0.010611 0.006126 0.000000 0.000000 0.012252 0.000000 0.000000 0.000000 0.012184 0.00000 0.00000 0.00000 Lemke, C.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 94.243 94.243 82.075 C41 H51 N7 O9 S 817.950 (2R,6S,7E,10E,13aR,14aR,16aS)-2-{[7-methoxy-8-methyl-2-(propan-2-yloxy)quinolin-4-yl]oxy}-N-[(1-methylcyclopropyl)sulfonyl]-6-{[(1-methyl-1H-pyrazol-3-yl)carbonyl]amino}-5,16-dioxo-1,2,3,6,9,12,13,13a,14,15,16,16a-dodecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a(5H)-carboxamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 288 5673 5681 10.1074/jbc.M112.439455 23271737 Molecular Mechanism by Which a Potent Hepatitis C Virus NS3-NS4A Protease Inhibitor Overcomes Emergence of Resistance. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 VariMax-HF CCD RAYONIX SX-165mm SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 19794.834 Genome polyprotein 3.4.22.-, 3.4.21.98, 3.6.1.15, 3.6.4.13, 2.7.7.48 NS3 protease domain (UNP Residues 1027-1206) 2 man polymer 1815.277 HCV non-structural protein 4A NS3 interacting peptide (UNP Residues 1678-1691) 2 syn polymer 22.990 SODIUM ION 2 syn non-polymer 817.950 (2R,6S,7E,10E,13aR,14aR,16aS)-2-{[7-methoxy-8-methyl-2-(propan-2-yloxy)quinolin-4-yl]oxy}-N-[(1-methylcyclopropyl)sulfonyl]-6-{[(1-methyl-1H-pyrazol-3-yl)carbonyl]amino}-5,16-dioxo-1,2,3,6,9,12,13,13a,14,15,16,16a-dodecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a(5H)-carboxamide 2 syn non-polymer 18.015 water 109 nat water Core protein p21, Capsid protein C, p21, Core protein p19, Envelope glycoprotein E1, gp32, gp35, Envelope glycoprotein E2, NS1, gp68, gp70, p7, Protease NS2-3, p23, Serine protease NS3, Hepacivirin, NS3P, p70, Non-structural protein 4A, NS4A, p8, Non-structural protein 4B, NS4B, p27, Non-structural protein 5A, NS5A, p56, RNA-directed RNA polymerase, NS5B, p68 no no MAPITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVD QDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVC TRGVAKAVDFIPVESMETTMRASKKKK MAPITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVD QDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAAVC TRGVAKAVDFIPVESMETTMRASKKKK A,B polypeptide(L) no no KKGSVVIVGRIILSGRK KKGSVVIVGRIILSGRK C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HCV Isolate Japanese sample POLG_HCVJA 11116 Hepatitis C virus 562 Escherichia coli 1 2.43 49.48 VAPOR DIFFUSION, HANGING DROP 6.0 3M NaCl, 0.1M Na Citrate pH6, 2.5% t-butanol, 20mM OBG, 5mM DTT, 3mM sodium azide, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 repository Initial release Database references Database references 1 0 2013-01-02 1 1 2013-01-09 1 2 2013-03-13 RCSB Y RCSB 2012-11-23 REL REL NA SODIUM ION 1BV (2R,6S,7E,10E,13aR,14aR,16aS)-2-{[7-methoxy-8-methyl-2-(propan-2-yloxy)quinolin-4-yl]oxy}-N-[(1-methylcyclopropyl)sulfonyl]-6-{[(1-methyl-1H-pyrazol-3-yl)carbonyl]amino}-5,16-dioxo-1,2,3,6,9,12,13,13a,14,15,16,16a-dodecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecine-14a(5H)-carboxamide HOH water Chemically synthesized 11116 HCV Hepatitis C virus sample NA 1 3 NA NA 201 A INH 1 4 1BV 1BV 202 A NA 2 3 NA NA 201 B INH 2 4 1BV 1BV 202 B HOH 1 5 HOH HOH 301 A HOH 3 5 HOH HOH 302 A HOH 4 5 HOH HOH 303 A HOH 5 5 HOH HOH 304 A HOH 6 5 HOH HOH 305 A HOH 8 5 HOH HOH 306 A HOH 9 5 HOH HOH 307 A HOH 