS
323
n
323
CYS
323
A
GLY
324
n
324
GLY
324
A
ILE
325
n
325
ILE
325
A
GLU
326
n
326
GLU
326
A
ASP
327
n
327
ASP
327
A
GLY
328
n
328
GLY
328
A
GLY
329
n
329
GLY
329
A
SER
330
n
330
SER
330
A
ALA
331
n
331
ALA
331
A
GLY
332
n
332
GLY
332
A
ILE
333
n
333
ILE
333
A
PRO
334
n
334
PRO
334
A
LEU
335
n
335
LEU
335
A
ALA
336
n
336
ALA
336
A
PRO
337
n
337
PRO
337
A
ASN
338
n
338
ASN
338
A
THR
339
n
339
THR
339
A
ALA
340
n
340
ALA
340
A
author_defined_assembly
1
monomeric
A
ASN
216
GLYCOSYLATION SITE
A
ASN
216
ASN
A
ASN
58
GLYCOSYLATION SITE
A
ASN
58
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
49
A
N
LYS
49
A
O
SER
268
A
O
SER
268
A
N
TYR
271
A
N
TYR
271
A
O
ARG
317
A
O
ARG
317
A
O
PHE
314
A
O
PHE
314
A
N
ILE
300
A
N
ILE
300
A
O
ALA
301
A
O
ALA
301
A
N
ARG
285
A
N
ARG
285
A
O
TRP
289
A
O
TRP
289
A
N
PHE
98
A
N
PHE
98
A
N
LYS
49
A
N
LYS
49
A
O
SER
268
A
O
SER
268
A
N
TYR
271
A
N
TYR
271
A
O
ARG
317
A
O
ARG
317
A
O
PHE
314
A
O
PHE
314
A
N
ILE
300
A
N
ILE
300
A
O
ALA
301
A
O
ALA
301
A
N
ARG
285
A
N
ARG
285
A
O
LEU
279
A
O
LEU
279
A
N
VAL
259
A
N
VAL
259
A
N
GLU
254
A
N
GLU
254
A
O
SER
330
A
O
SER
330
A
O
GLY
329
A
O
GLY
329
A
N
LEU
237
A
N
LEU
237
1
A
HOH
501
D
HOH
1
A
HOH
590
D
HOH
1
A
CD
LYS
34
A
CD
LYS
34
0
Y
1
A
CE
LYS
34
A
CE
LYS
34
0
Y
1
A
NZ
LYS
34
A
NZ
LYS
34
0
Y
1
A
NE
ARG
45
A
NE
ARG
45
0
Y
1
A
CZ
ARG
45
A
CZ
ARG
45
0
Y
1
A
NH1
ARG
45
A
NH1
ARG
45
0
Y
1
A
NH2
ARG
45
A
NH2
ARG
45
0
Y
1
A
CG
LYS
49
A
CG
LYS
49
0
Y
1
A
CD
LYS
49
A
CD
LYS
49
0
Y
1
A
CE
LYS
49
A
CE
LYS
49
0
Y
1
A
NZ
LYS
49
A
NZ
LYS
49
0
Y
1
A
CD
LYS
82
A
CD
LYS
82
0
Y
1
A
CE
LYS
82
A
CE
LYS
82
0
Y
1
A
NZ
LYS
82
A
NZ
LYS
82
0
Y
1
A
NE
ARG
84
A
NE
ARG
84
0
Y
1
A
CZ
ARG
84
A
CZ
ARG
84
0
Y
1
A
NH1
ARG
84
A
NH1
ARG
84
0
Y
1
A
NH2
ARG
84
A
NH2
ARG
84
0
Y
1
A
CD
GLU
87
A
CD
GLU
87
0
Y
1
A
OE1
GLU
87
A
OE1
GLU
87
0
Y
1
A
OE2
GLU
87
A
OE2
GLU
87
0
Y
1
A
CG
LYS
197
A
CG
LYS
197
0
Y
1
A
CD
LYS
197
A
CD
LYS
197
0
Y
1
A
CE
LYS
197
A
CE
LYS
197
0
Y
1
A
NZ
LYS
197
A
NZ
LYS
197
0
Y
1
A
CG
LYS
199
A
CG
LYS
199
0
Y
1
A
CD
LYS
199
A
CD
LYS
199
0
Y
1
A
CE
LYS
199
A
CE
LYS
199
0
Y
1
A
NZ
LYS
199
A
NZ
LYS
199
0
Y
1
A
OD1
ASN
209
A
OD1
ASN
209
0
Y
1
A
ND2
ASN
209
A
ND2
ASN
209
0
Y
1
A
OD1
ASP
211
A
OD1
ASP
211
0
Y
1
A
OD2
ASP
211
A
OD2
ASP
211
0
Y
1
A
CE
LYS
214
A
CE
LYS
214
0
Y
1
A
NZ
LYS
214
A
NZ
LYS
214
0
Y
1
A
OE1
GLN
238
A
OE1
GLN
238
0
Y
1
A
NE2
GLN
238
A
