0.008810
0.000000
0.001133
0.000000
0.025006
0.000000
0.000000
0.000000
0.008830
0.000000
0.000000
0.000000
Capodagli, G.C.
Pegan, S.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
97.330
90.000
113.508
39.991
114.189
C3 H9 N
59.110
3-AMINOPROPANE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
87
3815
3827
10.1128/JVI.03252-12
23345508
Diversity of Ubiquitin and ISG15 Specificity among Nairoviruses' Viral Ovarian Tumor Domain Proteases.
2013
100
1
CCD
2012-04-04
NOIR-1
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
4.2.2
ALS
1.00
SYNCHROTRON
ALS BEAMLINE 4.2.2
8519.778
Polyubiquitin-C
3.4.19.12
2
man
polymer
20011.406
RNA-directed RNA polymerase L
3.4.19.12, 2.7.7.48
2
man
polymer
59.110
3-AMINOPROPANE
2
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
46
nat
water
Ubiquitin
Protein L, Large structural protein, Replicase, Transcriptase, Ubiquitin thioesterase, RNA-directed RNA polymerase
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
A,C
polypeptide(L)
no
no
DFLDSLIWERVVDEQYITNPTFCVSDYFEVIRQPGDGNCFYHSIAELFFDVKTPSSFRKVKEHLQLAAEVYYDTEPEAVG
TGISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNSTEQVTAAIKFGPGRVSTALNLMHVGRTHFDALRIIEQL
ENNQPQDRHHHHHH
DFLDSLIWERVVDEQYITNPTFCVSDYFEVIRQPGDGNCFYHSIAELFFDVKTPSSFRKVKEHLQLAAEVYYDTEPEAVG
TGISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNSTEQVTAAIKFGPGRVSTALNLMHVGRTHFDALRIIEQL
ENNQPQDRHHHHHH
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UBC
9606
Homo sapiens
469008
Escherichia coli
BL21 (DE3) CodonPlus
PLASMID
pTyB2
DUGV
sample
L
766194
Dugbe virus (isolate ArD44313)
469008
Escherichia coli
BL21 (DE3)
PLASMID
pet11a
1
2.25
45.39
VAPOR DIFFUSION, HANGING DROP
5.5
0.25 M LiSO4, 0.10 M Bis-Tris, 29% PEG 3350, 40% (v/v) 1,3-butanediol , pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
repository
Initial release
Database references
Refinement description
1
0
2013-02-13
1
1
2013-04-24
1
2
2017-11-15
RCSB
Y
RCSB
2012-11-09
REL
REL
3CN
3-AMINOPROPANE
SO4
SULFATE ION
HOH
water
3-AMINOPROPANE WAS COVALENTLY ADDED TO THE C-TERMINUS OF UBIQUITIN THROUGH USE OF INTERN CHEMISTRY BY COMPLEXING THE THIOESTERIFIED UBIQUITIN PROTEIN TOGETHER WITH 3-BROMOPROPYLAMINE AS PER WILKINSON, K. D., T. GAN-ERDENE, AND N. KOLLI. 2005. DERIVITIZATION OF THE C-TERMINUS OF UBIQUITIN AND UBIQUITIN-LIKE PROTEINS USING INTEIN CHEMISTRY: METHODS AND USES. METHODS ENZYMOL 399:37-51.
3CN
76
3
3CN
3CN
101
A
SO4
2
4
SO4
SO4
102
A
3CN
76
3
3CN
3CN
101
C
SO4
1
4
SO4
SO4
102
C
SO4
3
4
SO4
SO4
201
D
HOH
2
5
HOH
HOH
201
A
HOH
3
5
HOH
HOH
202
A
HOH
32
5
HOH
HOH
203
A
HOH
33
5
HOH
HOH
204
A
HOH
34
5
HOH
HOH
205
A
HOH
36
5
HOH
HOH
206
A
HOH
37
5
HOH
HOH
207
A
HOH
