0.021304 0.000000 0.006819 0.000000 0.010428 0.000000 0.000000 0.000000 0.022231 0.00000 0.00000 0.00000 Gouge, J. Delarue, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 107.75 90.00 46.940 95.900 47.230 C10 H15 N2 O7 P 306.209 n 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H17 N2 O13 P3 466.169 n 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE DNA OH 3 prime terminus C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N O N 13 N C N 14 N C N 15 N C N 16 N C N 17 S C N 18 N O N 19 R C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 N C N 39 N O N 40 N C N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N C N 55 N C N 56 N N N 57 N C N 58 N N N 59 N N N 60 N O N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N N N 77 S C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N N N 94 S C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 R C N 111 N C N 112 N O N 113 N C N 114 N S N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 R P N 124 N O N 125 N O N 126 N O N 127 N C N 128 S C N 129 N O N 130 R C N 131 N N N 132 N C N 133 N C N 134 N O N 135 N N N 136 N C N 137 N O N 138 N C N 139 N C N 140 N C N 141 N C N 142 N O N 143 R P N 144 N O N 145 N O N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N P N 170 N O N 171 N O N 172 N O N 173 N C N 174 R C N 175 N O N 176 S C N 177 N O N 178 N C N 179 R C Y 180 N N Y 181 N C Y 182 N N Y 183 N C Y 184 N C N 185 N N Y 186 N N Y 187 N C Y 188 N N Y 189 N C N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C N 209 N C N 210 N C N 211 N O N 212 N N N 213 N O N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C N 229 N C N 230 N C N 231 N O N 232 N O N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 N C N 245 N C N 246 N O N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C Y 258 N C Y 259 N N Y 260 N C Y 261 N C Y 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N O N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 S C N 282 N C N 283 N C N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N C N 305 N C N 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N C N 327 N C N 328 N C N 329 N N N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N C N 352 N S N 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N MG N 367 N NA N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N O N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 R C N 427 N O N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N N Y 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C N 477 N O N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C N 493 N O N 494 N C N 495 N C N 496 N C N 497 N O N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N doub N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N sing Y 189 N sing Y 190 N doub N 191 N sing Y 192 N sing Y 193 N sing Y 194 N doub N 195 N sing Y 196 N doub N 197 N sing N 198 N sing Y 199 N sing Y 200 N doub N 201 N sing Y 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N sing Y 261 N doub Y 262 N doub N 263 N sing Y 264 N sing N 265 N sing Y 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub N 373 N sing Y 374 N doub N 375 N sing Y 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N doub Y 442 N sing Y 443 N sing N 444 N sing Y 445 N sing Y 446 N doub N 447 N sing Y 448 N doub N 449 N sing Y 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N doub N 461 N sing N 462 N sing N 463 N sing N 464 N sing Y 465 N doub Y 466 N sing Y 467 N sing N 468 N sing Y 469 N doub N 470 N sing Y 471 N doub N 472 N sing Y 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 425 4334 4352 10.1016/j.jmb.2013.07.009 23856622 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. 