0.021304
0.000000
0.006819
0.000000
0.010428
0.000000
0.000000
0.000000
0.022231
0.00000
0.00000
0.00000
Gouge, J.
Delarue, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
107.75
90.00
46.940
95.900
47.230
C10 H15 N2 O7 P
306.209
n
3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H17 N2 O13 P3
466.169
n
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
DNA OH 3 prime terminus
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
S
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
S
C
N
38
N
C
N
39
N
O
N
40
N
C
N
41
N
O
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
N
N
59
N
N
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
R
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
S
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
R
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
S
C
N
129
N
O
N
130
R
C
N
131
N
N
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
R
P
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
P
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
O
N
176
S
C
N
177
N
O
N
178
N
C
N
179
R
C
Y
180
N
N
Y
181
N
C
Y
182
N
N
Y
183
N
C
Y
184
N
C
N
185
N
N
Y
186
N
N
Y
187
N
C
Y
188
N
N
Y
189
N
C
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
N
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
Y
258
N
C
Y
259
N
N
Y
260
N
C
Y
261
N
C
Y
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
S
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
N
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
S
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
MG
N
367
N
NA
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
R
C
N
427
N
O
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
N
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
N
N
491
S
C
N
492
N
C
N
493
N
O
N
494
N
C
N
495
N
C
N
496
N
C
N
497
N
O
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
Y
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
doub
N
197
N
sing
N
198
N
sing
Y
199
N
sing
Y
200
N
doub
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
doub
Y
262
N
doub
N
263
N
sing
Y
264
N
sing
N
265
N
sing
Y
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
sing
Y
446
N
doub
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
Y
465
N
doub
Y
466
N
sing
Y
467
N
sing
N
468
N
sing
Y
469
N
doub
N
470
N
sing
Y
471
N
doub
N
472
N
sing
Y
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
4334
4352
10.1016/j.jmb.2013.07.009
23856622
Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
2013
10.2210/pdb4i27/pdb
pdb_00004i27
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-04-01
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.8726
1.0
ID23-2
ESRF
0.8726
SYNCHROTRON
ESRF BEAMLINE ID23-2
45704.008
DNA nucleotidylexotransferase
2.7.7.31
SEE REMARK 999
1
man
polymer
1809.270
5'-D(*AP*AP*AP*AP*AP*T)-3'
1
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
466.169
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
205
nat
water
Terminal addition enzyme, Terminal deoxynucleotidyltransferase, TDT, Terminal transferase
no
no
MGSSHHHHHHSSGLVPRGSHMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLA
FMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMG
FRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITS
PEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKA
IRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
MGSSHHHHHHSSGLVPRGSHMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLA
FMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMG
FRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITS
PEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKA
IRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
A
polypeptide(L)
no
yes
(DA)(DA)(DA)(DA)(DA)(2DT)
AAAAAT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
22
372
Dntt, Tdt
10090
Mus musculus
562
Escherichia coli
mouse
sample
373
400
