18.10 -2.348 -7.577 -11.289 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 18.87 -3.785 -7.473 -10.978 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 16.81 -4.294 -8.706 -10.249 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 14.95 -4.199 -9.886 -11.107 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 16.45 -3.560 -9.099 -8.994 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 17.65 -4.092 -8.339 -7.853 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 15.90 -3.962 -10.573 -8.895 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 14.66 -3.780 -11.002 -10.339 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 14.19 -2.424 -11.392 -10.768 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 14.37 -1.558 -10.606 -11.500 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 14.55 -0.368 -11.269 -11.637 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 13.59 -0.526 -12.484 -10.988 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 14.02 0.357 -13.581 -10.828 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 14.94 1.480 -13.683 -11.332 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 14.11 -0.209 -14.598 -10.081 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 15.12 -1.421 -14.576 -9.564 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 17.00 -1.768 -15.662 -8.850 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 15.39 -2.320 -13.565 -9.693 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 13.98 -1.781 -12.557 -10.406 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 18.56 -3.143 -7.909 -6.645 A P 2ST 2 HETATM A P 2ST 1 2 1.00 1 P 20.02 -4.047 -7.003 -5.751 A OP1 2ST 2 HETATM A OP1 2ST 1 2 1.00 1 O 19.55 -1.831 -7.414 -7.190 A OP2 2ST 2 HETATM A OP2 2ST 1 2 1.00 1 O 17.54 -2.825 -9.337 -5.865 A O5' 2ST 2 HETATM A O5' 2ST 1 2 1.00 1 O 13.91 -0.754 -12.608 -6.337 A N1 2ST 2 HETATM A N1 2ST 1 2 1.00 1 N 16.57 -0.674 -11.418 -6.945 A C6 2ST 2 HETATM A C6 2ST 1 2 1.00 1 C 14.34 0.208 -13.601 -6.472 A C2 2ST 2 HETATM A C2 2ST 1 2 1.00 1 C 16.14 0.112 -14.660 -5.810 A O2 2ST 2 HETATM A O2 2ST 1 2 1.00 1 O 14.52 1.256 -13.313 -7.226 A N3 2ST 2 HETATM A N3 2ST 1 2 1.00 1 N 13.84 1.408 -12.147 -7.907 A C4 2ST 2 HETATM A C4 2ST 1 2 1.00 1 C 14.86 2.402 -12.029 -8.618 A O4 2ST 2 HETATM A O4 2ST 1 2 1.00 1 O 16.07 0.379 -11.107 -7.744 A C5 2ST 2 HETATM A C5 2ST 1 2 1.00 1 C 17.05 0.566 -9.808 -8.451 A C5A 2ST 2 HETATM A C5A 2ST 1 2 1.00 1 C 16.96 -1.658 -12.749 -3.968 A C2' 2ST 2 HETATM A C2' 2ST 1 2 1.00 1 C 18.99 -3.863 -9.969 -5.206 A C5' 2ST 2 HETATM A C5' 2ST 1 2 1.00 1 C 18.04 -3.417 -11.324 -4.678 A C4' 2ST 2 HETATM A C4' 2ST 1 2 1.00 1 C 16.61 -3.019 -12.113 -5.824 A O4' 2ST 2 HETATM A O4' 2ST 1 2 1.00 1 O 15.91 -1.909 -12.962 -5.484 A C1' 2ST 2 HETATM A C1' 2ST 1 2 1.00 1 C 17.41 -2.158 -11.311 -3.884 A C3' 2ST 2 HETATM A C3' 2ST 1 2 1.00 1 C 22.72 -2.753 -13.951 -2.813 A SE 2ST 2 HETATM A SE 2ST 1 2 0.80 1 SE 19.28 -1.614 -15.553 -3.155 A CA' 2ST 2 HETATM A CA' 2ST 1 2 0.80 1 C 22.36 -2.469 -10.904 -2.502 A O3' 2ST 2 HETATM A O3' 2ST 1 2 1.00 1 O 28.37 -1.435 -10.096 -1.543 A P DG 3 ATOM A P DG 1 3 1.00 1 P 36.95 -1.976 -9.718 -0.244 A OP1 DG 3 ATOM A OP1 DG 1 3 1.00 1 O 31.36 -0.775 -9.074 -2.259 A OP2 DG 3 ATOM A OP2 DG 1 3 1.00 1 O 29.59 -0.079 -11.033 -1.410 A O5' DG 3 ATOM A O5' DG 1 3 1.00 1 O 28.55 -0.028 -11.989 -0.545 A C5' DG 3 ATOM A C5' DG 1 3 1.00 1 C 23.83 1.080 -12.983 -0.869 A C4' DG 3 ATOM A C4' DG 1 3 1.00 1 C 19.59 0.991 -13.468 -2.265 A O4' DG 3 ATOM A O4' DG 1 3 1.00 1 O 20.03 2.568 -12.653 -0.745 A C3' DG 3 ATOM A C3' DG 1 3 1.00 1 C 19.30 2.942 -12.556 0.735 A O3' DG 3 ATOM A O3' DG 1 3 1.00 1 O 17.86 3.128 -13.921 -1.410 A C2' DG 3 ATOM A C2' DG 1 3 1.00 1 C 19.26 2.243 -14.032 -2.660 A C1' DG 3 ATOM A C1' DG 1 3 1.00 1 C 17.78 2.809 -13.212 -3.718 A N9 DG 3 ATOM A N9 DG 1 3 1.00 1 N 16.82 2.462 -11.973 -4.191 A C8 DG 3 ATOM A C8 DG 1 3 1.00 1 C 17.70 3.214 -11.578 -5.202 A N7 DG 3 ATOM A N7 DG 1 3 1.00 1 N 14.59 4.171 -12.625 -5.357 A C5 DG 3 ATOM A C5 DG 1 3 1.00 1 C 12.95 5.242 -12.782 -6.298 A C6 DG 3 ATOM A C6 DG 1 3 1.00 1 C 15.11 5.590 -11.976 -7.116 A O6 DG 3 ATOM A O6 DG 1 3 1.00 1 O 14.10 5.911 -13.998 -6.096 A N1 DG 3 ATOM A N1 DG 1 3 1.00 1 N 13.39 5.603 -14.908 -5.184 A C2 DG 3 ATOM A C2 DG 1 3 1.00 1 C 15.25 6.369 -16.045 -5.177 A N2 DG 3 ATOM A N2 DG 1 3 1.00 1 N 15.07 4.580 -14.784 -4.334 A N3 DG 3 ATOM A N3 DG 1 3 1.00 1 N 15.46 3.904 -13.620 -4.511 A C4 DG 3 ATOM A C4 DG 1 3 1.00 1 C 19.82 4.236 -11.778 1.151 A P DG 4 ATOM A P DG 1 4 1.00 1 P 22.33 4.192 -11.829 2.679 A OP1 DG 4 ATOM A OP1 DG 1 4 1.00 1 O 22.01 4.407 -10.530 0.447 A OP2 DG 4 ATOM A OP2 DG 1 4 1.00 1 O 19.09 5.439 -12.750 0.607 A O5' DG 4 ATOM A O5' DG 1 4 1.00 1 O 18.52 5.587 -14.001 1.106 A C5' DG 4 ATOM A C5' DG 1 4 1.00 1 C 19.72 6.727 -14.793 0.402 A C4' DG 4 ATOM A C4' DG 1 4 1.00 1 C 17.10 6.393 -14.857 -1.055 A O4' DG 4 ATOM A O4' DG 1 4 1.00 1 O 18.86 8.005 -14.064 0.360 A C3' DG 4 ATOM A C3' DG 1 4 1.00 1 C 20.17 8.665 -14.476 1.571 A O3' DG 4 ATOM A O3' DG 1 4 1.00 1 O 18.46 8.771 -14.687 -0.800 A C2' DG 4 ATOM A C2' DG 1 4 1.00 1 C 16.17 7.645 -14.766 -1.822 A C1' DG 4 ATOM A C1' DG 1 4 1.00 1 C 15.13 7.523 -13.556 -2.615 A N9 DG 4 ATOM A N9 DG 1 4 1.00 1 N 15.53 6.695 -12.498 -2.444 A C8 DG 4 ATOM A C8 DG 1 4 1.00 1 C 15.06 6.801 -11.524 -3.307 A N7 DG 4 ATOM A N7 DG 1 4 1.00 1 N 15.12 7.843 -11.982 -4.128 A C5 DG 4 ATOM A C5 DG 1 4 1.00 1 C 14.69 8.432 -11.419 -5.324 A C6 DG 4 ATOM A C6 DG 1 4 1.00 1 C 15.65 8.140 -10.387 -5.904 A O6 DG 4 ATOM A O6 DG 1 4 1.00 1 O 14.13 9.402 -12.266 -5.828 A N1 DG 4 ATOM A N1 