0.016747
0.009669
0.000000
0.000000
0.019338
0.000000
0.000000
0.000000
0.003214
0.00000
0.00000
0.00000
Lohman, J.R.
Bingman, C.A.
Phillips Jr., G.N.
Shen, B.
Enzyme Discovery for Natural Product Biosynthesis (NatPro)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
59.711
59.711
311.113
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C21 H36 N7 O16 P3 S
767.534
COENZYME A
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
Y
75
N
N
Y
76
N
C
Y
77
N
N
Y
78
N
C
Y
79
N
C
Y
80
N
C
N
81
N
N
Y
82
N
N
Y
83
N
C
Y
84
N
N
N
85
R
C
N
86
R
C
N
87
N
O
N
88
S
C
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
R
C
N
95
N
O
N
96
N
C
N
97
N
O
N
98
S
P
N
99
N
O
N
100
N
O
N
101
N
O
N
102
S
P
N
103
N
O
N
104
N
O
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
R
C
N
111
N
O
N
112
N
C
N
113
N
O
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
C
N
121
N
C
N
122
N
S
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
R
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
S
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
N
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
Y
227
N
C
Y
228
N
N
Y
229
N
C
Y
230
N
C
Y
231
N
N
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
S
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
N
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
S
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
S
N
390
N
O
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
R
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
N
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
sing
Y
71
N
doub
Y
72
N
doub
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
Y
76
N
sing
Y
77
N
sing
Y
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
Y
82
N
doub
Y
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
Y
226
N
sing
Y
227
N
doub
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
52
902
911
10.1021/bi301652y
23320975
Structure of the Bifunctional Acyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double-Hot-Dog Fold.
2013
10.2210/pdb4hzp/pdb
pdb_00004hzp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2009-12-10
MAR scanner 300 mm plate
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97857
1.0
21-ID-G
APS
0.97857
SYNCHROTRON
APS BEAMLINE 21-ID-G
35263.285
Bifunctional methylmalonyl-CoA:ACP Acyltransferase/Decarboxylase
T2S, Y62F
1
man
polymer
767.534
COENZYME A
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