43
5
HOH
HOH
208
A
HOH
45
5
HOH
HOH
209
A
HOH
4
5
HOH
HOH
201
B
HOH
8
5
HOH
HOH
202
B
HOH
11
5
HOH
HOH
203
B
HOH
12
5
HOH
HOH
204
B
HOH
13
5
HOH
HOH
205
B
HOH
17
5
HOH
HOH
206
B
HOH
24
5
HOH
HOH
207
B
HOH
25
5
HOH
HOH
208
B
HOH
26
5
HOH
HOH
209
B
HOH
29
5
HOH
HOH
210
B
HOH
31
5
HOH
HOH
211
B
HOH
35
5
HOH
HOH
212
B
HOH
38
5
HOH
HOH
213
B
HOH
39
5
HOH
HOH
214
B
HOH
44
5
HOH
HOH
215
B
HOH
46
5
HOH
HOH
216
B
HOH
6
5
HOH
HOH
201
C
HOH
9
5
HOH
HOH
202
C
HOH
14
5
HOH
HOH
203
C
HOH
15
5
HOH
HOH
204
C
HOH
18
5
HOH
HOH
205
C
HOH
20
5
HOH
HOH
206
C
HOH
22
5
HOH
HOH
207
C
HOH
28
5
HOH
HOH
208
C
HOH
41
5
HOH
HOH
209
C
HOH
1
5
HOH
HOH
301
D
HOH
5
5
HOH
HOH
302
D
HOH
7
5
HOH
HOH
303
D
HOH
10
5
HOH
HOH
304
D
HOH
16
5
HOH
HOH
305
D
HOH
19
5
HOH
HOH
306
D
HOH
21
5
HOH
HOH
307
D
HOH
23
5
HOH
HOH
308
D
HOH
27
5
HOH
HOH
309
D
HOH
30
5
HOH
HOH
310
D
HOH
40
5
HOH
HOH
311
D
HOH
42
5
HOH
HOH
312
D
2.830
2.830
48.020
48.020
Phaser MODE: MR_AUTO
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
ASP
2
n
1
ASP
2
B
PHE
3
n
2
PHE
3
B
LEU
4
n
3
LEU
4
B
ASP
5
n
4
ASP
5
B
SER
6
n
5
SER
6
B
LEU
7
n
6
LEU
7
B
ILE
8
n
7
ILE
8
B
TRP
9
n
8
TRP
9
B
GLU
10
n
9
GLU
10
B
ARG
11
n
10
ARG
11
B
VAL
12
n
11
VAL
12
B
VAL
13
n
12
VAL
13
B
ASP
14
n
13
ASP
14
B
GLU
15
n
14
GLU
15
B
GLN
16
n
15
GLN
16
B
TYR
17
n
16
TYR
17
B
ILE
18
n
17
ILE
18
B
THR
19
n
18
THR
19
B
ASN
20
n
19
ASN
20
B
PRO
21
n
20
PRO
21
B
THR
22
n
21
THR
22
B
PHE
23
n
22
PHE
23
B
CYS
24
n
23
CYS
24
B
VAL
25
n
24
VAL
25
B
SER
26
n
25
SER
26
B
ASP
27
n
26
ASP
27
B
TYR
28
n
27
TYR
28
B
PHE
29
n
28
PHE
29
B
GLU
30
n
29
GLU
30
B
VAL
31
n
30
VAL
31
B
ILE
32
n
31
ILE
32
B
ARG
33
n
32
ARG
33
B
GLN
34
n
33
GLN
34
B
PRO
35
n
34
PRO
35
B
GLY
36
n
35
GLY
36
B
ASP
37
n
36
ASP
37
B
GLY
38
n
37
GLY
38
B
ASN
39
n
38
ASN
39
B
CYS
40
n
39
CYS
40
B
PHE
41
n
40
PHE
41
B
TYR
42
n
41
TYR
42
B
HIS
43
n
42
HIS
43
B
SER
44
n
43
SER
44
B
ILE
45
n
44
ILE
45
B
ALA
46
n
45
ALA
46
B
GLU
47
n
46
GLU
47
B
LEU
48
n
47
LEU
48
B
PHE
49
n
48
PHE
49
B
PHE
50
n
49
PHE
50
B
ASP
51
n
50
ASP
51
B
VAL
52
n
51
VAL
52
B
LYS
53
n
52
LYS
53
B
THR
54
n
53
THR
54
B
PRO
55
n
54
PRO
55
B
SER
56
n
55
SER
56
B
SER
57
n
56
SER
57
B
PHE
58
n
57
PHE
58
B
ARG
59
n
58
ARG
59
B
LYS
60
n
59
LYS
60
B
VAL
61
n
60
VAL
61
B
LYS
62
n
61
LYS
62
B
GLU
63
n
62
GLU
63
B
HIS
64
n
63
HIS
64
B
LEU
65
n
64
LEU
65
B
GLN
66
n
65
GLN
66
B
LEU
67
n
66
LEU
67
B
ALA
68
n
67
ALA
68
B
ALA
69
n
68
ALA
69
B
GLU
70
n
69
GLU
70
B
VAL
71
n
70
VAL
71
B
TYR
72
n
71
TYR
72
B
TYR
73
n
72
TYR
73
B
ASP
74
n
73
ASP
74
B
THR
75
n
74
THR
75
B
GLU
76
n
75
GLU
76
B
PRO
77
n
76
PRO
77
B
GLU
78
n
77
GLU
78
B
ALA
79
n
78
ALA
79
B
VAL
80
n
79
VAL
80
B
GLY
81
n
80
GLY
81
B
THR
82
n
81