DG 1 4 1.00 1 N 12.61 9.810 -13.445 -5.278 A C2 DG 4 ATOM A C2 DG 1 4 1.00 1 C 13.71 10.785 -14.123 -5.861 A N2 DG 4 ATOM A N2 DG 1 4 1.00 1 N 14.33 9.219 -14.002 -4.205 A N3 DG 4 ATOM A N3 DG 1 4 1.00 1 N 13.89 8.247 -13.233 -3.728 A C4 DG 4 ATOM A C4 DG 1 4 1.00 1 C 22.76 9.469 -13.519 2.511 A P DC 5 ATOM A P DC 1 5 1.00 1 P 28.93 9.433 -14.216 3.853 A OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 20.83 9.300 -12.241 2.228 A OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 26.52 10.943 -14.054 2.137 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 19.56 11.927 -13.310 1.813 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 18.70 12.708 -13.969 0.701 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 17.32 11.864 -14.127 -0.476 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 16.34 13.803 -13.034 0.287 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 17.38 15.035 -13.323 1.052 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 15.96 13.958 -13.281 -1.189 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 16.54 12.509 -13.526 -1.629 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 15.10 11.813 -12.302 -2.051 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 13.12 12.105 -11.733 -3.299 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 14.49 12.959 -12.243 -3.937 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 13.72 11.459 -10.651 -3.695 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 12.84 10.508 -10.116 -2.971 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 15.20 9.882 -9.062 -3.435 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 14.78 10.152 -10.641 -1.668 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 15.30 10.832 -11.711 -1.258 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 17.91 16.017 -12.246 1.483 A P DC 6 ATOM A P DC 1 6 1.00 1 P 21.37 17.068 -12.937 2.281 A OP1 DC 6 ATOM A OP1 DC 1 6 1.00 1 O 17.71 15.325 -11.210 2.029 A OP2 DC 6 ATOM A OP2 DC 1 6 1.00 1 O 16.54 16.717 -11.769 0.090 A O5' DC 6 ATOM A O5' DC 1 6 1.00 1 O 15.59 17.582 -12.589 -0.508 A C5' DC 6 ATOM A C5' DC 1 6 1.00 1 C 15.58 17.979 -11.894 -1.795 A C4' DC 6 ATOM A C4' DC 1 6 1.00 1 C 16.11 16.877 -11.762 -2.745 A O4' DC 6 ATOM A O4' DC 1 6 1.00 1 O 15.35 18.478 -10.467 -1.694 A C3' DC 6 ATOM A C3' DC 1 6 1.00 1 C 17.46 19.852 -10.470 -1.293 A O3' DC 6 ATOM A O3' DC 1 6 1.00 1 O 15.75 18.394 -9.974 -3.161 A C2' DC 6 ATOM A C2' DC 1 6 1.00 1 C 14.96 17.014 -10.566 -3.556 A C1' DC 6 ATOM A C1' DC 1 6 1.00 1 C 12.35 15.868 -9.691 -3.242 A N1 DC 6 ATOM A N1 DC 1 6 1.00 1 N 13.68 15.562 -8.714 -4.188 A C2 DC 6 ATOM A C2 DC 1 6 1.00 1 C 14.74 16.333 -8.572 -5.134 A O2 DC 6 ATOM A O2 DC 1 6 1.00 1 O 12.39 14.474 -7.960 -4.017 A N3 DC 6 ATOM A N3 DC 1 6 1.00 1 N 13.75 13.693 -8.112 -2.944 A C4 DC 