13 5 HOH HOH 308 A HOH 15 5 HOH HOH 309 A HOH 17 5 HOH HOH 310 A HOH 19 5 HOH HOH 311 A HOH 20 5 HOH HOH 312 A HOH 22 5 HOH HOH 313 A HOH 24 5 HOH HOH 314 A HOH 27 5 HOH HOH 315 A HOH 28 5 HOH HOH 316 A HOH 31 5 HOH HOH 317 A HOH 32 5 HOH HOH 318 A HOH 34 5 HOH HOH 319 A HOH 36 5 HOH HOH 320 A HOH 37 5 HOH HOH 321 A HOH 38 5 HOH HOH 322 A HOH 39 5 HOH HOH 323 A HOH 41 5 HOH HOH 324 A HOH 45 5 HOH HOH 325 A HOH 47 5 HOH HOH 326 A HOH 51 5 HOH HOH 327 A HOH 54 5 HOH HOH 328 A HOH 56 5 HOH HOH 329 A HOH 57 5 HOH HOH 330 A HOH 60 5 HOH HOH 331 A HOH 61 5 HOH HOH 332 A HOH 64 5 HOH HOH 333 A HOH 65 5 HOH HOH 334 A HOH 68 5 HOH HOH 335 A HOH 69 5 HOH HOH 336 A HOH 72 5 HOH HOH 337 A HOH 73 5 HOH HOH 338 A HOH 74 5 HOH HOH 339 A HOH 75 5 HOH HOH 340 A HOH 76 5 HOH HOH 341 A HOH 81 5 HOH HOH 342 A HOH 82 5 HOH HOH 343 A HOH 83 5 HOH HOH 344 A HOH 86 5 HOH HOH 345 A HOH 92 5 HOH HOH 346 A HOH 93 5 HOH HOH 347 A HOH 94 5 HOH HOH 348 A HOH 95 5 HOH HOH 349 A HOH 96 5 HOH HOH 350 A HOH 99 5 HOH HOH 351 A HOH 101 5 HOH HOH 352 A HOH 104 5 HOH HOH 353 A HOH 106 5 HOH HOH 354 A HOH 109 5 HOH HOH 355 A HOH 2 5 HOH HOH 301 B HOH 7 5 HOH HOH 302 B HOH 10 5 HOH HOH 303 B HOH 11 5 HOH HOH 304 B HOH 12 5 HOH HOH 305 B HOH 14 5 HOH HOH 306 B HOH 16 5 HOH HOH 307 B HOH 18 5 HOH HOH 308 B HOH 21 5 HOH HOH 309 B HOH 23 5 HOH HOH 310 B HOH 25 5 HOH HOH 311 B HOH 26 5 HOH HOH 312 B HOH 29 5 HOH HOH 313 B HOH 30 5 HOH HOH 314 B HOH 33 5 HOH HOH 315 B HOH 42 5 HOH HOH 316 B HOH 43 5 HOH HOH 317 B HOH 44 5 HOH HOH 318 B HOH 48 5 HOH HOH 319 B HOH 49 5 HOH HOH 320 B HOH 50 5 HOH HOH 321 B HOH 52 5 HOH HOH 322 B HOH 53 5 HOH HOH 323 B HOH 55 5 HOH HOH 324 B HOH 58 5 HOH HOH 325 B HOH 59 5 HOH HOH 326 B HOH 62 5 HOH HOH 327 B HOH 63 5 HOH HOH 328 B HOH 66 5 HOH HOH 329 B HOH 67 5 HOH HOH 330 B HOH 70 5 HOH HOH 331 B HOH 71 5 HOH HOH 332 B HOH 77 5 HOH HOH 333 B HOH 78 5 HOH HOH 334 B HOH 79 5 HOH HOH 335 B HOH 80 5 HOH HOH 336 B HOH 84 5 HOH HOH 337 B HOH 85 5 HOH HOH 338 B HOH 87 5 HOH HOH 339 B HOH 88 5 HOH HOH 340 B HOH 89 5 HOH HOH 341 B HOH 90 5 HOH HOH 342 B HOH 91 5 HOH HOH 343 B HOH 97 5 HOH HOH 344 B HOH 98 5 HOH HOH 345 B HOH 100 5 HOH HOH 346 B HOH 102 5 HOH HOH 347 B HOH 103 5 HOH HOH 348 B HOH 107 5 HOH HOH 349 B HOH 108 5 HOH HOH 350 B HOH 35 5 HOH HOH 301 C HOH 46 5 HOH HOH 302 C HOH 105 5 HOH HOH 303 C HOH 40 5 HOH HOH 301 D n 1 0 A ALA 1 n 2 ALA 1 A PRO 2 n 3 PRO 2 A ILE 3 n 4 ILE 3 A THR 4 n 5 THR 4 A ALA 5 n 6 ALA 5 A TYR 6 n 7 TYR 6 A SER 7 n 8 SER 7 A GLN 8 n 9 GLN 8 A GLN 9 n 10 GLN 9 A THR 10 n 11 THR 10 A ARG 11 n 12 ARG 11 A GLY 12 n 13 GLY 12 A LEU 13 n 14 LEU 13 A LEU 14 n 15 LEU 14 A GLY 15 n 16 GLY 15 A CYS 16 n 17 CYS 16 A ILE 17 n 18 ILE 17 A ILE 18 n 19 ILE 18 A THR 19 n 20 THR 19 A SER 20 n 21 SER 20 A LEU 21 n 22 LEU 21 A THR 22 n 23 THR 22 A GLY 23 n 24 GLY 23 A ARG 24 n 25 ARG 24 A ASP 25 n 26 ASP 25 A LYS 26 n 27 LYS 26 A ASN 27 n 28 ASN 27 A GLN 28 n 29 GLN 28 A VAL 29 n 30 VAL 29 A ASP 30 n 31 ASP 30 A GLY 31 n 32 GLY 31 A GLU 32 n 33 GLU 32 A VAL 33 n 34 VAL 33 A GLN 34 n 35 GLN 34 A VAL 35 n 36 VAL 35 A LEU 36 n 37 LEU 36 A SER 37 n 38 SER 37 A THR 38 n 39 THR 38 A ALA 39 n 40 ALA 39 A THR 40 n 41 THR 40 A GLN 41 n 42 GLN 41 A SER 42 n 43 SER 42 A PHE 43 n 44 PHE 43 A LEU 44 n 45 LEU 44 A ALA 45 n 46 ALA 45 A THR 46 n 