Dntt, Tdt
10090
Mus musculus
562
Escherichia coli
1
2.13
42.26
VAPOR DIFFUSION, HANGING DROP
8.0
20% PEG4000, 20% isopropanol, 100 mM sodium citrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
entity_src_gen
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Refinement description
Source and taxonomy
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-07-24
1
1
2013-07-31
1
2
2013-11-13
1
3
2017-07-26
1
4
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-11-21
REL
REL
MG
MAGNESIUM ION
D3T
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
NA
SODIUM ION
HOH
water
PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) ISOFORM (UNP RESIDUES 132-482, 503-530).
1JMS
PDB ENTRY 1JMS
PDB
experimental model
MG
1
3
MG
MG
601
A
TTP
1
4
D3T
D3T
602
A
NA
1
5
NA
NA
603
A
HOH
1
6
HOH
HOH
701
A
HOH
2
6
HOH
HOH
702
A
HOH
3
6
HOH
HOH
703
A
HOH
4
6
HOH
HOH
704
A
HOH
5
6
HOH
HOH
705
A
HOH
6
6
HOH
HOH
706
A
HOH
7
6
HOH
HOH
707
A
HOH
8
6
HOH
HOH
708
A
HOH
10
6
HOH
HOH
709
A
HOH
11
6
HOH
HOH
710
A
HOH
12
6
HOH
HOH
711
A
HOH
13
6
HOH
HOH
712
A
HOH
14
6
HOH
HOH
713
A
HOH
15
6
HOH
HOH
714
A
HOH
16
6
HOH
HOH
715
A
HOH
17
6
HOH
HOH
716
A
HOH
18
6
HOH
HOH
717
A
HOH
19
6
HOH
HOH
718
A
HOH
20
6
HOH
HOH
719
A
HOH
21
6
HOH
HOH
720
A
HOH
22
6
HOH
HOH
721
A
HOH
23
6
HOH
HOH
722
A
HOH
24
6
HOH
HOH
723
A
HOH
25
6
HOH
HOH
724
A
HOH
26
6
HOH
HOH
725
A
HOH
27
6
HOH
HOH
726
A
HOH
28
6
HOH
HOH
727
A
HOH
29
6
HOH
HOH
728
A
HOH
30
6
HOH
HOH
729
A
HOH
31
6
HOH
HOH
730
A
HOH
32
6
HOH
HOH
731
A
HOH
33
6
HOH
HOH
732
A
HOH
34
6
HOH
HOH
733
A
HOH
35
6
HOH
HOH
734
A
HOH
36
6
HOH
HOH
735
A
HOH
37
6
HOH
HOH
736
A
HOH
38
6
HOH
HOH
737
A
HOH
39
6
HOH
HOH
738
A
HOH
40
6
HOH
HOH
739
A
HOH
41
6
HOH
HOH
740
A
HOH
42
6
HOH
HOH
741
A
HOH
43
6
HOH
HOH
742
A
HOH
44
6
HOH
HOH
743
A
HOH
45
6
HOH
HOH
744
A
HOH
46
6
HOH
HOH
745
A
HOH
48
6
HOH
HOH
746
A
HOH
49
6
HOH
HOH
747
A
HOH
50
6
HOH
HOH
748
A
HOH
51
6
HOH
HOH
749
A
HOH
52
6
HOH
HOH
750
A
HOH
53
6
HOH
HOH
751
A
HOH
54
6
HOH
HOH
752
A
HOH
55
6
HOH
HOH
753
A
HOH
56
6
HOH
HOH
754
A
HOH
57
6
HOH
HOH
755
A
HOH
58
6
HOH
HOH
756
A
HOH
59
6
HOH
HOH
757
A
HOH
60
6
HOH
HOH
758
A
HOH
61
6
HOH
HOH
759
A
HOH
62
6
HOH
HOH
760
A
HOH
63
6
HOH
HOH
761
A
HOH
64
6
HOH
HOH
762
A
HOH
65
6
HOH
HOH
763
A
HOH
66
6
HOH
HOH
764
A
HOH
67
6
HOH
HOH
765
A
HOH
68
6
HOH
HOH
766
A
HOH
69
6
HOH
HOH
767
A
HOH
70
6
HOH
HOH
768
A
HOH
71
6
HOH
HOH
769
A
HOH
72
6
HOH
HOH
770
A
HOH
73
6
HOH
HOH
771
A
HOH
74
6
HOH
HOH
772
A
HOH
75
6
HOH
HOH
773
A
HOH
76
6
HOH
HOH
774
A
HOH
78
6
HOH
HOH
775
A
HOH
79
6
HOH
HOH
776
A
HOH
80
6
HOH
HOH
777
A
HOH
81
6
HOH
HOH
778
A
HOH
82
6
HOH
HOH
779
A
HOH
83
6
HOH
HOH
780
A
HOH
84
6
HOH
HOH
781
A
HOH
85
6
HOH
HOH
782
A
HOH
86
6
HOH
HOH
783
A
HOH
87
6
HOH
HOH
784
A
HOH
88
6
HOH
HOH
785
A
HOH
89
6
HOH
HOH
786
A
HOH
90
6
HOH
HOH
787
A
HOH
91
6
HOH
HOH
788
A
HOH
92
6
HOH
HOH
789
A
HOH
93
6
HOH
HOH
790
A
HOH
94
6
HOH
HOH
791
A
HOH
95
6
HOH
HOH
792
A
HOH
96
6
HOH
HOH
793
A
HOH
97
6
HOH
HOH
794
A
HOH
98
6
HOH
HOH
795
A
HOH
101
6
HOH
HOH
796
A
HOH
102
6
HOH
HOH
797
A
HOH
103
6
HOH
HOH
798
A
HOH
104
6
HOH
HOH
799
A
HOH
105
6
HOH
HOH
800
A
HOH
106
6
HOH
HOH
801
A
HOH
107
6
HOH
HOH
802
A
HOH
108
6
HOH
HOH
803
A
HOH
109
6
HOH
HOH
804
A
HOH
110
6
HOH
HOH
805
A
HOH
111
6
HOH
HOH
806
A
HOH
112
6
HOH
HOH
807
A
HOH
113
6
HOH
HOH
808
A
HOH
114
6
HOH
HOH
809
A
HOH
115
6
HOH
HOH
810
A
HOH
116
6
HOH
HOH
811
A
HOH
117
6
HOH
HOH
812
A
HOH
118
6
HOH
HOH
813
A
HOH
119
6
HOH
HOH
814
A
HOH
120
6
HOH
HOH
815
A
HOH
121
6
HOH
HOH
816
A
HOH
122
6
HOH
HOH
817
A
HOH
123
6
HOH
HOH
818
A
HOH
124
6
HOH
HOH
819
A
HOH
125
6
HOH
HOH
820
A
HOH
126
6
HOH
HOH
821
A
HOH
127
6
HOH
HOH
822
A
HOH
128
6
HOH
HOH
823
A
HOH
130
6
HOH
HOH
824
A
HOH
131
6
HOH
HOH
825
A
HOH
132
6
HOH
HOH
826
A
HOH
133
6
HOH
HOH
827
A
HOH
134
6
HOH
HOH
828
A
HOH
135
6
HOH
HOH
829
A
HOH
136
6
HOH
HOH
830
A
HOH
137
6
HOH
HOH
831
A
HOH
139
6