NE2
GLN
238
0
Y
1
A
NE
ARG
317
A
NE
ARG
317
0
Y
1
A
CZ
ARG
317
A
CZ
ARG
317
0
Y
1
A
NH1
ARG
317
A
NH1
ARG
317
0
Y
1
A
NH2
ARG
317
A
NH2
ARG
317
0
Y
1
B
C6
NAG
2
B
C6
NAG
0
N
1
B
O6
NAG
2
B
O6
NAG
0
N
1
C
C6
NAG
1
C
C6
NAG
0
N
1
C
O6
NAG
1
C
O6
NAG
0
N
1
C
C6
NAG
2
C
C6
NAG
0
N
1
C
O4
NAG
2
C
O4
NAG
0
N
1
C
O6
NAG
2
C
O6
NAG
0
N
1
A
MET
1
A
MET
1
1
Y
1
A
HIS
2
A
HIS
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
MET
4
A
MET
4
1
Y
1
A
ARG
5
A
ARG
5
1
Y
1
A
ALA
6
A
ALA
6
1
Y
1
A
CYS
7
A
CYS
7
1
Y
1
A
ILE
8
A
ILE
8
1
Y
1
A
THR
9
A
THR
9
1
Y
1
A
PHE
10
A
PHE
10
1
Y
1
A
CYS
11
A
CYS
11
1
Y
1
A
ILE
12
A
ILE
12
1
Y
1
A
ALA
13
A
ALA
13
1
Y
1
A
SER
14
A
SER
14
1
Y
1
A
THR
15
A
THR
15
1
Y
1
A
ALA
16
A
ALA
16
1
Y
1
A
VAL
17
A
VAL
17
1
Y
1
A
VAL
18
A
VAL
18
1
Y
1
A
ALA
19
A
ALA
19
1
Y
1
A
VAL
20
A
VAL
20
1
Y
1
A
ASN
21
A
ASN
21
1
Y
1
A
ALA
22
A
ALA
22
1
Y
1
A
ALA
23
A
ALA
23
1
Y
1
A
LEU
24
A
LEU
24
1
Y
1
A
VAL
25
A
VAL
25
1
Y
1
A
ALA
26
A
ALA
26
1
Y
1
A
LYS
73
A
LYS
73
1
Y
1
A
ASN
74
A
ASN
74
1
Y
1
A
ASN
75
A
ASN
75
1
Y
1
A
ASN
76
A
ASN
76
1
Y
1
A
ALA
77
A
ALA
77
1
Y
1
A
SER
78
A
SER
78
1
Y
1
A
ASN
209
0.131
SIDE CHAIN
1
A
ASP
53
-96.41
40.33
1
A
TRP
104
-116.73
74.59
1
A
SER
117
66.05
-158.66
1
A
ASP
143
-150.71
73.98
1
A
ASN
293
35.04
55.64
1
A
ASN
305
63.43
177.14
1
A
SER
321
31.93
54.15
1
A
ASN
338
55.03
-135.93
46.244
0.36
0.00
-0.00
0.36
0.00
-0.72
0.964
0.957
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.21308
0.18181
0.18335
2.10
88.67
1321
24648
24648
5.1
99.99
4.531
0.113
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.161
0.145
0.80
0.80
1.20
PDB entry 3MOR
MAXIMUM LIKELIHOOD
MASK
2.10
88.67
98
2551
67
0
2386
0.013
0.020
2486
1.540
1.952
3396
6.964
5.000
306
33.250
23.661
112
15.671
15.000
329
21.773
15.000
13
0.122
0.200
354
0.012
0.021
1965
0.368
0.317
2.155
90
1612
20
100.00
2.1
20
4HWY
25969
25969
0
0
1
100
2.1
2.175
1
100
data collection
CXI
DAQ
phasing
MOLREP
refinement
REFMAC
5.6.0117
data reduction
CrystFEL
data scaling
CrystFEL
Trypanosoma brucei procathepsin B solved from 40 fs free-electron laser pulse data by serial femtosecond X-ray crystallography
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
33
A
SER
33
HELX_P
A
ASN
44
A
ASN
44
1
1
12
A
THR
60
A
THR
60
HELX_P
A
LEU
67
A
LEU
67
1
2
8
A
THR
86
A
THR
86
HELX_P
A
ALA
92
A
ALA
92
1
3
7
A
SER
100
A
SER
100
HELX_P
A
TRP
104
