0.018237 0.000000 0.000000 0.000000 0.017019 0.000000 0.000000 0.000000 0.015120 0.00000 0.00000 0.00000 Bensen, D.C. Trzoss, M. Tari, L.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 54.833 58.757 66.136 C19 H19 Cl N8 S 426.926 (3R)-1-[5-chloro-6-ethyl-2-(pyrido[2,3-b]pyrazin-7-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]pyrrolidin-3-amine non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H10 O 74.122 TERTIARY-BUTYL ALCOHOL 2-METHYL-2-PROPANOL non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N CL Y 2 N C Y 3 N C N 4 N C N 5 N C Y 6 N N Y 7 N C Y 8 N C N 9 N N N 10 N C N 11 R C N 12 N N N 13 N C N 14 N C Y 15 N N Y 16 N C Y 17 N N Y 18 N C N 19 N S Y 20 N C Y 21 N C Y 22 N N Y 23 N C Y 24 N N Y 25 N C Y 26 N C Y 27 N N Y 28 N C Y 29 N C N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N N N 70 N C N 71 N N N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N O N 113 N O N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N N N 123 S C N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N O N 130 N N N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C N 147 N C N 148 N C N 149 N O N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 N C N 163 N C N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C Y 176 N C Y 177 N N Y 178 N C Y 179 N C Y 180 N N N 181 N O N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N O N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 S C N 200 N C N 201 N C N 202 N C N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N C N 247 N N N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N S N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N O N 339 N C N 340 N C N 341 N C N 342 N C N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 R C N 358 N O N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N N Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N N N 422 S C N 423 N C N 424 N O N 425 N C N 426 N C N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H Y 1 N doub Y 2 N sing Y 3 N sing Y 4 N doub Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N sing Y 9 N doub Y 10 N doub Y 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing Y 19 N doub Y 20 N sing Y 21 N sing N 22 N sing N 23 N sing Y 24 N doub Y 25 N doub Y 26 N sing Y 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing Y 289 N sing N 290 N sing Y 291 N doub N 292 N sing Y 293 N doub N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing Y 370 N doub Y 371 N sing Y 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N sing Y 379 N doub N 380 N sing Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N doub N 403 N sing Y 404 N doub N 405 N sing Y 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 23 1529 1536 10.1016/j.bmcl.2012.11.032 23352267 Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. 