47 THR 46 A CYS 47 n 48 CYS 47 A VAL 48 n 49 VAL 48 A ASN 49 n 50 ASN 49 A GLY 50 n 51 GLY 50 A VAL 51 n 52 VAL 51 A CYS 52 n 53 CYS 52 A TRP 53 n 54 TRP 53 A THR 54 n 55 THR 54 A VAL 55 n 56 VAL 55 A TYR 56 n 57 TYR 56 A HIS 57 n 58 HIS 57 A GLY 58 n 59 GLY 58 A ALA 59 n 60 ALA 59 A GLY 60 n 61 GLY 60 A SER 61 n 62 SER 61 A LYS 62 n 63 LYS 62 A THR 63 n 64 THR 63 A LEU 64 n 65 LEU 64 A ALA 65 n 66 ALA 65 A GLY 66 n 67 GLY 66 A PRO 67 n 68 PRO 67 A LYS 68 n 69 LYS 68 A GLY 69 n 70 GLY 69 A PRO 70 n 71 PRO 70 A ILE 71 n 72 ILE 71 A THR 72 n 73 THR 72 A GLN 73 n 74 GLN 73 A MET 74 n 75 MET 74 A TYR 75 n 76 TYR 75 A THR 76 n 77 THR 76 A ASN 77 n 78 ASN 77 A VAL 78 n 79 VAL 78 A ASP 79 n 80 ASP 79 A GLN 80 n 81 GLN 80 A ASP 81 n 82 ASP 81 A LEU 82 n 83 LEU 82 A VAL 83 n 84 VAL 83 A GLY 84 n 85 GLY 84 A TRP 85 n 86 TRP 85 A PRO 86 n 87 PRO 86 A ALA 87 n 88 ALA 87 A PRO 88 n 89 PRO 88 A PRO 89 n 90 PRO 89 A GLY 90 n 91 GLY 90 A ALA 91 n 92 ALA 91 A ARG 92 n 93 ARG 92 A SER 93 n 94 SER 93 A MET 94 n 95 MET 94 A THR 95 n 96 THR 95 A PRO 96 n 97 PRO 96 A CYS 97 n 98 CYS 97 A THR 98 n 99 THR 98 A CYS 99 n 100 CYS 99 A GLY 100 n 101 GLY 100 A SER 101 n 102 SER 101 A SER 102 n 103 SER 102 A ASP 103 n 104 ASP 103 A LEU 104 n 105 LEU 104 A TYR 105 n 106 TYR 105 A LEU 106 n 107 LEU 106 A VAL 107 n 108 VAL 107 A THR 108 n 109 THR 108 A ARG 109 n 110 ARG 109 A HIS 110 n 111 HIS 110 A ALA 111 n 112 ALA 111 A ASP 112 n 113 ASP 112 A VAL 113 n 114 VAL 113 A ILE 114 n 115 ILE 114 A PRO 115 n 116 PRO 115 A VAL 116 n 117 VAL 116 A ARG 117 n 118 ARG 117 A ARG 118 n 119 ARG 118 A ARG 119 n 120 ARG 119 A GLY 120 n 121 GLY 120 A ASP 121 n 122 ASP 121 A SER 122 n 123 SER 122 A ARG 123 n 124 ARG 123 A GLY 124 n 125 GLY 124 A SER 125 n 126 SER 125 A LEU 126 n 127 LEU 126 A LEU 127 n 128 LEU 127 A SER 128 n 129 SER 128 A PRO 129 n 130 PRO 129 A ARG 130 n 131 ARG 130 A PRO 131 n 132 PRO 131 A VAL 132 n 133 VAL 132 A SER 133 n 134 SER 133 A TYR 134 n 135 TYR 134 A LEU 135 n 136 LEU 135 A LYS 136 n 137 LYS 136 A GLY 137 n 138 GLY 137 A SER 138 n 139 SER 138 A SER 139 n 140 SER 139 A GLY 140 n 141 GLY 140 A GLY 141 n 142 GLY 141 A PRO 142 n 143 PRO 142 A LEU 143 n 144 LEU 143 A LEU 144 n 145 LEU 144 A CYS 145 n 146 CYS 145 A PRO 146 n 147 PRO 146 A SER 147 n 148 SER 147 A GLY 148 n 149 GLY 148 A HIS 149 n 150 HIS 149 A VAL 150 n 151 VAL 150 A VAL 151 n 152 VAL 151 A GLY 152 n 153 GLY 152 A ILE 153 n 154 ILE 153 A PHE 154 n 155 PHE 154 A ARG 155 n 156 ARG 155 A ALA 156 n 157 ALA 156 A ALA 157 n 158 ALA 157 A VAL 158 n 159 VAL 158 A CYS 159 n 160 CYS 159 A THR 160 n 161 THR 160 A ARG 161 n 162 ARG 161 A GLY 162 n 163 GLY 162 A VAL 163 n 164 VAL 163 A ALA 164 n 165 ALA 164 A LYS 165 n 166 LYS 165 A ALA 166 n 167 ALA 166 A VAL 167 n 168 VAL 167 A ASP 168 n 169 ASP 168 A PHE 169 n 170 PHE 169 A ILE 170 n 171 ILE 170 A PRO 171 n 172 PRO 171 A VAL 172 n 173 VAL 172 A GLU 173 n 174 GLU 173 A SER 174 n 175 SER 174 A MET 175 n 176 MET 175 A GLU 176 n 177 GLU 176 A THR 177 n 178 THR 177 A THR 178 n 179 THR 178 A MET 179 n 180 MET 179 A ALA 180 n 181 ARG 180 A ALA 181 n 182 ALA 181 A ALA 182 n 183 SER 182 A n 184 183 A n 185 184 A n 186 185 A n 187 186 A n 1 0 B ALA 1 n 2 ALA 1 B PRO 2 n 3 PRO 2 B ILE 3 n 4 ILE 3 B THR 4 n 5 THR 4 B ALA 5 n 6 ALA 5 B TYR 6 n 7 TYR 6 B SER 7 n 