0.008154
0.000000
0.000000
0.000000
0.008154
0.000000
0.000000
0.000000
0.014301
0.00000
0.00000
0.00000
Pata, J.D.
Wilson, R.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
122.642
122.642
69.923
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
20
31
10.1016/j.str.2012.11.005
23245850
Y-family polymerase conformation is a major determinant of fidelity and translesion specificity.
2013
10.2210/pdb4hyk/pdb
pdb_00004hyk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
OSMICS confocal optics
IMAGE PLATE
2005-08-29
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
40045.836
DNA polymerase IV
2.7.7.7
1
man
polymer
Primer DNA
3135.055
DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*G)-3')
1
syn
polymer
Template DNA
5051.249
DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*CP*CP*GP*GP*CP*TP*TP*CP*CP*C)-3')
1
syn
polymer
Pol IV
no
no
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
A
polypeptide(L)
no
no
(DG)(DG)(DG)(DA)(DA)(DG)(DC)(DC)(DG)(DG)
GGGAAGCCGG
P
polydeoxyribonucleotide
no
no
(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DC)(DC)(DG)(DG)(DC)(DT)(DT)(DC)(DC)(DC)
TTCCGCCCCGGCTTCCC
T
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770
sample
dbh, Saci_0554
330779
Sulfolobus acidocaldarius
562
Escherichia coli
BLR(DE3)pLysS
pKKT7-H
1
2.73
54.87
VAPOR DIFFUSION, HANGING DROP
7
18% PEG-3350, 100 mM HEPES pH 7.55, 100mM Ca(OAc)2, 2.5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
-4.251
1
19
P
1
T
17
-8.984
P_DG1:DC17_T
1
-8.028
-0.395
0.079
-0.462
18.308
1
19
P
2
T
16
6.238
P_DG2:DC16_T
2
-1.370
0.427
1.174
0.047
6.058
1
19
P
3
T
15
-0.355
P_DG3:DC15_T
3
-17.893
0.153
0.010
-0.040
-7.824
P
4
T
14
3.744
P_DA4:DT14_T
4
-17.162
0.443
-0.319
0.282
4.939
1
20
P
5
T
13
-1.112
P_DA5:DT13_T
5
-13.066
-0.592
-0.064
-0.056
7.273
1
19
P
6
T
12
-0.355
P_DG6:DC12_T
6
-12.946
0.631
0.137
0.128
0.129
1
19
P
7
T
11
-4.626
P_DC7:DG11_T
7
-15.756
0.020
-0.334
0.029
-8.133
1
19
P
8
T
10
1.981
P_DC8:DG10_T
8
-5.026
0.299
0.152
-0.315
2.556
37.183
P
P
1
2
-4.848
T
T
17
16
2.721
-3.084
1.611
-0.073
PP_DG1DG2:DC16DC17_TT
1
-3.584
5.634
36.892
0.217
-2.912
3.365
36.530
P
P
2
3
12.873
T
T
16
15
3.521
7.999
-1.438
0.261
PP_DG2DG3:DC15DC16_TT
2
3.131
-5.039
35.540
-0.764
2.757
3.317
39.843
P
P
3
4
4.012
T
T
15
14
3.354
2.731
-0.121
-0.355
PP_DG3DA4:DT14DC15_TT
3
1.419
-2.085
39.729
-0.843
0.345
2.612
30.476