6 ATOM A C4 DC 1 6 1.00 1 C 15.62 12.617 -7.354 -2.811 A N4 DC 6 ATOM A N4 DC 1 6 1.00 1 N 13.97 14.034 -9.121 -1.953 A C5 DC 6 ATOM A C5 DC 1 6 1.00 1 C 13.16 15.097 -9.868 -2.143 A C6 DC 6 ATOM A C6 DC 1 6 1.00 1 C 17.15 20.439 -9.204 -0.493 A P DA 7 ATOM A P DA 1 7 1.00 1 P 19.50 21.777 -9.679 0.056 A OP1 DA 7 ATOM A OP1 DA 1 7 1.00 1 O 16.95 19.466 -8.633 0.393 A OP2 DA 7 ATOM A OP2 DA 1 7 1.00 1 O 15.18 20.627 -8.138 -1.648 A O5' DA 7 ATOM A O5' DA 1 7 1.00 1 O 16.24 21.552 -8.405 -2.712 A C5' DA 7 ATOM A C5' DA 1 7 1.00 1 C 15.95 21.450 -7.234 -3.720 A C4' DA 7 ATOM A C4' DA 1 7 1.00 1 C 14.91 20.127 -7.203 -4.322 A O4' DA 7 ATOM A O4' DA 1 7 1.00 1 O 15.17 21.576 -5.823 -3.114 A C3' DA 7 ATOM A C3' DA 1 7 1.00 1 C 17.18 23.020 -5.528 -3.002 A O3' DA 7 ATOM A O3' DA 1 7 1.00 1 O 14.11 20.902 -4.936 -4.098 A C2' DA 7 ATOM A C2' DA 1 7 1.00 1 C 14.12 19.705 -5.840 -4.486 A C1' DA 7 ATOM A C1' DA 1 7 1.00 1 C 13.02 18.468 -5.667 -3.751 A N9 DA 7 ATOM A N9 DA 1 7 1.00 1 N 13.11 17.968 -6.345 -2.715 A C8 DA 7 ATOM A C8 DA 1 7 1.00 1 C 12.12 16.767 -5.975 -2.339 A N7 DA 7 ATOM A N7 DA 1 7 1.00 1 N 12.68 16.455 -4.959 -3.253 A C5 DA 7 ATOM A C5 DA 1 7 1.00 1 C 13.17 15.304 -4.135 -3.422 A C6 DA 7 ATOM A C6 DA 1 7 1.00 1 C 13.03 14.201 -4.274 -2.644 A N6 DA 7 ATOM A N6 DA 1 7 1.00 1 N 13.87 15.372 -3.239 -4.411 A N1 DA 7 ATOM A N1 DA 1 7 1.00 1 N 12.30 16.471 -3.130 -5.154 A C2 DA 7 ATOM A C2 DA 1 7 1.00 1 C 12.92 17.542 -3.853 -5.088 A N3 DA 7 ATOM A N3 DA 1 7 1.00 1 N 12.38 17.490 -4.800 -4.152 A C4 DA 7 ATOM A C4 DA 1 7 1.00 1 C 18.01 23.540 -4.495 -1.912 A P DC 8 ATOM A P DC 1 8 1.00 1 P 18.30 25.037 -4.500 -2.119 A OP1 DC 8 ATOM A OP1 DC 1 8 1.00 1 O 22.28 22.991 -4.820 -0.579 A OP2 DC 8 ATOM A OP2 DC 1 8 1.00 1 O 16.81 22.979 -3.140 -2.238 A O5' DC 8 ATOM A O5' DC 1 8 1.00 1 O 16.49 23.381 -2.549 -3.435 A C5' DC 8 ATOM A C5' DC 1 8 1.00 1 C 17.71 22.729 -1.180 -3.737 A C4' DC 8 ATOM A C4' DC 1 8 1.00 1 C 18.13 21.276 -1.436 -3.850 A O4' DC 8 ATOM A O4' DC 1 8 1.00 1 O 19.39 22.971 -0.238 -2.532 A C3' DC 8 ATOM A C3' DC 1 8 1.00 1 C 24.39 23.168 0.969 -3.129 A O3' DC 8 ATOM A O3' DC 1 8 1.00 1 O 20.62 21.612 -0.254 -1.787 A C2' DC 8 ATOM A C2' DC 1 8 1.00 1 C 16.97 20.566 -0.604 -2.880 A C1' DC 8 ATOM A C1' DC 1 8 1.00 1 C 13.86 19.432 -1.358 -2.242 A N1 DC 8 ATOM A N1 DC 1 8 1.00 1 N 14.04 18.131 -0.838 -2.628 A C2 DC 8 ATOM A C2 DC 1 8 1.00 1 C 17.10 17.923 0.124 -3.420 A O2 DC 8 ATOM A O2 DC 1 8 1.00 1 O 12.40 17.114 -1.435 -1.925 A N3 DC 8 ATOM A N3 DC 1 8 1.00 1 N 3.99 17.309 -2.390 -1.152 A C4 DC 8 ATOM A C4 DC 1 8 1.00 1 C 13.44 16.265 -2.832 -0.558 A N4 DC 8 ATOM A N4 DC 1 8 1.00 1 N 10.66 18.553 -2.914 -1.016 A C5 DC 8 ATOM A C5 DC 1 8 1.00 1 C 5.25 19.651 -2.360 -1.401 A C6 DC 8 ATOM A C6 DC 1 8 1.00 1 C 32.01 1.541 -10.136 -12.606 A PT