0.012641
0.000000
0.000000
0.000000
0.009855
0.000000
0.000000
0.000000
0.007660
0.00000
0.00000
0.00000
Sevrioukova, I.F.
Poulos, T.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
79.110
101.470
130.540
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
Y
142
N
C
Y
143
N
C
Y
144
N
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
Y
175
N
N
N
176
N
N
Y
177
N
N
N
178
N
N
N
179
N
FE
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
R
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
N
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
N
434
N
O
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
doub
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
3733
3741
10.1021/jm400288z
23586711
Pyridine-Substituted Desoxyritonavir Is a More Potent Inhibitor of Cytochrome P450 3A4 than Ritonavir.
2013
10.2210/pdb4i3q/pdb
pdb_00004i3q
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200
1
mirrors
CCD
2012-02-18
ADSC QUANTUM 315
Yale mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.127
1.0
BL7-1
SSRL
1.127
SYNCHROTRON
SSRL BEAMLINE BL7-1
55757.812
Cytochrome P450 3A4
1.14.13.-, 1.14.13.157, 1.14.13.32, 1.14.13.67, 1.14.13.97
residues 3-22 deleted
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
6
nat
water
1,8-cineole 2-exo-monooxygenase, Albendazole monooxygenase, Albendazole sulfoxidase, CYPIIIA3, CYPIIIA4, Cytochrome P450 3A3, Cytochrome P450 HLp, Cytochrome P450 NF-25, Cytochrome P450-PCN1, Nifedipine oxidase, Quinine 3-monooxygenase, Taurochenodeoxycholate 6-alpha-hydroxylase
no
no
MAYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYS
VFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS
MDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESR
LEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLP
NKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFS
KKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESRDGTV
SGAHHHH
MAYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYS
VFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS
MDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESR
LEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLP
NKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFS
KKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESRDGTV
SGAHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
CYP3A4, CYP3A3