THR
82
B
GLY
83
n
82
GLY
83
B
ILE
84
n
83
ILE
84
B
SER
85
n
84
SER
85
B
LYS
86
n
85
LYS
86
B
ASP
87
n
86
ASP
87
B
GLU
88
n
87
GLU
88
B
TYR
89
n
88
TYR
89
B
ILE
90
n
89
ILE
90
B
LYS
91
n
90
LYS
91
B
VAL
92
n
91
VAL
92
B
ALA
93
n
92
ALA
93
B
MET
94
n
93
MET
94
B
LYS
95
n
94
LYS
95
B
ASP
96
n
95
ASP
96
B
ASN
97
n
96
ASN
97
B
GLU
98
n
97
GLU
98
B
TRP
99
n
98
TRP
99
B
GLY
100
n
99
GLY
100
B
GLY
101
n
100
GLY
101
B
SER
102
n
101
SER
102
B
LEU
103
n
102
LEU
103
B
GLU
104
n
103
GLU
104
B
ALA
105
n
104
ALA
105
B
SER
106
n
105
SER
106
B
MET
107
n
106
MET
107
B
LEU
108
n
107
LEU
108
B
SER
109
n
108
SER
109
B
LYS
110
n
109
LYS
110
B
HIS
111
n
110
HIS
111
B
LEU
112
n
111
LEU
112
B
GLN
113
n
112
GLN
113
B
THR
114
n
113
THR
114
B
THR
115
n
114
THR
115
B
ILE
116
n
115
ILE
116
B
ILE
117
n
116
ILE
117
B
LEU
118
n
117
LEU
118
B
TRP
119
n
118
TRP
119
B
VAL
120
n
119
VAL
120
B
VAL
121
n
120
VAL
121
B
ASN
122
n
121
ASN
122
B
SER
123
n
122
SER
123
B
THR
124
n
123
THR
124
B
GLU
125
n
124
GLU
125
B
GLN
126
n
125
GLN
126
B
VAL
127
n
126
VAL
127
B
THR
128
n
127
THR
128
B
ALA
129
n
128
ALA
129
B
ALA
130
n
129
ALA
130
B
ILE
131
n
130
ILE
131
B
LYS
132
n
131
LYS
132
B
PHE
133
n
132
PHE
133
B
GLY
134
n
133
GLY
134
B
PRO
135
n
134
PRO
135
B
GLY
136
n
135
GLY
136
B
ARG
137
n
136
ARG
137
B
VAL
138
n
137
VAL
138
B
SER
139
n
138
SER
139
B
THR
140
n
139
THR
140
B
ALA
141
n
140
ALA
141
B
LEU
142
n
141
LEU
142
B
ASN
143
n
142
ASN
143
B
LEU
144
n
143
LEU
144
B
MET
145
n
144
MET
145
B
HIS
146
n
145
HIS
146
B
VAL
147
n
146
VAL
147
B
GLY
148
n
147
GLY
148
B
ARG
149
n
148
ARG
149
B
THR
150
n
149
THR
150
B
HIS
151
n
150
HIS
151
B
PHE
152
n
151
PHE
152
B
ASP
153
n
152
ASP
153
B
ALA
154
n
153
ALA
154
B
LEU
155
n
154
LEU
155
B
ARG
156
n
155
ARG
156
B
ILE
157
n
156
ILE
157
B
ILE
158
n
157
ILE
158
B
n
158
159
B
n
159
160
B
n
160
161
B
n
161
162
B
n
162
163
B
n
163
164
B
n
164
165
B
n
165
166
B
n
166
167
B
n
167
168
B
n
168
169
B
n
169
170
B
n
170
171
B
n
171
172
B
n
172
173
B
n
173
174
B
n
174
175
B
MET
1
n
1
MET
1
C
GLN
2
n
2
GLN
2
C
ILE
3
n
3
ILE
3
C
PHE
4
n
4
PHE
4
C
VAL
5
n
5
VAL
5
C
LYS
6
n
6
LYS
6
C
THR
7
n
7
THR
7
C
LEU
8
n
8
LEU
8
C
THR
9
n
9
THR
9
C
GLY
10
n
10
GLY
10
C
LYS
11
n
11
LYS
11
C
THR
12
n
12
THR
12
C
ILE
13
n
13
ILE
13
C
THR
14
n
14
THR
14
C
LEU
15
n
15
LEU
15
C
GLU
16
n
16
GLU
16
C
VAL
17
n
17
VAL
17
C
GLU
18
n
18
GLU
18
C
PRO
19
n
19
PRO
19
C
SER
20
n
20
SER
20
C
ASP
21
n
21
ASP
21
C
THR
22
n
22
THR
22
C
ILE
23
n
23
ILE
23
C
GLU
24
n
24
GLU
24
C
ASN
25
n
25
ASN
25
C
VAL
26
n
26
VAL
26
C
LYS
27
n
27
LYS
27
C
ALA
28
n
28
ALA
28
C
LYS
29
n
29
LYS
29
C
ILE
30
n
30
ILE
30
C
GLN
31
n
31
GLN
31
C
ASP
32
n
32
ASP
32
C
LYS
33
n
33
LYS
33
C
GLU