HOH
HOH
832
A
HOH
140
6
HOH
HOH
833
A
HOH
141
6
HOH
HOH
834
A
HOH
142
6
HOH
HOH
835
A
HOH
143
6
HOH
HOH
836
A
HOH
144
6
HOH
HOH
837
A
HOH
145
6
HOH
HOH
838
A
HOH
146
6
HOH
HOH
839
A
HOH
147
6
HOH
HOH
840
A
HOH
148
6
HOH
HOH
841
A
HOH
149
6
HOH
HOH
842
A
HOH
150
6
HOH
HOH
843
A
HOH
151
6
HOH
HOH
844
A
HOH
152
6
HOH
HOH
845
A
HOH
153
6
HOH
HOH
846
A
HOH
154
6
HOH
HOH
847
A
HOH
155
6
HOH
HOH
848
A
HOH
156
6
HOH
HOH
849
A
HOH
157
6
HOH
HOH
850
A
HOH
158
6
HOH
HOH
851
A
HOH
159
6
HOH
HOH
852
A
HOH
160
6
HOH
HOH
853
A
HOH
161
6
HOH
HOH
854
A
HOH
162
6
HOH
HOH
855
A
HOH
163
6
HOH
HOH
856
A
HOH
164
6
HOH
HOH
857
A
HOH
165
6
HOH
HOH
858
A
HOH
166
6
HOH
HOH
859
A
HOH
167
6
HOH
HOH
860
A
HOH
168
6
HOH
HOH
861
A
HOH
170
6
HOH
HOH
862
A
HOH
171
6
HOH
HOH
863
A
HOH
172
6
HOH
HOH
864
A
HOH
173
6
HOH
HOH
865
A
HOH
174
6
HOH
HOH
866
A
HOH
175
6
HOH
HOH
867
A
HOH
177
6
HOH
HOH
868
A
HOH
178
6
HOH
HOH
869
A
HOH
179
6
HOH
HOH
870
A
HOH
180
6
HOH
HOH
871
A
HOH
181
6
HOH
HOH
872
A
HOH
182
6
HOH
HOH
873
A
HOH
183
6
HOH
HOH
874
A
HOH
184
6
HOH
HOH
875
A
HOH
185
6
HOH
HOH
876
A
HOH
186
6
HOH
HOH
877
A
HOH
187
6
HOH
HOH
878
A
HOH
188
6
HOH
HOH
879
A
HOH
189
6
HOH
HOH
880
A
HOH
190
6
HOH
HOH
881
A
HOH
191
6
HOH
HOH
882
A
HOH
192
6
HOH
HOH
883
A
HOH
193
6
HOH
HOH
884
A
HOH
194
6
HOH
HOH
885
A
HOH
195
6
HOH
HOH
886
A
HOH
196
6
HOH
HOH
887
A
HOH
197
6
HOH
HOH
888
A
HOH
198
6
HOH
HOH
889
A
HOH
199
6
HOH
HOH
890
A
HOH
200
6
HOH
HOH
891
A
HOH
201
6
HOH
HOH
892
A
HOH
202
6
HOH
HOH
893
A
HOH
203
6
HOH
HOH
894
A
HOH
204
6
HOH
HOH
895
A
HOH
205
6
HOH
HOH
896
A
HOH
206
6
HOH
HOH
897
A
HOH
138
6
HOH
HOH
101
C
HOH
9
6
HOH
HOH
102
C
HOH
47
6
HOH
HOH
103
C
HOH
77
6
HOH
HOH
104
C
HOH
99
6
HOH
HOH
105
C
HOH
129
6
HOH
HOH
106
C
HOH
169
6
HOH
HOH
107
C
HOH
176
6
HOH
HOH
108
C
n
1
111
A
n
2
112
A
n
3
113
A
n
4
114
A
n
5
115
A
n
6
116
A
n
7
117
A
n
8
118
A
n
9
119
A
n
10
120
A
n
11
121
A
n
12
122
A
n
13
123
A
n
14
124
A
n
15
125
A
n
16
126
A
n
17
127
A
n
18
128
A
n
19
129
A
n
20
130
A
n
21
131
A
n
22
132
A
n
23
133
A
n
24
134
A
n
25
135
A
n
26
136
A
n
27
137
A
n
28
138
A
n
29
139
A
n
30
140
A
n
31
141
A
n
32
142
A
n
33
143
A
n
34
144
A
n
35
145
A
ALA
146
n
36
ALA
146
A
ALA
147
n
37
VAL
147
A
ALA
148
n
38
LYS
148
A
ALA
149
n
39
LYS
149
A
ILE
150
n
40
ILE
150
A
SER
151
n
41
SER
151
A
GLN
152
n
42
GLN
152
A
TYR
153
n
43
TYR
153
A
ALA
154
n
44
ALA
154
A
CYS
155
n
45
CYS
155
A
GLN
156
n
46
GLN
156
A
ARG
157
n
47
ARG
157
A
ARG
158
n
48
ARG
158
A
THR
159
n
49
THR
159
A
THR
160
n
50
THR
160
A
LEU
161
n
51
LEU
161
A
ASN
162
n
52
ASN
162
A
ASN
163
n
53
ASN
163
A
TYR
164
n
54
TYR
164
A
ASN
165
n
55
ASN
165
A
GLN
166
n
56
GLN
166
A
LEU
167
n
57
LEU
167
A
PHE
168
n
58
PHE
168
A
THR
169
n
59
THR
169
A
ASP
170
n
60
ASP
170
A
ALA
171
n
61
ALA
171
A
LEU
172
n
62
LEU
172
A
ASP
173
n
63
ASP
173
A
ILE
174
n
64
ILE
174
A
LEU
175
n
65
LEU
175
A
ALA
176
n
66
ALA
176
A
GLU
177
n
67
GLU
177
A
ASN
178
n
68
ASN
178
A
ASP
179
n
69
ASP
179
A
GLU
180
n
70
GLU
180
A
LEU
181
n
71
LEU
181
A
ARG
182
n
72
ARG
182
A
GLU
183
n
73
GLU
183
A
ASN
184
n
74
ASN
184
A
GLU
185
n
75
GLU
185
A
GLY
186
n
76
GLY
186
A
SER
187
n
77
SER
187
A
CYS
188
n
78
CYS
188
A
LEU
189
n
79
LEU
189
A
ALA
190
n
80
ALA
190
A
PHE
191
n
81
PHE
191
A
MET
192
n
82
MET
192
A
ARG
193
n
83
ARG
193
A
ALA
194
n
84
ALA
194
A
SER
195
n
85
SER
195
A
SER
196
n
86
SER
196
A
VAL
197
n
87
VAL
197
A
LEU
198
n
88
LEU
198
A
LYS
199
n
89
LYS
199
A
SER
200
n
90
SER
200
A
LEU
201
n
91
LEU
201
A
PRO
202
n
92
PRO
202
A
PHE
203
n
93
PHE
203
A
PRO
204
n
94
PRO
204
A
ILE
205
n
95
ILE
205
A
THR
206
n
96
THR
206
A
SER
207
n
97
SER
207
A
MET
208
n
98
MET
208
A
LYS
209
n
99
LYS
209
A
ASP
210
n
100
ASP
210
A
THR
211
n
101
THR
211
A
GLU
212
n
102
GLU
212
A
GLY
213
n
103
GLY
213
A
ILE
214
n
104
ILE
214
A
PRO
215
n
105
PRO
215
A
CYS
216
n
106
CYS
216
A
LEU
217
n
107
LEU
217
A
GLY
218
n
108
GLY
218
A
ASP
219
n
