0.016621
0.009596
0.000000
0.000000
0.019192
0.000000
0.000000
0.000000
0.003213
0.00000
0.00000
0.00000
Lohman, J.R.
Bingman, C.A.
Phillips Jr., G.N.
Shen, B.
Enzyme Discovery for Natural Product Biosynthesis (NatPro)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
60.165
60.165
311.193
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
52
902
911
10.1021/bi301652y
23320975
Structure of the Bifunctional Acyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double-Hot-Dog Fold.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-06-08
MARMOSAIC 300 mm CCD
Si(111)
MAD
M
x-ray
1
0.97941
1.0
1.127
1.0
21-ID-D
APS
0.97941, 1.127
SYNCHROTRON
APS BEAMLINE 21-ID-D
37378.805
Bifunctional Methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase
1
man
polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
96.063
SULFATE ION
5
syn
non-polymer
18.015
water
113
nat
water
no
yes
(MSE)AHHHHHHVDDDDK(MSE)TITSSLDVRPEIKQAVTVRPG(MSE)CGPGSLFVGQLGDWTWETVSAQCDTDVFAAR
DASGNPTYLAFYYFRVRGGRELHPGSLTFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLY
VENFNRWVTRSAPGSNEDLVKSSPPGFRNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRD
VNGVGLLYFASYFS(MSE)VDKAALALWRRLGRSDRAFLRRVVVDQQ(MSE)CYLGNADLDSVLTLGARVRVSTETPGEE
LVDVVISDRDSGRVIAVSTLHTQHDAHDPKGEA
MAHHHHHHVDDDDKMTITSSLDVRPEIKQAVTVRPGMCGPGSLFVGQLGDWTWETVSAQCDTDVFAARDASGNPTYLAFY
YFRVRGGRELHPGSLTFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLYVENFNRWVTRSA
PGSNEDLVKSSPPGFRNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLLYFASY
FSMVDKAALALWRRLGRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTETPGEELVDVVISDRDSGRVIAVSTL
HTQHDAHDPKGEA
A
NatPro-GO.120959
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
LnmK
66869
Streptomyces atroolivaceus
469008
Escherichia coli
BL21(DE3)
plasmid
pCDF-2 Ek/LIC
1
2.17
43.45
VAPOR DIFFUSION, HANGING DROP
7.75
Protein solution: 45 mg/mL protein in 10 mM NaCl and 10 mM Tris-HCl, 2.5 mM methylmalonyl-CoA, pH 8.0. Precipitant solution: 12 - 18% glycerol, 1.3 - 1.6 M (NH4)2SO4, 0.1 M Tris-HCl, pH 7.0 - 8.5 (1:1, protein:well), VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Enzyme Discovery for Natural Product Biosynthesis
NatPro
PSI:Biology
repository
Initial release
Database references
1
0
2013-01-30
1
1
2013-02-20
Y
RCSB