160
nat
water
no
no
SITSSLDVRPEIKQAVTVRPGMCGPGSLFVGQLGDWTWETVSAQCDTDVFAARDASGNPTFLAFYYFRVRGGRELHPGSL
TFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGF
RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYFSMVDKAALALWRRL
GRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKGEA
SITSSLDVRPEIKQAVTVRPGMCGPGSLFVGQLGDWTWETVSAQCDTDVFAARDASGNPTFLAFYYFRVRGGRELHPGSL
TFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGF
RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYFSMVDKAALALWRRL
GRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKGEA
A
NatPro-GO.120959
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
LnmK
66869
Streptomyces atroolivaceus
469008
Escherichia coli
BL21(DE3)
plasmid
pETDuet-1
1
2.27
45.82
VAPOR DIFFUSION, HANGING DROP
7.0
Protein: 20 mg/mL in 100 mM NaCl and 10 mM Tris-HCl, pH 8.0 plus 10 mM methylmalonyl-CoA. Precipitant: 20 - 23% MEPEG 2000, 0.25-0.35 M (NH4)2SO4 and 0.1 M Bis-tris propane-HCl, pH 7.0 in 4 L drops (1:1, protein:well). , VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Enzyme Discovery for Natural Product Biosynthesis
NatPro
PSI:Biology
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-30
1
1
2013-02-20
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Mutant protein with ligand bound
Mutant protein with ligand bound
Y
RCSB
Y
RCSB
2012-11-15
REL
REL
COA
COENZYME A
CL
CHLORIDE ION
SO4
SULFATE ION
HOH
water
4HZN
PDB Entry 4HZN
PDB
experimental model
COA
1
2
COA
COA
401
A
CL
1
3
CL
CL
402
A
SO4
1
4
SO4
SO4
403
A
SO4
2
4
SO4
SO4
404
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
HOH
69
5
HOH
HOH
569
A
HOH
70
5
HOH
HOH
570
A
HOH
71
5
HOH
HOH
571
A
HOH
72
5
HOH
HOH
572
A
HOH
73
5
HOH
HOH
573
A
HOH
74
5
HOH
HOH
574
A
HOH
75
5
HOH
HOH
575
A
HOH
76
5
HOH
HOH
576
A
HOH
77
5
HOH
HOH
577
A
HOH
78
5
HOH
HOH
578
A
HOH
79
5
HOH
HOH
579
A
HOH
80
5
HOH
HOH
580
A
HOH
81
5
HOH
HOH
581
A
HOH
82
5
HOH
HOH
582
A
HOH
83
5
HOH
HOH
583
A
HOH
84
5
HOH
HOH
584
A
HOH
85
5
HOH
HOH
585
A
HOH
86
5
HOH
HOH
586
A
HOH
87
5
HOH
HOH
587
A
HOH
88
5
HOH
HOH
588
A
HOH
89
5
HOH
HOH
589
A
HOH
90
5
HOH
HOH
590
A
HOH
91
5
HOH
HOH
591
A
HOH
92
5
HOH
HOH
592
A
HOH
93
5
HOH
HOH
593
A
HOH
94
5
HOH
HOH
594
A
HOH
95
5
HOH
HOH
595
A
HOH
96
5
HOH
HOH
596
A
HOH
97
5
HOH
HOH
597
A
HOH
98
5
HOH
HOH
598
A
HOH
99
5
HOH
HOH
599
A
HOH
100
5
HOH
HOH
600
A
HOH
101
5
HOH
HOH
601
A
HOH
102
5
HOH
HOH
602
A
HOH
103
5
HOH
HOH
603
A
HOH
104
5
HOH
HOH
604
A
HOH
105
5
HOH