P
P
4
5
11.893
T
T
14
13
2.654
6.202
-0.614
-0.155
PP_DA4DA5:DT13DT14_TT
4
-2.646
5.073
29.738
-1.303
0.737
3.349
38.562
P
P
5
6
4.961
T
T
13
12
3.382
3.257
-0.217
-0.130
PP_DA5DG6:DC12DT13_TT
5
-6.678
10.171
37.866
-0.615
-0.529
3.345
33.700
P
P
6
7
1.316
T
T
12
11
3.360
0.763
-0.147
-0.153
PP_DG6DC7:DG11DC12_TT
6
1.623
-2.801
33.654
-0.391
0.524
3.188
42.700
P
P
7
8
22.030
T
T
11
10
3.461
15.678
-0.485
-0.222
PP_DC7DC8:DG10DG11_TT
7
-3.649
5.127
39.681
-1.969
0.279
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Data collection
Database references
1
0
2013-01-02
1
1
2013-02-13
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Dbh-Dpo4-Dpo4 #1
Dbh-Dpo4-Dpo4 #2
Dbh-Dpo4-Dbh
Dpo4-Dpo4-Dbh
Dbh-Dbh-Dpo4
RCSB
Y
RCSB
2012-11-13
REL
REL
Chemically synthesized
32630
synthetic construct
sample
Chemically synthesized
32630
synthetic construct
sample
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
ILE
4
n
4
ILE
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
TYR
10
n
10
TYR
10
A
PHE
11
n
11
PHE
11
A
PHE
12
n
12
PHE
12
A
ALA
13
n
13
ALA
13
A
GLN
14
n
14
GLN
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
GLU
17
n
17
GLU
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
ASN
20
n
20
ASN
20
A
PRO
21
n
21
PRO
21
A
GLN
22
n
22
GLN
22
A
TYR
23
n
23
TYR
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
PRO
27
n
27
PRO
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
CYS
31
n
31
CYS
31
A
VAL
32
n
32
VAL
32
A
TYR
33
n
33
TYR
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
ASN
47
n
47
ASN
47
A
TYR
48
n
48
TYR
48
A
GLU
49
n
49
GLU
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
MET
59
n
59
MET
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
ILE
62
n
62
ILE
62
A
LYS
63
n
63
LYS
63
A
ALA
64
n
64
ALA
64
A
MET
65
n
65
MET
65
A
GLN
66
n
66
GLN
66
A
ILE
67
n
67
ILE
67
A
ALA
68
n
68
ALA
68
A
PRO
69
n
69
PRO
69
A
SER
70
n
70
SER
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
TYR
73
n
73
TYR
73
A
VAL
74
n
74
VAL
74
A
PRO
75
n
75
PRO
75
A
MET
76
n
76
MET
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
PRO
79
n
79
PRO
79
A
ILE
80
n
80
ILE
80
A
TYR
81
n
81
TYR
81
A
GLU
82
n
82
GLU
82
A
ALA
83
n
83
ALA
83
A
PHE
84
n
84
PHE
84
A
SER
85
n
85
SER
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ILE
88
n
88
ILE
88
A
MET
89
n
89
MET
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
LEU
92