Y
RCSB
2012-11-15
REL
REL
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
GOL
GLYCEROL
SO4
SULFATE ION
HOH
water
TRS
1
2
TRS
TRS
401
A
GOL
1
3
GOL
GOL
402
A
SO4
1
4
SO4
SO4
403
A
SO4
2
4
SO4
SO4
404
A
SO4
3
4
SO4
SO4
405
A
SO4
4
4
SO4
SO4
406
A
SO4
5
4
SO4
SO4
407
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
68
5
HOH
HOH
567
A
HOH
69
5
HOH
HOH
568
A
HOH
70
5
HOH
HOH
569
A
HOH
71
5
HOH
HOH
570
A
HOH
72
5
HOH
HOH
571
A
HOH
73
5
HOH
HOH
572
A
HOH
74
5
HOH
HOH
573
A
HOH
75
5
HOH
HOH
574
A
HOH
76
5
HOH
HOH
575
A
HOH
77
5
HOH
HOH
576
A
HOH
78
5
HOH
HOH
577
A
HOH
79
5
HOH
HOH
578
A
HOH
80
5
HOH
HOH
579
A
HOH
81
5
HOH
HOH
580
A
HOH
82
5
HOH
HOH
581
A
HOH
83
5
HOH
HOH
582
A
HOH
84
5
HOH
HOH
583
A
HOH
85
5
HOH
HOH
584
A
HOH
86
5
HOH
HOH
585
A
HOH
87
5
HOH
HOH
586
A
HOH
88
5
HOH
HOH
587
A
HOH
89
5
HOH
HOH
588
A
HOH
90
5
HOH
HOH
589
A
HOH
91
5
HOH
HOH
590
A
HOH
92
5
HOH
HOH
591
A
HOH
93
5
HOH
HOH
592
A
HOH
94
5
HOH
HOH
593
A
HOH
95
5
HOH
HOH
594
A
HOH
96
5
HOH
HOH
595
A
HOH
97
5
HOH
HOH
596
A
HOH
98
5
HOH
HOH
597
A
HOH
99
5
HOH
HOH
598
A
HOH
100
5
HOH
HOH
599
A
HOH
101
5
HOH
HOH
600
A
HOH
102
5
HOH
HOH
601
A
HOH
103
5
HOH
HOH
602
A
HOH
104
5
HOH
HOH
603
A
HOH
105
5
HOH
HOH
604
A
HOH
106
5
HOH
HOH
605
A
HOH
107
5
HOH
HOH
606
A
HOH
108
5
HOH
HOH
607
A
HOH
109
5
HOH
HOH
608
A
HOH
110
5
HOH
HOH
609
A
HOH
111
5
HOH
HOH
610
A
HOH
112
5
HOH
HOH
611
A
HOH
113
5
HOH
HOH
612
A
HOH
114
5
HOH
HOH
613
A
n
1
-13
A
n
2
-12
A
n
3
-11
A
n
4
-10
A
n
5
-9
A
n
6
-8
A
n
7
-7
A
n
8
-6
A
n
9
-5
A
n
10
-4
A
n
11
-3
A
n
12
-2
A
n
13
-1
A
n
14
0
A
n
15
1
A
n
16
2
A
n
17
3
A
n
18
4
A
n
19
5
A
n
20
6
A
n
21
7
A
n
22
8
A
n
23
9
A
n
24
10
A
PRO
11
n
25
PRO
11
A
GLU
12
n
26
GLU
12
A
ILE
13
n
27
ILE
13
A
LYS
14
n
28
LYS
14
A
GLN
15
n
29
GLN
15
A
ALA
16
n
30
ALA
16
A
VAL
17
n
31
VAL
17
A
THR
18
n
32
THR
18
A
VAL
19
n
33
VAL
19
A
ARG
20
n
34
ARG
20
A
PRO
21
n
35
PRO
21
A
GLY
22
n
36
GLY
22
A
MSE
23
n
37
MSE
23
A
CYS
24
n
38
CYS
24
A
GLY
25
n
39
GLY
25
A
PRO
26
n
40
PRO
26
A
GLY
27
n
41
GLY
27
A
SER
28
n
42
SER
28
A
LEU
29
n
43
LEU
29
A
PHE
30
n
44
PHE
30
A
VAL
31
n
45
VAL
31
A
GLY
32
n
46
GLY
32
A
GLN
33
n
47
GLN
33
A
LEU
34
n
48
LEU
34
A
GLY
35
n
49
GLY
35
A
ASP
36
n
50
ASP
36
A
TRP
37
n
51
TRP
37
A
THR
38
n
52
THR
38
A
TRP
39
n
53
TRP
39
A
GLU