HOH
605
A
HOH
106
5
HOH
HOH
606
A
HOH
107
5
HOH
HOH
607
A
HOH
108
5
HOH
HOH
608
A
HOH
109
5
HOH
HOH
609
A
HOH
110
5
HOH
HOH
610
A
HOH
111
5
HOH
HOH
611
A
HOH
112
5
HOH
HOH
612
A
HOH
113
5
HOH
HOH
613
A
HOH
114
5
HOH
HOH
614
A
HOH
115
5
HOH
HOH
615
A
HOH
116
5
HOH
HOH
616
A
HOH
117
5
HOH
HOH
617
A
HOH
118
5
HOH
HOH
618
A
HOH
119
5
HOH
HOH
619
A
HOH
120
5
HOH
HOH
620
A
HOH
121
5
HOH
HOH
621
A
HOH
122
5
HOH
HOH
622
A
HOH
123
5
HOH
HOH
623
A
HOH
124
5
HOH
HOH
624
A
HOH
125
5
HOH
HOH
625
A
HOH
126
5
HOH
HOH
626
A
HOH
127
5
HOH
HOH
627
A
HOH
128
5
HOH
HOH
628
A
HOH
129
5
HOH
HOH
629
A
HOH
130
5
HOH
HOH
630
A
HOH
131
5
HOH
HOH
631
A
HOH
132
5
HOH
HOH
632
A
HOH
133
5
HOH
HOH
633
A
HOH
134
5
HOH
HOH
634
A
HOH
135
5
HOH
HOH
635
A
HOH
136
5
HOH
HOH
636
A
HOH
137
5
HOH
HOH
637
A
HOH
138
5
HOH
HOH
638
A
HOH
139
5
HOH
HOH
639
A
HOH
140
5
HOH
HOH
640
A
HOH
141
5
HOH
HOH
641
A
HOH
142
5
HOH
HOH
642
A
HOH
143
5
HOH
HOH
643
A
HOH
144
5
HOH
HOH
644
A
HOH
145
5
HOH
HOH
645
A
HOH
146
5
HOH
HOH
646
A
HOH
147
5
HOH
HOH
647
A
HOH
148
5
HOH
HOH
648
A
HOH
149
5
HOH
HOH
649
A
HOH
150
5
HOH
HOH
650
A
HOH
151
5
HOH
HOH
651
A
HOH
152
5
HOH
HOH
652
A
HOH
153
5
HOH
HOH
653
A
HOH
154
5
HOH
HOH
654
A
HOH
155
5
HOH
HOH
655
A
HOH
156
5
HOH
HOH
656
A
HOH
157
5
HOH
HOH
657
A
HOH
158
5
HOH
HOH
658
A
HOH
159
5
HOH
HOH
659
A
HOH
160
5
HOH
HOH
660
A
n
1
2
A
n
2
3
A
n
3
4
A
n
4
5
A
n
5
6
A
n
6
7
A
n
7
8
A
n
8
9
A
n
9
10
A
n
10
11
A
GLU
12
n
11
GLU
12
A
ILE
13
n
12
ILE
13
A
LYS
14
n
13
LYS
14
A
GLN
15
n
14
GLN
15
A
ALA
16
n
15
ALA
16
A
VAL
17
n
16
VAL
17
A
THR
18
n
17
THR
18
A
VAL
19
n
18
VAL
19
A
ARG
20
n
19
ARG
20
A
PRO
21
n
20
PRO
21
A
GLY
22
n
21
GLY
22
A
MET
23
n
22
MET
23
A
CYS
24
n
23
CYS
24
A
GLY
25
n
24
GLY
25
A
PRO
26
n
25
PRO
26
A
GLY
27
n
26
GLY
27
A
SER
28
n
27
SER
28
A
LEU
29
n
28
LEU
29
A
PHE
30
n
29
PHE
30
A
VAL
31
n
30
VAL
31
A
GLY
32
n
31
GLY
32
A
GLN
33
n
32
GLN
33
A
LEU
34
n
33
LEU
34
A
GLY
35
n
34
GLY
35
A
ASP
36
n
35
ASP
36
A
TRP
37
n
36
TRP
37
A
THR
38
n
37
THR
38
A
TRP
39
n
38
TRP
39
A
GLU
40
n
39
GLU
40
A
THR
41
n
40
THR
41
A
VAL
42
n
41
VAL
42
A
SER
43
n
42
SER
43
A
ALA
44
n
43
ALA
44
A
GLN
45
n
44
GLN
45
A
CYS
46
n
45
CYS
46
A
ASP
47
n
46
ASP
47
A
THR
48
n
47
THR
48
A
ASP
49
n
48
ASP
49
A
VAL
50
n
49
VAL
50
A
PHE
51
n
50
PHE
51
A
ALA
52
n
51
ALA
52
A
ALA
53
n
52
ALA
53
A
ARG
54
n
53
ARG
54
A
ASP
55
n
54
ASP
55
A
ALA
56
n
55
ALA
56
A
SER
57
n
56
SER
57
A
GLY
58
n
57
GLY
58
A
ASN
59
n
58
ASN
59
A
PRO