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
pCWori
1
2.35
47.64
microbatch under oil
6.0
PEG 3350, sodium malonate, pH 6.0, microbatch under oil, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-04-24
1
1
2013-05-01
1
2
2013-05-22
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
ligand-free human CYP3A4
ligand-free human CYP3A4
RCSB
Y
RCSB
2012-11-26
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
THIS PROTEIN CONSISTS OF UNP RESIDUES 1-2 AND 23-503. DUE TO A DELETION OF UNP RESIDUES 3-22, RESIDUES 21-22 (MET ALA) CORRESPONDING TO UNP RESIDUE 1-2.
1WOE
PDB ENTRY 1WOE
PDB
experimental model
HEM
500
2
HEM
HEM
601
A
HOH
1
3
HOH
HOH
701
A
HOH
2
3
HOH
HOH
702
A
HOH
3
3
HOH
HOH
703
A
HOH
4
3
HOH
HOH
704
A
HOH
5
3
HOH
HOH
705
A
HOH
6
3
HOH
HOH
706
A
n
1
21
A
n
2
22
A
n
3
23
A
n
4
24
A
n
5
25
A
n
6
26
A
n
7
27
A
HIS
28
n
8
HIS
28
A
SER
29
n
9
SER
29
A
HIS
30
n
10
HIS
30
A
GLY
31
n
11
GLY
31
A
LEU
32
n
12
LEU
32
A
PHE
33
n
13
PHE
33
A
LYS
34
n
14
LYS
34
A
LYS
35
n
15
LYS
35
A
LEU
36
n
16
LEU
36
A
GLY
37
n
17
GLY
37
A
ILE
38
n
18
ILE
38
A
PRO
39
n
19
PRO
39
A
GLY
40
n
20
GLY
40
A
PRO
41
n
21
PRO
41
A
THR
42
n
22
THR
42
A
PRO
43
n
23
PRO
43
A
LEU
44
n
24
LEU
44
A
PRO
45
n
25
PRO
45
A
PHE
46
n
26
PHE
46
A
LEU
47
n
27
LEU
47
A
GLY
48
n
28
GLY
48
A
ASN
49
n
29
ASN
49
A
ILE
50
n
30
ILE
50
A
LEU
51
n
31
LEU
51
A
SER
52
n
32
SER
52
A
TYR
53
n
33
TYR
53
A
HIS
54
n
34
HIS
54
A
LYS
55
n
35
LYS
55
A
GLY
56
n
36
GLY
56
A
PHE
57
n
37
PHE
57
A
CYS
58
n
38
CYS
58
A
MET
59
n
39
MET
59
A
PHE
60
n
40
PHE
60
A
ASP
61
n
41
ASP
61
A
MET
62
n
42
MET
62
A
GLU
63
n
43
GLU
63
A
CYS
64
n
44
CYS
64
A
HIS
65
n
45
HIS
65
A
LYS
66
n
46
LYS
66
A
LYS
67
n
47
LYS
67
A
TYR
68
n
48
TYR
68
A
GLY
69
n
49
GLY
69
A
LYS
70
n
50
LYS
70
A
VAL
71
n
51
VAL
71
A
TRP
72
n
52
TRP
72
A
GLY
73
n
53
GLY
73
A
PHE
74
n
54
PHE
74
A
TYR
75
n
55
TYR
75
A
ASP
76
n
56
ASP
76
A
GLY
77
n
57
GLY
77
A
GLN
78
n
58
GLN
78
A
GLN
79
n
59
GLN
79
A
PRO
80
n
60
PRO
80
A
VAL
81
n
61
VAL
81
A
LEU
82
n
62
LEU
82
A
ALA
83
n
63
ALA
83
A
ILE
84
n
64
ILE
84
A
THR
85
n
65
THR
85
A
ASP
86
n
66
ASP
86
A
PRO
87
n
67
PRO
87
A
ASP
88
n
68
ASP
88
A
MET
89
n
69
MET
89
A
ILE
90
n
70
ILE
90
A
LYS
91
n
71
LYS
91
A
THR
92
n
72
THR
92
A
VAL
93
n
73
VAL
93
A
LEU
94
n
74
LEU
94
A
VAL
95
n
75
VAL
95
A
LYS
96
n
76
LYS
96
A
GLU
97
n
77
GLU
97
A
CYS
98
n
78
CYS
98
A
TYR
99