40
n
54
GLU
40
A
THR
41
n
55
THR
41
A
VAL
42
n
56
VAL
42
A
SER
43
n
57
SER
43
A
ALA
44
n
58
ALA
44
A
GLN
45
n
59
GLN
45
A
CYS
46
n
60
CYS
46
A
ASP
47
n
61
ASP
47
A
THR
48
n
62
THR
48
A
ASP
49
n
63
ASP
49
A
VAL
50
n
64
VAL
50
A
PHE
51
n
65
PHE
51
A
ALA
52
n
66
ALA
52
A
ALA
53
n
67
ALA
53
A
ARG
54
n
68
ARG
54
A
ASP
55
n
69
ASP
55
A
ALA
56
n
70
ALA
56
A
SER
57
n
71
SER
57
A
GLY
58
n
72
GLY
58
A
ASN
59
n
73
ASN
59
A
PRO
60
n
74
PRO
60
A
THR
61
n
75
THR
61
A
TYR
62
n
76
TYR
62
A
LEU
63
n
77
LEU
63
A
ALA
64
n
78
ALA
64
A
PHE
65
n
79
PHE
65
A
TYR
66
n
80
TYR
66
A
TYR
67
n
81
TYR
67
A
PHE
68
n
82
PHE
68
A
ARG
69
n
83
ARG
69
A
VAL
70
n
84
VAL
70
A
ARG
71
n
85
ARG
71
A
GLY
72
n
86
GLY
72
A
GLY
73
n
87
GLY
73
A
ARG
74
n
88
ARG
74
A
GLU
75
n
89
GLU
75
A
LEU
76
n
90
LEU
76
A
HIS
77
n
91
HIS
77
A
PRO
78
n
92
PRO
78
A
GLY
79
n
93
GLY
79
A
SER
80
n
94
SER
80
A
LEU
81
n
95
LEU
81
A
THR
82
n
96
THR
82
A
PHE
83
n
97
PHE
83
A
GLY
84
n
98
GLY
84
A
ASP
85
n
99
ASP
85
A
ARG
86
n
100
ARG
86
A
LEU
87
n
101
LEU
87
A
THR
88
n
102
THR
88
A
VAL
89
n
103
VAL
89
A
THR
90
n
104
THR
90
A
SER
91
n
105
SER
91
A
GLY
92
n
106
GLY
92
A
CYS
93
n
107
CYS
93
A
TYR
94
n
108
TYR
94
A
ASP
95
n
109
ASP
95
A
GLN
96
n
110
GLN
96
A
GLY
97
n
111
GLY
97
A
THR
98
n
112
THR
98
A
GLU
99
n
113
GLU
99
A
SER
100
n
114
SER
100
A
VAL
101
n
115
VAL
101
A
LEU
102
n
116
LEU
102
A
THR
103
n
117
THR
103
A
LEU
104
n
118
LEU
104
A
HIS
105
n
119
HIS
105
A
ARG
106
n
120
ARG
106
A
ILE
107
n
121
ILE
107
A
ASP
108
n
122
ASP
108
A
ARG
109
n
123
ARG
109
A
ALA
110
n
124
ALA
110
A
GLY
111
n
125
GLY
111
A
SER
112
n
126
SER
112
A
ALA
113
n
127
ASP
113
A
ASP
114
n
128
ASP
114
A
ALA
115
n
129
ALA
115
A
GLN
116
n
130
GLN
116
A
ARG
117
n
131
ARG
117
A
PRO
118
n
132
PRO
118
A
LEU
119
n
133
LEU
119
A
ASP
120
n
134
ASP
120
A
LEU
121
n
135
LEU
121
A
HIS
122
n
136
HIS
122
A
GLU
123
n
137
GLU
123
A
PHE
124
n
138
PHE
124
A
TYR
125
n
139
TYR
125
A
GLU
126
n
140
GLU
126
A
ARG
127
n
141
ARG
127
A
PRO
128
n
142
PRO
128
A
ARG
129
n
143
ARG
129
A
ASP
130
n
144
ASP
130
A
GLY
131
n
145
GLY
131
A
SER
132
n
146
SER
132
A
LEU
133
n
147
LEU
133
A
TYR
134
n
148
TYR
134
A
VAL
135
n
149
VAL
135
A
GLU
136
n
150
GLU
136
A
ASN
137
n
151
ASN
137
A
PHE
138
n
152
PHE
138
A
ASN
139
n
153
ASN
139
A
ARG
140
n
154
ARG
140
A