n
92
LEU
92
A
ASN
93
n
93
ASN
93
A
LYS
94
n
94
LYS
94
A
HIS
95
n
95
HIS
95
A
ALA
96
n
96
ALA
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
GLU
100
n
100
GLU
100
A
VAL
101
n
101
VAL
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
ALA
107
n
107
ALA
107
A
TYR
108
n
108
TYR
108
A
LEU
109
n
109
LEU
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
THR
112
n
112
THR
112
A
ASN
113
n
113
ASN
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
GLU
116
n
116
GLU
116
A
GLY
117
n
117
GLY
117
A
ASN
118
n
118
ASN
118
A
PHE
119
n
119
PHE
119
A
GLU
120
n
120
GLU
120
A
ASN
121
n
121
ASN
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
GLU
124
n
124
GLU
124
A
LEU
125
n
125
LEU
125
A
ALA
126
n
126
ALA
126
A
ARG
127
n
127
ARG
127
A
LYS
128
n
128
LYS
128
A
ILE
129
n
129
ILE
129
A
LYS
130
n
130
LYS
130
A
GLN
131
n
131
GLN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LEU
134
n
134
LEU
134
A
GLU
135
n
135
GLU
135
A
LYS
136
n
136
LYS
136
A
GLU
137
n
137
GLU
137
A
LYS
138
n
138
LYS
138
A
ILE
139
n
139
ILE
139
A
THR
140
n
140
THR
140
A
VAL
141
n
141
VAL
141
A
THR
142
n
142
THR
142
A
VAL
143
n
143
VAL
143
A
GLY
144
n
144
GLY
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
PRO
147
n
147
PRO
147
A
ASN
148
n
148
ASN
148
A
LYS
149
n
149
LYS
149
A
ILE
150
n
150
ILE
150
A
LEU
151
n
151
LEU
151
A
ALA
152
n
152
ALA
152
A
LYS
153
n
153
LYS
153
A
ILE
154
n
154
ILE
154
A
ILE
155
n
155
ILE
155
A
ALA
156
n
156
ALA
156
A
ASP
157
n
157
ASP
157
A
LYS
158
n
158
LYS
158
A
SER
159
n
159
SER
159
A
LYS
160
n
160
LYS
160
A
PRO
161
n
161
PRO
161
A
ASN
162
n
162
ASN
162
A
GLY
163
n
163
GLY
163
A
LEU
164
n
164
LEU
164
A
GLY
165
n
165
GLY
165
A
VAL
166
n
166
VAL
166
A
ILE
167
n
167
ILE
167
A
ARG
168
n
168
ARG
168
A
PRO
169
n
169
PRO
169
A
THR
170
n
170
THR
170
A
GLU
171
n
171
GLU
171
A
VAL
172
n
172
VAL
172
A
GLN
173
n
173
GLN
173
A
ASP
174
n
174
ASP
174
A
PHE
175
n
175
PHE
175
A
LEU
176
n
176
LEU
176
A
ASN
177
n
177
ASN
177
A
GLU
178
n
178
GLU
178
A
LEU
179
n
179
LEU
179
A
ASP
180
n
180
ASP
180
A
ILE
181
n
181
ILE
181
A
ASP
182
n
182
ASP
182
A
GLU
183
n
183
GLU
183
A
ILE
184
n
184
ILE
184
A
PRO
185
n
185
PRO
185
A
GLY
186
n
186
GLY
186
A
ILE
187
n
187
ILE
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
VAL
190
n
190
VAL
190
A
LEU
191
n
191
LEU
191
A
ALA
192
n
192
ALA
192
A
ARG
193
n
193
ARG
193
A
ARG
194
n
194
ARG
194
A
LEU
195
n
195
LEU