60
n
59
PRO
60
A
THR
61
n
60
THR
61
A
PHE
62
n
61
PHE
62
A
LEU
63
n
62
LEU
63
A
ALA
64
n
63
ALA
64
A
PHE
65
n
64
PHE
65
A
TYR
66
n
65
TYR
66
A
TYR
67
n
66
TYR
67
A
PHE
68
n
67
PHE
68
A
ARG
69
n
68
ARG
69
A
VAL
70
n
69
VAL
70
A
ARG
71
n
70
ARG
71
A
GLY
72
n
71
GLY
72
A
GLY
73
n
72
GLY
73
A
ARG
74
n
73
ARG
74
A
GLU
75
n
74
GLU
75
A
LEU
76
n
75
LEU
76
A
HIS
77
n
76
HIS
77
A
PRO
78
n
77
PRO
78
A
GLY
79
n
78
GLY
79
A
SER
80
n
79
SER
80
A
LEU
81
n
80
LEU
81
A
THR
82
n
81
THR
82
A
PHE
83
n
82
PHE
83
A
GLY
84
n
83
GLY
84
A
ASP
85
n
84
ASP
85
A
ARG
86
n
85
ARG
86
A
LEU
87
n
86
LEU
87
A
THR
88
n
87
THR
88
A
VAL
89
n
88
VAL
89
A
THR
90
n
89
THR
90
A
SER
91
n
90
SER
91
A
GLY
92
n
91
GLY
92
A
CYS
93
n
92
CYS
93
A
TYR
94
n
93
TYR
94
A
ASP
95
n
94
ASP
95
A
GLN
96
n
95
GLN
96
A
GLY
97
n
96
GLY
97
A
THR
98
n
97
THR
98
A
GLU
99
n
98
GLU
99
A
SER
100
n
99
SER
100
A
VAL
101
n
100
VAL
101
A
LEU
102
n
101
LEU
102
A
THR
103
n
102
THR
103
A
LEU
104
n
103
LEU
104
A
HIS
105
n
104
HIS
105
A
ARG
106
n
105
ARG
106
A
ILE
107
n
106
ILE
107
A
ASP
108
n
107
ASP
108
A
ARG
109
n
108
ARG
109
A
ALA
110
n
109
ALA
110
A
GLY
111
n
110
GLY
111
A
SER
112
n
111
SER
112
A
ASP
113
n
112
ASP
113
A
ASP
114
n
113
ASP
114
A
ALA
115
n
114
ALA
115
A
GLN
116
n
115
GLN
116
A
ARG
117
n
116
ARG
117
A
PRO
118
n
117
PRO
118
A
LEU
119
n
118
LEU
119
A
ASP
120
n
119
ASP
120
A
LEU
121
n
120
LEU
121
A
HIS
122
n
121
HIS
122
A
GLU
123
n
122
GLU
123
A
PHE
124
n
123
PHE
124
A
TYR
125
n
124
TYR
125
A
GLU
126
n
125
GLU
126
A
ARG
127
n
126
ARG
127
A
PRO
128
n
127
PRO
128
A
ARG
129
n
128
ARG
129
A
ASP
130
n
129
ASP
130
A
GLY
131
n
130
GLY
131
A
SER
132
n
131
SER
132
A
LEU
133
n
132
LEU
133
A
TYR
134
n
133
TYR
134
A
VAL
135
n
134
VAL
135
A
GLU
136
n
135
GLU
136
A
ASN
137
n
136
ASN
137
A
PHE
138
n
137
PHE
138
A
ASN
139
n
138
ASN
139
A
ARG
140
n
139
ARG
140
A
TRP
141
n
140
TRP
141
A
VAL
142
n
141
VAL
142
A
THR
143
n
142
THR
143
A
ARG
144
n
143
ARG
144
A
SER
145
n
144
SER
145
A
ALA
146
n
145
ALA
146
A
PRO
147
n
146
PRO
147
A
GLY
148
n
147
GLY
148
A
SER
149
n
148
SER
149
A
ASN
150
n
149
ASN
150
A
GLU
151
n
150
GLU
151
A
ASP
152
n
151
ASP
152
A
LEU
153
n
152
LEU
153
A
VAL
154
n
153
VAL
154
A
LYS
155
n
154
LYS
155
A
SER
156
n
155
SER
156
A
SER
157
n
156
SER
157
A
PRO
158
n
157
PRO
158
A
PRO
159
n
158
PRO
159
A
GLY
160
n
159
GLY
160
A
PHE
161
n
160
PHE
161
A
ARG
162
n
161
ARG
162
A
ASN
163
n
162
ASN
163
A
ASP
164
n
163
ASP
164
A
GLY
165
n
164
GLY
165
A
LEU