TRP
141
n
155
TRP
141
A
VAL
142
n
156
VAL
142
A
THR
143
n
157
THR
143
A
ARG
144
n
158
ARG
144
A
SER
145
n
159
SER
145
A
ALA
146
n
160
ALA
146
A
PRO
147
n
161
PRO
147
A
GLY
148
n
162
GLY
148
A
SER
149
n
163
SER
149
A
ASN
150
n
164
ASN
150
A
GLU
151
n
165
GLU
151
A
ASP
152
n
166
ASP
152
A
LEU
153
n
167
LEU
153
A
VAL
154
n
168
VAL
154
A
LYS
155
n
169
LYS
155
A
SER
156
n
170
SER
156
A
SER
157
n
171
SER
157
A
PRO
158
n
172
PRO
158
A
PRO
159
n
173
PRO
159
A
GLY
160
n
174
GLY
160
A
PHE
161
n
175
PHE
161
A
ARG
162
n
176
ARG
162
A
ASN
163
n
177
ASN
163
A
ASP
164
n
178
ASP
164
A
GLY
165
n
179
GLY
165
A
LEU
166
n
180
LEU
166
A
PRO
167
n
181
PRO
167
A
GLN
168
n
182
GLN
168
A
LEU
169
n
183
LEU
169
A
PRO
170
n
184
PRO
170
A
ALA
171
n
185
ALA
171
A
ALA
172
n
186
ALA
172
A
TYR
173
n
187
TYR
173
A
SER
174
n
188
SER
174
A
PRO
175
n
189
PRO
175
A
ARG
176
n
190
ARG
176
A
ALA
177
n
191
ALA
177
A
VAL
178
n
192
VAL
178
A
TYR
179
n
193
TYR
179
A
ARG
180
n
194
ARG
180
A
GLU
181
n
195
GLU
181
A
ALA
182
n
196
ALA
182
A
ARG
183
n
197
ARG
183
A
THR
184
n
198
THR
184
A
ALA
185
n
199
ALA
185
A
HIS
186
n
200
HIS
186
A
THR
187
n
201
THR
187
A
PHE
188
n
202
PHE
188
A
ARG
189
n
203
ARG
189
A
ALA
190
n
204
ALA
190
A
LEU
191
n
205
LEU
191
A
ASP
192
n
206
ASP
192
A
GLU
193
n
207
GLU
193
A
PRO
194
n
208
PRO
194
A
GLY
195
n
209
GLY
195
A
PHE
196
n
210
PHE
196
A
ARG
197
n
211
ARG
197
A
LEU
198
n
212
LEU
198
A
LEU
199
n
213
LEU
199
A
PRO
200
n
214
PRO
200
A
ASP
201
n
215
ASP
201
A
THR
202
n
216
THR
202
A
VAL
203
n
217
VAL
203
A
GLU
204
n
218
GLU
204
A
VAL
205
n
219
VAL
205
A
GLU
206
n
220
GLU
206
A
HIS
207
n
221
HIS
207
A
PRO
208
n
222
PRO
208
A
VAL
209
n
223
VAL
209
A
ASP
210
n
224
ASP
210
A
ILE
211
n
225
ILE
211
A
VAL
212
n
226
VAL
212
A
ARG
213
n
227
ARG
213
A
ASP
214
n
228
ASP
214
A
VAL
215
n
229
VAL
215
A
ASN
216
n
230
ASN
216
A
GLY
217
n
231
GLY
217
A
VAL
218
n
232
VAL
218
A
GLY
219
n
233
GLY
219
A
LEU
220
n
234
LEU
220
A
LEU
221
n
235
LEU
221
A
TYR
222
n
236
TYR
222
A
PHE
223
n
237
PHE
223
A
ALA
224
n
238
ALA
224
A
SER
225
n
239
SER
225
A
TYR
226
n
240
TYR
226
A
PHE
227
n
241
PHE
227
A
SER
228
n
242
SER
228
A
MSE
229
n
243
MSE
229
A
VAL
230
n
244
VAL
230
A
ASP
231
n
245
ASP
231
A
LYS
232
n
246
LYS
232
A
ALA
233
n
247
ALA
233
A
ALA
234
n
248
ALA
234
