0.009909 0.005721 0.000000 0.000000 0.011442 0.000000 0.000000 0.000000 0.005314 0.00000 0.00000 0.00000 Vigdorovich, V. Ramagopal, U. Bonanno, J.B. Toro, R. Nathenson, S.G. Almo, S.C. New York Structural Genomics Research Consortium (NYSGRC) Atoms-to-Animals: The Immune Function Network (IFN) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 100.920 100.920 188.180 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N C N 119 N O N 120 N N N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N C N 139 N O N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 N C N 153 N C N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 S C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N C N 235 N C N 236 N C N 237 N N N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 S C N 255 S C N 256 S C N 257 S C N 258 R C N 259 N C N 260 N O N 261 N O N 262 N O N 263 N O N 264 N O N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 R C N 299 R C N 300 R C N 301 S C N 302 R C N 303 N C N 304 N C N 305 N C N 306 N N N 307 N O N 308 N O N 309 N O N 310 N O N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N S N 383 N O N 384 N O N 385 N O N 386 N O N 387 N N N 388 S C N 389 N C N 390 N O N 391 R C N 392 N O N 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N N Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C N 460 N C N 461 N C N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N doub Y 166 N doub N 167 N sing Y 168 N sing N 169 N sing Y 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N sing Y 408 N doub N 409 N sing Y 410 N doub N 411 N sing Y 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing Y 427 N doub Y 428 N sing Y 429 N sing N 430 N sing Y 431 N doub N 432 N sing Y 433 N doub N 434 N sing Y 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing UK Structure STRUE6 2005 0969-2126 21 707 717 10.1016/j.str.2013.03.003 23583036 Structure and T cell inhibition properties of B7 family member, B7-H3. 2013 10.2210/pdb4i0k/pdb pdb_00004i0k 100 1 1 CCD 2009-11-19 ADSC QUANTUM 315 Si crystal SINGLE WAVELENGTH M x-ray 1 M x-ray 1 0.9789 1.0 X29A NSLS 0.9789 SYNCHROTRON NSLS BEAMLINE X29A 24264.998 CD276 antigen extracellular domain 1 man polymer 748.682 alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 5 nat water B7 homolog 3, B7-H3, Costimulatory molecule no no SEDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR VTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPETGHHHHHH SEDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR VTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPETGHHHHHH A NYSGRC-005729 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample B7-H3, B7h3, Cd276 10090 Mus musculus 7227 Drosophila melanogaster Schneider 2 cell line plasmid pMT-BiP-His 1 5.70 78.42 VAPOR DIFFUSION 7.5 0.1 M HEPES, pH 7.5; 20% PEG-10000, VAPOR DIFFUSION, temperature 291K 291 New