195
A
ASN
196
n
196
ASN
196
A
GLU
197
n
197
GLU
197
A
LEU
198
n
198
LEU
198
A
GLY
199
n
199
GLY
199
A
ILE
200
n
200
ILE
200
A
GLN
201
n
201
GLN
201
A
LYS
202
n
202
LYS
202
A
LEU
203
n
203
LEU
203
A
ARG
204
n
204
ARG
204
A
ASP
205
n
205
ASP
205
A
ILE
206
n
206
ILE
206
A
LEU
207
n
207
LEU
207
A
SER
208
n
208
SER
208
A
LYS
209
n
209
LYS
209
A
ASN
210
n
210
ASN
210
A
TYR
211
n
211
TYR
211
A
ASN
212
n
212
ASN
212
A
GLU
213
n
213
GLU
213
A
LEU
214
n
214
LEU
214
A
GLU
215
n
215
GLU
215
A
LYS
216
n
216
LYS
216
A
ILE
217
n
217
ILE
217
A
THR
218
n
218
THR
218
A
GLY
219
n
219
GLY
219
A
LYS
220
n
220
LYS
220
A
ALA
221
n
221
ALA
221
A
LYS
222
n
222
LYS
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
TYR
225
n
225
TYR
225
A
LEU
226
n
226
LEU
226
A
LEU
227
n
227
LEU
227
A
LYS
228
n
228
LYS
228
A
LEU
229
n
229
LEU
229
A
ALA
230
n
230
ALA
230
A
GLN
231
n
231
GLN
231
A
ASN
232
n
232
ASN
232
A
LYS
233
n
233
LYS
233
A
TYR
234
n
234
TYR
234
A
SER
235
n
235
SER
235
A
GLU
236
n
236
GLU
236
A
PRO
237
n
237
PRO
237
A
VAL
238
n
238
VAL
238
A
GLU
239
n
239
GLU
239
A
ASN
240
n
240
ASN
240
A
LYS
241
n
241
LYS
241
A
SER
242
n
242
SER
242
A
LYS
243
n
243
LYS
243
A
ILE
244
n
244
ILE
244
A
PRO
245
n
245
PRO
245
A
HIS
246
n
246
HIS
246
A
GLY
247
n
247
GLY
247
A
ARG
248
n
248
ARG
248
A
TYR
249
n
249
TYR
249
A
LEU
250
n
250
LEU
250
A
THR
251
n
251
THR
251
A
LEU
252
n
252
LEU
252
A
PRO
253
n
253
PRO
253
A
TYR
254
n
254
TYR
254
A
ASN
255
n
255
ASN
255
A
THR
256
n
256
THR
256
A
ARG
257
n
257
ARG
257
A
ASP
258
n
258
ASP
258
A
VAL
259
n
259
VAL
259
A
LYS
260
n
260
LYS
260
A
VAL
261
n
261
VAL
261
A
ILE
262
n
262
ILE
262
A
LEU
263
n
263
LEU
263
A
PRO
264
n
264
PRO
264
A
TYR
265
n
265
TYR
265
A
LEU
266
n
266
LEU
266
A
LYS
267
n
267
LYS
267
A
LYS
268
n
268
LYS
268
A
ALA
269
n
269
ALA
269
A
ILE
270
n
270
ILE
270
A
ASN
271
n
271
ASN
271
A
GLU
272
n
272
GLU
272
A
ALA
273
n
273
ALA
273
A
TYR
274
n
274
TYR
274
A
ASN
275
n
275
ASN
275
A
LYS
276
n
276
LYS
276
A
VAL
277
n
277
VAL
277
A
ASN
278
n
278
ASN
278
A
GLY
279
n
279
GLY
279
A
ILE
280
n
280
ILE
280
A
PRO
281
n
281
PRO
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ILE
284
n
284
ILE
284
A
THR
285
n
285
THR
285
A
VAL
286
n
286
VAL
286
A
ILE
287
n
287
ILE
287
A
ALA
288
n
288
ALA
288
A
ILE
289
n
289
ILE
289
A
MET
290
n
290
MET
290
A
GLU
291
n
291
GLU
291
A
ASP
292
n
292
ASP
292
A
LEU
293
n
293
LEU
293
A
ASP
294
n
294