109
ASP
219
A
LYS
220
n
110
LYS
220
A
VAL
221
n
111
VAL
221
A
LYS
222
n
112
LYS
222
A
SER
223
n
113
SER
223
A
ILE
224
n
114
ILE
224
A
ILE
225
n
115
ILE
225
A
GLU
226
n
116
GLU
226
A
GLY
227
n
117
GLY
227
A
ILE
228
n
118
ILE
228
A
ILE
229
n
119
ILE
229
A
GLU
230
n
120
GLU
230
A
ASP
231
n
121
ASP
231
A
GLY
232
n
122
GLY
232
A
GLU
233
n
123
GLU
233
A
SER
234
n
124
SER
234
A
SER
235
n
125
SER
235
A
GLU
236
n
126
GLU
236
A
ALA
237
n
127
ALA
237
A
LYS
238
n
128
LYS
238
A
ALA
239
n
129
ALA
239
A
VAL
240
n
130
VAL
240
A
LEU
241
n
131
LEU
241
A
ASN
242
n
132
ASN
242
A
ASP
243
n
133
ASP
243
A
GLU
244
n
134
GLU
244
A
ARG
245
n
135
ARG
245
A
TYR
246
n
136
TYR
246
A
LYS
247
n
137
LYS
247
A
SER
248
n
138
SER
248
A
PHE
249
n
139
PHE
249
A
LYS
250
n
140
LYS
250
A
LEU
251
n
141
LEU
251
A
PHE
252
n
142
PHE
252
A
THR
253
n
143
THR
253
A
SER
254
n
144
SER
254
A
VAL
255
n
145
VAL
255
A
PHE
256
n
146
PHE
256
A
GLY
257
n
147
GLY
257
A
VAL
258
n
148
VAL
258
A
GLY
259
n
149
GLY
259
A
LEU
260
n
150
LEU
260
A
LYS
261
n
151
LYS
261
A
THR
262
n
152
THR
262
A
ALA
263
n
153
ALA
263
A
GLU
264
n
154
GLU
264
A
LYS
265
n
155
LYS
265
A
TRP
266
n
156
TRP
266
A
PHE
267
n
157
PHE
267
A
ARG
268
n
158
ARG
268
A
MET
269
n
159
MET
269
A
GLY
270
n
160
GLY
270
A
PHE
271
n
161
PHE
271
A
ARG
272
n
162
ARG
272
A
THR
273
n
163
THR
273
A
LEU
274
n
164
LEU
274
A
SER
275
n
165
SER
275
A
LYS
276
n
166
LYS
276
A
ILE
277
n
167
ILE
277
A
GLN
278
n
168
GLN
278
A
SER
279
n
169
SER
279
A
ASP
280
n
170
ASP
280
A
LYS
281
n
171
LYS
281
A
SER
282
n
172
SER
282
A
LEU
283
n
173
LEU
283
A
ARG
284
n
174
ARG
284
A
PHE
285
n
175
PHE
285
A
THR
286
n
176
THR
286
A
GLN
287
n
177
GLN
287
A
MET
288
n
178
MET
288
A
GLN
289
n
179
GLN
289
A
LYS
290
n
180
LYS
290
A
ALA
291
n
181
ALA
291
A
GLY
292
n
182
GLY
292
A
PHE
293
n
183
PHE
293
A
LEU
294
n
184
LEU
294
A
TYR
295
n
185
TYR
295
A
TYR
296
n
186
TYR
296
A
GLU
297
n
187
GLU
297
A
ASP
298
n
188
ASP
298
A
LEU
299
n
189
LEU
299
A
VAL
300
n
190
VAL
300
A
SER
301
n
191
SER
301
A
CYS
302
n
192
CYS
302
A
VAL
303
n
193
VAL
303
A
ASN
304
n
194
ASN
304
A
ARG
305
n
195
ARG
305
A
PRO
306
n
196
PRO
306
A
GLU
307
n
197
GLU
307
A
ALA
308
n
198
ALA
308
A
GLU
309
n
199
GLU
309
A
ALA
310
n
200
ALA
310
A
VAL
311
n
201
VAL
311
A
SER
312
n
202
SER
312
A
MET
313
n
203
MET
313
A
LEU
314
n
204
LEU
314
A
VAL
315
n
205
VAL
315
A
LYS
316
n
206
LYS
316
A
GLU
317
n
207
GLU
317
A
ALA
318
n
208
ALA
318
A
VAL
319
n
209
VAL
319
A
VAL
320
n
210
VAL
320
A
THR
321
n
211
THR
321
A
PHE
322
n
212
PHE
322
A
LEU
323
n
213
LEU
323
A
PRO
324
n
214
PRO
324
A
ASP
325
n
215
ASP
325
A
ALA
326
n
216
ALA
326
A
LEU
327
n
217
LEU
327
A
VAL
328
n
218
VAL
328
A
THR
329
n
219
THR
329
A
MET
330
n
220
MET
330
A
THR
331
n
221
THR
331
A
GLY
332
n
222
GLY
332
A
GLY
333
n
223
GLY
333
A
PHE
334
n
224
PHE
334
A
ARG
335
n
225
ARG
335
A
ARG
336
n
226
ARG
336
A
GLY
337
n
227
GLY
337
A
LYS
338
n
228
LYS
338
A
MET
339
n
229
MET
339
A
THR
340
n
230
THR
340
A
GLY
341
n
231
GLY
341
A
HIS
342
n
232
HIS
342
A
ASP
343
n
233
ASP
343
A
VAL
344
n
234
VAL
344
A
ASP
345
n
235
ASP
345
A
PHE
346
n
236
PHE
346
A
LEU
347
n
237
LEU
347
A
ILE
348
n
238
ILE
348
A
THR
349
n
239
THR
349
A
SER
350
n
240
SER
350
A
PRO
351
n
241
PRO
351
A
GLU
352
n
242
GLU
352
A
ALA
353
n
243
ALA
353
A
THR
354
n
244
THR
354
A
GLU
355
n
245
GLU
355
A
ASP
356
n
246
ASP
356
A
GLU
357
n
247
GLU
357
A
GLU
358
n
248
GLU
358
A
GLN
359
n
249
GLN
359
A
GLN
360
n
250
GLN
360
A
LEU
361
n
251
LEU
361
A
LEU
362
n
252
LEU
362
A
HIS
363
n
253
HIS
363
A
LYS
364
n
254
LYS
364
A
VAL
365
n
255
VAL
365
A
THR
366
n
256
THR
366
A
ASP
367
n
257
ASP
367
A
PHE
368
n
258
PHE
368
A
TRP
369
n
259
TRP
369
A
LYS
370
n
260
LYS
370
A
GLN
371
n
261
GLN
371
A
GLN
372
n
262
GLN
372
A
GLY
373
n
263
GLY
373
A
LEU
374
n
264
LEU
374
A
LEU
375
n
265
LEU
375
A
LEU
376
n
266
LEU
376
A
TYR
377
n
267
TYR
377
A
CYS
378
n
268
CYS
378
A
ASP
379