PT 101 HETATM B PT PT 2 0.25 1 PT 31.85 5.814 -9.458 -3.218 A PT PT 102 HETATM C PT PT 2 0.25 1 PT 28.29 3.473 -9.073 -6.018 A O HOH 201 HETATM D O HOH 3 1.00 1 O 23.76 -1.119 -6.188 -9.414 A O HOH 202 HETATM D O HOH 3 1.00 1 O 24.95 -5.013 -4.651 -6.791 A O HOH 203 HETATM D O HOH 3 1.00 1 O 17.14 14.722 -14.250 -4.681 A O HOH 204 HETATM D O HOH 3 1.00 1 O 20.39 26.107 -4.460 -4.538 A O HOH 205 HETATM D O HOH 3 1.00 1 O 21.84 16.851 -15.284 -3.334 A O HOH 206 HETATM D O HOH 3 1.00 1 O 33.82 0.419 -7.520 -5.525 A O HOH 207 HETATM D O HOH 3 1.00 1 O 30.78 18.113 -15.745 1.184 A O HOH 208 HETATM D O HOH 3 1.00 1 O 20.75 19.901 -2.494 -6.268 A O HOH 209 HETATM D O HOH 3 1.00 1 O 24.93 -0.236 -17.390 -5.897 A O HOH 210 HETATM D O HOH 3 1.00 1 O 25.02 4.258 -16.867 -2.538 A O HOH 211 HETATM D O HOH 3 1.00 1 O 25.56 19.210 -14.209 -4.104 A O HOH 212 HETATM D O HOH 3 1.00 1 O 27.25 19.564 3.112 -2.335 A O HOH 213 HETATM D O HOH 3 1.00 1 O 25.57 11.070 -7.373 -0.356 A O HOH 214 HETATM D O HOH 3 1.00 1 O 24.56 15.379 -6.553 -0.004 A O HOH 215 HETATM D O HOH 3 1.00 1 O 29.85 13.320 -5.535 -0.032 A O HOH 216 HETATM D O HOH 3 1.00 1 O 26.13 19.203 -5.964 0.893 A O HOH 217 HETATM D O HOH 3 1.00 1 O 25.85 21.155 -4.481 1.088 A O HOH 218 HETATM D O HOH 3 1.00 1 O 35.55 -3.623 -3.696 -10.689 A O HOH 219 HETATM D O HOH 3 1.00 1 O 32.59 -3.765 -16.680 -5.811 A O HOH 220 HETATM D O HOH 3 1.00 1 O 36.06 14.490 -16.508 3.048 A O HOH 221 HETATM D O HOH 3 1.00 1 O 0.023603 0.000000 0.000000 0.000000 0.023603 0.000000 0.000000 0.000000 0.041570 0.00000 0.00000 0.00000 Zhang, W. Coronado, G. Huang, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.368 42.368 24.056 C11 H17 N2 O8 P Se 415.195 n 5-METHYL-2'-SE-METHYL-2'-SELENOURIDINE 5'-(DIHYDROGEN PHOSPHATE) DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Pt 2 195.078 PLATINUM (II) ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N O N 13 N C N 14 N C N 15 R C N 16 N C N 17 R C N 18 N O N 19 R C N 20 R C N 21 N SE N 22 N C N 23 N O N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N O N 42 N P N 43 N O N 44 N O N 45 N O N 46 N C N 47 R C N 48 N O N 49 S C N 50 N O N 51 N C N 52 R C Y 53 N N Y 54 N C Y 55 N N Y 56 N C Y 57 N C N 58 N N Y 59 N N Y 60 N C Y 61 N N Y 62 N C N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N O N 78 N P N 79 N O N 80 N O N 81 N O N 82 N C N 83 R C N 84 N O N 85 S C N 86 N O N 87 N C N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N H N 150 N H N 151 N PT N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing Y 65 N sing Y 66 N sing Y 67 N doub N 68 N sing Y 69 N sing Y 70 N sing Y 71 N doub N 72 N sing Y 73 N doub N 74 N sing N 75 N sing Y 76 N sing Y 77 N doub N 78 N sing Y 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing Y 138 N sing Y 139 N sing Y 140 N doub N 