2013 10.2210/pdb4hxw/pdb pdb_00004hxw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-04-25 NOIR-1 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 4.2.2 ALS 1.0 SYNCHROTRON ALS BEAMLINE 4.2.2 23835.613 DNA gyrase subunit B 5.99.1.3 1 man polymer 426.926 (3R)-1-[5-chloro-6-ethyl-2-(pyrido[2,3-b]pyrazin-7-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]pyrrolidin-3-amine 1 syn non-polymer 74.122 TERTIARY-BUTYL ALCOHOL 1 syn non-polymer 18.015 water 258 nat water no no GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGLEHHHHHH GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 700802 / V583 sample EF_0005, gyrB 226185 Enterococcus faecalis 469008 Escherichia coli BL21(DE3) 1 2.23 44.96 VAPOR DIFFUSION, HANGING DROP 5.6 25% (W/V) PEG 1500, 3% (V/V) T-BUTANOL, 20% (W/V) GLYCEROL, 20 MM CITRATE, pH 5.6 , VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-02-13 1 1 2013-02-27 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-11-12 REL REL 1A0 (3R)-1-[5-chloro-6-ethyl-2-(pyrido[2,3-b]pyrazin-7-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]pyrrolidin-3-amine TBU TERTIARY-BUTYL ALCOHOL HOH water 1A0 1 2 1A0 1A0 301 A TBU 1 3 TBU TBU 302 A HOH 1 4 HOH HOH 401 A HOH 2 4 HOH HOH 402 A HOH 3 4 HOH HOH 403 A HOH 4 4 HOH HOH 404 A HOH 5 4 HOH HOH 405 A HOH 6 4 HOH HOH 406 A HOH 7 4 HOH HOH 407 A HOH 8 4 HOH HOH 408 A HOH 9 4 HOH HOH 409 A HOH 10 4 HOH HOH 410 A HOH 11 4 HOH HOH 411 A HOH 12 4 HOH HOH 412 A HOH 13 4 HOH HOH 413 A HOH 14 4 HOH HOH 414 A HOH 15 4 HOH HOH 415 A HOH 16 4 HOH HOH 416 A HOH 17 4 HOH HOH 417 A HOH 18 4 HOH HOH 418 A HOH 19 4 HOH HOH 419 A HOH 20 4 HOH HOH 420 A HOH 21 4 HOH HOH 421 A HOH 22 4 HOH HOH 422 A HOH 23 4 HOH HOH 423 A HOH 24 4 HOH HOH 424 A HOH 25 4 HOH HOH 425 A HOH 26 4 HOH HOH 426 A HOH 27 4 HOH HOH 427 A HOH 28 4 HOH HOH 428 A HOH 29 4 HOH HOH 429 A HOH 30 4 HOH HOH 430 A HOH 31 4 HOH HOH 431 A HOH 32 4 HOH HOH 432 A HOH 33 4 HOH HOH 433 A HOH 34 4 HOH HOH 434 A HOH 35 4 HOH HOH 435 A HOH 36 4 HOH HOH 436 A HOH 37 4 HOH HOH 437 A HOH 38 4 HOH HOH 438 A HOH 39 4 HOH HOH 439 A HOH 40 4 HOH HOH 440 A HOH 41 4 HOH HOH 441 A HOH 42 4 HOH HOH 442 A HOH 43 4 HOH HOH 443 A HOH 44 4 HOH HOH 444 A HOH 45 4 HOH HOH 445 A HOH 46 4 HOH HOH 446 A HOH 47 4 HOH HOH 447 A HOH 48 4 HOH HOH 448 A HOH 49 4 HOH HOH 449 A HOH 50 4 HOH HOH 450 A HOH 51 4 HOH HOH 451 A HOH 52 4 HOH HOH 452 A HOH 53 4 HOH HOH 453 A HOH 54 4 HOH HOH 454 A HOH 55 4 HOH HOH 455 A HOH 56 4 HOH HOH 456 A HOH 57 4 HOH HOH 457 A HOH 58 4 HOH HOH 458 A HOH 59 4 HOH HOH 459 A HOH 