166
n
165
LEU
166
A
PRO
167
n
166
PRO
167
A
GLN
168
n
167
GLN
168
A
LEU
169
n
168
LEU
169
A
PRO
170
n
169
PRO
170
A
ALA
171
n
170
ALA
171
A
ALA
172
n
171
ALA
172
A
TYR
173
n
172
TYR
173
A
SER
174
n
173
SER
174
A
PRO
175
n
174
PRO
175
A
ARG
176
n
175
ARG
176
A
ALA
177
n
176
ALA
177
A
VAL
178
n
177
VAL
178
A
TYR
179
n
178
TYR
179
A
ARG
180
n
179
ARG
180
A
GLU
181
n
180
GLU
181
A
ALA
182
n
181
ALA
182
A
ARG
183
n
182
ARG
183
A
THR
184
n
183
THR
184
A
ALA
185
n
184
ALA
185
A
HIS
186
n
185
HIS
186
A
THR
187
n
186
THR
187
A
PHE
188
n
187
PHE
188
A
ARG
189
n
188
ARG
189
A
ALA
190
n
189
ALA
190
A
LEU
191
n
190
LEU
191
A
ASP
192
n
191
ASP
192
A
GLU
193
n
192
GLU
193
A
PRO
194
n
193
PRO
194
A
GLY
195
n
194
GLY
195
A
PHE
196
n
195
PHE
196
A
ARG
197
n
196
ARG
197
A
LEU
198
n
197
LEU
198
A
LEU
199
n
198
LEU
199
A
PRO
200
n
199
PRO
200
A
ASP
201
n
200
ASP
201
A
THR
202
n
201
THR
202
A
VAL
203
n
202
VAL
203
A
GLU
204
n
203
GLU
204
A
VAL
205
n
204
VAL
205
A
GLU
206
n
205
GLU
206
A
HIS
207
n
206
HIS
207
A
PRO
208
n
207
PRO
208
A
VAL
209
n
208
VAL
209
A
ASP
210
n
209
ASP
210
A
ILE
211
n
210
ILE
211
A
VAL
212
n
211
VAL
212
A
ARG
213
n
212
ARG
213
A
ASP
214
n
213
ASP
214
A
VAL
215
n
214
VAL
215
A
ASN
216
n
215
ASN
216
A
GLY
217
n
216
GLY
217
A
VAL
218
n
217
VAL
218
A
GLY
219
n
218
GLY
219
A
LEU
220
n
219
LEU
220
A
LEU
221
n
220
LEU
221
A
TYR
222
n
221
TYR
222
A
PHE
223
n
222
PHE
223
A
ALA
224
n
223
ALA
224
A
SER
225
n
224
SER
225
A
TYR
226
n
225
TYR
226
A
PHE
227
n
226
PHE
227
A
SER
228
n
227
SER
228
A
MET
229
n
228
MET
229
A
VAL
230
n
229
VAL
230
A
ASP
231
n
230
ASP
231
A
LYS
232
n
231
LYS
232
A
ALA
233
n
232
ALA
233
A
ALA
234
n
233
ALA
234
A
LEU
235
n
234
LEU
235
A
ALA
236
n
235
ALA
236
A
LEU
237
n
236
LEU
237
A
TRP
238
n
237
TRP
238
A
ARG
239
n
238
ARG
239
A
ARG
240
n
239
ARG
240
A
LEU
241
n
240
LEU
241
A
GLY
242
n
241
GLY
242
A
ARG
243
n
242
ARG
243
A
SER
244
n
243
SER
244
A
ASP
245
n
244
ASP
245
A
ARG
246
n
245
ARG
246
A
ALA
247
n
246
ALA
247
A
PHE
248
n
247
PHE
248
A
LEU
249
n
248
LEU
249
A
ARG
250
n
249
ARG
250
A
ARG
251
n
250
ARG
251
A
VAL
252
n
251
VAL
252
A
VAL
253
n
252
VAL
253
A
VAL
254
n
253
VAL
254
A
ASP
255
n
254
ASP
255
A
GLN
256
n
255
GLN
256
A
GLN
257
n
256
GLN
257
A
MET
258
n
257
MET
258
A
CYS
259
n
258
CYS
259
A
TYR
260
n
259
TYR
260
A
LEU
261
n
260
LEU
261
A
GLY
262
n
261
GLY
262
A
ASN
263
n
262
ASN
263
A
ALA
264
n
263
ALA
264
A
ASP
265
n
264
ASP
265
A
LEU
266
n
265
LEU
266
A
ASP