York Structural Genomics Research Consortium NYSGRC PSI:Biology Atoms-to-Animals: The Immune Function Network IFN PSI:Biology atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry pdbx_validate_close_contact struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Advisory Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2012-12-05 1 1 2016-11-16 2 0 2020-07-29 2 1 2023-09-20 _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_entity_id _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession B NAG 1 n B NAG 1 B NAG 2 n B NAG 2 B BMA 3 n B BMA 3 B MAN 4 n B MAN 4 DManpb b-D-mannopyranose b-D-Manp Man DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y RCSB Y RCSB 2012-11-16 REL REL oligosaccharide DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c6-d1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O6 MAN BMA 4 3 2 O1 HO6 sing n n n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose SO4 SULFATE ION HOH water 3BIS PDB ENTRY 3BIS PDB experimental model NAG 1 3 NAG NAG 305 A SO4 1 4 SO4 SO4 306 A SO4 2 4 SO4 SO4 307 A HOH 2 5 HOH HOH 401 A HOH 12 5 HOH HOH 402 A HOH 24 5 HOH HOH 403 A HOH 25 5 HOH HOH 404 A HOH 26 5 HOH HOH 405 A n 1 34 A GLU 35 n 2 GLU 35 A ASP 36 n 3 ASP 36 A PRO 37 n 4 PRO 37 A VAL 38 n 5 VAL 38 A VAL 39 n 6 VAL 39 A ALA 40 n 7 ALA 40 A LEU 41 n 8 LEU 41 A VAL 42 n 9 VAL 42 A ASP 43 n 10 ASP 43 A THR 44 n 11 THR 44 A ASP 45 n 12 ASP 45 A ALA 46 n 13 ALA 46 A THR 47 n 14 THR 47 A LEU 48 n 15 LEU 48 A ARG 49 n 16 ARG 49 A CYS 50 n 17 CYS 50 A SER 51 n 18 SER 51 A PHE 52 n 19 PHE 52 A SER 53 n 20 SER 53 A PRO 54 n 21 PRO 54 A GLU 55 n 22 GLU 55 A PRO 56 n 23 PRO 56 A GLY 57 n 24 GLY 57 A PHE 58 n 25 PHE 58 A SER 59 n 26 SER 59 A LEU 60 n 27 LEU 60 A ALA 61 n 28 ALA 61 A GLN 62 n 29 GLN 62 A LEU 63 n 30 LEU 63 A ASN 64 n 31 ASN 64 A LEU 65 n 32 LEU 65 A ILE 66 n 33 ILE 66 A TRP 67 n 34 TRP 67 A GLN 68 n 35 GLN 68 A LEU 69 n 36 LEU 69 A THR 70 n 37 THR 70 A ASP 71 n 38 ASP 71 A THR 72 n 39 THR 72 A LYS 73 n 40 LYS 73 A GLN 74 n 41 GLN 74 A LEU 75 n 42 LEU 75 A VAL 76 n 43 VAL 76 A HIS 77 n 44 HIS 77 A SER 78 n 45 SER 78 A PHE 79 n 46 PHE 79 A THR 80 n 47 THR 80 A GLU 81 n 48 GLU 81 A GLY 82 n 49 GLY 82 A ARG 83 n 50 ARG 83 A ASP 84 n 51 ASP 84 A GLN 85 n 52 GLN 85 A GLY 86 n 53 GLY 86 A SER 87 n 54 SER 87 A ALA 88 n 55 ALA 88 A TYR 89 n 56 TYR 89 A SER 90 n 57 SER 90 A ASN 91 n 58 ASN 91 A ARG 92 n 59 ARG 92 A THR 93 n 60 THR 93 A ALA 94 n 61 ALA 94 A LEU 95 n 62 LEU 95 A PHE 96 n 63 PHE 96 A PRO 97 n 64 PRO 97 A ASP 98 n 65 ASP 98 A LEU 99 n 66 LEU 99 A LEU 100 n 67 LEU 100 A VAL 101 n 68 VAL 101 A GLN 102 n 69 GLN 102 A GLY 103 n 70 GLY 103 A ASN 104 n 71 ASN 104 A ALA 105 n 72 ALA 105 A SER 106 n 73 SER 106 A LEU 107 n 74 LEU 107 A ARG 108 n 75 ARG 108 A LEU 109 n 76 LEU 109 A GLN 110 n 77 GLN 110 A ARG 111 n 78 ARG 111 A VAL 112 n 79 VAL 112 A ARG 113 n 80 ARG 113 A VAL 114 