60 4 HOH HOH 460 A HOH 61 4 HOH HOH 461 A HOH 62 4 HOH HOH 462 A HOH 63 4 HOH HOH 463 A HOH 64 4 HOH HOH 464 A HOH 65 4 HOH HOH 465 A HOH 66 4 HOH HOH 466 A HOH 67 4 HOH HOH 467 A HOH 68 4 HOH HOH 468 A HOH 69 4 HOH HOH 469 A HOH 70 4 HOH HOH 470 A HOH 71 4 HOH HOH 471 A HOH 72 4 HOH HOH 472 A HOH 73 4 HOH HOH 473 A HOH 74 4 HOH HOH 474 A HOH 75 4 HOH HOH 475 A HOH 76 4 HOH HOH 476 A HOH 77 4 HOH HOH 477 A HOH 78 4 HOH HOH 478 A HOH 79 4 HOH HOH 479 A HOH 80 4 HOH HOH 480 A HOH 81 4 HOH HOH 481 A HOH 82 4 HOH HOH 482 A HOH 83 4 HOH HOH 483 A HOH 84 4 HOH HOH 484 A HOH 85 4 HOH HOH 485 A HOH 86 4 HOH HOH 486 A HOH 87 4 HOH HOH 487 A HOH 88 4 HOH HOH 488 A HOH 89 4 HOH HOH 489 A HOH 90 4 HOH HOH 490 A HOH 91 4 HOH HOH 491 A HOH 92 4 HOH HOH 492 A HOH 93 4 HOH HOH 493 A HOH 94 4 HOH HOH 494 A HOH 95 4 HOH HOH 495 A HOH 96 4 HOH HOH 496 A HOH 97 4 HOH HOH 497 A HOH 98 4 HOH HOH 498 A HOH 99 4 HOH HOH 499 A HOH 100 4 HOH HOH 500 A HOH 101 4 HOH HOH 501 A HOH 102 4 HOH HOH 502 A HOH 103 4 HOH HOH 503 A HOH 104 4 HOH HOH 504 A HOH 105 4 HOH HOH 505 A HOH 106 4 HOH HOH 506 A HOH 107 4 HOH HOH 507 A HOH 108 4 HOH HOH 508 A HOH 109 4 HOH HOH 509 A HOH 110 4 HOH HOH 510 A HOH 111 4 HOH HOH 511 A HOH 112 4 HOH HOH 512 A HOH 113 4 HOH HOH 513 A HOH 114 4 HOH HOH 514 A HOH 115 4 HOH HOH 515 A HOH 116 4 HOH HOH 516 A HOH 117 4 HOH HOH 517 A HOH 118 4 HOH HOH 518 A HOH 119 4 HOH HOH 519 A HOH 120 4 HOH HOH 520 A HOH 121 4 HOH HOH 521 A HOH 122 4 HOH HOH 522 A HOH 123 4 HOH HOH 523 A HOH 124 4 HOH HOH 524 A HOH 125 4 HOH HOH 525 A HOH 126 4 HOH HOH 526 A HOH 127 4 HOH HOH 527 A HOH 128 4 HOH HOH 528 A HOH 129 4 HOH HOH 529 A HOH 130 4 HOH HOH 530 A HOH 131 4 HOH HOH 531 A HOH 132 4 HOH HOH 532 A HOH 133 4 HOH HOH 533 A HOH 134 4 HOH HOH 534 A HOH 135 4 HOH HOH 535 A HOH 136 4 HOH HOH 536 A HOH 137 4 HOH HOH 537 A HOH 138 4 HOH HOH 538 A HOH 139 4 HOH HOH 539 A HOH 140 4 HOH HOH 540 A HOH 141 4 HOH HOH 541 A HOH 142 4 HOH HOH 542 A HOH 143 4 HOH HOH 543 A HOH 144 4 HOH HOH 544 A HOH 145 4 HOH HOH 545 A HOH 146 4 HOH HOH 546 A HOH 147 4 HOH HOH 547 A HOH 148 4 HOH HOH 548 A HOH 149 4 HOH HOH 549 A HOH 150 4 HOH HOH 550 A HOH 151 4 HOH HOH 551 A HOH 152 4 HOH HOH 552 A HOH 153 4 HOH HOH 553 A HOH 154 4 HOH HOH 554 A HOH 155 4 HOH HOH 555 A HOH 156 4 HOH HOH 556 A HOH 157 4 HOH HOH 557 A HOH 158 4 HOH HOH 558 A HOH 159 4 HOH HOH 559 A HOH 160 4 HOH HOH 560 A HOH 161 4 HOH HOH 561 A HOH 162 4 HOH HOH 562 A HOH 163 4 HOH HOH 563 A HOH 164 4 HOH HOH 564 A HOH 165 4 HOH HOH 565 A HOH 166 4 HOH HOH 566 A HOH 167 4 HOH HOH 567 A HOH 168 4 HOH HOH 568 A HOH 169 4 HOH HOH 569 A HOH 170 4 HOH HOH 570 A HOH 171 4 HOH HOH 571 A HOH 172 4 HOH HOH 572 A HOH 173 4 HOH