ASP
294
A
ILE
295
n
295
ILE
295
A
LEU
296
n
296
LEU
296
A
SER
297
n
297
SER
297
A
LYS
298
n
298
LYS
298
A
GLY
299
n
299
GLY
299
A
LYS
300
n
300
LYS
300
A
LYS
301
n
301
LYS
301
A
PHE
302
n
302
PHE
302
A
LYS
303
n
303
LYS
303
A
HIS
304
n
304
HIS
304
A
GLY
305
n
305
GLY
305
A
ILE
306
n
306
ILE
306
A
SER
307
n
307
SER
307
A
ILE
308
n
308
ILE
308
A
ASP
309
n
309
ASP
309
A
ASN
310
n
310
ASN
310
A
ALA
311
n
311
ALA
311
A
TYR
312
n
312
TYR
312
A
LYS
313
n
313
LYS
313
A
VAL
314
n
314
VAL
314
A
ALA
315
n
315
ALA
315
A
GLU
316
n
316
GLU
316
A
ASP
317
n
317
ASP
317
A
LEU
318
n
318
LEU
318
A
LEU
319
n
319
LEU
319
A
ARG
320
n
320
ARG
320
A
GLU
321
n
321
GLU
321
A
LEU
322
n
322
LEU
322
A
LEU
323
n
323
LEU
323
A
VAL
324
n
324
VAL
324
A
ARG
325
n
325
ARG
325
A
ASP
326
n
326
ASP
326
A
LYS
327
n
327
LYS
327
A
ARG
328
n
328
ARG
328
A
ARG
329
n
329
ARG
329
A
ASN
330
n
330
ASN
330
A
VAL
331
n
331
VAL
331
A
ARG
332
n
332
ARG
332
A
ARG
333
n
333
ARG
333
A
ILE
334
n
334
ILE
334
A
GLY
335
n
335
GLY
335
A
VAL
336
n
336
VAL
336
A
LYS
337
n
337
LYS
337
A
LEU
338
n
338
LEU
338
A
ASP
339
n
339
ASP
339
A
ASN
340
n
340
ASN
340
A
ILE
341
n
341
ILE
341
A
ILE
342
n
342
ILE
342
A
ILE
343
n
343
ILE
343
A
n
344
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
n
349
349
A
n
350
350
A
n
351
351
A
n
352
352
A
n
353
353
A
n
354
354
A
G
1
n
1
DG
1
P
G
2
n
2
DG
2
P
G
3
n
3
DG
3
P
A
4
n
4
DA
4
P
A
5
n
5
DA
5
P
G
6
n
6
DG
6
P
C
7
n
7
DC
7
P
C
8
n
8
DC
8
P
n
9
9
P
n
10
10
P
n
1
1
T
n
2
2
T
n
3
3
T
n
4
4
T
n
5
5
T
n
6
6
T
n
7
7
T
n
8
8
T
n
9
9
T
G
10
n
10
DG
10
T
G
11
n
11
DG
11
T
C
12
n
12
DC
12
T
T
13
n
13
DT
13
T
T
14
n
14
DT
14
T
C
15
n
15
DC
15
T
C
16
n
16
DC
16
T
C
17
n
17
DC
17
T
0.2409
0.3653
0.2357
0.5615
0.3555
0.2294
0.1118
-0.1624
0.4278
-0.4739
-0.3977
0.7625
-0.2767
-0.7856
-0.0015
0.5598
-0.0551
-0.1587
0.8711
0.0212
0.7620
refined
28.8398
-6.9281
-13.6704
X-RAY DIFFRACTION
1.8463
-0.5285
0.1141
1.9828
-0.4325
2.8612
-0.1073
-0.1846
-0.1378
0.4807
0.1995
0.3362
0.0043
-0.4616
-0.0196
0.4766
0.4580
0.0079
0.1654
0.0294
0.4194
refined
33.6408
18.8073
-9.7924
X-RAY DIFFRACTION
1.9954
-1.1864
-1.5111
2.1726
0.4863
2.1914
-0.1083
0.6174
-0.3267
-0.5675
0.1448
-0.0905
1.0049
-0.3384
-0.0003
0.7939
-0.1418
0.0560
0.6241
0.0168
0.4526
refined
44.8384
-4.1580
-28.6938
X-RAY DIFFRACTION
P
1
P
8
X-RAY DIFFRACTION
1
( CHAIN P AND RESID 1:8 ) OR ( CHAIN T AND RESID 10:17 )