267
n
266
ASP
267
A
SER
268
n
267
SER
268
A
VAL
269
n
268
VAL
269
A
LEU
270
n
269
LEU
270
A
THR
271
n
270
THR
271
A
LEU
272
n
271
LEU
272
A
GLY
273
n
272
GLY
273
A
ALA
274
n
273
ALA
274
A
ARG
275
n
274
ARG
275
A
VAL
276
n
275
VAL
276
A
ARG
277
n
276
ARG
277
A
VAL
278
n
277
VAL
278
A
SER
279
n
278
SER
279
A
THR
280
n
279
THR
280
A
GLU
281
n
280
GLU
281
A
THR
282
n
281
THR
282
A
PRO
283
n
282
PRO
283
A
GLY
284
n
283
GLY
284
A
GLU
285
n
284
GLU
285
A
GLU
286
n
285
GLU
286
A
LEU
287
n
286
LEU
287
A
VAL
288
n
287
VAL
288
A
ASP
289
n
288
ASP
289
A
VAL
290
n
289
VAL
290
A
VAL
291
n
290
VAL
291
A
ILE
292
n
291
ILE
292
A
SER
293
n
292
SER
293
A
ASP
294
n
293
ASP
294
A
ARG
295
n
294
ARG
295
A
ASP
296
n
295
ASP
296
A
SER
297
n
296
SER
297
A
GLY
298
n
297
GLY
298
A
ARG
299
n
298
ARG
299
A
VAL
300
n
299
VAL
300
A
ILE
301
n
300
ILE
301
A
ALA
302
n
301
ALA
302
A
VAL
303
n
302
VAL
303
A
SER
304
n
303
SER
304
A
THR
305
n
304
THR
305
A
LEU
306
n
305
LEU
306
A
HIS
307
n
306
HIS
307
A
THR
308
n
307
THR
308
A
GLN
309
n
308
GLN
309
A
n
309
310
A
n
310
311
A
n
311
312
A
n
312
313
A
n
313
314
A
n
314
315
A
n
315
316
A
n
316
317
A
n
317
318
A
n
318
319
A
author_and_software_defined_assembly
PISA
2
dimeric
6160
-96
23370
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
51.8521666667
A
N
VAL
17
A
N
VAL
16
A
O
LEU
87
A
O
LEU
86
A
N
THR
88
A
N
THR
87
A
O
ASP
108
A
O
ASP
107
A
N
THR
103
A
N
THR
102
A
O
ASN
137
A
O
ASN
136
A
O
TYR
134
A
O
TYR
133
A
N
ARG
71
A
N
ARG
70
A
N
PHE
68
A
N
PHE
67
A
O
MET
258
A
O
MET
257
A
N
ASP
255
A
N
ASP
254
A
O
HIS
307
A
O
HIS
306
A
O
SER
304
A
O
SER
303
A
N
VAL
290
A
N
VAL
289
A
O
LEU
287
A
O
LEU
286
A
N
ARG
277
A
N
ARG
276
A
O
VAL
278
A
O
VAL
277
A
N
ARG
197
A
N
ARG
196
A
O
VAL
154
A
O
VAL
153
A
N
THR
143
A
N
THR
142
A
O
TYR
134
A
O
TYR
133
A
N
ARG
71
A
N
ARG
70
A
N
PHE
68
A
N
PHE
67
A
O
MET
258
A
O
MET
257
A
N
ASP
255
A
N
ASP
254
A
O
HIS
307
A
O
HIS
306
A
O
SER
304
A
O
SER
303
A
N
VAL
290
A
N
VAL
289
A
O
LEU
287
A
O
LEU
286
A
N
ARG
277
A
N
ARG
276
A
O
LEU
270
A
O
LEU
269
A
N
HIS
207
A
N
HIS
206
1
A
HOH
572
F
HOH
1
A
N1A
COA
401
B
N1A
COA
1
1
N
1
A
C2A
COA
401
B
C2A
COA
1
1
N
1
A
N3A
COA
401
B
N3A
COA
1
1
N
1
A
C4A
COA
401
B
C4A
COA
1
1
N
1
A
C5A
COA
401
B
C5A
COA
1
1
N
1
A
C6A
COA
401
B
C6A
COA
1
1
N
1
A
N6A
COA
401
B
N6A
COA
1
1
N
1
A
N7A
COA
401
B
N7A
COA
1
1
N
1
A
C8A
COA
401
B
C8A
COA
1
1
N
1
A
N9A
COA
401
B
N9A
COA
1
1
N
1
A
C1B
COA
401
B
C1B
COA
1
1
N
1
A
C2B
COA
401