8 SER 7 B GLN 8 n 9 GLN 8 B GLN 9 n 10 GLN 9 B THR 10 n 11 THR 10 B ARG 11 n 12 ARG 11 B GLY 12 n 13 GLY 12 B LEU 13 n 14 LEU 13 B LEU 14 n 15 LEU 14 B GLY 15 n 16 GLY 15 B CYS 16 n 17 CYS 16 B ILE 17 n 18 ILE 17 B ILE 18 n 19 ILE 18 B THR 19 n 20 THR 19 B SER 20 n 21 SER 20 B LEU 21 n 22 LEU 21 B THR 22 n 23 THR 22 B GLY 23 n 24 GLY 23 B ARG 24 n 25 ARG 24 B ASP 25 n 26 ASP 25 B LYS 26 n 27 LYS 26 B ASN 27 n 28 ASN 27 B GLN 28 n 29 GLN 28 B VAL 29 n 30 VAL 29 B ASP 30 n 31 ASP 30 B GLY 31 n 32 GLY 31 B GLU 32 n 33 GLU 32 B VAL 33 n 34 VAL 33 B GLN 34 n 35 GLN 34 B VAL 35 n 36 VAL 35 B LEU 36 n 37 LEU 36 B SER 37 n 38 SER 37 B THR 38 n 39 THR 38 B ALA 39 n 40 ALA 39 B THR 40 n 41 THR 40 B GLN 41 n 42 GLN 41 B SER 42 n 43 SER 42 B PHE 43 n 44 PHE 43 B LEU 44 n 45 LEU 44 B ALA 45 n 46 ALA 45 B THR 46 n 47 THR 46 B CYS 47 n 48 CYS 47 B VAL 48 n 49 VAL 48 B ASN 49 n 50 ASN 49 B GLY 50 n 51 GLY 50 B VAL 51 n 52 VAL 51 B CYS 52 n 53 CYS 52 B TRP 53 n 54 TRP 53 B THR 54 n 55 THR 54 B VAL 55 n 56 VAL 55 B TYR 56 n 57 TYR 56 B HIS 57 n 58 HIS 57 B GLY 58 n 59 GLY 58 B ALA 59 n 60 ALA 59 B GLY 60 n 61 GLY 60 B SER 61 n 62 SER 61 B LYS 62 n 63 LYS 62 B THR 63 n 64 THR 63 B LEU 64 n 65 LEU 64 B ALA 65 n 66 ALA 65 B GLY 66 n 67 GLY 66 B PRO 67 n 68 PRO 67 B LYS 68 n 69 LYS 68 B GLY 69 n 70 GLY 69 B PRO 70 n 71 PRO 70 B ILE 71 n 72 ILE 71 B THR 72 n 73 THR 72 B GLN 73 n 74 GLN 73 B MET 74 n 75 MET 74 B TYR 75 n 76 TYR 75 B THR 76 n 77 THR 76 B ASN 77 n 78 ASN 77 B VAL 78 n 79 VAL 78 B ASP 79 n 80 ASP 79 B GLN 80 n 81 GLN 80 B ASP 81 n 82 ASP 81 B LEU 82 n 83 LEU 82 B VAL 83 n 84 VAL 83 B GLY 84 n 85 GLY 84 B TRP 85 n 86 TRP 85 B PRO 86 n 87 PRO 86 B ALA 87 n 88 ALA 87 B PRO 88 n 89 PRO 88 B PRO 89 n 90 PRO 89 B GLY 90 n 91 GLY 90 B ALA 91 n 92 ALA 91 B ARG 92 n 93 ARG 92 B SER 93 n 94 SER 93 B MET 94 n 95 MET 94 B THR 95 n 96 THR 95 B PRO 96 n 97 PRO 96 B CYS 97 n 98 CYS 97 B THR 98 n 99 THR 98 B CYS 99 n 100 CYS 99 B GLY 100 n 101 GLY 100 B SER 101 n 102 SER 101 B SER 102 n 103 SER 102 B ASP 103 n 104 ASP 103 B LEU 104 n 105 LEU 104 B TYR 105 n 106 TYR 105 B LEU 106 n 107 LEU 106 B VAL 107 n 108 VAL 107 B THR 108 n 109 THR 108 B ARG 109 n 110 ARG 109 B HIS 110 n 111 HIS 110 B ALA 111 n 112 ALA 111 B ASP 112 n 113 ASP 112 B VAL 113 n 114 VAL 113 B ILE 114 n 115 ILE 114 B PRO 115 n 116 PRO 115 B VAL 116 n 117 VAL 116 B ARG 117 n 118 ARG 117 B ARG 118 n 119 ARG 118 B ARG 119 n 120 ARG 119 B GLY 120 n 121 GLY 120 B ASP 121 n 122 ASP 121 B SER 122 n 123 SER 122 B ARG 123 n 124 ARG 123 B GLY 124 n 125 GLY 124 B SER 125 n 126 SER 125 B LEU 126 n 127 LEU 126 B LEU 127 n 128 LEU 127 B SER 128 n 129 SER 128 B PRO 129 n 130 PRO 129 B ARG 130 n 131 ARG 130 B PRO 131 n 132 PRO 131 B VAL 132 n 133 VAL 132 B SER 133 n 134 SER 133 B TYR 134 n 135 TYR 134 B LEU 135 n 136 LEU 135 B LYS 136 n 137 LYS 136 B GLY 137 n 138 GLY 137 B SER 138 n 139 SER 138 B SER 139 n 140 SER 139 B GLY 140 n 141 GLY 140 B GLY 141 n 142 GLY 141 B PRO 142 n 143 PRO 142 B LEU 143 n 144 LEU 143 B LEU 144 n 145 LEU 144 B CYS 145 n 146 CYS 145 B PRO 146 n 147 PRO 146 B SER 147 n 148 SER 147 B GLY 148 n 149 GLY 148 B HIS 149 n 150 HIS 149 B VAL 150 n 151 VAL 150 B VAL 151 n 152 VAL 151 B GLY 152 n 153 GLY 152 B ILE 153 n 154 ILE 153 B PHE 154 n 155 PHE 154 B ARG 155 n 156 ARG 155 B ALA 156 