n
79
TYR
99
A
SER
100
n
80
SER
100
A
VAL
101
n
81
VAL
101
A
PHE
102
n
82
PHE
102
A
THR
103
n
83
THR
103
A
ASN
104
n
84
ASN
104
A
ARG
105
n
85
ARG
105
A
ARG
106
n
86
ARG
106
A
PRO
107
n
87
PRO
107
A
PHE
108
n
88
PHE
108
A
GLY
109
n
89
GLY
109
A
PRO
110
n
90
PRO
110
A
VAL
111
n
91
VAL
111
A
GLY
112
n
92
GLY
112
A
PHE
113
n
93
PHE
113
A
MET
114
n
94
MET
114
A
LYS
115
n
95
LYS
115
A
SER
116
n
96
SER
116
A
ALA
117
n
97
ALA
117
A
ILE
118
n
98
ILE
118
A
SER
119
n
99
SER
119
A
ILE
120
n
100
ILE
120
A
ALA
121
n
101
ALA
121
A
GLU
122
n
102
GLU
122
A
ASP
123
n
103
ASP
123
A
GLU
124
n
104
GLU
124
A
GLU
125
n
105
GLU
125
A
TRP
126
n
106
TRP
126
A
LYS
127
n
107
LYS
127
A
ARG
128
n
108
ARG
128
A
LEU
129
n
109
LEU
129
A
ARG
130
n
110
ARG
130
A
SER
131
n
111
SER
131
A
LEU
132
n
112
LEU
132
A
LEU
133
n
113
LEU
133
A
SER
134
n
114
SER
134
A
PRO
135
n
115
PRO
135
A
THR
136
n
116
THR
136
A
PHE
137
n
117
PHE
137
A
THR
138
n
118
THR
138
A
SER
139
n
119
SER
139
A
GLY
140
n
120
GLY
140
A
LYS
141
n
121
LYS
141
A
LEU
142
n
122
LEU
142
A
LYS
143
n
123
LYS
143
A
GLU
144
n
124
GLU
144
A
MET
145
n
125
MET
145
A
VAL
146
n
126
VAL
146
A
PRO
147
n
127
PRO
147
A
ILE
148
n
128
ILE
148
A
ILE
149
n
129
ILE
149
A
ALA
150
n
130
ALA
150
A
GLN
151
n
131
GLN
151
A
TYR
152
n
132
TYR
152
A
GLY
153
n
133
GLY
153
A
ASP
154
n
134
ASP
154
A
VAL
155
n
135
VAL
155
A
LEU
156
n
136
LEU
156
A
VAL
157
n
137
VAL
157
A
ARG
158
n
138
ARG
158
A
ASN
159
n
139
ASN
159
A
LEU
160
n
140
LEU
160
A
ARG
161
n
141
ARG
161
A
ARG
162
n
142
ARG
162
A
GLU
163
n
143
GLU
163
A
ALA
164
n
144
ALA
164
A
GLU
165
n
145
GLU
165
A
THR
166
n
146
THR
166
A
GLY
167
n
147
GLY
167
A
LYS
168
n
148
LYS
168
A
PRO
169
n
149
PRO
169
A
VAL
170
n
150
VAL
170
A
THR
171
n
151
THR
171
A
LEU
172
n
152
LEU
172
A
LYS
173
n
153
LYS
173
A
ASP
174
n
154
ASP
174
A
VAL
175
n
155
VAL
175
A
PHE
176
n
156
PHE
176
A
GLY
177
n
157
GLY
177
A
ALA
178
n
158
ALA
178
A
TYR
179
n
159
TYR
179
A
SER
180
n
160
SER
180
A
MET
181
n
161
MET
181
A
ASP
182
n
162
ASP
182
A
VAL
183
n
163
VAL
183
A
ILE
184
n
164
ILE
184
A
THR
185
n
165
THR
185
A
SER
186
n
166
SER
186
A
THR
187
n
167
THR
187
A
SER
188
n
168
SER
188
A
PHE
189
n
169
PHE
189
A
GLY
190
n
170
GLY
190
A
VAL
191
n
171
VAL
191
A
ASN
192
n
172
ASN
192
A
ILE
193
n
173
ILE
193
A
ASP
194
n
174
ASP
194
A
SER
195
n
175
SER
195
A
LEU
196
n
176
LEU
196
A
ASN
197
n