2013 10.2210/pdb4i27/pdb pdb_00004i27 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-04-01 MARMOSAIC 225 mm CCD Si(111) SINGLE WAVELENGTH M x-ray 1 0.8726 1.0 ID23-2 ESRF 0.8726 SYNCHROTRON ESRF BEAMLINE ID23-2 45704.008 DNA nucleotidylexotransferase 2.7.7.31 SEE REMARK 999 1 man polymer 1809.270 5'-D(*AP*AP*AP*AP*AP*T)-3' 1 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 466.169 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 205 nat water Terminal addition enzyme, Terminal deoxynucleotidyltransferase, TDT, Terminal transferase no no MGSSHHHHHHSSGLVPRGSHMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLA FMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMG FRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITS PEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKA IRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA MGSSHHHHHHSSGLVPRGSHMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLA FMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMG FRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITS PEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKA IRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA A polypeptide(L) no yes (DA)(DA)(DA)(DA)(DA)(2DT) AAAAAT C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample 22 372 Dntt, Tdt 10090 Mus musculus 562 Escherichia coli mouse sample 373 400 Dntt, Tdt 10090 Mus musculus 562 Escherichia coli 1 2.13 42.26 VAPOR DIFFUSION, HANGING DROP 8.0 20% PEG4000, 20% isopropanol, 100 mM sodium citrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 entity_src_gen software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Refinement description Source and taxonomy Data collection Database references Derived calculations Refinement description 1 0 2013-07-24 1 1 2013-07-31 1 2 2013-11-13 1 3 2017-07-26 1 4 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-11-21 REL REL MG MAGNESIUM ION D3T 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE NA SODIUM ION HOH water PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) ISOFORM (UNP RESIDUES 132-482, 503-530). 1JMS PDB ENTRY 1JMS PDB experimental model MG 1 3 MG MG 601 A TTP 1 4 D3T D3T 602 A NA 1 5 NA NA 603 A HOH 1 6 HOH HOH 701 A HOH 2 6 HOH HOH 702 A HOH 3 6 HOH HOH 703 A HOH 4 6 HOH HOH 704 A HOH 5 6 HOH HOH 705 A HOH 6 6 HOH HOH 706 A HOH 7 6 HOH HOH 707 A HOH 8 6 HOH HOH 708 A HOH 10 6 HOH HOH 709 A HOH 11 6 HOH HOH 710 A HOH 12 6 HOH HOH 711 A HOH 13 6 HOH HOH 712 A HOH 14 6 HOH HOH 713 A HOH 15 6 HOH HOH 714 A HOH 16 6 HOH HOH 715 A HOH 17 6 HOH HOH 716 A HOH 18 6 HOH HOH 717 A HOH 19 6 HOH HOH 718 A HOH 20 6 HOH HOH 719 A HOH 21 6 HOH HOH 720 A HOH 22 6 HOH HOH 721 A HOH 23 6 HOH HOH 722 A HOH 24 6 HOH HOH 723 A HOH 25 6 HOH HOH 724 A HOH 26 6 HOH HOH 725 A HOH 27 6 HOH HOH 726 A HOH 28 6 HOH HOH 727 A HOH 29 6 HOH HOH 728 A HOH 30 6 HOH HOH 729 A HOH 31 6 HOH HOH 730 A HOH 32 6 HOH HOH 731 A HOH 33 6 HOH HOH 732 A HOH 34 6 HOH HOH 733 A HOH 35 6 HOH HOH 734 A HOH 36 6 HOH HOH 735 A HOH 37 6 HOH HOH 736 A HOH 38 6 HOH HOH 737 A HOH 39 6 HOH HOH 738 A HOH 40 6 HOH HOH 739 A HOH 41 6 HOH HOH 740 A HOH 42 6 HOH HOH 741 A HOH 43 6 HOH HOH 742 A HOH 44 6 HOH HOH 743 A HOH 45 6 HOH HOH 744 A HOH 46 6 HOH HOH 745 A HOH 48 6 HOH HOH 746 A HOH 49 6 HOH HOH 747 A HOH 50 6 HOH HOH 748 A HOH 51 6 HOH HOH 749 A HOH 52 6 HOH HOH 750 A HOH 53 6 HOH HOH 751 A HOH 54 6 HOH HOH 752 A HOH 55 6 HOH HOH 753 A HOH 56 6 HOH HOH 754 A HOH 57 6 HOH HOH 755 A HOH 58 6 HOH HOH 756 A HOH 59 6 HOH HOH 757 A HOH 60 6 HOH HOH 758 A HOH 61 6 HOH HOH 759 A HOH 62 6 HOH HOH 760 A HOH 63 6 HOH HOH 761 A HOH 64 6 HOH HOH 762 A HOH 65 6 HOH HOH 763 A HOH 66 6 HOH HOH 764 A HOH 67 6 HOH HOH 765 A HOH 68 6 HOH HOH 766 A HOH 69 6 HOH HOH 767 A HOH 70 6 HOH HOH 768 A HOH 71 6 HOH HOH 769 A HOH 72 6 HOH HOH 770 A HOH 73 6 HOH HOH 771 A HOH 74 6 HOH HOH 772 A HOH 75 6 HOH HOH 773 A HOH 76 6 HOH HOH 774 A HOH 78 6 HOH HOH 775 A HOH 79 6 HOH HOH 776 A HOH 80 6 HOH HOH 777 A HOH 81 6 HOH HOH 778 A HOH 82 6 HOH HOH 779 A HOH 83 6 HOH HOH 780 A HOH 84 6 HOH HOH 781 A HOH 85 6 HOH HOH 782 A HOH 86 6 HOH HOH 783 A HOH 87 6 HOH HOH 784 A HOH 88 6 HOH HOH 785 A HOH 89 6 HOH HOH 786 A HOH 90 6 HOH HOH 787 A HOH 91 6 HOH HOH 788 A HOH 92 6 HOH HOH 789 A HOH 93 6 HOH HOH 790 A HOH 94 6 HOH HOH 