n 157 ALA 156 B ALA 157 n 158 ALA 157 B VAL 158 n 159 VAL 158 B CYS 159 n 160 CYS 159 B THR 160 n 161 THR 160 B ARG 161 n 162 ARG 161 B GLY 162 n 163 GLY 162 B VAL 163 n 164 VAL 163 B ALA 164 n 165 ALA 164 B LYS 165 n 166 LYS 165 B ALA 166 n 167 ALA 166 B VAL 167 n 168 VAL 167 B ASP 168 n 169 ASP 168 B PHE 169 n 170 PHE 169 B ILE 170 n 171 ILE 170 B PRO 171 n 172 PRO 171 B VAL 172 n 173 VAL 172 B GLU 173 n 174 GLU 173 B SER 174 n 175 SER 174 B MET 175 n 176 MET 175 B GLU 176 n 177 GLU 176 B THR 177 n 178 THR 177 B THR 178 n 179 THR 178 B MET 179 n 180 MET 179 B ALA 180 n 181 ARG 180 B ALA 181 n 182 ALA 181 B ALA 182 n 183 SER 182 B n 184 183 B n 185 184 B n 186 185 B n 187 186 B n 1 219 C GLY 220 n 2 LYS 220 C GLY 221 n 3 GLY 221 C SER 222 n 4 SER 222 C VAL 223 n 5 VAL 223 C VAL 224 n 6 VAL 224 C ILE 225 n 7 ILE 225 C VAL 226 n 8 VAL 226 C GLY 227 n 9 GLY 227 C ARG 228 n 10 ARG 228 C ILE 229 n 11 ILE 229 C ILE 230 n 12 ILE 230 C LEU 231 n 13 LEU 231 C SER 232 n 14 SER 232 C n 15 233 C n 16 234 C n 17 235 C n 1 219 D GLY 220 n 2 LYS 220 D GLY 221 n 3 GLY 221 D SER 222 n 4 SER 222 D VAL 223 n 5 VAL 223 D VAL 224 n 6 VAL 224 D ILE 225 n 7 ILE 225 D VAL 226 n 8 VAL 226 D GLY 227 n 9 GLY 227 D ARG 228 n 10 ARG 228 D ILE 229 n 11 ILE 229 D ILE 230 n 12 ILE 230 D LEU 231 n 13 LEU 231 D SER 232 n 14 SER 232 D n 15 233 D n 16 234 D n 17 235 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 2520 -21 8980 2500 -21 8990 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 A ALA 5 A O ALA 6 1_555 86.5 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 A HOH 306 I O HOH 1_555 96.1 A ALA 5 A O ALA 6 1_555 A NA 201 E NA NA 1_555 A HOH 306 I O HOH 1_555 79.3 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 A HOH 325 I O HOH 1_555 98.4 A ALA 5 A O ALA 6 1_555 A NA 201 E NA NA 1_555 A HOH 325 I O HOH 1_555 169.6 A HOH 306 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 325 I O HOH 1_555 91.1 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 A HOH 327 I O HOH 1_555 155.9 A ALA 5 A O ALA 6 1_555 A NA 201 E NA NA 1_555 A HOH 327 I O HOH 1_555 71.2 A HOH 306 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 327 I O HOH 1_555 88.7 A HOH 325 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 327 I O HOH 1_555 105.1 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 100.0 A ALA 5 A O ALA 6 1_555 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 84.9 A HOH 306 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 156.6 A HOH 325 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 103.1 A HOH 327 I O HOH 1_555 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 69.9 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 B ALA 5 B O ALA 6 1_555 87.2 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 B HOH 331 J O HOH 1_555 87.7 B ALA 5 B O ALA 6 1_555 B NA 201 G NA NA 1_555 B HOH 331 J O HOH 1_555 173.6 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 B HOH 308 J O HOH 1_555 97.6 B ALA 5 B O ALA 6 1_555 B NA 201 G NA NA 1_555 B HOH 308 J O HOH 1_555 80.7 B HOH 331 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 308 J O HOH 1_555 96.1 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 B HOH 328 J O HOH 1_555 159.3 B ALA 5 B O ALA 6 1_555 B NA 201 G NA NA 1_555 B HOH 328 J O HOH 1_555 77.7 B HOH 331 