34
n
34
GLU
34
C
GLY
35
n
35
GLY
35
C
ILE
36
n
36
ILE
36
C
PRO
37
n
37
PRO
37
C
PRO
38
n
38
PRO
38
C
ASP
39
n
39
ASP
39
C
GLN
40
n
40
GLN
40
C
GLN
41
n
41
GLN
41
C
ARG
42
n
42
ARG
42
C
LEU
43
n
43
LEU
43
C
ILE
44
n
44
ILE
44
C
PHE
45
n
45
PHE
45
C
ALA
46
n
46
ALA
46
C
GLY
47
n
47
GLY
47
C
LYS
48
n
48
LYS
48
C
GLN
49
n
49
GLN
49
C
LEU
50
n
50
LEU
50
C
GLU
51
n
51
GLU
51
C
ASP
52
n
52
ASP
52
C
GLY
53
n
53
GLY
53
C
ARG
54
n
54
ARG
54
C
THR
55
n
55
THR
55
C
LEU
56
n
56
LEU
56
C
SER
57
n
57
SER
57
C
ASP
58
n
58
ASP
58
C
TYR
59
n
59
TYR
59
C
ASN
60
n
60
ASN
60
C
ILE
61
n
61
ILE
61
C
GLN
62
n
62
GLN
62
C
LYS
63
n
63
LYS
63
C
GLU
64
n
64
GLU
64
C
SER
65
n
65
SER
65
C
THR
66
n
66
THR
66
C
LEU
67
n
67
LEU
67
C
HIS
68
n
68
HIS
68
C
LEU
69
n
69
LEU
69
C
VAL
70
n
70
VAL
70
C
LEU
71
n
71
LEU
71
C
ARG
72
n
72
ARG
72
C
LEU
73
n
73
LEU
73
C
ARG
74
n
74
ARG
74
C
GLY
75
n
75
GLY
75
C
n
1
2
D
PHE
3
n
2
PHE
3
D
LEU
4
n
3
LEU
4
D
ASP
5
n
4
ASP
5
D
SER
6
n
5
SER
6
D
LEU
7
n
6
LEU
7
D
ILE
8
n
7
ILE
8
D
TRP
9
n
8
TRP
9
D
GLU
10
n
9
GLU
10
D
ARG
11
n
10
ARG
11
D
VAL
12
n
11
VAL
12
D
VAL
13
n
12
VAL
13
D
ASP
14
n
13
ASP
14
D
GLU
15
n
14
GLU
15
D
GLN
16
n
15
GLN
16
D
TYR
17
n
16
TYR
17
D
ILE
18
n
17
ILE
18
D
THR
19
n
18
THR
19
D
ASN
20
n
19
ASN
20
D
PRO
21
n
20
PRO
21
D
THR
22
n
21
THR
22
D
PHE
23
n
22
PHE
23
D
CYS
24
n
23
CYS
24
D
VAL
25
n
24
VAL
25
D
SER
26
n
25
SER
26
D
ASP
27
n
26
ASP
27
D
TYR
28
n
27
TYR
28
D
PHE
29
n
28
PHE
29
D
GLU
30
n
29
GLU
30
D
VAL
31
n
30
VAL
31
D
ILE
32
n
31
ILE
32
D
ARG
33
n
32
ARG
33
D
GLN
34
n
33
GLN
34
D
PRO
35
n
34
PRO
35
D
GLY
36
n
35
GLY
36
D
ASP
37
n
36
ASP
37
D
GLY
38
n
37
GLY
38
D
ASN
39
n
38
ASN
39
D
CYS
40
n
39
CYS
40
D
PHE
41
n
40
PHE
41
D
TYR
42
n
41
TYR
42
D
HIS
43
n
42
HIS
43
D
SER
44
n
43
SER
44
D
ILE
45
n
44
ILE
45
D
ALA
46
n
45
ALA
46
D
GLU
47
n
46
GLU
47
D
LEU
48
n
47
LEU
48
D
PHE
49
n
48
PHE
49
D
PHE
50
n
49
PHE
50
D
ASP
51
n
50
ASP
51
D
VAL
52
n
51
VAL
52
D
LYS
53
n
52
LYS
53
D
THR
54
n
53
THR
54
D
PRO
55
n
54
PRO
55
D
SER
56
n
55
SER
56
D
SER
57
n
56
SER
57
D
PHE
58
n
57
PHE
58
D
ARG
59
n
58
ARG
59
D
LYS
60
n
59
LYS
60
D
VAL
61
n
60
VAL
61
D
LYS
62
n
61
LYS
62
D
GLU
63
n
62
GLU
63
D
HIS
64
n
63
HIS
64
D
LEU
65
n
64
LEU
65
D
GLN
66
n
65
GLN
66
D
LEU
67
n
66
LEU
67
D
ALA
68
n
67
ALA
68
D
ALA
69
n
68
ALA
69
D
GLU
70
n
69
GLU
70
D
VAL
71
n
70
VAL
71
D
TYR
72
n
71
TYR
72
D
TYR
73
n
72
TYR
73
D
ASP
74
n
73
ASP
74
D
THR
75
n
74
THR
75
D
GLU
76
n
75
GLU
76
D
PRO
77
n
76
PRO
77
D
GLU
78
n
77
GLU
78
D
ALA
79
n
78
ALA
79
D
VAL
80
n
79
VAL
80
D
GLY
81
n
80
GLY
81
D
THR
82
n
81
THR
82
D
GLY
83
n
82
GLY
83
D
ILE
84
n
83
ILE
84
D
SER
85
n
84
SER
85
D
LYS
86
n
85
LYS
86
D
ASP
87
n
86
ASP
87
D
GLU
88