791 A HOH 95 6 HOH HOH 792 A HOH 96 6 HOH HOH 793 A HOH 97 6 HOH HOH 794 A HOH 98 6 HOH HOH 795 A HOH 101 6 HOH HOH 796 A HOH 102 6 HOH HOH 797 A HOH 103 6 HOH HOH 798 A HOH 104 6 HOH HOH 799 A HOH 105 6 HOH HOH 800 A HOH 106 6 HOH HOH 801 A HOH 107 6 HOH HOH 802 A HOH 108 6 HOH HOH 803 A HOH 109 6 HOH HOH 804 A HOH 110 6 HOH HOH 805 A HOH 111 6 HOH HOH 806 A HOH 112 6 HOH HOH 807 A HOH 113 6 HOH HOH 808 A HOH 114 6 HOH HOH 809 A HOH 115 6 HOH HOH 810 A HOH 116 6 HOH HOH 811 A HOH 117 6 HOH HOH 812 A HOH 118 6 HOH HOH 813 A HOH 119 6 HOH HOH 814 A HOH 120 6 HOH HOH 815 A HOH 121 6 HOH HOH 816 A HOH 122 6 HOH HOH 817 A HOH 123 6 HOH HOH 818 A HOH 124 6 HOH HOH 819 A HOH 125 6 HOH HOH 820 A HOH 126 6 HOH HOH 821 A HOH 127 6 HOH HOH 822 A HOH 128 6 HOH HOH 823 A HOH 130 6 HOH HOH 824 A HOH 131 6 HOH HOH 825 A HOH 132 6 HOH HOH 826 A HOH 133 6 HOH HOH 827 A HOH 134 6 HOH HOH 828 A HOH 135 6 HOH HOH 829 A HOH 136 6 HOH HOH 830 A HOH 137 6 HOH HOH 831 A HOH 139 6 HOH HOH 832 A HOH 140 6 HOH HOH 833 A HOH 141 6 HOH HOH 834 A HOH 142 6 HOH HOH 835 A HOH 143 6 HOH HOH 836 A HOH 144 6 HOH HOH 837 A HOH 145 6 HOH HOH 838 A HOH 146 6 HOH HOH 839 A HOH 147 6 HOH HOH 840 A HOH 148 6 HOH HOH 841 A HOH 149 6 HOH HOH 842 A HOH 150 6 HOH HOH 843 A HOH 151 6 HOH HOH 844 A HOH 152 6 HOH HOH 845 A HOH 153 6 HOH HOH 846 A HOH 154 6 HOH HOH 847 A HOH 155 6 HOH HOH 848 A HOH 156 6 HOH HOH 849 A HOH 157 6 HOH HOH 850 A HOH 158 6 HOH HOH 851 A HOH 159 6 HOH HOH 852 A HOH 160 6 HOH HOH 853 A HOH 161 6 HOH HOH 854 A HOH 162 6 HOH HOH 855 A HOH 163 6 HOH HOH 856 A HOH 164 6 HOH HOH 857 A HOH 165 6 HOH HOH 858 A HOH 166 6 HOH HOH 859 A HOH 167 6 HOH HOH 860 A HOH 168 6 HOH HOH 861 A HOH 170 6 HOH HOH 862 A HOH 171 6 HOH HOH 863 A HOH 172 6 HOH HOH 864 A HOH 173 6 HOH HOH 865 A HOH 174 6 HOH HOH 866 A HOH 175 6 HOH HOH 867 A HOH 177 6 HOH HOH 868 A HOH 178 6 HOH HOH 869 A HOH 179 6 HOH HOH 870 A HOH 180 6 HOH HOH 871 A HOH 181 6 HOH HOH 872 A HOH 182 6 HOH HOH 873 A HOH 183 6 HOH HOH 874 A HOH 184 6 HOH HOH 875 A HOH 185 6 HOH HOH 876 A HOH 186 6 HOH HOH 877 A HOH 187 6 HOH HOH 878 A HOH 188 6 HOH HOH 879 A HOH 189 6 HOH HOH 880 A HOH 190 6 HOH HOH 881 A HOH 191 6 HOH HOH 882 A HOH 192 6 HOH HOH 883 A HOH 193 6 HOH HOH 884 A HOH 194 6 HOH HOH 885 A HOH 195 6 HOH HOH 886 A HOH 196 6 HOH HOH 887 A HOH 197 6 HOH HOH 888 A HOH 198 6 HOH HOH 889 A HOH 199 6 HOH HOH 890 A HOH 200 6 HOH HOH 891 A HOH 201 6 HOH HOH 892 A HOH 202 6 HOH HOH 893 A HOH 203 6 HOH HOH 894 A HOH 204 6 HOH HOH 895 A HOH 205 6 HOH HOH 896 A HOH 206 6 HOH HOH 897 A HOH 138 6 HOH HOH 101 C HOH 9 6 HOH HOH 102 C HOH 47 6 HOH HOH 103 C HOH 77 6 HOH HOH 104 C HOH 99 6 HOH HOH 105 C HOH 129 6 HOH HOH 106 C HOH 169 6 HOH HOH 107 C HOH 176 6 HOH HOH 108 C n 1 111 A n 2 112 A n 3 113 A n 4 114 A n 5 115 A n 6 116 A n 7 117 A n 8 118 A n 9 119 A n 10 120 A n 11 121 A n 12 122 A n 13 123 A n 14 124 A n 15 125 A n 16 126 A n 17 127 A n 18 128 A n 19 129 A n 20 130 A n 21 131 A n 22 132 A n 23 133 A n 24 134 A n 25 135 A n 26 136 A n 27 137 A n 28 138 A n 29 139 A n 30 140 A n 31 141 A n 32 142 A n 33 143 A n 34 144 A n 35 145 A ALA 146 n 36 ALA 146 A ALA 147 n 37 VAL 147 A ALA 148 n 38 LYS 148 A ALA 149 n 39 LYS 149 A ILE 150 n 40 ILE 150 A SER 151 n 41 SER 151 A GLN 152 n 42 GLN 152 A TYR 153 n 43 TYR 153 A ALA 154 n 44 ALA 154 A CYS 155 n 45 CYS 155 A GLN 156 n 46 GLN 156 A ARG 157 n 47 ARG 157 A ARG 158 n 48 ARG 158 A THR 159 n 49 THR 159 A THR 160 n 50 THR 160 A LEU 161 n 51 LEU 161 A ASN 162 n 52 ASN 162 A ASN 163 n 53 ASN 163 A TYR 164 n 54 TYR 164 A ASN 165 n 55 ASN 165 A GLN 166 n 56 GLN 166 A LEU 167 n 57 LEU 167 A PHE 168 n 58 PHE 168 A THR 169 n 59 THR 169 A ASP 170 n 60 ASP 170 A ALA 171 n 61 ALA 171 A LEU 172 n 62 LEU 172 A ASP 173 n 63 ASP 173 A ILE 174 n 64 ILE 174 A LEU 175 n 65 LEU 175 A ALA 176 n 66 ALA 176 A GLU 177 n 67 GLU 177 A ASN 178 n 68 ASN 178 A ASP 179 n 69 ASP 179 A GLU 180 n 70 GLU 180 A LEU 181 n 71 LEU 181 A ARG 182 n 72 ARG 182 A GLU 183 n 73 GLU 183 A ASN 