177
ASN
197
A
ASN
198
n
178
ASN
198
A
PRO
199
n
179
PRO
199
A
GLN
200
n
180
GLN
200
A
ASP
201
n
181
ASP
201
A
PRO
202
n
182
PRO
202
A
PHE
203
n
183
PHE
203
A
VAL
204
n
184
VAL
204
A
GLU
205
n
185
GLU
205
A
ASN
206
n
186
ASN
206
A
THR
207
n
187
THR
207
A
LYS
208
n
188
LYS
208
A
LYS
209
n
189
LYS
209
A
LEU
210
n
190
LEU
210
A
LEU
211
n
191
LEU
211
A
ARG
212
n
192
ARG
212
A
PHE
213
n
193
PHE
213
A
ASP
214
n
194
ASP
214
A
PHE
215
n
195
PHE
215
A
LEU
216
n
196
LEU
216
A
ASP
217
n
197
ASP
217
A
PRO
218
n
198
PRO
218
A
PHE
219
n
199
PHE
219
A
PHE
220
n
200
PHE
220
A
LEU
221
n
201
LEU
221
A
SER
222
n
202
SER
222
A
ILE
223
n
203
ILE
223
A
THR
224
n
204
THR
224
A
VAL
225
n
205
VAL
225
A
PHE
226
n
206
PHE
226
A
PRO
227
n
207
PRO
227
A
PHE
228
n
208
PHE
228
A
LEU
229
n
209
LEU
229
A
ILE
230
n
210
ILE
230
A
PRO
231
n
211
PRO
231
A
ILE
232
n
212
ILE
232
A
LEU
233
n
213
LEU
233
A
GLU
234
n
214
GLU
234
A
VAL
235
n
215
VAL
235
A
LEU
236
n
216
LEU
236
A
ASN
237
n
217
ASN
237
A
ILE
238
n
218
ILE
238
A
CYS
239
n
219
CYS
239
A
VAL
240
n
220
VAL
240
A
PHE
241
n
221
PHE
241
A
PRO
242
n
222
PRO
242
A
ARG
243
n
223
ARG
243
A
GLU
244
n
224
GLU
244
A
VAL
245
n
225
VAL
245
A
THR
246
n
226
THR
246
A
ASN
247
n
227
ASN
247
A
PHE
248
n
228
PHE
248
A
LEU
249
n
229
LEU
249
A
ARG
250
n
230
ARG
250
A
LYS
251
n
231
LYS
251
A
SER
252
n
232
SER
252
A
VAL
253
n
233
VAL
253
A
LYS
254
n
234
LYS
254
A
ARG
255
n
235
ARG
255
A
MET
256
n
236
MET
256
A
LYS
257
n
237
LYS
257
A
GLU
258
n
238
GLU
258
A
SER
259
n
239
SER
259
A
ARG
260
n
240
ARG
260
A
LEU
261
n
241
LEU
261
A
GLU
262
n
242
GLU
262
A
ASP
263
n
243
ASP
263
A
THR
264
n
244
THR
264
A
GLN
265
n
245
GLN
265
A
LYS
266
n
246
LYS
266
A
HIS
267
n
247
HIS
267
A
ARG
268
n
248
ARG
268
A
VAL
269
n
249
VAL
269
A
ASP
270
n
250
ASP
270
A
PHE
271
n
251
PHE
271
A
LEU
272
n
252
LEU
272
A
GLN
273
n
253
GLN
273
A
LEU
274
n
254
LEU
274
A
MET
275
n
255
MET
275
A
ILE
276
n
256
ILE
276
A
ASP
277
n
257
ASP
277
A
SER
278
n
258
SER
278
A
GLN
279
n
259
GLN
279
A
ASN
280
n
260
ASN
280
A
SER
281
n
261
SER
281
A
n
262
282
A
n
263
283
A
n
264
284
A
n
265
285
A
n
266
286
A
HIS
287
n
267
HIS
287
A
LYS
288
n
268
LYS
288
A
ALA
289
n
269
ALA
289
A
LEU
290
n
270
LEU
290
A
SER
291
n
271
SER
291
A
ASP
292
n
272
ASP
292
A
LEU
293
n
273
LEU
293
A
GLU
294
n
274
GLU
294
A
LEU
295
n
275
LEU
295
A
VAL
296
n
276
VAL
296
A
ALA