n
269
ASP
379
A
ILE
380
n
270
ILE
380
A
LEU
381
n
271
LEU
381
A
GLU
382
n
272
GLU
382
A
SER
383
n
273
SER
383
A
THR
384
n
274
THR
384
A
PHE
385
n
275
PHE
385
A
GLU
386
n
276
GLU
386
A
LYS
387
n
277
LYS
387
A
PHE
388
n
278
PHE
388
A
LYS
389
n
279
LYS
389
A
GLN
390
n
280
GLN
390
A
PRO
391
n
281
PRO
391
A
SER
392
n
282
SER
392
A
n
283
393
A
n
284
394
A
n
285
395
A
n
286
396
A
ALA
397
n
287
ALA
397
A
LEU
398
n
288
LEU
398
A
ASP
399
n
289
ASP
399
A
HIS
400
n
290
HIS
400
A
PHE
401
n
291
PHE
401
A
GLN
402
n
292
GLN
402
A
LYS
403
n
293
LYS
403
A
CYS
404
n
294
CYS
404
A
PHE
405
n
295
PHE
405
A
LEU
406
n
296
LEU
406
A
ILE
407
n
297
ILE
407
A
LEU
408
n
298
LEU
408
A
LYS
409
n
299
LYS
409
A
LEU
410
n
300
LEU
410
A
ASP
411
n
301
ASP
411
A
HIS
412
n
302
HIS
412
A
GLY
413
n
303
GLY
413
A
ARG
414
n
304
ARG
414
A
VAL
415
n
305
VAL
415
A
HIS
416
n
306
HIS
416
A
SER
417
n
307
SER
417
A
ALA
418
n
308
GLU
418
A
LYS
419
n
309
LYS
419
A
SER
420
n
310
SER
420
A
GLY
421
n
311
GLY
421
A
GLN
422
n
312
GLN
422
A
GLN
423
n
313
GLN
423
A
GLU
424
n
314
GLU
424
A
GLY
425
n
315
GLY
425
A
LYS
426
n
316
LYS
426
A
GLY
427
n
317
GLY
427
A
TRP
428
n
318
TRP
428
A
LYS
429
n
319
LYS
429
A
ALA
430
n
320
ALA
430
A
ILE
431
n
321
ILE
431
A
ARG
432
n
322
ARG
432
A
VAL
433
n
323
VAL
433
A
ASP
434
n
324
ASP
434
A
LEU
435
n
325
LEU
435
A
VAL
436
n
326
VAL
436
A
MET
437
n
327
MET
437
A
CYS
438
n
328
CYS
438
A
PRO
439
n
329
PRO
439
A
TYR
440
n
330
TYR
440
A
ASP
441
n
331
ASP
441
A
ARG
442
n
332
ARG
442
A
ARG
443
n
333
ARG
443
A
ALA
444
n
334
ALA
444
A
PHE
445
n
335
PHE
445
A
ALA
446
n
336
ALA
446
A
LEU
447
n
337
LEU
447
A
LEU
448
n
338
LEU
448
A
GLY
449
n
339
GLY
449
A
TRP
450
n
340
TRP
450
A
THR
451
n
341
THR
451
A
GLY
452
n
342
GLY
452
A
SER
453
n
343
SER
453
A
ARG
454
n
344
ARG
454
A
GLN
455
n
345
GLN
455
A
PHE
456
n
346
PHE
456
A
GLU
457
n
347
GLU
457
A
ARG
458
n
348
ARG
458
A
ASP
459
n
349
ASP
459
A
LEU
460
n
350
LEU
460
A
ARG
461
n
351
ARG
461
A
ARG
462
n
352
ARG
462
A
TYR
463
n
353
TYR
463
A
ALA
464
n
354
ALA
464
A
THR
465
n
355
THR
465
A
HIS
466
n
356
HIS
466
A
GLU
467
n
357
GLU
467
A
ARG
468
n
358
ARG
468
A
LYS
469
n
359
LYS
469
A
MET
470
n
360
MET
470
A
MET
471
n
361
MET
471
A
LEU
472
n
362
LEU
472
A
ASP
473
n
363
ASP
473
A
ASN
474
n
364
ASN
474
A
HIS
475
n
365
HIS
475
A
ALA
476
n
366
ALA
476
A
LEU
477
n
367
LEU
477
A
TYR
478
n
368
TYR
478
A
ASP
479
n
369
ASP
479
A
ARG
480
n
370
ARG
480
A
THR
481
n
371
THR
481
A
LYS
482
n
372
LYS
482
A
ARG
483
n
373
ARG
483
A
VAL
484
n
374
VAL
484
A
PHE
485
n
375
PHE
485
A
LEU
486
n
376
LEU
486
A
GLU
487
n
377
GLU
487
A
ALA
488
n
378
ALA
488
A
GLU
489
n
379
GLU
489
A
SER
490
n
380
SER
490
A
GLU
491
n
381
GLU
491
A
GLU
492
n
382
GLU
492
A
GLU
493
n
383
GLU
493
A
ILE
494
n
384
ILE
494
A
PHE
495
n
385
PHE
495
A
ALA
496
n
386
ALA
496
A
HIS
497
n
387
HIS
497
A
LEU
498
n
388
LEU
498
A
GLY
499
n
389
GLY
499
A
LEU
500
n
390
LEU
500
A
ASP
501
n
391
ASP
501
A
TYR
502
n
392
TYR
502
A
ILE
503
n
393
ILE
503
A
GLU
504
n
394
GLU
504
A
PRO
505
n
395
PRO
505
A
TRP
506
n
396
TRP
506
A
GLU
507
n
397
GLU
507
A
ARG
508
n
398
ARG
508
A
ASN
509
n
399
ASN
509
A
ALA
510
n
400
ALA
510
A
A
1
n
1
DA
1
C
A
2
n
2
DA
2
C
A
3
n
3
DA
3
C
A
4
n
4
DA
4
C
A
5
n
5
DA
5
C
2DT
6
n
6
2DT
6
C
3.0512
-3.5180
-1.9266
0.0025
1.9298
-1.5391
0.0502
0.1783
-0.0701
-0.0779
0.0621
-0.0820
-0.1165
0.2162
-0.1123
-0.0593
-0.0491
0.0006
0.0609
0.0606
-0.0562
refined
7.2976
13.4161
2.5131
X-RAY DIFFRACTION
-0.8235
-0.1699
1.9269
1.9544
2.2795
2.6780
-0.0273
0.1204
-0.0138
0.1507
-0.0713
0.0360
0.1924
-0.2140
0.0985
0.0143
0.0415
-0.0142
0.0108
0.0157
-0.0576
refined
6.5254
13.1651
20.5440
X-RAY DIFFRACTION
0.2193
-0.1180
-0.0336
0.2268
0.0185
0.3717
0.0193
-0.0425
-0.0368
0.0452
-0.0269
0.0135
0.0363
-0.0208
0.0075
-0.0472
-0.0108
0.0130
0.0042
0.0145
-0.0836
refined
1.9588
-1.3477
18.9462
X-RAY DIFFRACTION
1.1874
0.8459