T
10
T
17
X-RAY DIFFRACTION
1
( CHAIN P AND RESID 1:8 ) OR ( CHAIN T AND RESID 10:17 )
A
1
A
244
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 1:244 )
A
245
A
343
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 245:343 )
author_and_software_defined_assembly
PISA
3
trimeric
1450
-17
19570
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
165
A
O
GLY
165
A
N
VAL
145
A
N
VAL
145
A
O
ALA
146
A
O
ALA
146
A
N
VAL
3
A
N
VAL
3
A
N
VAL
6
A
N
VAL
6
A
O
ALA
107
A
O
ALA
107
A
O
TYR
108
A
O
TYR
108
A
N
GLU
100
A
N
GLU
100
A
N
VAL
101
A
N
VAL
101
A
O
LYS
241
A
O
LYS
241
A
N
SER
242
A
N
SER
242
A
O
ILE
341
A
O
ILE
341
A
O
ILE
334
A
O
ILE
334
A
N
LEU
250
A
N
LEU
250
A
O
GLY
165
A
O
GLY
165
A
N
VAL
145
A
N
VAL
145
A
O
ALA
146
A
O
ALA
146
A
N
VAL
3
A
N
VAL
3
A
N
VAL
6
A
N
VAL
6
A
O
ALA
107
A
O
ALA
107
A
O
TYR
108
A
O
TYR
108
A
N
GLU
100
A
N
GLU
100
A
N
VAL
101
A
N
VAL
101
A
O
LYS
241
A
O
LYS
241
A
N
SER
242
A
N
SER
242
A
O
ILE
341
A
O
ILE
341
A
O
GLY
335
A
O
GLY
335
A
N
ILE
287
A
N
ILE
287
A
N
VAL
286
A
N
VAL
286
A
O
LYS
298
A
O
LYS
298
A
O
ALA
44
A
O
ALA
44
A
N
VAL
30
A
N
VAL
30
A
N
VAL
29
A
N
VAL
29
A
O
VAL
74
A
O
VAL
74
1
A
SER
34
A
SER
34
1
Y
1
A
GLY
35
A
GLY
35
1
Y
1
A
ARG
36
A
ARG
36
1
Y
1
A
THR
37
A
THR
37
1
Y
1
A
LYS
38
A
LYS
38
1
Y
1
A
THR
39
A
THR
39
1
Y
1
A
SER
40
A
SER
40
1
Y
1
A
ASN
344
A
ASN
344
1
Y
1
A
LYS
345
A
LYS
345
1
Y
1
A
THR
346
A
THR
346
1
Y
1
A
ASN
347
A
ASN
347
1
Y
1
A
LEU
348
A
LEU
348
1
Y
1
A
SER
349
A
SER
349
1
Y
1
A
ASP
350
A
ASP
350
1
Y
1
A
PHE
351
A
PHE
351
1
Y
1
A
PHE
352
A
PHE
352
1
Y
1
A
ASP
353
A
ASP
353
1
Y
1
A
ILE
354
A
ILE
354
1
Y
1
P
DG
9
B
DG
9
1
Y
1
P
DG
10
B
DG
10
1
Y
1
T
DT
1
C
DT
1
1
Y
1
T
DT
2
C
DT
2
1
Y
1
T
DC
3
C
DC
3
1
Y
1
T
DC
4
C
DC
4
1
Y
1
T
DG
5
C
DG
5
1
Y
1
T
DC
6
C
DC
6
1
Y
1
T
DC
7
C
DC
7
1
Y
1
T
DC
8
C
DC
8
1
Y
1
T
DC
9
C
DC
9
1
Y
1
6.99
0.30
108.30
115.29
P
P
P
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
1.94
0.30
108.30
110.24
P
P
P
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
2.23
0.30
108.30
110.53
T
T
T
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
3.75
0.60
119.90
123.65
T
T
T
N3
C4
O4
DT
DT
DT
14
14
14
N
1
A
ALA
44
-91.32
-89.47
1
A
ALA
46
-170.48
124.15
1
A
ASN
47
-65.94
-177.28
1
A
LYS
52
-52.49
1.75
1
A
SER
103
-170.48
-177.06
1
A
GLU
137
-143.11
16.93
1
A
LYS
138
44.19
14.61
1
A
ASN
177
-66.43
-85.38
1
A
GLU
178
-60.63
93.18
1
A
LEU