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 328 J O HOH 1_555 108.2 B HOH 308 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 328 J O HOH 1_555 93.9 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 102.1 B ALA 5 B O ALA 6 1_555 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 88.7 B HOH 331 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 96.2 B HOH 308 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 157.1 B HOH 328 J O HOH 1_555 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 63.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 6 A N TYR 7 C O ILE 230 C O ILE 12 C O ILE 229 C O ILE 11 A N VAL 33 A N VAL 34 A N LEU 36 A N LEU 37 A O PHE 43 A O PHE 44 A N THR 46 A N THR 47 A O TRP 53 A O TRP 54 A N CYS 52 A N CYS 53 A O TRP 85 A O TRP 86 A O LEU 82 A O LEU 83 A N ASN 77 A N ASN 78 A N LEU 106 A N LEU 107 A O ILE 114 A O ILE 115 A N ARG 117 A N ARG 118 A O SER 125 A O SER 126 A N ARG 130 A N ARG 131 A O ALA 164 A O ALA 165 A O ASP 168 A O ASP 169 A N ALA 156 A N ALA 157 A O VAL 151 A O VAL 152 A N LEU 143 A N LEU 144 A O LEU 144 A O LEU 145 A N TYR 105 A N TYR 106 B N TYR 6 B N TYR 7 D O ILE 230 D O ILE 12 D O GLY 227 D O GLY 9 B N VAL 35 B N VAL 36 B N LEU 36 B N LEU 37 B O PHE 43 B O PHE 44 B N THR 46 B N THR 47 B O TRP 53 B O TRP 54 B N CYS 52 B N CYS 53 B O TRP 85 B O TRP 86 B O LEU 82 B O LEU 83 B N ASN 77 B N ASN 78 B N LEU 104 B N LEU 105 B O VAL 116 B O VAL 117 B N ARG 117 B N ARG 118 B O SER 125 B O SER 126 B N GLY 124 B N GLY 125 B O VAL 167 B O VAL 168 B O ASP 168 B O ASP 169 B N ALA 156 B N ALA 157 B O VAL 151 B O VAL 152 B N LEU 143 B N LEU 144 B O LEU 144 B O LEU 145 B N TYR 105 B N TYR 106 1 A CG ARG 180 A CG ARG 181 1 Y 1 A CD ARG 180 A CD ARG 181 1 Y 1 A NE ARG 180 A NE ARG 181 1 Y 1 A CZ ARG 180 A CZ ARG 181 1 Y 1 A NH1 ARG 180 A NH1 ARG 181 1 Y 1 A NH2 ARG 180 A NH2 ARG 181 1 Y 1 A OG SER 182 A OG SER 183 1 Y 1 B CG ARG 180 B CG ARG 181 1 Y 1 B CD ARG 180 B CD ARG 181 1 Y 1 B NE ARG 180 B NE ARG 181 1 Y 1 B CZ ARG 180 B CZ ARG 181 1 Y 1 B NH1 ARG 180 B NH1 ARG 181 1 Y 1 B NH2 ARG 180 B NH2 ARG 181 1 Y 1 B OG SER 182 B OG SER 183 1 Y 1 C CB LYS 220 C CB LYS 2 1 Y 1 C CG LYS 220 C CG LYS 2 1 Y 1 C CD LYS 220 C CD LYS 2 1 Y 1 C CE LYS 220 C CE LYS 2 1 Y 1 C NZ LYS 220 C NZ LYS 2 1 Y 1 D CB LYS 220 D CB LYS 2 1 Y 1 D CG LYS 220 D CG LYS 2 1 Y 1 D CD LYS 220 D CD LYS 2 1 Y 1 D CE LYS 220 D CE LYS 2 1 Y 1 D NZ LYS 220 D NZ LYS 2 1 Y 1 A MET 0 A MET 1 1 Y 1 A LYS 183 A LYS 184 1 Y 1 A LYS 184 A LYS 185 1 Y 1 A LYS 185 A LYS 186 1 Y 1 A LYS 186 A LYS 187 1 Y 1 B MET 0 B MET 1 1 Y 1 B LYS 183 B LYS 184 1 Y 1 B LYS 184 B LYS 185 1 Y 1 B LYS 185 B LYS 186 1 Y 1 B LYS 186 B LYS 187 1 Y 1 C LYS 219 C LYS 1 1 Y 1 C GLY 233 C GLY 15 1 Y 1 C ARG 234 C ARG 16 1 Y 1 C LYS 235 C LYS 17 1 Y 1 D LYS 219 D LYS 1 1 Y 1 D GLY 233 D GLY 15 1 Y 1 D ARG 234 D ARG 16 1 Y 1 D LYS 235 D LYS 17 1 Y 1 B B THR CYS 98 99 -45.20 1 B CYS 99 -136.48 -78.88 -2.5977 -0.0000 0.0000 -2.5977 0.0000 5.1953 0.2470 0.2159 0.2175 1.9301 36.541 1557 30772 5.06 98.69 0.34 1 0.00 MOLECULAR REPLACEMENT 25.39 0.83 1.10 ML FLAT BULK SOLVENT MODEL 55.828 0.411 1.9301 36.541 109 3061 118 0 2834 0.008 3030 1.374 4145 15.175 1095 0.087 483 0.006 522 0.4339 0.3725 1.9924 137 2540 95.00 0.3224 0.3287 2.0636 145 2586 97.00 0.3157 