n 81 VAL 114 A THR 115 n 82 THR 115 A ASP 116 n 83 ASP 116 A GLU 117 n 84 GLU 117 A GLY 118 n 85 GLY 118 A SER 119 n 86 SER 119 A TYR 120 n 87 TYR 120 A THR 121 n 88 THR 121 A CYS 122 n 89 CYS 122 A PHE 123 n 90 PHE 123 A VAL 124 n 91 VAL 124 A SER 125 n 92 SER 125 A ILE 126 n 93 ILE 126 A GLN 127 n 94 GLN 127 A ASP 128 n 95 ASP 128 A PHE 129 n 96 PHE 129 A ASP 130 n 97 ASP 130 A SER 131 n 98 SER 131 A ALA 132 n 99 ALA 132 A ALA 133 n 100 ALA 133 A VAL 134 n 101 VAL 134 A SER 135 n 102 SER 135 A LEU 136 n 103 LEU 136 A GLN 137 n 104 GLN 137 A VAL 138 n 105 VAL 138 A ALA 139 n 106 ALA 139 A ALA 140 n 107 ALA 140 A PRO 141 n 108 PRO 141 A TYR 142 n 109 TYR 142 A SER 143 n 110 SER 143 A LYS 144 n 111 LYS 144 A PRO 145 n 112 PRO 145 A SER 146 n 113 SER 146 A MET 147 n 114 MET 147 A THR 148 n 115 THR 148 A LEU 149 n 116 LEU 149 A GLU 150 n 117 GLU 150 A PRO 151 n 118 PRO 151 A n 119 152 A n 120 153 A n 121 154 A n 122 155 A n 123 156 A PRO 157 n 124 PRO 157 A GLY 158 n 125 GLY 158 A ASN 159 n 126 ASN 159 A MET 160 n 127 MET 160 A VAL 161 n 128 VAL 161 A THR 162 n 129 THR 162 A ILE 163 n 130 ILE 163 A THR 164 n 131 THR 164 A CYS 165 n 132 CYS 165 A SER 166 n 133 SER 166 A SER 167 n 134 SER 167 A TYR 168 n 135 TYR 168 A GLN 169 n 136 GLN 169 A GLY 170 n 137 GLY 170 A TYR 171 n 138 TYR 171 A PRO 172 n 139 PRO 172 A GLU 173 n 140 GLU 173 A ALA 174 n 141 ALA 174 A GLU 175 n 142 GLU 175 A VAL 176 n 143 VAL 176 A PHE 177 n 144 PHE 177 A TRP 178 n 145 TRP 178 A LYS 179 n 146 LYS 179 A ASP 180 n 147 ASP 180 A GLY 181 n 148 GLY 181 A GLN 182 n 149 GLN 182 A GLY 183 n 150 GLY 183 A VAL 184 n 151 VAL 184 A PRO 185 n 152 PRO 185 A LEU 186 n 153 LEU 186 A THR 187 n 154 THR 187 A GLY 188 n 155 GLY 188 A ASN 189 n 156 ASN 189 A VAL 190 n 157 VAL 190 A THR 191 n 158 THR 191 A THR 192 n 159 THR 192 A SER 193 n 160 SER 193 A GLN 194 n 161 GLN 194 A MET 195 n 162 MET 195 A ALA 196 n 163 ALA 196 A ASN 197 n 164 ASN 197 A GLU 198 n 165 GLU 198 A ARG 199 n 166 ARG 199 A GLY 200 n 167 GLY 200 A LEU 201 n 168 LEU 201 A PHE 202 n 169 PHE 202 A ASP 203 n 170 ASP 203 A VAL 204 n 171 VAL 204 A HIS 205 n 172 HIS 205 A SER 206 n 173 SER 206 A VAL 207 n 174 VAL 207 A LEU 208 n 175 LEU 208 A ARG 209 n 176 ARG 209 A VAL 210 n 177 VAL 210 A VAL 211 n 178 VAL 211 A LEU 212 n 179 LEU 212 A GLY 213 n 180 GLY 213 A ALA 214 n 181 ALA 214 A ASN 215 n 182 ASN 215 A GLY 216 n 183 GLY 216 A THR 217 n 184 THR 217 A TYR 218 n 185 TYR 218 A SER 219 n 186 SER 219 A CYS 220 n 187 CYS 220 A LEU 221 n 188 LEU 221 A VAL 222 n 189 VAL 222 A ARG 223 n 190 ARG 223 A ASN 224 n 191 ASN 224 A PRO 225 n 192 PRO 225 A VAL 226 n 193 VAL 226 A LEU 227 n 194 LEU 227 A GLN 228 n 195 GLN 228 A GLN 229 n 196 GLN 229 A ASP 230 n 197 ASP 230 A ALA 231 n 198 ALA 231 A HIS 232 n 199 HIS 232 A GLY 233 n 200 GLY 233 A SER 234 n 201 SER 234 A VAL 235 n 202 VAL 235 A THR 236 n 203 THR 236 A ILE 237 n 