HOH 573 A HOH 174 4 HOH HOH 574 A HOH 175 4 HOH HOH 575 A HOH 176 4 HOH HOH 576 A HOH 177 4 HOH HOH 577 A HOH 178 4 HOH HOH 578 A HOH 179 4 HOH HOH 579 A HOH 180 4 HOH HOH 580 A HOH 181 4 HOH HOH 581 A HOH 182 4 HOH HOH 582 A HOH 183 4 HOH HOH 583 A HOH 184 4 HOH HOH 584 A HOH 185 4 HOH HOH 585 A HOH 186 4 HOH HOH 586 A HOH 187 4 HOH HOH 587 A HOH 188 4 HOH HOH 588 A HOH 189 4 HOH HOH 589 A HOH 190 4 HOH HOH 590 A HOH 191 4 HOH HOH 591 A HOH 192 4 HOH HOH 592 A HOH 193 4 HOH HOH 593 A HOH 194 4 HOH HOH 594 A HOH 195 4 HOH HOH 595 A HOH 196 4 HOH HOH 596 A HOH 197 4 HOH HOH 597 A HOH 198 4 HOH HOH 598 A HOH 199 4 HOH HOH 599 A HOH 200 4 HOH HOH 600 A HOH 201 4 HOH HOH 601 A HOH 202 4 HOH HOH 602 A HOH 203 4 HOH HOH 603 A HOH 204 4 HOH HOH 604 A HOH 205 4 HOH HOH 605 A HOH 206 4 HOH HOH 606 A HOH 207 4 HOH HOH 607 A HOH 208 4 HOH HOH 608 A HOH 209 4 HOH HOH 609 A HOH 210 4 HOH HOH 610 A HOH 211 4 HOH HOH 611 A HOH 212 4 HOH HOH 612 A HOH 213 4 HOH HOH 613 A HOH 214 4 HOH HOH 614 A HOH 215 4 HOH HOH 615 A HOH 216 4 HOH HOH 616 A HOH 217 4 HOH HOH 617 A HOH 218 4 HOH HOH 618 A HOH 219 4 HOH HOH 619 A HOH 220 4 HOH HOH 620 A HOH 221 4 HOH HOH 621 A HOH 222 4 HOH HOH 622 A HOH 223 4 HOH HOH 623 A HOH 224 4 HOH HOH 624 A HOH 225 4 HOH HOH 625 A HOH 226 4 HOH HOH 626 A HOH 227 4 HOH HOH 627 A HOH 228 4 HOH HOH 628 A HOH 229 4 HOH HOH 629 A HOH 230 4 HOH HOH 630 A HOH 231 4 HOH HOH 631 A HOH 232 4 HOH HOH 632 A HOH 233 4 HOH HOH 633 A HOH 234 4 HOH HOH 634 A HOH 235 4 HOH HOH 635 A HOH 236 4 HOH HOH 636 A HOH 237 4 HOH HOH 637 A HOH 238 4 HOH HOH 638 A HOH 239 4 HOH HOH 639 A HOH 240 4 HOH HOH 640 A HOH 241 4 HOH HOH 641 A HOH 242 4 HOH HOH 642 A HOH 243 4 HOH HOH 643 A HOH 244 4 HOH HOH 644 A HOH 245 4 HOH HOH 645 A HOH 246 4 HOH HOH 646 A HOH 247 4 HOH HOH 647 A HOH 248 4 HOH HOH 648 A HOH 249 4 HOH HOH 649 A HOH 250 4 HOH HOH 650 A HOH 251 4 HOH HOH 651 A HOH 252 4 HOH HOH 652 A HOH 253 4 HOH HOH 653 A HOH 254 4 HOH HOH 654 A HOH 255 4 HOH HOH 655 A HOH 256 4 HOH HOH 656 A HOH 257 4 HOH HOH 657 A HOH 258 4 HOH HOH 658 A GLY 25 n 1 GLY 25 A LEU 26 n 2 LEU 26 A GLU 27 n 3 GLU 27 A ALA 28 n 4 ALA 28 A VAL 29 n 5 VAL 29 A ARG 30 n 6 ARG 30 A LYS 31 n 7 LYS 31 A ARG 32 n 8 ARG 32 A PRO 33 n 9 PRO 33 A GLY 34 n 10 GLY 34 A MET 35 n 11 MET 35 A TYR 36 n 12 TYR 36 A ILE 37 n 13 ILE 37 A GLY 38 n 14 GLY 38 A SER 39 n 15 SER 39 A THR 40 n 16 THR 40 A SER 41 n 17 SER 41 A GLY 42 n 18 GLY 42 A GLU 43 n 19 GLU 43 A GLY 44 n 20 GLY 44 A LEU 45 n 21 LEU 45 A HIS 46 n 22 HIS 46 A HIS 47 n 23 HIS 47 A LEU 48 n 24 LEU 48 A VAL 49 n 25 VAL 49 A TRP 50 n 26 TRP 50 A GLU 51 n 27 GLU 51 A ILE 52 n 28 ILE 52 A VAL 53 n 29 VAL 53 A ASP 54 n 30 ASP 54 A ASN 55 n 