184 n 74 ASN 184 A GLU 185 n 75 GLU 185 A GLY 186 n 76 GLY 186 A SER 187 n 77 SER 187 A CYS 188 n 78 CYS 188 A LEU 189 n 79 LEU 189 A ALA 190 n 80 ALA 190 A PHE 191 n 81 PHE 191 A MET 192 n 82 MET 192 A ARG 193 n 83 ARG 193 A ALA 194 n 84 ALA 194 A SER 195 n 85 SER 195 A SER 196 n 86 SER 196 A VAL 197 n 87 VAL 197 A LEU 198 n 88 LEU 198 A LYS 199 n 89 LYS 199 A SER 200 n 90 SER 200 A LEU 201 n 91 LEU 201 A PRO 202 n 92 PRO 202 A PHE 203 n 93 PHE 203 A PRO 204 n 94 PRO 204 A ILE 205 n 95 ILE 205 A THR 206 n 96 THR 206 A SER 207 n 97 SER 207 A MET 208 n 98 MET 208 A LYS 209 n 99 LYS 209 A ASP 210 n 100 ASP 210 A THR 211 n 101 THR 211 A GLU 212 n 102 GLU 212 A GLY 213 n 103 GLY 213 A ILE 214 n 104 ILE 214 A PRO 215 n 105 PRO 215 A CYS 216 n 106 CYS 216 A LEU 217 n 107 LEU 217 A GLY 218 n 108 GLY 218 A ASP 219 n 109 ASP 219 A LYS 220 n 110 LYS 220 A VAL 221 n 111 VAL 221 A LYS 222 n 112 LYS 222 A SER 223 n 113 SER 223 A ILE 224 n 114 ILE 224 A ILE 225 n 115 ILE 225 A GLU 226 n 116 GLU 226 A GLY 227 n 117 GLY 227 A ILE 228 n 118 ILE 228 A ILE 229 n 119 ILE 229 A GLU 230 n 120 GLU 230 A ASP 231 n 121 ASP 231 A GLY 232 n 122 GLY 232 A GLU 233 n 123 GLU 233 A SER 234 n 124 SER 234 A SER 235 n 125 SER 235 A GLU 236 n 126 GLU 236 A ALA 237 n 127 ALA 237 A LYS 238 n 128 LYS 238 A ALA 239 n 129 ALA 239 A VAL 240 n 130 VAL 240 A LEU 241 n 131 LEU 241 A ASN 242 n 132 ASN 242 A ASP 243 n 133 ASP 243 A GLU 244 n 134 GLU 244 A ARG 245 n 135 ARG 245 A TYR 246 n 136 TYR 246 A LYS 247 n 137 LYS 247 A SER 248 n 138 SER 248 A PHE 249 n 139 PHE 249 A LYS 250 n 140 LYS 250 A LEU 251 n 141 LEU 251 A PHE 252 n 142 PHE 252 A THR 253 n 143 THR 253 A SER 254 n 144 SER 254 A VAL 255 n 145 VAL 255 A PHE 256 n 146 PHE 256 A GLY 257 n 147 GLY 257 A VAL 258 n 148 VAL 258 A GLY 259 n 149 GLY 259 A LEU 260 n 150 LEU 260 A LYS 261 n 151 LYS 261 A THR 262 n 152 THR 262 A ALA 263 n 153 ALA 263 A GLU 264 n 154 GLU 264 A LYS 265 n 155 LYS 265 A TRP 266 n 156 TRP 266 A PHE 267 n 157 PHE 267 A ARG 268 n 158 ARG 268 A MET 269 n 159 MET 269 A GLY 270 n 160 GLY 270 A PHE 271 n 161 PHE 271 A ARG 272 n 162 ARG 272 A THR 273 n 163 THR 273 A LEU 274 n 164 LEU 274 A SER 275 n 165 SER 275 A LYS 276 n 166 LYS 276 A ILE 277 n 167 ILE 277 A GLN 278 n 168 GLN 278 A SER 279 n 169 SER 279 A ASP 280 n 170 ASP 280 A LYS 281 n 171 LYS 281 A SER 282 n 172 SER 282 A LEU 283 n 173 LEU 283 A ARG 284 n 174 ARG 284 A PHE 285 n 175 PHE 285 A THR 286 n 176 THR 286 A GLN 287 n 177 GLN 287 A MET 288 n 178 MET 288 A GLN 289 n 179 GLN 289 A LYS 290 n 180 LYS 290 A ALA 291 n 181 ALA 291 A GLY 292 n 182 GLY 292 A PHE 293 n 183 PHE 293 A LEU 294 n 184 LEU 294 A TYR 295 n 185 TYR 295 A TYR 296 n 186 TYR 296 A GLU 297 n 187 GLU 297 A ASP 298 n 188 ASP 298 A LEU 299 n 189 LEU 299 A VAL 300 n 190 VAL 300 A SER 301 n 191 SER 301 A CYS 302 n 192 CYS 302 A VAL 303 n 193 VAL 303 A ASN 304 n 194 ASN 304 A ARG 305 n 195 ARG 305 A PRO 306 n 196 PRO 306 A GLU 307 n 197 GLU 307 A ALA 308 n 198 ALA 308 A GLU 309 n 199 GLU 309 A ALA 310 n 200 ALA 310 A VAL 311 n 201 VAL 311 A SER 312 n 202 SER 312 A MET 313 n 203 MET 313 A LEU 314 n 204 LEU 314 A VAL 315 n 205 VAL 315 A LYS 316 n 206 LYS 316 A GLU 317 n 207 GLU 317 A ALA 318 n 208 ALA 318 A VAL 319 n 209 VAL 319 A VAL 320 n 210 VAL 320 A THR 321 n 211 THR 321 A PHE 322 n 212 PHE 322 A LEU 323 n 213 LEU 323 A PRO 324 n 214 PRO 324 A ASP 325 n 215 ASP 325 A ALA 326 n 216 ALA 326 A LEU 327 n 217 LEU 327 A VAL 328 n 218 VAL 328 A THR 329 n 219 THR 329 A MET 330 n 220 MET 330 A THR 331 n 221 THR 331 A GLY 332 n 222 GLY 332 A GLY 333 n 223 GLY 333 A PHE 334 n 224 PHE 334 A ARG 335 n 225 ARG 335 A ARG 336 n 226 ARG 336 A GLY 337 n 227 GLY 337 A LYS 338 n 228 LYS 338 A MET 339 n 229 MET 339 A THR 340 n 230 THR 340 A GLY 341 n 231 GLY 341 A HIS 342 n 232 HIS 342 A ASP 343 n 233 ASP 343 A VAL 344 n 234 VAL 344 A ASP 345 n 235 ASP 345 A PHE 346 n 236 PHE 346 A LEU 347 n 237 LEU 347 A ILE 348 n 238 ILE 348 A THR 349 n 239 THR 349 A SER 350 n 240 SER 350 A PRO 351 n 