0.2913 2.1462 152 2614 98.00 0.2899 0.2582 2.2439 134 2661 99.00 0.2761 0.2401 2.3622 132 2669 99.00 0.2936 0.2461 2.5101 133 2655 99.00 0.2850 0.2395 2.7039 140 2686 100.00 0.2273 0.2190 2.9759 149 2681 100.00 0.2710 0.2025 3.4062 162 2683 100.00 0.2290 0.1916 4.2904 139 2713 100.00 0.2028 0.1979 36.5474 134 2727 99.00 1.93 57.9 4I31 31178 31114 0.040 1 14.6 4.56 99.8 .317 1.93 2.0 3.9 3068 1 3.86 99.8 data collection MAR345dtb model building PHENIX refinement PHENIX (phenix.refine: 1.7_650) data reduction d*TREK data scaling d*TREK phasing PHENIX Genome polyprotein (E.C.3.4.22.-, 3.4.21.98, 3.6.1.15, 3.6.4.13, 2.7.7.48), HCV non-structural protein 4A Crystal structure of HCV NS3/NS4A protease complexed with compound 4 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N A GLY 12 A GLY 13 HELX_P A GLY 23 A GLY 24 1 1 12 A TYR 56 A TYR 57 HELX_P A GLY 60 A GLY 61 1 2 5 A VAL 132 A VAL 133 HELX_P A LYS 136 A LYS 137 1 3 5 A VAL 172 A VAL 173 HELX_P A SER 182 A SER 183 1 4 11 B GLY 12 B GLY 13 HELX_P B GLY 23 B GLY 24 1 5 12 B TYR 56 B TYR 57 HELX_P B GLY 60 B GLY 61 1 6 5 B VAL 132 B VAL 133 HELX_P B LYS 136 B LYS 137 1 7 5 B VAL 172 B VAL 173 HELX_P B ARG 180 B ARG 181 1 8 9 disulf 2.060 A CYS 47 A SG CYS 48 1_555 A CYS 52 A SG CYS 53 1_555 disulf 2.027 A CYS 97 A SG CYS 98 1_555 A CYS 145 A SG CYS 146 1_555 disulf 2.050 B CYS 47 B SG CYS 48 1_555 B CYS 52 B SG CYS 53 1_555 metalc 2.573 A ALA 111 A O ALA 112 1_555 A NA 201 E NA NA 1_555 metalc 2.598 B ALA 111 B O ALA 112 1_555 B NA 201 G NA NA 1_555 metalc 2.602 B ALA 5 B O ALA 6 1_555 B NA 201 G NA NA 1_555 metalc 2.627 A ALA 5 A O ALA 6 1_555 A NA 201 E NA NA 1_555 metalc 2.707 B NA 201 G NA NA 1_555 B HOH 331 J O HOH 1_555 metalc 2.710 A NA 201 E NA NA 1_555 A HOH 306 I O HOH 1_555 metalc 2.729 B NA 201 G NA NA 1_555 B HOH 308 J O HOH 1_555 metalc 2.773 B NA 201 G NA NA 1_555 B HOH 328 J O HOH 1_555 metalc 2.814 B NA 201 G NA NA 1_555 B HOH 320 J O HOH 1_555 metalc 2.839 A NA 201 E NA NA 1_555 A HOH 325 I O HOH 1_555 metalc 2.879 A NA 201 E NA NA 1_555 A HOH 327 I O HOH 1_555 metalc 2.900 A NA 201 E NA NA 1_555 A HOH 340 I O HOH 1_555 Hydrolase/Hydrolase inhibitor Hepatitis C Virus, NS3, NS4A, protein-inhibitor complex compound 4, serine protease, Hydrolase-Hydrolase inhibitor complex A ALA 1 A ALA 2 1 A PRO 2 A PRO 3 -11.66 B ALA 1 B ALA 2 1 B PRO 2 B PRO 3 -5.18 POLG_HCVJA UNP 1 1027 P26662 APITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQ DLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCT RGVAKAVDFIPVESMETTMRS POLG_HCVJA UNP 2 1678 P26662 GSVVIVGRIILSGR 1027 1207 4I31 1 182 P26662 A 1 2 183 1027 1207 4I31 1 182 P26662 B 1 2 183 1678 1691 4I31 221 234 P26662 C 2 3 16 1678 1691 4I31 221 234 P26662 D 2 3 16 1 EXPRESSION TAG MET 0 4I31 A P26662 UNP 1 1 VAL CONFLICT ILE 114 4I31 A P26662 UNP 1140 115 1 ILE CONFLICT VAL 132 4I31 A P26662 UNP 1158 133 1 EXPRESSION TAG ALA 181 4I31 A P26662 UNP 182 1 EXPRESSION TAG LYS 183 4I31 A P26662 UNP 184 1 EXPRESSION TAG LYS 184 4I31 A P26662 UNP 185 1 EXPRESSION TAG LYS 185 4I31 A P26662 UNP 186 1 EXPRESSION TAG LYS 186 4I31 A P26662 UNP 187 2 EXPRESSION TAG MET 0 4I31 B P26662 UNP 1 2 VAL CONFLICT ILE 114 4I31 B P26662 UNP 1140 115 2 ILE CONFLICT VAL 132 4I31 B P26662 UNP 1158 133 2 EXPRESSION TAG ALA 181 4I31 B P26662 