1.0105
0.0035
-1.5044
1.2136
0.0186
0.2435
-0.2558
0.2300
-0.0691
0.0686
0.1013
0.0096
0.0505
-0.0168
-0.0227
-0.0064
0.0584
-0.0472
-0.0966
refined
-6.9029
-11.6583
14.8176
X-RAY DIFFRACTION
0.2003
-0.1407
-0.3600
1.1108
-0.0054
0.2940
-0.0434
-0.0482
-0.0273
0.0733
0.1223
0.0658
-0.0327
-0.1425
-0.0789
-0.0503
0.0028
0.0117
0.0253
-0.0071
-0.0757
refined
-8.3406
4.7191
4.1635
X-RAY DIFFRACTION
2.4493
-0.5087
-0.3654
0.0000
1.8851
-0.4396
0.0030
0.0721
0.1179
0.0635
0.0562
0.3576
-0.0330
-0.1721
-0.0592
0.0333
0.0522
0.1438
0.3017
-0.0350
-0.2315
refined
-11.9212
-0.4556
27.3894
X-RAY DIFFRACTION
A
146
A
164
X-RAY DIFFRACTION
1
{A|146 - 164}
A
166
A
195
X-RAY DIFFRACTION
2
{A|166 - 195}
A
196
A
368
X-RAY DIFFRACTION
3
{A|196 - 368}
A
369
A
424
X-RAY DIFFRACTION
4
{A|369 - 424}
A
425
A
510
X-RAY DIFFRACTION
5
{A|425 - 510}
C
1
C
6
X-RAY DIFFRACTION
6
{C|1 - 6}
author_and_software_defined_assembly
PISA
2
dimeric
2160
-30
18500
A
THR
253
A
O
THR
143
1_555
A
NA
603
E
NA
NA
1_555
A
VAL
255
A
O
VAL
145
1_555
90.3
A
THR
253
A
O
THR
143
1_555
A
NA
603
E
NA
NA
1_555
A
VAL
258
A
O
VAL
148
1_555
92.9
A
VAL
255
A
O
VAL
145
1_555
A
NA
603
E
NA
NA
1_555
A
VAL
258
A
O
VAL
148
1_555
88.1
A
THR
253
A
O
THR
143
1_555
A
NA
603
E
NA
NA
1_555
C
DA
5
B
OP1
DA
5
1_555
177.5
A
VAL
255
A
O
VAL
145
1_555
A
NA
603
E
NA
NA
1_555
C
DA
5
B
OP1
DA
5
1_555
91.4
A
VAL
258
A
O
VAL
148
1_555
A
NA
603
E
NA
NA
1_555
C
DA
5
B
OP1
DA
5
1_555
89.0
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
A
ASP
345
A
OD2
ASP
235
1_555
94.0
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O1A
D3T
1_555
93.1
A
ASP
345
A
OD2
ASP
235
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O1A
D3T
1_555
93.7
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O2B
D3T
1_555
168.0
A
ASP
345
A
OD2
ASP
235
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O2B
D3T
1_555
97.9
A
D3T
602
D
O1A
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O2B
D3T
1_555
87.4
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O3G
D3T
1_555
90.6
A
ASP
345
A
OD2
ASP
235
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O3G
D3T
1_555
175.4
A
D3T
602
D
O1A
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O3G
D3T
1_555
85.5
A
D3T
602
D
O2B
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O3G
D3T
1_555
77.5
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
99.5
A
ASP
345
A
OD2
ASP
235
1_555
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
99.1
A
D3T
602
D
O1A
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
161.3
A
D3T
602
D
O2B
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
77.4
A
D3T
602
D
O3G
D3T
1_555
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
80.6
C
2DT
6
3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
B
2DT
6
DT
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
303
A
N
VAL
193
A
O
GLY
341
A
O
GLY
231
A
N
LEU
327
A
N
LEU
217
A
O
THR
349
A
O
THR
239
A
N
ILE
348
A
N
ILE
238
A
O
VAL
436
A
O
VAL
326
A
O
ILE
431
A
O
ILE
321
A
N
LEU
408
A
N
LEU
298
A
O
LYS
403
A
O
LYS
293
A
N
LEU
381
A
N
LEU
271
A
N
MET
471
A
N
MET
361
A
O
TYR
478
A
O
TYR
368
A
N
LEU
477
A
N
LEU
367
A
O
LEU
486
A
O
LEU
376
1
A
CG1
VAL
147
A
CG1
VAL
37
1
Y
1
A
CG2
VAL
147
A
CG2
VAL
37
1
Y
1
A
CG
LYS
148
A
CG
LYS
38
1
Y
1
A
CD
LYS
148
A
CD
LYS
38
1
Y
1
A
CE
LYS
148
A
CE
LYS
38
1
Y
1
A
NZ
LYS
148
A
NZ
LYS
38
1
Y
1
A
CG
LYS
149
A
CG
LYS
39
1
Y
1
A
CD
LYS
149
A
CD
LYS
39
1
Y
1
A
CE
LYS
149
A
CE
LYS
39
1
Y
1
A
NZ
LYS
149
A
NZ
LYS
39
1
Y
1
A
CG
GLU
185
A
CG
GLU
75
1
Y
1
A
CD
GLU
185
A
CD
GLU
75
1
Y
1
A
OE1
GLU
185
A
OE1
GLU
75
1
Y
1
A
OE2
GLU
185
A
OE2
GLU
75
1
Y
1
A
CG
LYS
281
A
CG
LYS
171
1
Y
1
A
CD
LYS
281
A
CD
LYS
171
1
Y
1
A
CE
LYS
281
A
CE
LYS
171
1
Y
1
A
NZ
LYS
281
A
NZ
LYS
171
1
Y
1
A
CG
ARG
284
A
CG
ARG
174
1
Y
1
A
CD
ARG
284
A
CD
ARG
174
1
Y
1
A
NE
ARG
284
A
NE
ARG
174
1
Y
1
A
CZ
ARG
284
A
CZ
ARG
174
1
Y
1
A
NH1