241 PRO 351 A GLU 352 n 242 GLU 352 A ALA 353 n 243 ALA 353 A THR 354 n 244 THR 354 A GLU 355 n 245 GLU 355 A ASP 356 n 246 ASP 356 A GLU 357 n 247 GLU 357 A GLU 358 n 248 GLU 358 A GLN 359 n 249 GLN 359 A GLN 360 n 250 GLN 360 A LEU 361 n 251 LEU 361 A LEU 362 n 252 LEU 362 A HIS 363 n 253 HIS 363 A LYS 364 n 254 LYS 364 A VAL 365 n 255 VAL 365 A THR 366 n 256 THR 366 A ASP 367 n 257 ASP 367 A PHE 368 n 258 PHE 368 A TRP 369 n 259 TRP 369 A LYS 370 n 260 LYS 370 A GLN 371 n 261 GLN 371 A GLN 372 n 262 GLN 372 A GLY 373 n 263 GLY 373 A LEU 374 n 264 LEU 374 A LEU 375 n 265 LEU 375 A LEU 376 n 266 LEU 376 A TYR 377 n 267 TYR 377 A CYS 378 n 268 CYS 378 A ASP 379 n 269 ASP 379 A ILE 380 n 270 ILE 380 A LEU 381 n 271 LEU 381 A GLU 382 n 272 GLU 382 A SER 383 n 273 SER 383 A THR 384 n 274 THR 384 A PHE 385 n 275 PHE 385 A GLU 386 n 276 GLU 386 A LYS 387 n 277 LYS 387 A PHE 388 n 278 PHE 388 A LYS 389 n 279 LYS 389 A GLN 390 n 280 GLN 390 A PRO 391 n 281 PRO 391 A SER 392 n 282 SER 392 A n 283 393 A n 284 394 A n 285 395 A n 286 396 A ALA 397 n 287 ALA 397 A LEU 398 n 288 LEU 398 A ASP 399 n 289 ASP 399 A HIS 400 n 290 HIS 400 A PHE 401 n 291 PHE 401 A GLN 402 n 292 GLN 402 A LYS 403 n 293 LYS 403 A CYS 404 n 294 CYS 404 A PHE 405 n 295 PHE 405 A LEU 406 n 296 LEU 406 A ILE 407 n 297 ILE 407 A LEU 408 n 298 LEU 408 A LYS 409 n 299 LYS 409 A LEU 410 n 300 LEU 410 A ASP 411 n 301 ASP 411 A HIS 412 n 302 HIS 412 A GLY 413 n 303 GLY 413 A ARG 414 n 304 ARG 414 A VAL 415 n 305 VAL 415 A HIS 416 n 306 HIS 416 A SER 417 n 307 SER 417 A ALA 418 n 308 GLU 418 A LYS 419 n 309 LYS 419 A SER 420 n 310 SER 420 A GLY 421 n 311 GLY 421 A GLN 422 n 312 GLN 422 A GLN 423 n 313 GLN 423 A GLU 424 n 314 GLU 424 A GLY 425 n 315 GLY 425 A LYS 426 n 316 LYS 426 A GLY 427 n 317 GLY 427 A TRP 428 n 318 TRP 428 A LYS 429 n 319 LYS 429 A ALA 430 n 320 ALA 430 A ILE 431 n 321 ILE 431 A ARG 432 n 322 ARG 432 A VAL 433 n 323 VAL 433 A ASP 434 n 324 ASP 434 A LEU 435 n 325 LEU 435 A VAL 436 n 326 VAL 436 A MET 437 n 327 MET 437 A CYS 438 n 328 CYS 438 A PRO 439 n 329 PRO 439 A TYR 440 n 330 TYR 440 A ASP 441 n 331 ASP 441 A ARG 442 n 332 ARG 442 A ARG 443 n 333 ARG 443 A ALA 444 n 334 ALA 444 A PHE 445 n 335 PHE 445 A ALA 446 n 336 ALA 446 A LEU 447 n 337 LEU 447 A LEU 448 n 338 LEU 448 A GLY 449 n 339 GLY 449 A TRP 450 n 340 TRP 450 A THR 451 n 341 THR 451 A GLY 452 n 342 GLY 452 A SER 453 n 343 SER 453 A ARG 454 n 344 ARG 454 A GLN 455 n 345 GLN 455 A PHE 456 n 346 PHE 456 A GLU 457 n 347 GLU 457 A ARG 458 n 348 ARG 458 A ASP 459 n 349 ASP 459 A LEU 460 n 350 LEU 460 A ARG 461 n 351 ARG 461 A ARG 462 n 352 ARG 462 A TYR 463 n 353 TYR 463 A ALA 464 n 354 ALA 464 A THR 465 n 355 THR 465 A HIS 466 n 356 HIS 466 A GLU 467 n 357 GLU 467 A ARG 468 n 358 ARG 468 A LYS 469 n 359 LYS 469 A MET 470 n 360 MET 470 A MET 471 n 361 MET 471 A LEU 472 n 362 LEU 472 A ASP 473 n 363 ASP 473 A ASN 474 n 364 ASN 474 A HIS 475 n 365 HIS 475 A ALA 476 n 366 ALA 476 A LEU 477 n 367 LEU 477 A TYR 478 n 368 TYR 478 A ASP 479 n 369 ASP 479 A ARG 480 n 370 ARG 480 A THR 481 n 371 THR 481 A LYS 482 n 372 LYS 482 A ARG 483 n 373 ARG 483 A VAL 484 n 374 VAL 484 A PHE 485 n 375 PHE 485 A LEU 486 n 376 LEU 486 A GLU 487 n 377 GLU 487 A ALA 488 n 378 ALA 488 A GLU 489 n 379 GLU 489 A SER 490 n 380 SER 490 A GLU 491 n 381 GLU 491 A GLU 492 n 382 GLU 492 A GLU 493 n 383 GLU 493 A ILE 494 n 384 ILE 494 A PHE 495 n 385 PHE 495 A ALA 496 n 386 ALA 496 A HIS 497 n 387 HIS 497 A LEU 498 n 388 LEU 498 A GLY 499 n 389 GLY 499 A LEU 500 n 390 LEU 500 A ASP 501 n 391 ASP 501 A TYR 502 n 392 TYR 502 A ILE 503 n 393 ILE 503 A GLU 504 n 394 GLU 504 A PRO 505 n 395 PRO 505 A TRP 506 n 396 TRP 506 A GLU 507 n 397 GLU 507 A ARG 508 n 398 ARG 508 A ASN 509 n 399 ASN 509 A ALA 510 n 400 ALA 510 A A 1 n 1 DA 1 C A 2 n 2 DA 2 C A 3 n 3 DA 3 C A 4 n 4 DA 4 C A 5 n 5 DA 5 C 2DT 6 n 6 2DT 6 C 3.0512 -3.5180 -1.9266 0.0025 1.9298 -1.5391 0.0502 0.1783 -0.0701 -0.0779 0.0621 -0.0820 -0.1165 0.2162 -0.1123 -0.0593 -0.0491 0.0006 0.0609 0.0606 -0.0562 refined 7.2976 13.4161 2.5131 X-RAY DIFFRACTION -0.8235 -0.1699 1.9269 1.9544 2.2795 2.6780 -0.0273 0.1204 -0.0138 0.1507 -0.0713 0.0360 0.1924 -0.2140 0.0985 0.0143 0.0415 -0.0142 0.0108 0.0157 -0.0576 refined 6.5254 13.1651 20.5440 X-RAY DIFFRACTION 0.2193 -0.1180 -0.0336 0.2268 0.0185 0.3717 0.0193 -0.0425 -0.0368 0.0452 -0.0269 0.0135 0.0363 -0.0208 0.0075 -0.0472 -0.0108 0.0130 0.0042 0.0145 -0.0836 refined 1.9588 -1.3477 18.9462 X-RAY DIFFRACTION 1.1874 0.8459 1.0105 0.0035 -1.5044 1.2136 0.0186 0.2435 -0.2558 0.2300 -0.0691 0.0686 0.1013 0.0096 0.0505 -0.0168 -0.0227 -0.0064 0.0584 -0.0472 -0.0966 refined -6.9029 -11.6583 14.8176 X-RAY DIFFRACTION 0.2003 -0.1407 -0.3600 1.1108 -0.0054 0.2940 -0.0434 -0.0482 -0.0273 0.0733 0.1223 0.0658 -0.0327 -0.1425 -0.0789 -0.0503 0.0028 0.0117 0.0253 -0.0071 -0.0757 refined -8.3406 4.7191 4.1635 X-RAY DIFFRACTION 2.4493 -0.5087 -0.3654 0.0000 1.8851 -0.4396 0.0030 0.0721 0.1179 0.0635 0.0562 0.3576 -0.0330 -0.1721 -0.0592 0.0333 0.0522 0.1438 0.3017 -0.0350 -0.2315 refined -11.9212 -0.4556 27.3894 X-RAY DIFFRACTION A 146 A 164 X-RAY DIFFRACTION 1 {A|146 - 164} A 166 A 195 X-RAY DIFFRACTION 2 {A|166 - 195} A 196 A 368 X-RAY DIFFRACTION 3 {A|196 - 368} A 369 A 424 X-RAY DIFFRACTION 4 {A|369 - 424} A 425 A 510 X-RAY DIFFRACTION 5 {A|425 - 510} C 1 C 6 X-RAY DIFFRACTION 6 {C|1 - 6} author_and_software_defined_assembly PISA 2 dimeric 2160 -30 18500 A THR 253 A O THR 143 1_555 A NA 603 E NA NA 1_555 A VAL 255 A O VAL 145 1_555 90.3 A THR 253 A O THR 143 1_555 A NA 603 E NA NA 1_555 A VAL 258 A O VAL 148 1_555 92.9 A VAL 255 A O VAL 145 1_555 A NA 603 E NA NA 1_555 A VAL 258 A O VAL 148 1_555 88.1 A THR 253 A O THR 143 1_555 A NA 603 E NA NA 1_555 C DA 5 B OP1 DA 5 1_555 177.5 A VAL 255 A O VAL 145 1_555 A NA 603 E NA NA 1_555 C DA 5 B OP1 DA 5 1_555 91.4 A VAL 258 A O VAL 148 1_555 A NA 603 E NA NA 1_555 C DA 5 B OP1 DA 5 1_555 89.0 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 A ASP 345 A OD2 ASP 235 1_555 94.0 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O1A D3T 1_555 93.1 A ASP 345 A OD2 ASP 235 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O1A D3T 1_555 93.7 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O2B D3T 1_555 168.0 A ASP 345 A OD2 ASP 235 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O2B D3T 1_555 97.9 A D3T 602 D O1A D3T 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O2B D3T 1_555 87.4 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O3G D3T 1_555 90.6 A ASP 345 A OD2 ASP 235 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O3G D3T 1_555 175.4 A D3T 602 D O1A D3T 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O3G D3T 1_555 85.5 A D3T 602 D O2B D3T 1_555 A MG 601 C MG MG 1_555 A D3T 602 D O3G D3T 1_555 77.5 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 99.5 A ASP 345 A OD2 ASP 235 1_555 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 99.1 A D3T 602 D O1A D3T 1_555 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 161.3 A D3T 602 D O2B D3T 1_555 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 77.4 A D3T 602 D O3G D3T 1_555 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 80.6 C 2DT 6 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE B 2DT 6 DT 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 303 A N VAL 193 A O GLY 341 A O GLY 231 A N LEU 327 A N LEU 217 A O THR 349 A O THR 239 A N ILE 348 A N ILE 238 A O VAL 436 A O VAL 326 A O ILE 431 A O ILE 321 A N LEU 408 A N LEU 298 A O LYS 403 A O LYS 293 A N LEU 381 A N LEU 271 A N MET 471 A N MET 361 A O TYR 478 A O TYR 368 A N LEU 477 A N LEU 367 A O LEU 486 A O LEU 376 1 A CG1 VAL 147 A CG1 VAL 37 1 Y 1 A CG2 VAL 147 A CG2 VAL 37 1 Y 1 A CG LYS 148 A CG LYS 38 1 Y 1 A CD LYS 148 A CD LYS 38 1 Y 1 A CE LYS 148 A CE LYS 38 1 Y 1 A NZ LYS 148 A NZ LYS 38 1 Y 1 A CG LYS 149 A CG LYS 39 1 Y 1 A CD LYS 149 A CD LYS 39 1 Y 1 A CE LYS 149 A CE LYS 39 1 Y 1 A NZ LYS 149 A NZ LYS 39 1 Y 1 A CG