A
TRP
104
1
4
5
A
SER
121
A
SER
121
HELX_P
A
MET
138
A
MET
138
1
5
18
A
SER
147
A
SER
147
HELX_P
A
CYS
155
A
CYS
155
1
6
9
A
SER
156
A
SER
156
HELX_P
A
GLY
159
A
GLY
159
5
7
4
A
ASP
160
A
ASP
160
HELX_P
A
GLY
164
A
GLY
164
5
8
5
A
ASP
166
A
ASP
166
HELX_P
A
THR
177
A
THR
177
1
9
12
A
PRO
204
A
PRO
204
HELX_P
A
PHE
208
A
PHE
208
5
10
5
A
GLY
239
A
GLY
239
HELX_P
A
GLY
251
A
GLY
251
1
11
13
A
GLU
261
A
GLU
261
HELX_P
A
ALA
265
A
ALA
265
1
12
5
A
SER
321
A
SER
321
HELX_P
A
ILE
325
A
ILE
325
5
13
5
disulf
2.081
A
CYS
107
A
SG
CYS
107
1_555
A
CYS
136
A
SG
CYS
136
1_555
disulf
2.051
A
CYS
119
A
SG
CYS
119
1_555
A
CYS
162
A
SG
CYS
162
1_555
disulf
2.031
A
CYS
154
A
SG
CYS
154
1_555
A
CYS
215
A
SG
CYS
215
1_555
disulf
2.020
A
CYS
155
A
SG
CYS
155
1_555
A
CYS
158
A
SG
CYS
158
1_555
disulf
2.051
A
CYS
184
A
SG
CYS
184
1_555
A
CYS
219
A
SG
CYS
219
1_555
disulf
2.043
A
CYS
192
A
SG
CYS
192
1_555
A
CYS
205
A
SG
CYS
205
1_555
covale
1.438
one
N-Glycosylation
A
ASN
58
A
ND2
ASN
58
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.418
one
N-Glycosylation
A
ASN
216
A
ND2
ASN
216
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.413
both
sing
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.435
both
B
NAG
2
B
O4
NAG
1_555
B
BMA
3
B
C1
BMA
1_555
covale
1.433
both
sing
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
HYDROLASE
Papain fold, Lysosomal cysteine protease, HYDROLASE
D6XHE1_TRYB2
UNP
1
1
D6XHE1
MHLMRACITFCIASTAVVAVNAALVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASIL
PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD
GCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGE
DDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS
SECGIEDGGSAGIPLAPNTA
1
340
4HWY
1
340
D6XHE1
A
1
1
340
6
8
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
48
A
TRP
48
A
ALA
50
A
ALA
50
A
TYR
266
A
TYR
266
A
TYR
271
A
TYR
271
A
TYR
313
A
TYR
313
A
ARG
317
A
ARG
317
A
VAL
295
A
VAL
295
A
ALA
301
A
ALA
301
A
TYR
278
A
TYR
278
A
SER
292
A
SER
292
A
PHE
98
A
PHE
98
A
ASP
99
A
ASP
99
A
TRP
48
A
TRP
48
A
ALA
50
A
ALA
50
A
TYR
266
A
TYR
266
A
TYR
271
A
TYR
271
A
TYR
313
A
TYR
313
A
ARG
317
A
ARG
317
A
VAL
295
A
VAL
295
A
ALA
301
A
ALA
301
A
TYR
278
A
TYR
278
A
SER
292
A
SER
292
A
PHE
253
A
PHE
253
A
TYR
260
A
TYR
260
A
GLY
329
A
GLY
329
A
PRO
334
A
PRO
334
A
SER
231
A
SER
231
A
LEU
237
A
LEU
237
94
P 42 21 2