297
n
277
ALA
297
A
GLN
298
n
278
GLN
298
A
SER
299
n
279
SER
299
A
ILE
300
n
280
ILE
300
A
ILE
301
n
281
ILE
301
A
PHE
302
n
282
PHE
302
A
ILE
303
n
283
ILE
303
A
PHE
304
n
284
PHE
304
A
ALA
305
n
285
ALA
305
A
GLY
306
n
286
GLY
306
A
TYR
307
n
287
TYR
307
A
GLU
308
n
288
GLU
308
A
THR
309
n
289
THR
309
A
THR
310
n
290
THR
310
A
SER
311
n
291
SER
311
A
SER
312
n
292
SER
312
A
VAL
313
n
293
VAL
313
A
LEU
314
n
294
LEU
314
A
SER
315
n
295
SER
315
A
PHE
316
n
296
PHE
316
A
ILE
317
n
297
ILE
317
A
MET
318
n
298
MET
318
A
TYR
319
n
299
TYR
319
A
GLU
320
n
300
GLU
320
A
LEU
321
n
301
LEU
321
A
ALA
322
n
302
ALA
322
A
THR
323
n
303
THR
323
A
HIS
324
n
304
HIS
324
A
PRO
325
n
305
PRO
325
A
ASP
326
n
306
ASP
326
A
VAL
327
n
307
VAL
327
A
GLN
328
n
308
GLN
328
A
GLN
329
n
309
GLN
329
A
LYS
330
n
310
LYS
330
A
LEU
331
n
311
LEU
331
A
GLN
332
n
312
GLN
332
A
GLU
333
n
313
GLU
333
A
GLU
334
n
314
GLU
334
A
ILE
335
n
315
ILE
335
A
ASP
336
n
316
ASP
336
A
ALA
337
n
317
ALA
337
A
VAL
338
n
318
VAL
338
A
LEU
339
n
319
LEU
339
A
PRO
340
n
320
PRO
340
A
ASN
341
n
321
ASN
341
A
LYS
342
n
322
LYS
342
A
ALA
343
n
323
ALA
343
A
PRO
344
n
324
PRO
344
A
PRO
345
n
325
PRO
345
A
THR
346
n
326
THR
346
A
TYR
347
n
327
TYR
347
A
ASP
348
n
328
ASP
348
A
THR
349
n
329
THR
349
A
VAL
350
n
330
VAL
350
A
LEU
351
n
331
LEU
351
A
GLN
352
n
332
GLN
352
A
MET
353
n
333
MET
353
A
GLU
354
n
334
GLU
354
A
TYR
355
n
335
TYR
355
A
LEU
356
n
336
LEU
356
A
ASP
357
n
337
ASP
357
A
MET
358
n
338
MET
358
A
VAL
359
n
339
VAL
359
A
VAL
360
n
340
VAL
360
A
ASN
361
n
341
ASN
361
A
GLU
362
n
342
GLU
362
A
THR
363
n
343
THR
363
A
LEU
364
n
344
LEU
364
A
ARG
365
n
345
ARG
365
A
LEU
366
n
346
LEU
366
A
PHE
367
n
347
PHE
367
A
PRO
368
n
348
PRO
368
A
ILE
369
n
349
ILE
369
A
ALA
370
n
350
ALA
370
A
MET
371
n
351
MET
371
A
ARG
372
n
352
ARG
372
A
LEU
373
n
353
LEU
373
A
GLU
374
n
354
GLU
374
A
ARG
375
n
355
ARG
375
A
VAL
376
n
356
VAL
376
A
CYS
377
n
357
CYS
377
A
LYS
378
n
358
LYS
378
A
LYS
379
n
359
LYS
379
A
ASP
380
n
360
ASP
380
A
VAL
381
n
361
VAL
381
A
GLU
382
n
362
GLU
382
A
ILE
383
n
363
ILE
383
A
ASN
384
n
364
ASN
384
A
GLY
385
n
365
GLY
385
A
MET
386
n
366
MET
386
A
PHE
387
n
367
PHE
387
A
ILE
388
n
368
ILE
388
A
PRO
389
n
369
PRO
389
A
LYS
390
n
370
LYS
390
A
GLY
391
n
371
GLY
391
A
VAL
392
n
372
VAL
392
A
VAL
393
n
373
VAL
393
A
VAL
394
n