GLU 185 A CG GLU 75 1 Y 1 A CD GLU 185 A CD GLU 75 1 Y 1 A OE1 GLU 185 A OE1 GLU 75 1 Y 1 A OE2 GLU 185 A OE2 GLU 75 1 Y 1 A CG LYS 281 A CG LYS 171 1 Y 1 A CD LYS 281 A CD LYS 171 1 Y 1 A CE LYS 281 A CE LYS 171 1 Y 1 A NZ LYS 281 A NZ LYS 171 1 Y 1 A CG ARG 284 A CG ARG 174 1 Y 1 A CD ARG 284 A CD ARG 174 1 Y 1 A NE ARG 284 A NE ARG 174 1 Y 1 A CZ ARG 284 A CZ ARG 174 1 Y 1 A NH1 ARG 284 A NH1 ARG 174 1 Y 1 A NH2 ARG 284 A NH2 ARG 174 1 Y 1 A CG GLU 317 A CG GLU 207 1 Y 1 A CD GLU 317 A CD GLU 207 1 Y 1 A OE1 GLU 317 A OE1 GLU 207 1 Y 1 A OE2 GLU 317 A OE2 GLU 207 1 Y 1 A CG GLU 418 A CG GLU 308 1 Y 1 A CD GLU 418 A CD GLU 308 1 Y 1 A OE1 GLU 418 A OE1 GLU 308 1 Y 1 A OE2 GLU 418 A OE2 GLU 308 1 Y 1 A CG GLN 422 A CG GLN 312 1 Y 1 A CD GLN 422 A CD GLN 312 1 Y 1 A OE1 GLN 422 A OE1 GLN 312 1 Y 1 A NE2 GLN 422 A NE2 GLN 312 1 Y 1 A CG ARG 454 A CG ARG 344 1 Y 1 A CD ARG 454 A CD ARG 344 1 Y 1 A NE ARG 454 A NE ARG 344 1 Y 1 A CZ ARG 454 A CZ ARG 344 1 Y 1 A NH1 ARG 454 A NH1 ARG 344 1 Y 1 A NH2 ARG 454 A NH2 ARG 344 1 Y 1 A CG LYS 469 A CG LYS 359 1 Y 1 A CD LYS 469 A CD LYS 359 1 Y 1 A CE LYS 469 A CE LYS 359 1 Y 1 A NZ LYS 469 A NZ LYS 359 1 Y 1 A CG LYS 482 A CG LYS 372 1 Y 1 A CD LYS 482 A CD LYS 372 1 Y 1 A CE LYS 482 A CE LYS 372 1 Y 1 A NZ LYS 482 A NZ LYS 372 1 Y 1 A MET 111 A MET 1 1 Y 1 A GLY 112 A GLY 2 1 Y 1 A SER 113 A SER 3 1 Y 1 A SER 114 A SER 4 1 Y 1 A HIS 115 A HIS 5 1 Y 1 A HIS 116 A HIS 6 1 Y 1 A HIS 117 A HIS 7 1 Y 1 A HIS 118 A HIS 8 1 Y 1 A HIS 119 A HIS 9 1 Y 1 A HIS 120 A HIS 10 1 Y 1 A SER 121 A SER 11 1 Y 1 A SER 122 A SER 12 1 Y 1 A GLY 123 A GLY 13 1 Y 1 A LEU 124 A LEU 14 1 Y 1 A VAL 125 A VAL 15 1 Y 1 A PRO 126 A PRO 16 1 Y 1 A ARG 127 A ARG 17 1 Y 1 A GLY 128 A GLY 18 1 Y 1 A SER 129 A SER 19 1 Y 1 A HIS 130 A HIS 20 1 Y 1 A MET 131 A MET 21 1 Y 1 A SER 132 A SER 22 1 Y 1 A PRO 133 A PRO 23 1 Y 1 A SER 134 A SER 24 1 Y 1 A PRO 135 A PRO 25 1 Y 1 A VAL 136 A VAL 26 1 Y 1 A PRO 137 A PRO 27 1 Y 1 A GLY 138 A GLY 28 1 Y 1 A SER 139 A SER 29 1 Y 1 A GLN 140 A GLN 30 1 Y 1 A ASN 141 A ASN 31 1 Y 1 A VAL 142 A VAL 32 1 Y 1 A PRO 143 A PRO 33 1 Y 1 A ALA 144 A ALA 34 1 Y 1 A PRO 145 A PRO 35 1 Y 1 A ARG 393 A ARG 283 1 Y 1 A LYS 394 A LYS 284 1 Y 1 A VAL 395 A VAL 285 1 Y 1 A ASP 396 A ASP 286 1 Y 1 4.16 0.30 108.30 112.46 C C C O4' C1' N9 DA DA DA 1 1 1 N 1 8.38 1.20 119.70 128.08 C C C C3' O3' P DA DA DA 2 2 3 Y 1 9.79 1.20 119.70 129.49 C C C C3' O3' P DA DA DA 4 4 5 Y 1 7.27 0.30 108.30 115.57 C C C O4' C1' N9 DA DA DA 5 5 5 N 1 A THR 331 -111.99 -154.08 1 A PRO 391 -55.24 -7.21 1 A GLU 418 61.94 -20.60 1 A ASN 509 -83.02 45.41 23.25 4.7269 0.0000 2.8091 -5.9064 0.0000 1.1795 0.9216 0.8709 0.2330 0.1712 0.1741 2.60 47.95 583 12229 4.77 99.40 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.3100 PDB ENTRY 1JMS Engh & Huber 0.288 2.60 47.95 205 3225 30 121 2869 0.010 3092 HARMONIC 2.00 1.09 4198 HARMONIC 2.00 1461 SINUSOIDAL 2.00 75 HARMONIC 2.00 441 HARMONIC 5.00 3092 HARMONIC 20.00 0 SEMIHARMONIC 5.00 2.85 3.13 393 SEMIHARMONIC 5.00 3510 SEMIHARMONIC 4.00 0.3101 0.2014 0.2067 2.85 143 2756 2899 6 4.93 99.40 37.65 2.6 47.95 4I27 12246 0.137 1 3.2 99.5 0.461 2.6 2.74 2.5 1777 1 3.2 99.9 data collection ADSC Quantum phasing PHASER refinement BUSTER 2.11.2 data reduction XDS data scaling SCALA Ternary complex of mouse TdT with ssDNA and incoming nucleotide 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N A TYR 153 A TYR 43 HELX_P A ARG 157 A ARG 47 5 1 5 A ASN 165 A ASN 55 HELX_P A ARG 182 A ARG 72 1 2 18 A ASN 184 A ASN 74 HELX_P A SER 200 A SER 90 1 3 17 A SER 207 A SER 97 HELX_P A GLU 212 A GLU 102 5 4 6 A GLY 218 A GLY 108 HELX_P A GLY 232 A GLY 122 1 5 15 A SER 234 A SER 124 HELX_P A ASN 242 A ASN 132 1 6 9 A ASP 243 A ASP 133 HELX_P A SER 254 A SER 144 1 7 12 A GLY 259 A GLY 149 HELX_P A MET 269 A MET 159 1 8 11 A THR 273 A THR 163 HELX_P A ASP 280 A ASP 170 1 9 8 A THR 286 A THR 176 HELX_P A TYR 295 A TYR 185 1 10 10 A TYR 295 A TYR 185 HELX_P A SER 301 A SER 191 1 11 7 