141 N sing Y 142 N sing N 143 N sing Y 144 N doub N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing TO BE PUBLISHED 0353 dna octamer d(GTseGTACAC) partially crosslinked with two platinums 10.2210/pdb4i1g/pdb pdb_00004i1g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 200 1 CCD 2012-09-27 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 0.97 1.0 12.3.1 ALS 0.97 SYNCHROTRON ALS BEAMLINE 12.3.1 DNA Octamer d(GTseGTACAC) 2520.592 DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3') 1 syn polymer 195.078 PLATINUM (II) ION 2 syn non-polymer 18.015 water 21 nat water no yes (DG)(2ST)(DG)(DG)(DC)(DC)(DA)(DC) GTGGCCAC A polydeoxyribonucleotide n n n n n n n n 1 1.97 42.56 VAPOR DIFFUSION, HANGING DROP 6.0 10% MPD, 40 mM Sodium codylate trihydrate, 12 mM Spermine tetrahydrochloride, 80 mM Strontium chloride , pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 -23.734 1 19 A 1 A 8 -1.086 A_DG1:DC8_A 1 -9.429 -0.257 -0.456 -0.007 -8.686 1 20 A 2 A 7 0.047 A_2ST2:DA7_A 2 -10.785 -0.075 0.144 -0.060 -5.325 1 19 A 3 A 6 -2.138 A_DG3:DC6_A 3 -10.360 -0.184 0.046 -0.205 -6.908 1 19 A 4 A 5 -0.011 A_DG4:DC5_A 4 -15.356 -0.121 0.078 -0.120 6.907 1 19 A 5 A 4 -0.011 A_DC5:DG4_A 5 -15.356 0.121 0.078 -0.120 5.325 1 19 A 6 A 3 -2.138 A_DC6:DG3_A 6 -10.360 0.184 0.046 -0.205 8.686 1 20 A 7 A 2 0.047 A_DA7:2ST2_A 7 -10.785 0.075 0.144 -0.060 23.734 1 19 A 8 A 1 -1.086 A_DC8:DG1_A 8 -9.429 0.257 -0.456 -0.007 2.578 32.378 A A 1 2 19.110 A A 8 7 3.055 10.458 0.076 -0.951 AA_DG12ST2:DA7DC8_AA 1 -3.125 5.710 30.529 -3.344 -0.625 2.486 29.831 A A 2 3 20.416 A A 7 6 3.124 10.289 0.611 -1.465 AA_2ST2DG3:DC6DA7_AA 2 2.646 -5.250 27.916 -4.747 -0.698 3.027 35.984 A A 3 4 8.887 A A 6 5 3.281 5.467 0.418 -1.622 AA_DG3DG4:DC5DC6_AA 3 2.332 -3.792 35.506 -3.382 -0.355 2.784 29.306 A A 4 5 10.423 A A 5 4 2.986 5.246 0.000 -0.886 AA_DG4DC5:DG4DC5_AA 4 0.000 0.000 28.842 -2.759 0.000 3.027 35.984 A A 5 6 8.887 A A 4 3 3.281 5.467 -0.418 -1.622 AA_DC5DC6:DG3DG4_AA 5 -2.332 3.792 35.506 -3.382 0.355 2.486 29.831 A A 6 7 20.416 A A 3 2 3.124 10.289 -0.611 -1.465 AA_DC6DA7:2ST2DG3_AA 6 -2.646 5.250 27.916 -4.747 0.698 2.578 32.378 A A 7 8 19.110 A A 2 1 3.055 10.458 -0.076 -0.951 AA_DA7DC8:DG12ST2_AA 7 3.125 -5.710 30.529 -3.344 0.625 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2012-12-05 1 1 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-11-20 REL REL PT PLATINUM (II) ION HOH water 32630 synthetic synthetic construct sample 1DNS PDB experimental model PT 1 2 PT PT 101 A PT 2 2 PT PT 102 A HOH 1 3 HOH HOH 201 A HOH 3 3 HOH HOH 202 A HOH 4 3 HOH HOH 203 A HOH 5 3 HOH HOH 204 A HOH 6 3 HOH HOH 205 A HOH 7 3 HOH HOH 206 A HOH 8 3 HOH HOH 207 A HOH 9 3 HOH HOH 208 A HOH 10 3 HOH HOH 209 A HOH 13 3 HOH HOH 210 A HOH 14 3 HOH HOH 211 A HOH 18 3 HOH HOH 212 