A
LEU
235
n
249
LEU
235
A
ALA
236
n
250
ALA
236
A
LEU
237
n
251
LEU
237
A
TRP
238
n
252
TRP
238
A
ARG
239
n
253
ARG
239
A
ARG
240
n
254
ARG
240
A
LEU
241
n
255
LEU
241
A
GLY
242
n
256
GLY
242
A
ARG
243
n
257
ARG
243
A
SER
244
n
258
SER
244
A
ASP
245
n
259
ASP
245
A
ARG
246
n
260
ARG
246
A
ALA
247
n
261
ALA
247
A
PHE
248
n
262
PHE
248
A
LEU
249
n
263
LEU
249
A
ARG
250
n
264
ARG
250
A
ARG
251
n
265
ARG
251
A
VAL
252
n
266
VAL
252
A
VAL
253
n
267
VAL
253
A
VAL
254
n
268
VAL
254
A
ASP
255
n
269
ASP
255
A
GLN
256
n
270
GLN
256
A
GLN
257
n
271
GLN
257
A
MSE
258
n
272
MSE
258
A
CYS
259
n
273
CYS
259
A
TYR
260
n
274
TYR
260
A
LEU
261
n
275
LEU
261
A
GLY
262
n
276
GLY
262
A
ASN
263
n
277
ASN
263
A
ALA
264
n
278
ALA
264
A
ASP
265
n
279
ASP
265
A
LEU
266
n
280
LEU
266
A
ASP
267
n
281
ASP
267
A
SER
268
n
282
SER
268
A
VAL
269
n
283
VAL
269
A
LEU
270
n
284
LEU
270
A
THR
271
n
285
THR
271
A
LEU
272
n
286
LEU
272
A
GLY
273
n
287
GLY
273
A
ALA
274
n
288
ALA
274
A
ARG
275
n
289
ARG
275
A
VAL
276
n
290
VAL
276
A
ARG
277
n
291
ARG
277
A
VAL
278
n
292
VAL
278
A
SER
279
n
293
SER
279
A
THR
280
n
294
THR
280
A
GLU
281
n
295
GLU
281
A
THR
282
n
296
THR
282
A
PRO
283
n
297
PRO
283
A
GLY
284
n
298
GLY
284
A
GLU
285
n
299
GLU
285
A
GLU
286
n
300
GLU
286
A
LEU
287
n
301
LEU
287
A
VAL
288
n
302
VAL
288
A
ASP
289
n
303
ASP
289
A
VAL
290
n
304
VAL
290
A
VAL
291
n
305
VAL
291
A
ILE
292
n
306
ILE
292
A
SER
293
n
307
SER
293
A
ASP
294
n
308
ASP
294
A
ARG
295
n
309
ARG
295
A
ASP
296
n
310
ASP
296
A
SER
297
n
311
SER
297
A
GLY
298
n
312
GLY
298
A
ARG
299
n
313
ARG
299
A
VAL
300
n
314
VAL
300
A
ILE
301
n
315
ILE
301
A
ALA
302
n
316
ALA
302
A
VAL
303
n
317
VAL
303
A
SER
304
n
318
SER
304
A
THR
305
n
319
THR
305
A
LEU
306
n
320
LEU
306
A
HIS
307
n
321
HIS
307
A
THR
308
n
322
THR
308
A
GLN
309
n
323
GLN
309
A
n
324
310
A
n
325
311
A
n
326
312
A
n
327
313
A
n
328
314
A
n
329
315
A
n
330
316
A
n
331
317
A
n
332
318
A
n
333
319
A
author_and_software_defined_assembly
PISA
2
dimeric
6350
-128
23940
A
MSE
23
SELENOMETHIONINE
A
MSE
37
MET
A
MSE
229
SELENOMETHIONINE
A
MSE
243
MET
A
MSE
258
SELENOMETHIONINE
A
MSE
272
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
51.8655000000
A
N
VAL
17
A
N
VAL
31
A
O
LEU
87
A
O
LEU
101
A
N
TYR
94
A
N
TYR
108
A
O
LEU
102