A ARG 305 A ARG 195 HELX_P A LEU 323 A LEU 213 1 12 19 A THR 331 A THR 221 HELX_P A ARG 336 A ARG 226 1 13 6 A THR 354 A THR 244 HELX_P A GLN 372 A GLN 262 1 14 19 A GLY 413 A GLY 303 HELX_P A VAL 415 A VAL 305 5 15 3 A PRO 439 A PRO 329 HELX_P A ASP 441 A ASP 331 5 16 3 A ARG 442 A ARG 332 HELX_P A GLY 452 A GLY 342 1 17 11 A SER 453 A SER 343 HELX_P A LYS 469 A LYS 359 1 18 17 A SER 490 A SER 380 HELX_P A LEU 498 A LEU 388 1 19 9 A GLU 504 A GLU 394 HELX_P A ARG 508 A ARG 398 5 20 5 covale 1.615 both C DA 5 B O3' DA 5 1_555 C 2DT 6 B P 2DT 6 1_555 metalc 2.314 A THR 253 A O THR 143 1_555 A NA 603 E NA NA 1_555 metalc 2.569 A VAL 255 A O VAL 145 1_555 A NA 603 E NA NA 1_555 metalc 2.572 A VAL 258 A O VAL 148 1_555 A NA 603 E NA NA 1_555 metalc 2.337 A ASP 343 A OD1 ASP 233 1_555 A MG 601 C MG MG 1_555 metalc 2.646 A ASP 345 A OD2 ASP 235 1_555 A MG 601 C MG MG 1_555 metalc 2.304 A MG 601 C MG MG 1_555 A D3T 602 D O1A D3T 1_555 metalc 2.622 A MG 601 C MG MG 1_555 A D3T 602 D O2B D3T 1_555 metalc 2.779 A MG 601 C MG MG 1_555 A D3T 602 D O3G D3T 1_555 metalc 2.710 A MG 601 C MG MG 1_555 A HOH 897 F O HOH 1_555 metalc 2.496 A NA 603 E NA NA 1_555 C DA 5 B OP1 DA 5 1_555 TRANSFERASE/DNA Terminal transferase, TRANSFERASE-DNA complex A GLY 452 A GLY 342 1 A SER 453 A SER 343 -0.62 TDT_MOUSE UNP 1 132 P09838 SPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDT EGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKA GFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQ QGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWT GSRQFERDLRRYATHERKMMLDNHALYDRTK TDT_MOUSE UNP 1 503 P09838 RVFLEAESEEEIFAHLGLDYIEPWERNA 4I27 PDB 2 1 4I27 AAAAA(2DT) 132 482 4I27 132 482 P09838 A 1 22 372 503 530 4I27 483 510 P09838 A 2 373 400 1 6 4I27 1 6 4I27 C 3 1 6 1 expression tag MET 111 4I27 A P09838 UNP 1 1 expression tag GLY 112 4I27 A P09838 UNP 2 1 expression tag SER 113 4I27 A P09838 UNP 3 1 expression tag SER 114 4I27 A P09838 UNP 4 1 expression tag HIS 115 4I27 A P09838 UNP 5 1 expression tag HIS 116 4I27 A P09838 UNP 6 1 expression tag HIS 117 4I27 A P09838 UNP 7 1 expression tag HIS 118 4I27 A P09838 UNP 8 1 expression tag HIS 119 4I27 A P09838 UNP 9 1 expression tag HIS 120 4I27 A P09838 UNP 10 1 expression tag SER 121 4I27 A P09838 UNP 11 1 expression tag SER 122 4I27 A P09838 UNP 12 1 expression tag GLY 123 4I27 A P09838 UNP 13 1 expression tag LEU 124 4I27 A P09838 UNP 14 1 expression tag VAL 125 4I27 A P09838 UNP 15 1 expression tag PRO 126 4I27 A P09838 UNP 16 1 expression tag ARG 127 4I27 A P09838 UNP 17 1 expression tag GLY 128 4I27 A P09838 UNP 18 1 expression tag SER 129 4I27 A P09838 UNP 19 1 expression tag HIS 130 4I27 A P09838 UNP 20 1 expression tag MET 131 4I27 A P09838 UNP 21 2 5 3 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 303 A VAL 193 A ASN 304 A ASN 194 A THR 340 A THR 230 A GLY 341 A GLY 231 A LEU 327 A LEU 217 A MET 330 A MET 220 A VAL 344 A VAL 234 A THR 349 A THR 239 A TRP 428 A TRP 318 A MET 437 A MET 327 A GLN 402 A GLN 292 A ASP 411 A ASP 301 A LEU 375 A LEU 265 A LEU 381 A LEU 271 A MET 470 A MET 360 A LEU 472 A LEU 362 A LEU 477 A LEU 367 A ASP 479 A ASP 369 A VAL 484 A VAL 374 A LEU 486 A LEU 376 BINDING SITE FOR RESIDUE MG A 601 A MG 601 Software 4 BINDING SITE FOR RESIDUE D3T A 602 A D3T 602 Software 15 BINDING SITE FOR RESIDUE NA A 603 A NA 603 Software 4 A ASP 343 A ASP 233 4 1_555 A ASP 345 A ASP 235 4 1_555 A D3T 602 D D3T 4 1_555 A HOH 897 F HOH 4 1_555 A GLY 332 A GLY 222 15 1_555 A GLY 333 A GLY 223 15 1_555 A ARG 336 A ARG 226 15 1_555 A LYS 338 A LYS 228 15 1_555 A GLY 341 A GLY 231 15 1_555 A HIS 342 A HIS 232 15 1_555 A ASP 343 A ASP 233 15 1_555 A ASP 345 A ASP 235 15 1_555 A GLY 449 A GLY 339 15 1_555 A TRP 450 A TRP 340 15 1_555 A GLY 452 A GLY 342 15 1_555 A MG 601 C MG 15 1_555 A HOH 750 F HOH 15 1_555 A HOH 865 F HOH 15 1_555 C 2DT 6 B 2DT 6 15 1_555 A THR 253 A THR 143 4 1_555 A VAL 255 A VAL 145 4 1_555 A VAL 258 A VAL 148 4 1_555 C DA 5 B DA 5 4 1_555 4 P 1 21 1