B
C2B
COA
1
1
N
1
A
O2B
COA
401
B
O2B
COA
1
1
N
1
A
C3B
COA
401
B
C3B
COA
1
1
N
1
A
O3B
COA
401
B
O3B
COA
1
1
N
1
A
P3B
COA
401
B
P3B
COA
1
1
N
1
A
O7A
COA
401
B
O7A
COA
1
1
N
1
A
O8A
COA
401
B
O8A
COA
1
1
N
1
A
O9A
COA
401
B
O9A
COA
1
1
N
1
A
C4B
COA
401
B
C4B
COA
1
1
N
1
A
O4B
COA
401
B
O4B
COA
1
1
N
1
A
C5B
COA
401
B
C5B
COA
1
1
N
1
A
SER
2
A
SER
1
1
Y
1
A
ILE
3
A
ILE
2
1
Y
1
A
THR
4
A
THR
3
1
Y
1
A
SER
5
A
SER
4
1
Y
1
A
SER
6
A
SER
5
1
Y
1
A
LEU
7
A
LEU
6
1
Y
1
A
ASP
8
A
ASP
7
1
Y
1
A
VAL
9
A
VAL
8
1
Y
1
A
ARG
10
A
ARG
9
1
Y
1
A
PRO
11
A
PRO
10
1
Y
1
A
HIS
310
A
HIS
309
1
Y
1
A
ASP
311
A
ASP
310
1
Y
1
A
ALA
312
A
ALA
311
1
Y
1
A
HIS
313
A
HIS
312
1
Y
1
A
ASP
314
A
ASP
313
1
Y
1
A
PRO
315
A
PRO
314
1
Y
1
A
LYS
316
A
LYS
315
1
Y
1
A
GLY
317
A
GLY
316
1
Y
1
A
GLU
318
A
GLU
317
1
Y
1
A
ALA
319
A
ALA
318
1
Y
1
A
A
NH2
NE2
ARG
GLN
20
33
1.80
1
A
A
OD2
O
ASP
HOH
164
592
2.15
1
A
A
OD1
O
ASP
HOH
214
544
2.17
1
A
A
O
O
HOH
HOH
542
613
2.19
1
A
A
CB
CG
ASP
ASP
214
214
0.127
0.021
1.513
1.640
N
1
A
A
NH1
OD2
ARG
ASP
20
36
1.99
1_555
12_555
1
A
ARG
117
-37.68
141.21
1
A
ARG
251
-39.37
133.10
1
A
GLU
281
-145.57
-36.35
27.185
0.00
0.00
0.00
0.00
0.00
0.00
0.937
0.904
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27477
0.22490
0.22740
1.77
29.72
1656
30964
5.1
97.92
3.366
0.106
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.142
0.143
0.80
0.80
1.40
PDB Entry 4HZN
MAXIMUM LIKELIHOOD
MASK
1.77
29.72
160
2532
37
0
2335
0.022
0.021
2421
1.980
1.969
3296
6.690
5.000
297
35.456
22.167
120
16.620
15.000
367
18.874
15.000
30
0.140
0.200
356
0.010
0.021
1888
1.249
1.500
1480
2.001
2.000
2385
3.032
3.000
941
4.644
4.500
911
0.402
0.294
1.818
125
2185
20
97.22
1.77
30
4HZP
33385
32885
-3
0.107
1
14.7
9.1
98.5
data collection
HKL-2000
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
SCALEPACK
The Structure of the Bifunctional Acetyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double Hot Dog Fold
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
The biological dimer is generated by the symmetry mate: x, x-y, -z+1/6
A
ARG
20
A
ARG
19
HELX_P
A
CYS
24
A
CYS
23
5
1
5
A
SER
28
A
SER
27
HELX_P
A
ASP
47
A
ASP
46
1
2
20
A
HIS
77
A
HIS
76
HELX_P
A
LEU
81
A
LEU
80
5
3
5
A
ASP
120
A
ASP
119
HELX_P
A
ARG
127
A
ARG
126
1
4
8
A
PRO
170
A
PRO
169
HELX_P
A
TYR
173
A
TYR
172
5
5
4
A
SER
174
A
SER
173
HELX_P
A
HIS
186
A
HIS
185
1
6
13
A
TYR
222
A
TYR
221
HELX_P
A
LEU
241
A
LEU
240
1
7
20
A