204 ILE 237 A THR 238 n 205 THR 238 A GLY 239 n 206 GLY 239 A n 207 240 A n 208 241 A n 209 242 A n 210 243 A n 211 244 A n 212 245 A n 213 246 A n 214 247 A n 215 248 A n 216 249 A n 217 250 A n 218 251 A n 219 252 A n 220 253 A n 221 254 A n 222 255 A author_and_software_defined_assembly PISA 2 dimeric 7580 -42 21800 A ASN 104 GLYCOSYLATION SITE A ASN 71 ASN A ASN 91 GLYCOSYLATION SITE A ASN 58 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 9_554 -x,-x+y,-z-1/3 crystal symmetry operation 0.0000000000 0.0000000000 -62.7266666667 A N ALA 46 A N ALA 13 A O LEU 109 A O LEU 76 A O ARG 108 A O ARG 75 A N ALA 94 A N ALA 61 A O ARG 83 A O ARG 50 A N THR 80 A N THR 47 A O VAL 76 A O VAL 43 A N TRP 67 A N TRP 34 A N ILE 66 A N ILE 33 A O PHE 123 A O PHE 90 A N THR 148 A N THR 115 A O THR 164 A O THR 131 A N CYS 165 A N CYS 132 A O SER 206 A O SER 173 A O VAL 207 A O VAL 174 A N THR 191 A N THR 158 A N GLU 175 A N GLU 142 A O ARG 223 A O ARG 190 A N VAL 222 A N VAL 189 A O ALA 231 A O ALA 198 1 A HOH 404 F HOH 1 A CG ASP 36 A CG ASP 3 1 Y 1 A OD1 ASP 36 A OD1 ASP 3 1 Y 1 A OD2 ASP 36 A OD2 ASP 3 1 Y 1 A CG GLU 150 A CG GLU 117 1 Y 1 A CD GLU 150 A CD GLU 117 1 Y 1 A OE1 GLU 150 A OE1 GLU 117 1 Y 1 A OE2 GLU 150 A OE2 GLU 117 1 Y 1 A SER 34 A SER 1 1 Y 1 A ASN 152 A ASN 119 1 Y 1 A LYS 153 A LYS 120 1 Y 1 A ASP 154 A ASP 121 1 Y 1 A LEU 155 A LEU 122 1 Y 1 A ARG 156 A ARG 123 1 Y 1 A GLN 240 A GLN 207 1 Y 1 A PRO 241 A PRO 208 1 Y 1 A LEU 242 A LEU 209 1 Y 1 A THR 243 A THR 210 1 Y 1 A PHE 244 A PHE 211 1 Y 1 A PRO 245 A PRO 212 1 Y 1 A PRO 246 A PRO 213 1 Y 1 A GLU 247 A GLU 214 1 Y 1 A THR 248 A THR 215 1 Y 1 A GLY 249 A GLY 216 1 Y 1 A HIS 250 A HIS 217 1 Y 1 A HIS 251 A HIS 218 1 Y 1 A HIS 252 A HIS 219 1 Y 1 A HIS 253 A HIS 220 1 Y 1 A HIS 254 A HIS 221 1 Y 1 A HIS 255 A HIS 222 1 Y 1 A B ND2 O5 ASN NAG 104 1 2.17 1 A A GLY PHE 57 58 -145.30 1 A PHE 96 -112.71 74.62 1 A GLN 169 70.30 55.05 1 A PRO 172 -78.34 -165.72 1 A ASP 180 -76.62 -168.85 72.265 -0.02 -0.02 -0.00 -0.02 -0.00 0.08 0.929 0.928 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24974 0.21548 0.21712 2.97 30.00 589 11661 4.8 99.50 1.000 0.500 11.178 0.211 0.3660 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.361 0.280 0.80 0.80 1.20 PDB ENTRY 3BIS MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.97 30.00 5 1592 74 0 1513 0.012 0.019 1638 0.002 0.020 1492 1.742 2.003 2246 0.841 3.002 3415 8.350 5.000 201 33.736 24.493 69 21.034 15.000 237 19.567 15.000 9 0.084 0.200 274 0.006 0.021 1827 0.001 0.020 362 0.402 0.289 3.046 46 817 20 100.00 2.833 87.399 4I0K 12250 0.117 1,2 18.100 13.100 99.700 0.800 2.970 3.130 1.000 0.800 1,2 13.700 100.000 0.442 3.130 3.320 1.700 0.442 1,2 13.600 100.000 0.277 3.320 3.550 2.700 0.277 1,2 13.400 100.000 0.181 3.550 3.830 4.200 0.181 1,2 13.300 99.900 0.111 3.830 4.200 6.600 0.111 1,2 13.300 99.800 0.086 4.200 