A
O
LEU
116
A
N
HIS
105
A
N
HIS
119
A
O
VAL
135
A
O
VAL
149
A
O
PHE
138
A
O
PHE
152
A
N
TYR
67
A
N
TYR
81
A
N
TYR
66
A
N
TYR
80
A
O
TYR
260
A
O
TYR
274
A
N
ASP
255
A
N
ASP
269
A
O
HIS
307
A
O
HIS
321
A
O
ARG
299
A
O
ARG
313
A
N
ASP
294
A
N
ASP
308
A
O
LEU
287
A
O
LEU
301
A
N
ARG
277
A
N
ARG
291
A
O
VAL
278
A
O
VAL
292
A
N
ARG
197
A
N
ARG
211
A
O
VAL
154
A
O
VAL
168
A
N
THR
143
A
N
THR
157
A
O
PHE
138
A
O
PHE
152
A
N
TYR
67
A
N
TYR
81
A
N
TYR
66
A
N
TYR
80
A
O
TYR
260
A
O
TYR
274
A
N
ASP
255
A
N
ASP
269
A
O
HIS
307
A
O
HIS
321
A
O
ARG
299
A
O
ARG
313
A
N
ASP
294
A
N
ASP
308
A
O
LEU
287
A
O
LEU
301
A
N
ARG
277
A
N
ARG
291
A
O
LEU
270
A
O
LEU
284
A
N
HIS
207
A
N
HIS
221
1
A
CG
ASP
113
A
CG
ASP
127
1
Y
1
A
OD1
ASP
113
A
OD1
ASP
127
1
Y
1
A
OD2
ASP
113
A
OD2
ASP
127
1
Y
1
A
MSE
-13
A
MSE
1
1
Y
1
A
ALA
-12
A
ALA
2
1
Y
1
A
HIS
-11
A
HIS
3
1
Y
1
A
HIS
-10
A
HIS
4
1
Y
1
A
HIS
-9
A
HIS
5
1
Y
1
A
HIS
-8
A
HIS
6
1
Y
1
A
HIS
-7
A
HIS
7
1
Y
1
A
HIS
-6
A
HIS
8
1
Y
1
A
VAL
-5
A
VAL
9
1
Y
1
A
ASP
-4
A
ASP
10
1
Y
1
A
ASP
-3
A
ASP
11
1
Y
1
A
ASP
-2
A
ASP
12
1
Y
1
A
ASP
-1
A
ASP
13
1
Y
1
A
LYS
0
A
LYS
14
1
Y
1
A
MSE
1
A
MSE
15
1
Y
1
A
THR
2
A
THR
16
1
Y
1
A
ILE
3
A
ILE
17
1
Y
1
A
THR
4
A
THR
18
1
Y
1
A
SER
5
A
SER
19
1
Y
1
A
SER
6
A
SER
20
1
Y
1
A
LEU
7
A
LEU
21
1
Y
1
A
ASP
8
A
ASP
22
1
Y
1
A
VAL
9
A
VAL
23
1
Y
1
A
ARG
10
A
ARG
24
1
Y
1
A
HIS
310
A
HIS
324
1
Y
1
A
ASP
311
A
ASP
325
1
Y
1
A
ALA
312
A
ALA
326
1
Y
1
A
HIS
313
A
HIS
327
1
Y
1
A
ASP
314
A
ASP
328
1
Y
1
A
PRO
315
A
PRO
329
1
Y
1
A
LYS
316
A
LYS
330
1
Y
1
A
GLY
317
A
GLY
331
1
Y
1
A
GLU
318
A
GLU
332
1
Y
1
A
ALA
319
A
ALA
333
1
Y
1
A
A
O
O
HOH
HOH
569
604
2.04
1
A
MSE
23
-142.66
22.51
1
A
SER
157
-170.99
130.57
1
A
ASN
263
-102.18
-166.29
1
A
GLU
281
-132.05
-34.60
23.100
0.01
0.01
0.00
0.01
0.00
-0.02
0.932
0.903
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25381
0.19977
0.20245
2.25
28.06
869
16907
15889
5.2
100.00
5.519
0.141
RANDOM
1
THROUGHOUT
MAD
0.300
0.231
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.25
28.06
113
2492
39
0
2340
0.009
0.021
2448
1.233
1.967
3335
6.077
5.000
304
34.695
22.131
122
14.211
15.000
372
16.910
15.000
31
0.082
0.200
360
0.005
0.021
1906
0.573
1.500
1499
1.098
2.000
2418
1.625
3.000
949
2.606
4.500
914
0.266
0.196
2.308
67
1147