31 ASN 55 A SER 56 n 32 SER 56 A ILE 57 n 33 ILE 57 A ASP 58 n 34 ASP 58 A GLU 59 n 35 GLU 59 A ALA 60 n 36 ALA 60 A LEU 61 n 37 LEU 61 A ALA 62 n 38 ALA 62 A GLY 63 n 39 GLY 63 A PHE 64 n 40 PHE 64 A ALA 65 n 41 ALA 65 A LYS 66 n 42 LYS 66 A SER 67 n 43 SER 67 A ILE 68 n 44 ILE 68 A GLN 69 n 45 GLN 69 A VAL 70 n 46 VAL 70 A ILE 71 n 47 ILE 71 A ILE 72 n 48 ILE 72 A GLU 73 n 49 GLU 73 A PRO 74 n 50 PRO 74 A ASP 75 n 51 ASP 75 A ASP 76 n 52 ASP 76 A SER 77 n 53 SER 77 A ILE 78 n 54 ILE 78 A THR 79 n 55 THR 79 A VAL 80 n 56 VAL 80 A ILE 81 n 57 ILE 81 A ASP 82 n 58 ASP 82 A ASP 83 n 59 ASP 83 A GLY 84 n 60 GLY 84 A ARG 85 n 61 ARG 85 A GLY 86 n 62 GLY 86 A ILE 87 n 63 ILE 87 A PRO 88 n 64 PRO 88 A VAL 89 n 65 VAL 89 A GLY 90 n 66 GLY 90 A ILE 91 n 67 ILE 91 A GLN 92 n 68 GLN 92 A ALA 93 n 69 ALA 93 A LYS 94 n 70 LYS 94 A THR 95 n 71 THR 95 A GLY 96 n 72 GLY 96 A ARG 97 n 73 ARG 97 A PRO 98 n 74 PRO 98 A ALA 99 n 75 ALA 99 A VAL 100 n 76 VAL 100 A GLU 101 n 77 GLU 101 A THR 102 n 78 THR 102 A VAL 103 n 79 VAL 103 A PHE 104 n 80 PHE 104 A THR 105 n 81 THR 105 A VAL 106 n 82 VAL 106 A LEU 107 n 83 LEU 107 A n 84 108 A n 85 109 A n 86 110 A n 87 111 A n 88 112 A n 89 113 A n 90 114 A n 91 115 A n 92 116 A n 93 117 A n 94 118 A n 95 119 A n 96 120 A n 97 121 A n 98 122 A n 99 123 A n 100 124 A n 101 125 A n 102 126 A VAL 127 n 103 VAL 127 A GLY 128 n 104 GLY 128 A SER 129 n 105 SER 129 A SER 130 n 106 SER 130 A VAL 131 n 107 VAL 131 A VAL 132 n 108 VAL 132 A ASN 133 n 109 ASN 133 A ALA 134 n 110 ALA 134 A LEU 135 n 111 LEU 135 A SER 136 n 112 SER 136 A THR 137 n 113 THR 137 A SER 138 n 114 SER 138 A LEU 139 n 115 LEU 139 A ASP 140 n 116 ASP 140 A VAL 141 n 117 VAL 141 A ARG 142 n 118 ARG 142 A VAL 143 n 119 VAL 143 A TYR 144 n 120 TYR 144 A LYS 145 n 121 LYS 145 A ASP 146 n 122 ASP 146 A GLY 147 n 123 GLY 147 A LYS 148 n 124 LYS 148 A VAL 149 n 125 VAL 149 A TYR 150 n 126 TYR 150 A TYR 151 n 127 TYR 151 A GLN 152 n 128 GLN 152 A GLU 153 n 129 GLU 153 A TYR 154 n 130 TYR 154 A ARG 155 n 131 ARG 155 A ARG 156 n 132 ARG 156 A GLY 157 n 133 GLY 157 A ALA 158 n 134 ALA 158 A VAL 159 n 135 VAL 159 A VAL 160 n 136 VAL 160 A ASP 161 n 137 ASP 161 A ASP 162 n 138 ASP 162 A LEU 163 n 139 LEU 163 A LYS 164 n 140 LYS 164 A VAL 165 n 141 VAL 165 A ILE 166 n 142 ILE 166 A GLU 167 n 143 GLU 167 A GLU 168 n 144 GLU 168 A THR 169 n 145 THR 169 A ASP 170 n 146 ASP 170 A ARG 171 n 147 ARG 171 A HIS 172 n 148 HIS 172 A GLY 173 n 149 GLY 173 A THR 174 n 150 THR 174 A THR 175 n 151 THR 175 A VAL 176 n 152 VAL 176 A HIS 177 n 153 HIS 177 A PHE 178 n 154 PHE 178 A ILE 179 n 155 ILE 179 A PRO 180 n 156 PRO 180 A ASP 181 n 157 ASP 181 A PRO 182 n 158 PRO 182 A GLU 