ARG
284
A
NH1
ARG
174
1
Y
1
A
NH2
ARG
284
A
NH2
ARG
174
1
Y
1
A
CG
GLU
317
A
CG
GLU
207
1
Y
1
A
CD
GLU
317
A
CD
GLU
207
1
Y
1
A
OE1
GLU
317
A
OE1
GLU
207
1
Y
1
A
OE2
GLU
317
A
OE2
GLU
207
1
Y
1
A
CG
GLU
418
A
CG
GLU
308
1
Y
1
A
CD
GLU
418
A
CD
GLU
308
1
Y
1
A
OE1
GLU
418
A
OE1
GLU
308
1
Y
1
A
OE2
GLU
418
A
OE2
GLU
308
1
Y
1
A
CG
GLN
422
A
CG
GLN
312
1
Y
1
A
CD
GLN
422
A
CD
GLN
312
1
Y
1
A
OE1
GLN
422
A
OE1
GLN
312
1
Y
1
A
NE2
GLN
422
A
NE2
GLN
312
1
Y
1
A
CG
ARG
454
A
CG
ARG
344
1
Y
1
A
CD
ARG
454
A
CD
ARG
344
1
Y
1
A
NE
ARG
454
A
NE
ARG
344
1
Y
1
A
CZ
ARG
454
A
CZ
ARG
344
1
Y
1
A
NH1
ARG
454
A
NH1
ARG
344
1
Y
1
A
NH2
ARG
454
A
NH2
ARG
344
1
Y
1
A
CG
LYS
469
A
CG
LYS
359
1
Y
1
A
CD
LYS
469
A
CD
LYS
359
1
Y
1
A
CE
LYS
469
A
CE
LYS
359
1
Y
1
A
NZ
LYS
469
A
NZ
LYS
359
1
Y
1
A
CG
LYS
482
A
CG
LYS
372
1
Y
1
A
CD
LYS
482
A
CD
LYS
372
1
Y
1
A
CE
LYS
482
A
CE
LYS
372
1
Y
1
A
NZ
LYS
482
A
NZ
LYS
372
1
Y
1
A
MET
111
A
MET
1
1
Y
1
A
GLY
112
A
GLY
2
1
Y
1
A
SER
113
A
SER
3
1
Y
1
A
SER
114
A
SER
4
1
Y
1
A
HIS
115
A
HIS
5
1
Y
1
A
HIS
116
A
HIS
6
1
Y
1
A
HIS
117
A
HIS
7
1
Y
1
A
HIS
118
A
HIS
8
1
Y
1
A
HIS
119
A
HIS
9
1
Y
1
A
HIS
120
A
HIS
10
1
Y
1
A
SER
121
A
SER
11
1
Y
1
A
SER
122
A
SER
12
1
Y
1
A
GLY
123
A
GLY
13
1
Y
1
A
LEU
124
A
LEU
14
1
Y
1
A
VAL
125
A
VAL
15
1
Y
1
A
PRO
126
A
PRO
16
1
Y
1
A
ARG
127
A
ARG
17
1
Y
1
A
GLY
128
A
GLY
18
1
Y
1
A
SER
129
A
SER
19
1
Y
1
A
HIS
130
A
HIS
20
1
Y
1
A
MET
131
A
MET
21
1
Y
1
A
SER
132
A
SER
22
1
Y
1
A
PRO
133
A
PRO
23
1
Y
1
A
SER
134
A
SER
24
1
Y
1
A
PRO
135
A
PRO
25
1
Y
1
A
VAL
136
A
VAL
26
1
Y
1
A
PRO
137
A
PRO
27
1
Y
1
A
GLY
138
A
GLY
28
1
Y
1
A
SER
139
A
SER
29
1
Y
1
A
GLN
140
A
GLN
30
1
Y
1
A
ASN
141
A
ASN
31
1
Y
1
A
VAL
142
A
VAL
32
1
Y
1
A
PRO
143
A
PRO
33
1
Y
1
A
ALA
144
A
ALA
34
1
Y
1
A
PRO
145
A
PRO
35
1
Y
1
A
ARG
393
A
ARG
283
1
Y
1
A
LYS
394
A
LYS
284
1
Y
1
A
VAL
395
A
VAL
285
1
Y
1
A
ASP
396
A
ASP
286
1
Y
1
4.16
0.30
108.30
112.46
C
C
C
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
8.38
1.20
119.70
128.08
C
C
C
C3'
O3'
P
DA
DA
DA
2
2
3
Y
1
9.79
1.20
119.70
129.49
C
C
C
C3'
O3'
P
DA
DA
DA
4
4
5
Y
1
7.27
0.30
108.30
115.57
C
C
C
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
A
THR
331
-111.99
-154.08
1
A
PRO
391
-55.24
-7.21
1
A
GLU
418
61.94
-20.60
1
A
ASN
509
-83.02
45.41
23.25
4.7269
0.0000
2.8091
-5.9064
0.0000
1.1795
0.9216
0.8709
0.2330
0.1712
0.1741
2.60
47.95
583
12229
4.77
99.40
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.3100
PDB ENTRY 1JMS
Engh & Huber
0.288
2.60
47.95
205
3225
30
121
2869
0.010
3092
HARMONIC
2.00
1.09
4198
HARMONIC
2.00
1461
SINUSOIDAL
2.00
75
HARMONIC
2.00
441
HARMONIC
5.00
3092
HARMONIC
20.00
0
SEMIHARMONIC
5.00
2.85
3.13
393
SEMIHARMONIC
5.00
3510
SEMIHARMONIC
4.00
0.3101
0.2014
0.2067
2.85
143
2756
2899
6
4.93
99.40
37.65
2.6
47.95
4I27
12246
0.137
1
3.2
99.5
0.461
2.6
2.74
2.5
1777
1
3.2
99.9
data collection
ADSC
Quantum
phasing
PHASER
refinement
BUSTER
2.11.2
data reduction
XDS
data scaling
SCALA
Ternary complex of mouse TdT with ssDNA and incoming nucleotide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
TYR
153
A
TYR
43
HELX_P
A
ARG
157
A
ARG
47
5
1
5
A
ASN
165
A
ASN
55
HELX_P
A
ARG
182
A
ARG
72
1
2
18
A
ASN
184
A
ASN
74
HELX_P
A
SER
200
A
SER
90
1
3
17
A
SER
207
A
SER
97
HELX_P
A
GLU
212
A
GLU
102
5
4
6
A
GLY
218
A
GLY
108
HELX_P
A
GLY
232
A
GLY
122
1
5
15
A
SER
234
A
SER
124
HELX_P
A
ASN
242
A
ASN
132
1
6
9
A
ASP
243
A
ASP
133
HELX_P
A
SER
254
A
SER
144
1
7
12
A
GLY
259
A
GLY
149
HELX_P
A
MET
269
A
MET
159
1
8
11
A
THR
273
A
THR
163
HELX_P
A
ASP
280
A
ASP
170
1
9
8
A
THR
286
A
THR
176
HELX_P
A
TYR
295
A
TYR
185
1
10
10
A
TYR
295
A
TYR
185
HELX_P
A
SER
301
A
SER
191
1
11
7
A
ARG
305
A
ARG
195
HELX_P
A
LEU
323
A
LEU
213
1
12
19
A
THR
331
A
THR
221
HELX_P
A
ARG
336
A
ARG
226
1
13
6
A
THR
354
A
THR
244
HELX_P
A
GLN
372
A
GLN
262
1
14
19
A
GLY
413
A
GLY
303
HELX_P