4.700 7.800 0.086 1,2 12.700 99.700 0.085 4.700 5.420 7.400 0.085 1,2 11.900 99.600 0.070 5.420 6.640 9.400 0.070 1,2 12.300 99.400 0.046 6.640 9.390 12.500 0.046 1,2 13.200 99.200 0.041 9.390 48.738 14.900 0.041 1,2 11.400 97.500 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2011/05/18 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.20 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection CBASS data reduction MOSFLM phasing BALBES Crystal structure of murine B7-H3 extracellular domain 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N The second part of the biological assembly is generated by the two fold axis: -x, -x+y, -z-1/3 A LEU 99 A LEU 66 HELX_P A GLY 103 A GLY 70 5 1 5 A ARG 113 A ARG 80 HELX_P A GLU 117 A GLU 84 5 2 5 disulf 2.093 A CYS 50 A SG CYS 17 1_555 A CYS 122 A SG CYS 89 1_555 disulf 2.012 A CYS 165 A SG CYS 132 1_555 A CYS 220 A SG CYS 187 1_555 covale 1.466 one N-Glycosylation A ASN 91 A ND2 ASN 58 1_555 A NAG 305 C C1 NAG 1_555 covale 1.415 one N-Glycosylation A ASN 104 A ND2 ASN 71 1_555 B NAG 1 B C1 NAG 1_555 covale 1.424 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.444 both B NAG 2 B O4 NAG 1_555 B BMA 3 B C1 BMA 1_555 covale 1.478 both B BMA 3 B O6 BMA 1_555 B MAN 4 B C1 MAN 1_555 IMMUNE SYSTEM IMMUNOGLOBULIN DOMAIN, GLYCOPROTEIN, IMMUNITY, ADAPTIVE IMMUNITY, Structural Genomics, Protein Structure Initiative, immunoglobulin variable like domain, immunoglobulin constant like domain, cell surface, PSI-Biology, IMMUNE SYSTEM, New York Structural Genomics Research Consortium, NYSGRC, Atoms-to-Animals: The Immune Function Network, IFN A TYR 171 A TYR 138 1 A PRO 172 A PRO 139 -4.89 CD276_MOUSE UNP 1 34 Q8VE98 SEDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR VTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS QMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPE 34 247 4I0K 34 247 Q8VE98 A 1 1 214 1 expression tag THR 248 4I0K A Q8VE98 UNP 215 1 expression tag GLY 249 4I0K A Q8VE98 UNP 216 1 expression tag HIS 250 4I0K A Q8VE98 UNP 217 1 expression tag HIS 251 4I0K A Q8VE98 UNP 218 1 expression tag HIS 252 4I0K A Q8VE98 UNP 219 1 expression tag HIS 253 4I0K A Q8VE98 UNP 220 1 expression tag HIS 254 4I0K A Q8VE98 UNP 221 1 expression tag HIS 255 4I0K A Q8VE98 UNP 222 3 4 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 46 A ALA 13 A LEU 48 A LEU 15 A LEU 107 A LEU 74 A LEU 109 A LEU 76 A THR 93 A THR 60 A ALA 94 A ALA 61 A ARG 83 A ARG 50 A SER 87 A SER 54 A LEU 75 A LEU 42 A THR 80 A THR 47 A LEU 63 A LEU 30 A LEU 69 A LEU 36 A TYR 120 A TYR 87 A ILE 126 A ILE 93 A SER 146 A SER 113 A THR 148 A THR 115 A MET 160 A MET 127 A GLY 170 A GLY 137 A PHE 202 A PHE 169 A VAL 211 A VAL 178 A ASN 189 A ASN 156 A ALA 196 A ALA 163 A GLU 175 A GLU 142 A LYS 179 A LYS 146 A THR 217 A THR 184 A ASN 224 A ASN 191 A GLN 229 A GLN 196 A THR 236 A THR 203 178 P 61 2 2