183 n 159 GLU 183 A ILE 184 n 160 ILE 184 A PHE 185 n 161 PHE 185 A THR 186 n 162 THR 186 A GLU 187 n 163 GLU 187 A THR 188 n 164 THR 188 A THR 189 n 165 THR 189 A VAL 190 n 166 VAL 190 A TYR 191 n 167 TYR 191 A ASP 192 n 168 ASP 192 A PHE 193 n 169 PHE 193 A ASP 194 n 170 ASP 194 A LYS 195 n 171 LYS 195 A LEU 196 n 172 LEU 196 A ALA 197 n 173 ALA 197 A THR 198 n 174 THR 198 A ARG 199 n 175 ARG 199 A VAL 200 n 176 VAL 200 A ARG 201 n 177 ARG 201 A GLU 202 n 178 GLU 202 A LEU 203 n 179 LEU 203 A ALA 204 n 180 ALA 204 A PHE 205 n 181 PHE 205 A LEU 206 n 182 LEU 206 A ASN 207 n 183 ASN 207 A ARG 208 n 184 ARG 208 A GLY 209 n 185 GLY 209 A LEU 210 n 186 LEU 210 A HIS 211 n 187 HIS 211 A ILE 212 n 188 ILE 212 A SER 213 n 189 SER 213 A ILE 214 n 190 ILE 214 A GLU 215 n 191 GLU 215 A ASP 216 n 192 ASP 216 A ARG 217 n 193 ARG 217 A ARG 218 n 194 ARG 218 A GLU 219 n 195 GLU 219 A GLY 220 n 196 GLY 220 A GLN 221 n 197 GLN 221 A GLU 222 n 198 GLU 222 A ASP 223 n 199 ASP 223 A LYS 224 n 200 LYS 224 A LYS 225 n 201 LYS 225 A GLU 226 n 202 GLU 226 A TYR 227 n 203 TYR 227 A HIS 228 n 204 HIS 228 A TYR 229 n 205 TYR 229 A GLU 230 n 206 GLU 230 A GLY 231 n 207 GLY 231 A LEU 232 n 208 LEU 232 A GLU 233 n 209 GLU 233 A HIS 234 n 210 HIS 234 A n 211 235 A n 212 236 A n 213 237 A n 214 238 A n 215 239 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 158 A O ALA 134 A N ARG 155 A N ARG 131 A N TYR 151 A N TYR 127 A O LYS 164 A O LYS 140 A O ALA 158 A O ALA 134 A N ARG 155 A N ARG 131 A O GLN 152 A O GLN 128 A N VAL 141 A N VAL 117 A N TYR 144 A N TYR 120 A O GLY 173 A O GLY 149 A O VAL 176 A O VAL 152 A N VAL 80 A N VAL 56 A O THR 79 A O THR 55 A N ILE 71 A N ILE 47 A N ILE 72 A N ILE 48 A O GLU 215 A O GLU 191 A N ASP 216 A N ASP 192 A O ASP 223 A O ASP 199 1 A O GLY 38 A O GLY 14 0 Y 1 A O GLY 84 A O GLY 60 0 Y 1 A CA GLY 90 A CA GLY 66 0 Y 1 A CD LYS 94 A CD LYS 70 0 Y 1 A CE LYS 94 A CE LYS 70 0 Y 1 A NZ LYS 94 A NZ LYS 70 0 Y 1 A HIS 108 A HIS 84 1 Y 1 A ALA 109 A ALA 85 1 Y 1 A GLY 110 A GLY 86 1 Y 1 A GLY 111 A GLY 87 1 Y 1 A LYS 112 A LYS 88 1 Y 1 A PHE 113 A PHE 89 1 Y 1 A GLY 114 A GLY 90 1 Y 1 A GLY 115 A GLY 91 1 Y 1 A GLY 116 A GLY 92 1 Y 1 A GLY 117 A GLY 93 1 Y 1 A TYR 118 A TYR 94 1 Y 1 A LYS 119 A LYS 95 1 Y 1 A VAL 120 A VAL 96 1 Y 1 A SER 121 A SER 97 1 Y 1 A GLY 122 A GLY 98 1 Y 1 A GLY 123 A GLY 99 1 Y 1 A LEU 124 A LEU 100 1 Y 1 A HIS 125 A HIS 101 1 Y 1 A GLY 126 A GLY 102 1 Y 1 A HIS 235 A HIS 211 1 Y 1 A HIS 236 A HIS 212 1 Y 1 A HIS 237 A HIS 213 1 Y 1 A HIS 238 A HIS 214 1 Y 1 A HIS 239 A HIS 215 1 Y 1 A ASN 207 -113.73 52.09 1 A GLN 221 -152.16 21.78 1 A HIS 228 -163.52 114.11 22.224 -0.16 0.00 0.00 0.01 0.00 0.16 0.958 0.945 