20
100.00
2.25
28.06
4HZN
17112
16907
-3
0.074
1
28.7
17.3
98.8
data collection
HKL-2000
phasing
SOLVE
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
SCALEPACK
Bifunctional Methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase
The Structure of the Bifunctional Acetyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double Hot Dog Fold
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
ARG
20
A
ARG
34
HELX_P
A
CYS
24
A
CYS
38
5
1
5
A
SER
28
A
SER
42
HELX_P
A
CYS
46
A
CYS
60
1
2
19
A
ASP
49
A
ASP
63
HELX_P
A
ALA
53
A
ALA
67
5
3
5
A
HIS
77
A
HIS
91
HELX_P
A
LEU
81
A
LEU
95
5
4
5
A
ASP
120
A
ASP
134
HELX_P
A
GLU
126
A
GLU
140
1
5
7
A
SER
174
A
SER
188
HELX_P
A
HIS
186
A
HIS
200
1
6
13
A
TYR
222
A
TYR
236
HELX_P
A
LEU
241
A
LEU
255
1
7
20
A
SER
244
A
SER
258
HELX_P
A
ARG
251
A
ARG
265
1
8
8
A
ARG
295
A
ARG
309
HELX_P
A
GLY
298
A
GLY
312
5
9
4
covale
1.331
A
GLY
22
A
C
GLY
36
1_555
A
MSE
23
A
N
MSE
37
1_555
covale
1.329
A
MSE
23
A
C
MSE
37
1_555
A
CYS
24
A
N
CYS
38
1_555
covale
1.333
A
SER
228
A
C
SER
242
1_555
A
MSE
229
A
N
MSE
243
1_555
covale
1.325
A
MSE
229
A
C
MSE
243
1_555
A
VAL
230
A
N
VAL
244
1_555
covale
1.327
A
GLN
257
A
C
GLN
271
1_555
A
MSE
258
A
N
MSE
272
1_555
covale
1.321
A
MSE
258
A
C
MSE
272
1_555
A
CYS
259
A
N
CYS
273
1_555
TRANSFERASE
Structural Genomics, Protein Structure Initiative, Enzyme Discovery for Natural Product Biosynthesis, NatPro, PSI-Biology, Double Hot Dog Fold, Bifunctional methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase, Acyl Carrier Protein (LnmK) methylmalonyl-CoA, TRANSFERASE
Q8GGP1_STRAZ
UNP
1
1
Q8GGP1
MTITSSLDVRPEIKQAVTVRPGMCGPGSLFVGQLGDWTWETVSAQCDTDVFAARDASGNPTYLAFYYFRVRGGRELHPGS
LTFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPG
FRNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYFSMVDKAALALWRR
LGRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKGEA
1
319
4HZN
1
319
Q8GGP1
A
1
15
333
1
EXPRESSION TAG
MSE
-13
4HZN
A
Q8GGP1
UNP
1
1
EXPRESSION TAG
ALA
-12
4HZN
A
Q8GGP1
UNP
2
1
EXPRESSION TAG
HIS
-11
4HZN
A
Q8GGP1
UNP
3
1
EXPRESSION TAG
HIS
-10
4HZN
A
Q8GGP1
UNP
4
1
EXPRESSION TAG
HIS
-9
4HZN
A
Q8GGP1
UNP
5
1
EXPRESSION TAG
HIS
-8
4HZN
A
Q8GGP1
UNP
6
1
EXPRESSION TAG
HIS
-7
4HZN
A
Q8GGP1
UNP
7
1
EXPRESSION TAG
HIS
-6
4HZN
A
Q8GGP1
UNP