n
87
GLU
88
D
TYR
89
n
88
TYR
89
D
ILE
90
n
89
ILE
90
D
LYS
91
n
90
LYS
91
D
VAL
92
n
91
VAL
92
D
ALA
93
n
92
ALA
93
D
MET
94
n
93
MET
94
D
LYS
95
n
94
LYS
95
D
ASP
96
n
95
ASP
96
D
ASN
97
n
96
ASN
97
D
GLU
98
n
97
GLU
98
D
TRP
99
n
98
TRP
99
D
GLY
100
n
99
GLY
100
D
GLY
101
n
100
GLY
101
D
SER
102
n
101
SER
102
D
LEU
103
n
102
LEU
103
D
GLU
104
n
103
GLU
104
D
ALA
105
n
104
ALA
105
D
SER
106
n
105
SER
106
D
MET
107
n
106
MET
107
D
LEU
108
n
107
LEU
108
D
SER
109
n
108
SER
109
D
LYS
110
n
109
LYS
110
D
HIS
111
n
110
HIS
111
D
LEU
112
n
111
LEU
112
D
GLN
113
n
112
GLN
113
D
THR
114
n
113
THR
114
D
THR
115
n
114
THR
115
D
ILE
116
n
115
ILE
116
D
ILE
117
n
116
ILE
117
D
LEU
118
n
117
LEU
118
D
TRP
119
n
118
TRP
119
D
VAL
120
n
119
VAL
120
D
VAL
121
n
120
VAL
121
D
ASN
122
n
121
ASN
122
D
SER
123
n
122
SER
123
D
THR
124
n
123
THR
124
D
GLU
125
n
124
GLU
125
D
GLN
126
n
125
GLN
126
D
VAL
127
n
126
VAL
127
D
THR
128
n
127
THR
128
D
ALA
129
n
128
ALA
129
D
ALA
130
n
129
ALA
130
D
ILE
131
n
130
ILE
131
D
LYS
132
n
131
LYS
132
D
PHE
133
n
132
PHE
133
D
GLY
134
n
133
GLY
134
D
PRO
135
n
134
PRO
135
D
GLY
136
n
135
GLY
136
D
ARG
137
n
136
ARG
137
D
VAL
138
n
137
VAL
138
D
SER
139
n
138
SER
139
D
THR
140
n
139
THR
140
D
ALA
141
n
140
ALA
141
D
LEU
142
n
141
LEU
142
D
ASN
143
n
142
ASN
143
D
LEU
144
n
143
LEU
144
D
MET
145
n
144
MET
145
D
HIS
146
n
145
HIS
146
D
VAL
147
n
146
VAL
147
D
GLY
148
n
147
GLY
148
D
ARG
149
n
148
ARG
149
D
THR
150
n
149
THR
150
D
HIS
151
n
150
HIS
151
D
PHE
152
n
151
PHE
152
D
ASP
153
n
152
ASP
153
D
ALA
154
n
153
ALA
154
D
LEU
155
n
154
LEU
155
D
ARG
156
n
155
ARG
156
D
ILE
157
n
156
ILE
157
D
ILE
158
n
157
ILE
158
D
n
158
159
D
n
159
160
D
n
160
161
D
n
161
162
D
n
162
163
D
n
163
164
D
n
164
165
D
n
165
166
D
n
166
167
D
n
167
168
D
n
168
169
D
n
169
170
D
n
170
171
D
n
171
172
D
n
172
173
D
n
173
174
D
n
174
175
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2370
-19
10790
2330
-18
10920
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
15
A
O
LEU
15
A
N
ILE
3
A
N
ILE
3
A
N
LYS
6
A
N
LYS
6
A
O
LEU
69
A
O
LEU
69
A
O
HIS
68
A
O
HIS
68
A
N
ILE
44
A
N
ILE
44
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
A
N
GLY
75
A
N
GLY
75
B
O
GLY
100
B
O
GLY
99
B
N
GLU
10
B
N
GLU
9
B
O
ILE
18
B
O
ILE
17
B
N
TYR
17
B
N
TYR
16
B
O
LYS
132
B
O
LYS
131
B
O
VAL
127
B
O
VAL
126
B
N
PHE
23
B
N
PHE
22
B
N
GLU
10
B
N
GLU
9
B
O
ILE
18
B
O
ILE
17
B
N
TYR
17
B
N
TYR
16
B
O
LYS
132
B
O
LYS
131
B
O
ILE
131
B
O
ILE
130
B
N
LEU
118
B
N
LEU
117
B
N
TRP
119
B
N
TRP
118
B
O
LEU
144
B
O
LEU
143
B
N
MET
145
B
N
MET
144
B
O
ASP
153
B
O
ASP
152
B
O
ARG
156
B
O
ARG
155
B
N
GLU
30
B
N
GLU
29
C
O
LEU
15
C
O
LEU
15