0.20042 0.16995 0.17150 1.69 23.26 1221 92704 22629 5.1 96.88 1.702 0.058 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.101 0.098 0.80 0.80 1.20 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.69 23.26 258 1802 34 0 1510 0.007 0.020 1581 1.290 1.983 2148 5.191 5.000 193 32.624 23.684 76 10.558 15.000 264 11.900 15.000 13 0.076 0.200 242 0.008 0.021 1195 0.300 0.264 1.733 72 1223 20 76.85 1.68 23.26 4HXW 92704 23887 0 0 0.046 1 95.9 0.231 1.68 1.77 1 95.9 refinement REFMAC 5.6.0117 data reduction d*TREK data scaling SCALA Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. 1 N N 2 N N 3 N N 4 N N A GLY 25 A GLY 1 HELX_P A ARG 32 A ARG 8 1 1 8 A PRO 33 A PRO 9 HELX_P A GLY 38 A GLY 14 1 2 6 A SER 41 A SER 17 HELX_P A ALA 62 A ALA 38 1 3 22 A PRO 98 A PRO 74 HELX_P A VAL 106 A VAL 82 1 4 9 A GLY 128 A GLY 104 HELX_P A LEU 135 A LEU 111 1 5 8 A ASP 192 A ASP 168 HELX_P A ASN 207 A ASN 183 1 6 16 Isomerase/Isomerase inhibitor ATP-binding, Nucleotide-binding, Topoisomerase, ATP-binding domain, Isomerase-Isomerase inhibitor complex Q839Z1_ENTFA UNP 1 18 Q839Z1 GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEG 18 224 4HXW 25 231 Q839Z1 A 1 1 207 1 expression tag LEU 232 4HXW A Q839Z1 UNP 208 1 expression tag GLU 233 4HXW A Q839Z1 UNP 209 1 expression tag HIS 234 4HXW A Q839Z1 UNP 210 1 expression tag HIS 235 4HXW A Q839Z1 UNP 211 1 expression tag HIS 236 4HXW A Q839Z1 UNP 212 1 expression tag HIS 237 4HXW A Q839Z1 UNP 213 1 expression tag HIS 238 4HXW A Q839Z1 UNP 214 1 expression tag HIS 239 4HXW A Q839Z1 UNP 215 3 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ALA 158 A ALA 134 A VAL 159 A VAL 135 A LYS 148 A LYS 124 A ARG 155 A ARG 131 A LYS 164 A LYS 140 A GLU 168 A GLU 144 A ALA 158 A ALA 134 A VAL 159 A VAL 135 A LYS 148 A LYS 124 A ARG 155 A ARG 131 A SER 136 A SER 112 A LYS 145 A LYS 121 A GLY 173 A GLY 149 A PRO 180 A PRO 156 A ILE 78 A ILE 54 A ASP 82 A ASP 58 A SER 67 A SER 43 A ILE 72 A ILE 48 A HIS 211 A HIS 187 A ASP 216 A ASP 192 A ASP 223 A ASP 199 A HIS 228 A HIS 204 BINDING SITE FOR RESIDUE 1A0 A 301 A 1A0 301 Software 12 BINDING SITE FOR RESIDUE TBU A 302 A TBU 302 Software 7 A ASN 55 A ASN 31 12 1_555 A SER 56 A SER 32 12 1_555 A GLU 59 A GLU 35 12 1_555 A ASP 82 A ASP 58 12 1_555 A ARG 85 A ARG 61 12 1_555 A GLY 86 A GLY 62 12 1_555 A ILE 87 A ILE 63 12 1_555 A PRO 88 A PRO 64 12 1_555 A SER 129 A SER 105 12 1_555 A THR 174 A THR 150 12 1_555 A HOH 414 D HOH 12 1_555 A HOH 484 D HOH 12 1_555 A ALA 60 A ALA 36 7 1_555 A THR 137 A THR 113 7 2_454 A ARG 155 A ARG 131 7 2_454 A ARG 156 A ARG 132 7 2_454 A ASN 207 A ASN 183 7 1_555 A ARG 208 A ARG 184 7 1_555 A HOH 586 D HOH 7 1_555 19 P 21 21 21