A HOH 32 3 HOH HOH 213 A HOH 35 3 HOH HOH 214 A HOH 42 3 HOH HOH 215 A HOH 43 3 HOH HOH 216 A HOH 45 3 HOH HOH 217 A HOH 46 3 HOH HOH 218 A HOH 49 3 HOH HOH 219 A HOH 71 3 HOH HOH 220 A HOH 73 3 HOH HOH 221 A DG 1 n 1 DG 1 A 2ST 2 n 2 2ST 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DC 6 n 6 DC 6 A DA 7 n 7 DA 7 A DC 8 n 8 DC 8 A author_and_software_defined_assembly PISA 2 dimeric 2450 -61 2880 A 2ST 2 A 2ST 2 DT 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_554 -y,-x,-z-1/2 crystal symmetry operation 0.0000000000 0.0000000000 -12.0280000000 1 A DC 8 0.067 SIDE CHAIN 1 -4.27 0.50 113.10 108.83 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 2.74 0.40 106.40 109.14 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 -11.82 0.90 105.70 93.88 A A A O5' P OP2 DG DG DG 3 3 3 N 1 -2.63 0.40 104.50 101.87 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 7.65 1.20 115.70 123.35 A A A C5' C4' C3' DG DG DG 3 3 3 N 1 -3.71 0.40 104.50 100.79 A A A O4' C4' C3' DG DG DG 4 4 4 N 1 3.62 0.50 113.10 116.72 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 9.70 1.50 119.60 129.30 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 -11.42 0.90 105.70 94.28 A A A O5' P OP1 DC DC DC 5 5 5 N 1 2.95 0.30 108.30 111.25 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 -2.57 0.40 104.50 101.93 A A A O4' C4' C3' DC DC DC 6 6 6 N 1 -2.62 0.40 121.90 119.28 A A A N3 C4 C5 DC DC DC 6 6 6 N 1 3.02 0.50 110.60 113.62 A A A C2 N3 C4 DA DA DA 7 7 7 N 1 3.70 0.60 118.60 122.30 A A A N1 C6 N6 DA DA DA 7 7 7 N 1 2.95 0.30 108.30 111.25 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 5.61 0.40 120.30 125.91 A A A C6 N1 C2 DC DC DC 8 8 8 N 1 -7.39 0.70 119.20 111.81 A A A N1 C2 N3 DC DC DC 8 8 8 N 1 8.42 0.50 117.40 125.82 A A A C4 C5 C6 DC DC DC 8 8 8 N 1 -9.07 0.50 121.00 111.93 A A A C5 C6 N1 DC DC DC 8 8 8 N 1 7.00 0.60 118.90 125.90 A A A N1 C2 O2 DC DC DC 8 8 8 N 1 4.41 0.70 120.20 124.61 A A A C5 C4 N4 DC DC DC 8 8 8 N 1 A A N1 C2 DG DG 1 1 -0.055 0.008 1.373 1.318 N 1 A A N7 C8 DG DG 1 1 0.064 0.006 1.305 1.369 N 1 A A P O5' DG DG 3 3 0.061 0.010 1.593 1.654 N 1 A A O3' C3' DG DG 3 3 0.095 0.013 1.435 1.530 N 1 A A N1 C2 DG DG 3 3 -0.048 0.008 1.373 1.325 N 1 A A C4 C5 DG DG 3 3 -0.046 0.007 1.379 1.333 N 1 A A C5 N7 DG DG 3 3 0.039 0.006 1.388 1.427 N 1 A A C5' C4' DG DG 4 4 0.044 0.007 1.512 1.556 N 1 A A P OP2 DC DC 5 5 -0.165 0.017 1.485 1.320 N 1 A A C2 O2 DC DC 5 5 -0.058 0.009 1.240 1.182 N 1 A A O3' P DC DC 5 6 -0.087 0.012 1.607 1.520 Y 1 A A P OP2 DC DC 6 6 -0.125 0.017 1.485 1.360 N 1 A A P O5' DC DC 8 8 -0.091 0.010 1.593 1.502 N 1 A A O3' C3' DC DC 8 8 -0.058 0.006 1.419 1.361 N 1 A A C4 N4 DC DC 8 8 -0.055 0.009 1.335 1.280 N 1 A A N1 C6 DC DC 8 8 -0.041 0.006 1.367 1.326 N 1 A A N3 C4 DC DC 8 8 -0.091 0.007 1.335 1.244 N 