C
N
ILE
3
C
N
ILE
3
C
N
PHE
4
C
N
PHE
4
C
O
LEU
67
C
O
LEU
67
C
O
HIS
68
C
O
HIS
68
C
N
ILE
44
C
N
ILE
44
C
N
PHE
45
C
N
PHE
45
C
O
LYS
48
C
O
LYS
48
C
N
GLY
75
C
N
GLY
75
D
O
GLY
100
D
O
GLY
99
D
N
VAL
13
D
N
VAL
12
D
O
GLN
16
D
O
GLN
15
D
N
TYR
17
D
N
TYR
16
D
O
LYS
132
D
O
LYS
131
D
O
VAL
127
D
O
VAL
126
D
N
PHE
23
D
N
PHE
22
D
N
VAL
13
D
N
VAL
12
D
O
GLN
16
D
O
GLN
15
D
N
TYR
17
D
N
TYR
16
D
O
LYS
132
D
O
LYS
131
D
O
ALA
129
D
O
ALA
128
D
N
VAL
120
D
N
VAL
119
D
N
TRP
119
D
N
TRP
118
D
O
HIS
146
D
O
HIS
145
D
N
VAL
147
D
N
VAL
146
D
O
HIS
151
D
O
HIS
150
D
O
ARG
156
D
O
ARG
155
D
N
GLU
30
D
N
GLU
29
1
B
GLU
159
B
GLU
158
1
Y
1
B
GLN
160
B
GLN
159
1
Y
1
B
LEU
161
B
LEU
160
1
Y
1
B
GLU
162
B
GLU
161
1
Y
1
B
ASN
163
B
ASN
162
1
Y
1
B
ASN
164
B
ASN
163
1
Y
1
B
GLN
165
B
GLN
164
1
Y
1
B
PRO
166
B
PRO
165
1
Y
1
B
GLN
167
B
GLN
166
1
Y
1
B
ASP
168
B
ASP
167
1
Y
1
B
ARG
169
B
ARG
168
1
Y
1
B
HIS
170
B
HIS
169
1
Y
1
B
HIS
171
B
HIS
170
1
Y
1
B
HIS
172
B
HIS
171
1
Y
1
B
HIS
173
B
HIS
172
1
Y
1
B
HIS
174
B
HIS
173
1
Y
1
B
HIS
175
B
HIS
174
1
Y
1
D
ASP
2
D
ASP
1
1
Y
1
D
GLU
159
D
GLU
158
1
Y
1
D
GLN
160
D
GLN
159
1
Y
1
D
LEU
161
D
LEU
160
1
Y
1
D
GLU
162
D
GLU
161
1
Y
1
D
ASN
163
D
ASN
162
1
Y
1
D
ASN
164
D
ASN
163
1
Y
1
D
GLN
165
D
GLN
164
1
Y
1
D
PRO
166
D
PRO
165
1
Y
1
D
GLN
167
D
GLN
166
1
Y
1
D
ASP
168
D
ASP
167
1
Y
1
D
ARG
169
D
ARG
168
1
Y
1
D
HIS
170
D
HIS
169
1
Y
1
D
HIS
171
D
HIS
170
1
Y
1
D
HIS
172
D
HIS
171
1
Y
1
D
HIS
173
D
HIS
172
1
Y
1
D
HIS
174
D
HIS
173
1
Y
1
D
HIS
175
D
HIS
174
1
Y
1
C
C
O
ND
GLY
3CN
75
101
2.00
1
A
A
O
ND
GLY
3CN
75
101
2.00
1
A
ASP
39
-56.39
-9.39
1
A
ALA
46
67.60
-0.93
1
A
LYS
63
45.63
-119.95
1
A
GLU
64
-78.99
25.04
1
B
ASP
14
34.41
60.98
1
B
ASN
97
57.04
17.58
1
B
THR
150
-151.40
2.11
1
D
ASP
14
35.18
-103.61
1
D
SER
26
-59.10
-8.21
1
D
THR
124
-93.31
35.58
1
D
ALA
129
168.36
156.03
1
D
ARG
149
58.39
8.60
53.610
20.8210
2.000
0.2500
0.0000
0.0200
-0.2300
0.0000
-0.0100
0.8930
0.8170
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY
0.2780
0.2103
0.2136
2.8500
50
567
12472
11868
4.8000
95.1600
0.2681
0.2044
1.000
0.500
0.8047
18.2550
0.3470
0.4698
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.4700
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.8500
50
46
3767
23
0
3698
0.006
0.020
3792
1.154
1.960
5125
5.675
5.000
459
36.718
24.629
175
19.125
15.000
677
14.770
15.000
20
0.080
0.200
588
0.004
0.021
2802
0.3920
0.2920
2.9060
29
621
650
621
20
75.2300
2.850
50.000
4HXD
12408
11887
0.058
0.958
1
15.400
3.300
95.800
0.141
2.850
2.900
486
0.686
1
2.900
79.000
0.133
2.900
2.950
562
0.651
1
3.100
98.100
0.127
2.950
3.010
627
0.667
1
3.200
98.100
0.116
3.010
3.070
596