179
-162.84
100.79
1
A
TYR
211
61.23
-55.17
1
A
LEU
227
-59.77
-73.16
1
A
SER
235
-169.46
50.00
1
A
TYR
254
-121.94
-168.53
1
A
ARG
257
-150.52
26.10
1
A
ASN
275
-140.56
-23.13
1
A
LYS
298
-160.02
111.06
1
A
LYS
298
-160.04
111.11
1
A
LYS
327
61.16
-52.20
1
A
ARG
328
-70.08
-89.48
1
A
ARG
332
-106.01
-62.01
1
A
ASN
340
39.45
80.50
11.3924
0.0000
-0.0000
11.3924
0.0000
-22.7848
0.3134
0.2340
0.2419
2.802
29.745
1241
13622
12411
10.00
91.31
0.48
Random
1
1.53
MOLECULAR REPLACEMENT
34.03
0.73
1.00
ML
FLAT BULK SOLVENT MODEL
45.753
0.328
2.802
29.745
0
2998
0
325
2673
0.008
3076
1.213
4205
18.532
1215
0.080
490
0.007
479
0.4022
0.3200
2.9139
101
906
68.00
0.3529
0.3001
3.0464
127
1141
86.00
0.3431
0.2713
3.2069
131
1188
89.00
0.3067
0.2511
3.4075
138
1235
93.00
0.3573
0.2345
3.6702
141
1278
95.00
0.3393
0.2353
4.0387
146
1313
98.00
0.3053
0.1882
4.6213
147
1329
98.00
0.2841
0.2189
5.8152
152
1366
98.00
0.2842
0.2359
29.7467
158
1414
97.00
2.8
30.0
4HYK
13622
12423
0.0
0.0
0.06
1
22.8
3.3
91.2
0.216
2.80
2.85
3.1
378
1
1.8
57.4
data collection
CrystalClear
phasing
PHASER
in PHENIX
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
HKL-2000
Dbh Ternary Complex (substrates partially disordered)
1
N
N
2
N
N
3
N
N
A
TYR
10
A
TYR
10
HELX_P
A
ASN
20
A
ASN
20
1
1
11
A
PRO
21
A
PRO
21
HELX_P
A
LYS
24
A
LYS
24
5
2
4
A
ASN
47
A
ASN
47
HELX_P
A
LYS
52
A
LYS
52
1
3
6
A
PRO
60
A
PRO
60
HELX_P
A
ALA
68
A
ALA
68
1
4
9
A
ARG
77
A
ARG
77
HELX_P
A
ASN
93
A
ASN
93
1
5
17
A
ASN
118
A
ASN
118
HELX_P
A
LYS
138
A
LYS
138
1
6
21
A
ASN
148
A
ASN
148
HELX_P
A
LYS
158
A
LYS
158
1
7
11
A
ARG
168
A
ARG
168
HELX_P
A
THR
170
A
THR
170
5
8
3
A
GLU
171
A
GLU
171
HELX_P
A
GLU
178
A
GLU
178
1
9
8
A
ASP
180
A
ASP
180
HELX_P
A
ILE
184
A
ILE
184
5
10
5
A
SER
189
A
SER
189
HELX_P
A
GLY
199
A
GLY
199
1
11
11
A
LYS
202
A
LYS
202
HELX_P
A
LEU
207
A
LEU
207
5
12
6
A
TYR
211
A
TYR
211
HELX_P
A
LYS
216
A
LYS
216
1
13
6
A
GLY
219
A
GLY
219
HELX_P
A
GLN
231
A
GLN
231
1
14
13
A
ASP
258
A
ASP
258
HELX_P
A
TYR
274
A
TYR
274
1
15
17
A
SER
307
A
SER
307
HELX_P
A
LYS
327
A
LYS
327
1
16
21
hydrog
WATSON-CRICK
P
DG
1
B
N1
DG
1
1_555
T
DC
17
C
N3
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
1
B
N2
DG
1
1_555
T
DC
17
C
O2
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
1
B
O6
DG
1
1_555
T
DC
17
C
N4
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N1
DG
2
1_555
T
DC
16