A
VAL
415
A
VAL
305
5
15
3
A
PRO
439
A
PRO
329
HELX_P
A
ASP
441
A
ASP
331
5
16
3
A
ARG
442
A
ARG
332
HELX_P
A
GLY
452
A
GLY
342
1
17
11
A
SER
453
A
SER
343
HELX_P
A
LYS
469
A
LYS
359
1
18
17
A
SER
490
A
SER
380
HELX_P
A
LEU
498
A
LEU
388
1
19
9
A
GLU
504
A
GLU
394
HELX_P
A
ARG
508
A
ARG
398
5
20
5
covale
1.615
both
C
DA
5
B
O3'
DA
5
1_555
C
2DT
6
B
P
2DT
6
1_555
metalc
2.314
A
THR
253
A
O
THR
143
1_555
A
NA
603
E
NA
NA
1_555
metalc
2.569
A
VAL
255
A
O
VAL
145
1_555
A
NA
603
E
NA
NA
1_555
metalc
2.572
A
VAL
258
A
O
VAL
148
1_555
A
NA
603
E
NA
NA
1_555
metalc
2.337
A
ASP
343
A
OD1
ASP
233
1_555
A
MG
601
C
MG
MG
1_555
metalc
2.646
A
ASP
345
A
OD2
ASP
235
1_555
A
MG
601
C
MG
MG
1_555
metalc
2.304
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O1A
D3T
1_555
metalc
2.622
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O2B
D3T
1_555
metalc
2.779
A
MG
601
C
MG
MG
1_555
A
D3T
602
D
O3G
D3T
1_555
metalc
2.710
A
MG
601
C
MG
MG
1_555
A
HOH
897
F
O
HOH
1_555
metalc
2.496
A
NA
603
E
NA
NA
1_555
C
DA
5
B
OP1
DA
5
1_555
TRANSFERASE/DNA
Terminal transferase, TRANSFERASE-DNA complex
A
GLY
452
A
GLY
342
1
A
SER
453
A
SER
343
-0.62
TDT_MOUSE
UNP
1
132
P09838
SPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDT
EGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKA
GFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQ
QGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWT
GSRQFERDLRRYATHERKMMLDNHALYDRTK
TDT_MOUSE
UNP
1
503
P09838
RVFLEAESEEEIFAHLGLDYIEPWERNA
4I27
PDB
2
1
4I27
AAAAA(2DT)
132
482
4I27
132
482
P09838
A
1
22
372
503
530
4I27
483
510
P09838
A
2
373
400
1
6
4I27
1
6
4I27
C
3
1
6
1
expression tag
MET
111
4I27
A
P09838
UNP
1
1
expression tag
GLY
112
4I27
A
P09838
UNP
2
1
expression tag
SER
113
4I27
A
P09838
UNP
3
1
expression tag
SER
114
4I27
A
P09838
UNP
4
1
expression tag
HIS
115
4I27
A
P09838
UNP
5
1
expression tag
HIS
116
4I27
A
P09838
UNP
6
1
expression tag
HIS
117
4I27
A
P09838
UNP
7
1
expression tag
HIS
118
4I27
A
P09838
UNP
8
1
expression tag
HIS
119
4I27
A
P09838
UNP
9
1
expression tag
HIS
120
4I27
A
P09838
UNP
10
1
expression tag
SER
121
4I27
A
P09838
UNP
11
1
expression tag
SER
122
4I27
A
P09838
UNP
12
1
expression tag
GLY
123
4I27
A
P09838
UNP
13
1
expression tag
LEU
124
4I27
A
P09838
UNP
14
1
expression tag
VAL
125
4I27
A
P09838
UNP
15
1
expression tag
PRO
126
4I27
A
P09838
UNP
16
1
expression tag
ARG
127
4I27
A
P09838
UNP
17
1
expression tag
GLY
128
4I27
A
P09838
UNP
18
1
expression tag
SER
129
4I27
A
P09838
UNP
19
1
expression tag
HIS
130
4I27
A
P09838
UNP
20
1
expression tag
MET
131
4I27
A
P09838
UNP
21
2
5
3
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
303
A
VAL
193
A
ASN
304
A
ASN
194
A
THR
340
A
THR
230
A
GLY
341
A
GLY
231
A
LEU
327
A
LEU
217
A
MET
330
A
MET
220
A
VAL
344
A
VAL
234
A
THR
349
A
THR
239
A
TRP
428
A
TRP
318
A
MET
437
A
MET
327
A
GLN
402
A
GLN
292
A
ASP
411
A
ASP
301
A
LEU
375
A
LEU
265
A
LEU
381
A
LEU
271
A
MET
470
A
MET
360
A
LEU
472
A
LEU
362
A
LEU
477
A
LEU
367
A
ASP
479
A
ASP
369
A
VAL
484
A
VAL
374
A
LEU
486
A
LEU
376
BINDING SITE FOR RESIDUE MG A 601
A
MG
601
Software
4
BINDING SITE FOR RESIDUE D3T A 602
A
D3T
602
Software
15
BINDING SITE FOR RESIDUE NA A 603
A
NA
603
Software
4
A
ASP
343
A
ASP
233
4
1_555
A
ASP
345
A
ASP
235
4
1_555
A
D3T
602
D
D3T
4
1_555
A
HOH
897
F
HOH
4
1_555
A
GLY
332
A
GLY
222
15
1_555
A
GLY
333
A
GLY
223
15
1_555
A
ARG
336
A
ARG
226
15
1_555
A
LYS
338
A
LYS
228
15
1_555
A
GLY
341
A
GLY
231
15
1_555
A
HIS
342
A
HIS
232
15
1_555
A
ASP
343
A
ASP
233
15
1_555
A
ASP
345
A
ASP
235
15
1_555
A
GLY
449
A
GLY
339
15
1_555
A
TRP
450
A
TRP
340
15
1_555
A
GLY
452
A
GLY
342
15
1_555
A
MG
601
C
MG
15
1_555
A
HOH
750
F
HOH
15
1_555
A
HOH
865
F
HOH
15
1_555
C
2DT
6
B
2DT
6
15
1_555
A
THR
253
A
THR
143
4
1_555
A
VAL
255
A
VAL
145
4
1_555
A
VAL
258
A
VAL
148
4
1_555
C
DA
5
B
DA
5
4
1_555
4
P 1 21 1