0.775
1
3.300
97.900
0.104
3.070
3.140
596
0.762
1
3.200
97.500
0.097
3.140
3.210
595
0.813
1
3.200
98.000
0.090
3.210
3.290
600
0.814
1
3.200
98.000
0.080
3.290
3.380
619
1.043
1
3.200
97.300
0.091
3.380
3.480
580
1.777
1
3.200
97.500
0.074
3.480
3.590
616
1.079
1
3.200
97.000
0.076
3.590
3.720
573
1.686
1
3.200
97.000
0.065
3.720
3.870
599
1.171
1
3.300
97.100
0.074
3.870
4.040
615
2.057
1
3.300
96.900
0.052
4.040
4.260
586
1.012
1
3.300
96.900
0.046
4.260
4.520
608
0.890
1
3.400
96.200
0.042
4.520
4.870
598
0.833
1
3.400
96.000
0.038
4.870
5.360
589
0.636
1
3.400
95.300
0.036
5.360
6.140
612
0.556
1
3.400
95.500
0.034
6.140
7.730
606
0.551
1
3.300
94.700
0.035
7.730
50.000
624
0.695
1
3.200
92.600
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Mon Jun 27 09:33:44 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
Polyubiquitin-C (E.C.3.4.19.12), RNA-directed RNA polymerase L (E.C.3.4.19.12, 2.7.7.48)
Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
2
3
A
LEU
56
A
LEU
56
HELX_P
A
ASN
60
A
ASN
60
5
3
5
B
PHE
3
B
PHE
2
HELX_P
B
LEU
7
B
LEU
6
1
4
5
B
VAL
25
B
VAL
24
HELX_P
B
TYR
28
B
TYR
27
1
5
4
B
ASN
39
B
ASN
38
HELX_P
B
PHE
50
B
PHE
49
1
6
12
B
SER
57
B
SER
56
HELX_P
B
TYR
73
B
TYR
72
1
7
17
B
GLU
76
B
GLU
75
HELX_P
B
GLY
81
B
GLY
80
1
8
6
B
SER
85
B
SER
84
HELX_P
B
MET
94
B
MET
93
1
9
10
B
SER
102
B
SER
101
HELX_P
B
LEU
112
B
LEU
111
1
10
11
C
THR
22
C
THR
22
HELX_P
C
GLY
35
C
GLY
35
1
11
14
C
PRO
37
C
PRO
37
HELX_P
C
ASP
39
C
ASP
39
5
12
3
D
PHE
3
D
PHE
2
HELX_P
D
LEU
7
D
LEU
6
5
13
5
D
ASN
39
D
ASN
38
HELX_P
D
PHE
50
D
PHE
49
1
14
12
D
SER
57
D
SER
56
HELX_P
D
TYR
73
D
TYR
72
1
15
17
D
GLU
76
D
GLU
75
HELX_P
D
GLY
83
D
GLY
82
1
16
8
D
SER
85
D
SER
84
HELX_P
D
MET
94
D
MET
93
1
17
10
D
SER
102
D
SER
101
HELX_P
D
LEU
112
D
LEU
111
1
18
11
covale
1.334
A
GLY
75
A
C
GLY
75
1_555
A
3CN
101
E
ND
3CN
1_555
covale
1.345
C
GLY
75
C
C
GLY
75
1_555
C
3CN
101
G
ND
3CN
1_555
covale
1.814
B
CYS
40
B
SG
CYS
39
1_555
A
3CN
101
E
CA
3CN
1_555
covale
1.818
D
CYS
40
D
SG
CYS
39
1_555
C
3CN
101
G
CA
3CN
1_555
hydrolase/viral protein
OTU-like Cysteine protease, Dugbe virus, deubiquitinase, 3-AMINOPROPANE, ubiquitin hydrolase, viral protein, hydrolase, ubiquitin., hydrolase-viral protein complex
UBC_HUMAN
UNP
1
1
P0CG48
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
L_DUGBA
UNP
2
2
Q66431
DFLDSLIWERVVDEQYITNPTFCVSDYFEVIRQPGDGNCFYHSIAELFFDVKTPSSFRKVKEHLQLAAEVYYDTEPEAVG
TGISKDEYIKVAMKDNEWGGSLEASMLSKHLQTTIILWVVNSTEQVTAAIKFGPGRVSTALNLMHVGRTHFDALRIIEQL
ENNQPQDR
1
75
4HXD
1
75
P0CG48
A
1
1
75
2
169
4HXD
2
169
Q66431
B
2
1
168
1
75
4HXD
1
75
P0CG48
C
1
1
75
2
169
4HXD
2
169
Q66431
D
2
1
168
2
EXPRESSION TAG