SER
244
A
SER
243
HELX_P
A
LEU
249
A
LEU
248
1
8
6
A
ARG
295
A
ARG
294
HELX_P
A
GLY
298
A
GLY
297
5
9
4
TRANSFERASE,LYASE
Structural Genomics, Protein Structure Initiative, Enzyme Discovery for Natural Product Biosynthesis, NatPro, PSI-Biology, Double Hot Dog Fold, Acyl Carrier Protein - LnmL, methylmalonyl-CoA, TRANSFERASE, LYASE
Q8GGP1_STRAZ
UNP
1
2
Q8GGP1
TITSSLDVRPEIKQAVTVRPGMCGPGSLFVGQLGDWTWETVSAQCDTDVFAARDASGNPTYLAFYYFRVRGGRELHPGSL
TFGDRLTVTSGCYDQGTESVLTLHRIDRAGSDDAQRPLDLHEFYERPRDGSLYVENFNRWVTRSAPGSNEDLVKSSPPGF
RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLLYFASYFSMVDKAALALWRRL
GRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKGEA
2
319
4HZP
2
319
Q8GGP1
A
1
1
318
1
THR
engineered mutation
SER
2
4HZP
A
Q8GGP1
UNP
2
1
1
TYR
engineered mutation
PHE
62
4HZP
A
Q8GGP1
UNP
62
61
10
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
13
A
ILE
12
A
THR
18
A
THR
17
A
ARG
86
A
ARG
85
A
ASP
95
A
ASP
94
A
SER
100
A
SER
99
A
ARG
109
A
ARG
108
A
SER
132
A
SER
131
A
THR
143
A
THR
142
A
PHE
62
A
PHE
61
A
ARG
71
A
ARG
70
A
VAL
252
A
VAL
251
A
TYR
260
A
TYR
259
A
ARG
299
A
ARG
298
A
GLN
309
A
GLN
308
A
GLU
286
A
GLU
285
A
ASP
294
A
ASP
293
A
VAL
269
A
VAL
268
A
SER
279
A
SER
278
A
PHE
196
A
PHE
195
A
LEU
198
A
LEU
197
A
VAL
154
A
VAL
153
A
LYS
155
A
LYS
154
A
SER
132
A
SER
131
A
THR
143
A
THR
142
A
PHE
62
A
PHE
61
A
ARG
71
A
ARG
70
A
VAL
252
A
VAL
251
A
TYR
260
A
TYR
259
A
ARG
299
A
ARG
298
A
GLN
309
A
GLN
308
A
GLU
286
A
GLU
285
A
ASP
294
A
ASP
293
A
VAL
269
A
VAL
268
A
SER
279
A
SER
278
A
VAL
203
A
VAL
202
A
PRO
208
A
PRO
207
BINDING SITE FOR RESIDUE COA A 401
A
COA
401
Software
13
BINDING SITE FOR RESIDUE CL A 402
A
CL
402
Software
4
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
4
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
2
A
PHE
65
A
PHE
64
13
1_555
A
TYR
66
A
TYR
65
13
1_555
A
ARG
127
A
ARG
126
13
8_665
A
LEU
153
A
LEU
152
13
1_555
A
LYS
155
A
LYS
154
13
1_555
A
LEU
221
A
LEU
220
13
1_555
A
TYR
260
A
TYR
259
13
1_555
A
LEU
261
A
LEU
260
13
1_555
A
GLY
262
A
GLY
261
13
1_555
A
ASN
263
A
ASN
262
13
1_555
A
CL
402
C
CL
13
1_555
A
HOH
539
F
HOH
13
1_555
A
HOH
617
F
HOH
13
1_555
A
ASN
216
A
ASN
215
4
1_555
A
TYR
222
A
TYR
221
4
1_555
A
PHE
223
A
PHE
222
4
1_555
A
COA
401
B
COA
4
1_555
A
ARG
140
A
ARG
139
4
1_555
A
TYR
179
A
TYR
178
4
1_555
A
ARG
180
A
ARG
179
4
1_555
A
ARG
183
A
ARG
182
4
1_555
A
ARG
69
A
ARG
68
2
1_555
A
ARG
71
A
ARG
70
2
1_555
178
P 61 2 2