8
1
EXPRESSION TAG
VAL
-5
4HZN
A
Q8GGP1
UNP
9
1
EXPRESSION TAG
ASP
-4
4HZN
A
Q8GGP1
UNP
10
1
EXPRESSION TAG
ASP
-3
4HZN
A
Q8GGP1
UNP
11
1
EXPRESSION TAG
ASP
-2
4HZN
A
Q8GGP1
UNP
12
1
EXPRESSION TAG
ASP
-1
4HZN
A
Q8GGP1
UNP
13
1
EXPRESSION TAG
LYS
0
4HZN
A
Q8GGP1
UNP
14
10
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
13
A
ILE
27
A
THR
18
A
THR
32
A
ARG
86
A
ARG
100
A
ASP
95
A
ASP
109
A
SER
100
A
SER
114
A
ARG
109
A
ARG
123
A
SER
132
A
SER
146
A
THR
143
A
THR
157
A
TYR
62
A
TYR
76
A
ARG
71
A
ARG
85
A
VAL
252
A
VAL
266
A
TYR
260
A
TYR
274
A
ARG
299
A
ARG
313
A
GLN
309
A
GLN
323
A
GLU
286
A
GLU
300
A
ASP
294
A
ASP
308
A
VAL
269
A
VAL
283
A
SER
279
A
SER
293
A
PHE
196
A
PHE
210
A
LEU
198
A
LEU
212
A
VAL
154
A
VAL
168
A
LYS
155
A
LYS
169
A
SER
132
A
SER
146
A
THR
143
A
THR
157
A
TYR
62
A
TYR
76
A
ARG
71
A
ARG
85
A
VAL
252
A
VAL
266
A
TYR
260
A
TYR
274
A
ARG
299
A
ARG
313
A
GLN
309
A
GLN
323
A
GLU
286
A
GLU
300
A
ASP
294
A
ASP
308
A
VAL
269
A
VAL
283
A
SER
279
A
SER
293
A
VAL
203
A
VAL
217
A
PRO
208
A
PRO
222
BINDING SITE FOR RESIDUE TRS A 401
Software
8
BINDING SITE FOR RESIDUE GOL A 402
Software
8
BINDING SITE FOR RESIDUE SO4 A 403
Software
4
BINDING SITE FOR RESIDUE SO4 A 404
Software
2
BINDING SITE FOR RESIDUE SO4 A 405
Software
2
BINDING SITE FOR RESIDUE SO4 A 406
Software
5
BINDING SITE FOR RESIDUE SO4 A 407
Software
4
A
GLU
151
A
GLU
165
8
1_555
A
ASP
265
A
ASP
279
8
1_555
A
ASP
267
A
ASP
281
8
1_555
A
SER
268
A
SER
282
8
1_555
A
ASP
294
A
ASP
308
8
1_555
A
ASP
296
A
ASP
310
8
1_555
A
SER
297
A
SER
311
8
1_555
A
HOH
601
I
HOH
8
1_555
A
ALA
64
A
ALA
78
8
1_555
A
PHE
65
A
PHE
79
8
1_555
A
PHE
223
A
PHE
237
8
1_555
A
TYR
226
A
TYR
240
8
1_555
A
GLY
262
A
GLY
276
8
1_555
A
ASN
263
A
ASN
277
8
1_555
A
HOH
596
I
HOH
8
1_555
A
HOH
611
I
HOH
8
1_555
A
ARG
69
A
ARG
83
4
1_555
A
ARG
71
A
ARG
85
4
1_555
A
HOH
537
I
HOH
4
1_555
A
HOH
592
I
HOH
4
1_555
A
ARG
127
A
ARG
141
2
8_665
A
ARG
183
A
ARG
197
2
1_555
A
ARG
140
A
ARG
154
2
1_555
A
ARG
176
A
ARG
190
2
1_555
A
SER
174
A
SER
188
5
1_555
A
ARG
176
A
ARG
190
5
1_555
A
ARG
180
A
ARG
194
5
1_555
A
ARG
295
A
ARG
309
5
8_565
A
HOH
510
I
HOH
5
1_555
A
SER
244
A
SER
258
4
1_555
A
ARG
246
A
ARG
260
4
1_555
A
ALA
247
A
ALA
261
4
1_555
A
ARG
250
A
ARG
264
4
1_555
178
P 61 2 2