HIS
170
4HXD
B
Q66431
UNP
169
2
EXPRESSION TAG
HIS
171
4HXD
B
Q66431
UNP
170
2
EXPRESSION TAG
HIS
172
4HXD
B
Q66431
UNP
171
2
EXPRESSION TAG
HIS
173
4HXD
B
Q66431
UNP
172
2
EXPRESSION TAG
HIS
174
4HXD
B
Q66431
UNP
173
2
EXPRESSION TAG
HIS
175
4HXD
B
Q66431
UNP
174
4
EXPRESSION TAG
HIS
170
4HXD
D
Q66431
UNP
169
4
EXPRESSION TAG
HIS
171
4HXD
D
Q66431
UNP
170
4
EXPRESSION TAG
HIS
172
4HXD
D
Q66431
UNP
171
4
EXPRESSION TAG
HIS
173
4HXD
D
Q66431
UNP
172
4
EXPRESSION TAG
HIS
174
4HXD
D
Q66431
UNP
173
4
EXPRESSION TAG
HIS
175
4HXD
D
Q66431
UNP
174
5
2
4
7
5
2
4
7
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
LYS
6
A
LYS
6
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
A
ARG
74
A
ARG
74
A
GLY
75
A
GLY
75
B
GLY
100
B
GLY
99
B
GLY
101
B
GLY
100
B
GLU
10
B
GLU
9
B
VAL
13
B
VAL
12
B
GLN
16
B
GLN
15
B
THR
19
B
THR
18
B
GLN
126
B
GLN
125
B
PHE
133
B
PHE
132
B
PHE
23
B
PHE
22
B
CYS
24
B
CYS
23
B
GLU
10
B
GLU
9
B
VAL
13
B
VAL
12
B
GLN
16
B
GLN
15
B
THR
19
B
THR
18
B
GLN
126
B
GLN
125
B
PHE
133
B
PHE
132
B
ILE
116
B
ILE
115
B
VAL
121
B
VAL
120
B
LEU
142
B
LEU
141
B
HIS
146
B
HIS
145
B
PHE
152
B
PHE
151
B
ILE
157
B
ILE
156
B
PHE
29
B
PHE
28
B
ILE
32
B
ILE
31
C
THR
12
C
THR
12
C
GLU
16
C
GLU
16
C
GLN
2
C
GLN
2
C
THR
7
C
THR
7
C
THR
66
C
THR
66
C
LEU
71
C
LEU
71
C
GLN
41
C
GLN
41
C
PHE
45
C
PHE
45
C
LYS
48
C
LYS
48
C
GLN
49
C
GLN
49
C
ARG
74
C
ARG
74
C
GLY
75
C
GLY
75
D
GLY
100
D
GLY
99
D
GLY
101
D
GLY
100
D
GLU
10
D
GLU
9
D
VAL
13
D
VAL
12
D
GLN
16
D
GLN
15
D
THR
19
D
THR
18
D
GLN
126
D
GLN
125
D
PHE
133
D
PHE
132
D
PHE
23
D
PHE
22
D
CYS
24
D
CYS
23
D
GLU
10
D
GLU
9
D
VAL
13
D
VAL
12
D
GLN
16
D
GLN
15
D
THR
19
D
THR
18
D
GLN
126
D
GLN
125
D
PHE
133
D
PHE
132
D
ILE
116
D
ILE
115
D
VAL
121
D
VAL
120
D
LEU
142
D
LEU
141
D
VAL
147
D
VAL
146
D
HIS
151
D
HIS
150
D
ILE
157
D
ILE
156
D
PHE
29
D
PHE
28
D
ILE
32
D
ILE
31
BINDING SITE FOR RESIDUE 3CN A 101
Software
5
BINDING SITE FOR RESIDUE SO4 A 102
Software
4
BINDING SITE FOR RESIDUE 3CN C 101
Software
6
BINDING SITE FOR RESIDUE SO4 C 102
Software
3
BINDING SITE FOR RESIDUE SO4 D 201
Software
4
A
GLY
75
A
GLY
75
5
1_555
B
GLY
38
B
GLY
37
5
1_555
B
CYS
40
B
CYS
39
5
1_555
B
TRP
99
B
TRP
98
5
1_555
B
THR
150
B
THR
149
5
1_555
A
THR
9
A
THR
9
4
1_555
A
LYS
11
A
LYS
11
4
1_555
B
LYS
91
B
LYS
90
4
1_565
B
SER
123
B
SER
122
4
2_554
C
GLY
75
C
GLY
75
6
1_555
D
GLY
38
D
GLY
37
6
1_555
D
CYS
40
D
CYS
39
6
1_555
D
TRP
99
D
TRP
98
6
1_555
D
THR
150
D
THR
149
6
1_555
D
HIS
151
D
HIS
150
6
1_555
C
ARG
74
C
ARG
74
3
1_555
D
GLU
98
D
GLU
97
3
1_555
D
TRP
99
D
TRP
98
3
2_555
C
THR
9
C
THR
9
4
1_565
C
LYS
11
C
LYS
11
4
1_565
D
LYS
91
D
LYS
90
4
1_555
D
SER
123
D
SER
122
4
2_565
5
C 1 2 1