1 A A C4 C5 DC DC 8 8 -0.068 0.008 1.425 1.357 N 1 A A C5 C6 DC DC 8 8 -0.050 0.008 1.339 1.289 N 18.517 0.01 0.00 0.00 0.01 0.00 -0.01 0.957 0.948 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21729 0.20908 0.20947 0.20947 1.25 15.90 279 6256 5900 4.5 96.34 0.948 0.039 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.052 0.051 0.80 0.80 1.40 1DNS MAXIMUM LIKELIHOOD MASK 1.25 15.90 21 186 2 163 0 0.040 0.021 180 3.373 3.000 271 0.487 0.200 32 0.034 0.020 84 2.297 3.000 180 2.753 4.500 271 0.536 0.363 1.283 17 373 20 86.67 1.25 15.90 4I1G 6256 5900 0.094 0.090 1 25.6 11.7 94.3 data collection HKL-2000 phasing PHASES refinement REFMAC 5.5.0110 data reduction HKL-2000 data scaling HKL-2000 dna octamer d(GTseGTACAC) partially crosslinked with two platinums 1 N N 2 N N 2 N N 3 N N covale 1.595 both A DG 1 A O3' DG 1 1_555 A 2ST 2 A P 2ST 2 1_555 covale 1.625 both A 2ST 2 A O3' 2ST 2 1_555 A DG 3 A P DG 3 1_555 metalc 2.422 A DG 1 A N7 DG 1 1_555 A PT 101 B PT PT 1_555 metalc 2.291 A DG 4 A N7 DG 4 1_555 A PT 102 C PT PT 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 8_554 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 8_554 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 8_554 hydrog WATSON-CRICK A 2ST 2 A N3 2ST 2 1_555 A DA 7 A N1 DA 7 8_554 hydrog WATSON-CRICK A 2ST 2 A O4 2ST 2 1_555 A DA 7 A N6 DA 7 8_554 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 6 A N3 DC 6 8_554 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 6 A O2 DC 6 8_554 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 6 A N4 DC 6 8_554 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 5 A N3 DC 5 8_554 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 5 A O2 DC 5 8_554 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 5 A N4 DC 5 8_554 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 4 A N1 DG 4 8_554 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 4 A O6 DG 4 8_554 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 4 A N2 DG 4 8_554 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 3 A N1 DG 3 8_554 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 3 A O6 DG 3 8_554 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 3 A N2 DG 3 8_554 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A 2ST 2 A N3 2ST 2 8_554 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A 2ST 2 A O4 2ST 2 8_554 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 8_554 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 8_554 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 8_554 DNA platinum crosslink, selenium, DNA 4I1G PDB 1 4I1G 1 8 4I1G 1 8 4I1G A 1 1 8 BINDING SITE FOR RESIDUE PT A 101 A PT 101 Software 1 BINDING SITE FOR RESIDUE PT A 102 A PT 102 Software 1 A DG 1 A DG 1 1 1_555 A DG 4 A DG 4 1 1_555 96 P 43 21 2