UNP 182 2 EXPRESSION TAG LYS 183 4I31 B P26662 UNP 184 2 EXPRESSION TAG LYS 184 4I31 B P26662 UNP 185 2 EXPRESSION TAG LYS 185 4I31 B P26662 UNP 186 2 EXPRESSION TAG LYS 186 4I31 B P26662 UNP 187 3 INSERTION LYS 219 4I31 C P26662 UNP 1 3 INSERTION LYS 220 4I31 C P26662 UNP 2 3 INSERTION LYS 235 4I31 C P26662 UNP 17 4 INSERTION LYS 219 4I31 D P26662 UNP 1 4 INSERTION LYS 220 4I31 D P26662 UNP 2 4 INSERTION LYS 235 4I31 D P26662 UNP 17 7 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 5 A ALA 6 A GLN 9 A GLN 10 C VAL 224 C VAL 6 C LEU 231 C LEU 13 A VAL 33 A VAL 34 A SER 37 A SER 38 A SER 42 A SER 43 A VAL 48 A VAL 49 A VAL 51 A VAL 52 A VAL 55 A VAL 56 A LEU 82 A LEU 83 A PRO 86 A PRO 87 A TYR 75 A TYR 76 A ASN 77 A ASN 78 A ASP 103 A ASP 104 A VAL 107 A VAL 108 A VAL 113 A VAL 114 A ARG 118 A ARG 119 A ARG 123 A ARG 124 A PRO 131 A PRO 132 A VAL 163 A VAL 164 A PRO 171 A PRO 172 A VAL 150 A VAL 151 A THR 160 A THR 161 A PRO 142 A PRO 143 A LEU 144 A LEU 145 A ASP 103 A ASP 104 A VAL 107 A VAL 108 B THR 4 B THR 5 B GLN 9 B GLN 10 D VAL 224 D VAL 6 D SER 232 D SER 14 B VAL 33 B VAL 34 B SER 37 B SER 38 B SER 42 B SER 43 B VAL 48 B VAL 49 B VAL 51 B VAL 52 B VAL 55 B VAL 56 B LEU 82 B LEU 83 B PRO 86 B PRO 87 B TYR 75 B TYR 76 B ASN 77 B ASN 78 B ASP 103 B ASP 104 B VAL 107 B VAL 108 B VAL 113 B VAL 114 B ARG 118 B ARG 119 B ARG 123 B ARG 124 B PRO 131 B PRO 132 B VAL 163 B VAL 164 B PRO 171 B PRO 172 B VAL 150 B VAL 151 B THR 160 B THR 161 B PRO 142 B PRO 143 B LEU 144 B LEU 145 B ASP 103 B ASP 104 B VAL 107 B VAL 108 BINDING SITE FOR RESIDUE NA A 201 Software 6 BINDING SITE FOR RESIDUE 1BV A 202 Software 22 BINDING SITE FOR RESIDUE NA B 201 Software 6 BINDING SITE FOR RESIDUE 1BV B 202 Software 23 A ALA 5 A ALA 6 6 1_555 A ALA 111 A ALA 112 6 1_555 A HOH 306 I HOH 6 1_555 A HOH 325 I HOH 6 1_555 A HOH 327 I HOH 6 1_555 A HOH 340 I HOH 6 1_555 A GLN 41 A GLN 42 22 1_555 A SER 42 A SER 43 22 1_555 A PHE 43 A PHE 44 22 1_555 A TYR 56 A TYR 57 22 1_555 A HIS 57 A HIS 58 22 1_555 A GLY 58 A GLY 59 22 1_555 A VAL 78 A VAL 79 22 1_555 A ASP 79 A ASP 80 22 1_555 A ASP 81 A ASP 82 22 1_555 A ARG 123 A ARG 124 22 1_555 A VAL 132 A VAL 133 22 1_555 A LEU 135 A LEU 136 22 1_555 A LYS 136 A LYS 137 22 1_555 A GLY 137 A GLY 138 22 1_555 A SER 138 A SER 139 22 1_555 A SER 139 A SER 140 22 1_555 A PHE 154 A PHE 155 22 1_555 A ARG 155 A ARG 156 22 1_555 A ALA 156 A ALA 157 22 1_555 A ALA 157 A ALA 158 22 1_555 A HOH 342 I HOH 22 1_555 A HOH 348 I HOH 22 1_555 B ALA 5 B ALA 6 6 1_555 B ALA 111 B ALA 112 6 1_555 B HOH 308 J HOH 6 1_555 B HOH 320 J HOH 6 1_555 B HOH 328 J HOH 6 1_555 B HOH 331 J HOH 6 1_555 B GLN 41 B GLN 42 23 1_555 B SER 42 B SER 43 23 1_555 B PHE 43 B PHE 44 23 1_555 B TYR 56 B TYR 57 23 1_555 B HIS 57 B HIS 58 23 1_555 B GLY 58 B GLY 59 23 1_555 B VAL 78 B VAL 79 23 1_555 B ASP 79 B ASP 80 23 1_555 B ASP 81 B ASP 82 23 1_555 B ARG 123 B ARG 124 23 1_555 B VAL 132 B VAL 133 23 1_555 B LEU 135 B LEU 136 23 1_555 B LYS 136 B LYS 137 23 1_555 B GLY 137 B GLY 138 23 1_555 B SER 138 B SER 139 23 1_555 B SER 139 B SER 140 23 1_555 B PHE 154 B PHE 155 23 1_555 B ARG 155 B ARG 156 23 1_555 B ALA 156 B ALA 157 23 1_555 B ALA 157 B ALA 158 23 1_555 B ASP 168 B ASP 169 23 1_555 B HOH 326 J HOH 23 1_555 B HOH 349 J HOH 23 1_555 169 P 61