C
N3
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N2
DG
2
1_555
T
DC
16
C
O2
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
2
B
O6
DG
2
1_555
T
DC
16
C
N4
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
3
B
N1
DG
3
1_555
T
DC
15
C
N3
DC
15
1_555
hydrog
WATSON-CRICK
P
DG
3
B
N2
DG
3
1_555
T
DC
15
C
O2
DC
15
1_555
hydrog
WATSON-CRICK
P
DG
3
B
O6
DG
3
1_555
T
DC
15
C
N4
DC
15
1_555
hydrog
DA-DT PAIR
P
DA
4
B
N1
DA
4
1_555
T
DT
14
C
N3
DT
14
1_555
hydrog
WATSON-CRICK
P
DA
5
B
N1
DA
5
1_555
T
DT
13
C
N3
DT
13
1_555
hydrog
WATSON-CRICK
P
DA
5
B
N6
DA
5
1_555
T
DT
13
C
O4
DT
13
1_555
hydrog
WATSON-CRICK
P
DG
6
B
N1
DG
6
1_555
T
DC
12
C
N3
DC
12
1_555
hydrog
WATSON-CRICK
P
DG
6
B
N2
DG
6
1_555
T
DC
12
C
O2
DC
12
1_555
hydrog
WATSON-CRICK
P
DG
6
B
O6
DG
6
1_555
T
DC
12
C
N4
DC
12
1_555
hydrog
WATSON-CRICK
P
DC
7
B
N3
DC
7
1_555
T
DG
11
C
N1
DG
11
1_555
hydrog
WATSON-CRICK
P
DC
7
B
N4
DC
7
1_555
T
DG
11
C
O6
DG
11
1_555
hydrog
WATSON-CRICK
P
DC
7
B
O2
DC
7
1_555
T
DG
11
C
N2
DG
11
1_555
hydrog
WATSON-CRICK
P
DC
8
B
N3
DC
8
1_555
T
DG
10
C
N1
DG
10
1_555
hydrog
WATSON-CRICK
P
DC
8
B
N4
DC
8
1_555
T
DG
10
C
O6
DG
10
1_555
hydrog
WATSON-CRICK
P
DC
8
B
O2
DC
8
1_555
T
DG
10
C
N2
DG
10
1_555
TRANSFERASE/DNA
Y-family DNA polymerase, TRANSFERASE-DNA complex
A
LYS
160
A
LYS
160
1
A
PRO
161
A
PRO
161
1.48
DPO4_SULAC
UNP
1
1
Q4JB80
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
4HYK
PDB
2
4HYK
4HYK
PDB
3
4HYK
1
354
4HYK
1
354
Q4JB80
A
1
1
354
1
10
4HYK
1
10
4HYK
P
2
1
10
1
17
4HYK
1
17
4HYK
T
3
1
17
8
9
3
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
LEU
164
A
LEU
164
A
VAL
166
A
VAL
166
A
VAL
141
A
VAL
141
A
ALA
146
A
ALA
146
A
VAL
3
A
VAL
3
A
PHE
8
A
PHE
8
A
GLU
106
A
GLU
106
A
ASP
110
A
ASP
110
A
LYS
98
A
LYS
98
A
VAL
101
A
VAL
101
A
LYS
241
A
LYS
241
A
SER
242
A
SER
242
A
VAL
331
A
VAL
331
A
ILE
342
A
ILE
342
A
TYR
249
A
TYR
249
A
THR
251
A
THR
251
A
LEU
164
A
LEU
164
A
VAL
166
A
VAL
166
A
VAL
141
A
VAL
141
A
ALA
146
A
ALA
146
A
VAL
3
A
VAL
3
A
PHE
8
A
PHE
8
A
GLU
106
A
GLU
106
A
ASP
110
A
ASP
110
A
LYS
98
A
LYS
98
A
VAL
101
A
VAL
101
A
LYS
241
A
LYS
241
A
SER
242
A
SER
242
A
VAL
331
A
VAL
331
A
ILE
342
A
ILE
342
A
ILE
280
A
ILE
280
A
MET
290
A
MET
290
A
ILE
295
A
ILE
295
A
LYS
301
A
LYS
301
A
ALA
42
A
ALA
42
A
ALA
46
A
ALA
46
A
LEU
28
A
LEU
28
A
VAL
32
A
VAL
32
A
ILE
72
A
ILE
72
A
PRO
75
A
PRO
75
92
P 41 21 2