374
VAL
394
A
MET
395
n
375
MET
395
A
ILE
396
n
376
ILE
396
A
PRO
397
n
377
PRO
397
A
SER
398
n
378
SER
398
A
TYR
399
n
379
TYR
399
A
ALA
400
n
380
ALA
400
A
LEU
401
n
381
LEU
401
A
HIS
402
n
382
HIS
402
A
ARG
403
n
383
ARG
403
A
ASP
404
n
384
ASP
404
A
PRO
405
n
385
PRO
405
A
LYS
406
n
386
LYS
406
A
TYR
407
n
387
TYR
407
A
TRP
408
n
388
TRP
408
A
THR
409
n
389
THR
409
A
GLU
410
n
390
GLU
410
A
PRO
411
n
391
PRO
411
A
GLU
412
n
392
GLU
412
A
LYS
413
n
393
LYS
413
A
PHE
414
n
394
PHE
414
A
LEU
415
n
395
LEU
415
A
PRO
416
n
396
PRO
416
A
GLU
417
n
397
GLU
417
A
ARG
418
n
398
ARG
418
A
PHE
419
n
399
PHE
419
A
SER
420
n
400
SER
420
A
LYS
421
n
401
LYS
421
A
LYS
422
n
402
LYS
422
A
ASN
423
n
403
ASN
423
A
LYS
424
n
404
LYS
424
A
ASP
425
n
405
ASP
425
A
ASN
426
n
406
ASN
426
A
ILE
427
n
407
ILE
427
A
ASP
428
n
408
ASP
428
A
PRO
429
n
409
PRO
429
A
TYR
430
n
410
TYR
430
A
ILE
431
n
411
ILE
431
A
TYR
432
n
412
TYR
432
A
THR
433
n
413
THR
433
A
PRO
434
n
414
PRO
434
A
PHE
435
n
415
PHE
435
A
GLY
436
n
416
GLY
436
A
SER
437
n
417
SER
437
A
GLY
438
n
418
GLY
438
A
PRO
439
n
419
PRO
439
A
ARG
440
n
420
ARG
440
A
ASN
441
n
421
ASN
441
A
CYS
442
n
422
CYS
442
A
ILE
443
n
423
ILE
443
A
GLY
444
n
424
GLY
444
A
MET
445
n
425
MET
445
A
ARG
446
n
426
ARG
446
A
PHE
447
n
427
PHE
447
A
ALA
448
n
428
ALA
448
A
LEU
449
n
429
LEU
449
A
MET
450
n
430
MET
450
A
ASN
451
n
431
ASN
451
A
MET
452
n
432
MET
452
A
LYS
453
n
433
LYS
453
A
LEU
454
n
434
LEU
454
A
ALA
455
n
435
ALA
455
A
LEU
456
n
436
LEU
456
A
ILE
457
n
437
ILE
457
A
ARG
458
n
438
ARG
458
A
VAL
459
n
439
VAL
459
A
LEU
460
n
440
LEU
460
A
GLN
461
n
441
GLN
461
A
ASN
462
n
442
ASN
462
A
PHE
463
n
443
PHE
463
A
SER
464
n
444
SER
464
A
PHE
465
n
445
PHE
465
A
LYS
466
n
446
LYS
466
A
PRO
467
n
447
PRO
467
A
CYS
468
n
448
CYS
468
A
LYS
469
n
449
LYS
469
A
GLU
470
n
450
GLU
470
A
THR
471
n
451
THR
471
A
GLN
472
n
452
GLN
472
A
ILE
473
n
453
ILE
473
A
PRO
474
n
454
PRO
474
A
LEU
475
n
455
LEU
475
A
LYS
476
n
456
LYS
476
A
LEU
477
n
457
LEU
477
A
SER
478
n
458
SER
478
A
LEU
479
n
459
LEU
479
A
GLY
480
n
460
GLY
480
A
GLY
481
n
461
GLY
481
A
LEU
482
n
462
LEU
482
A
LEU
483
n
463
LEU
483
A
GLN
484
n
464
GLN
484
A
PRO
485
n
465
PRO
485
A
GLU
486
n
466
GLU
486
A
LYS
487
n
467
LYS
487
A
PRO
488
n
468
PRO
488
A
VAL
489
n
469
VAL
489
A
VAL
490
n
470
VAL
490
A
LEU
491
n
471
LEU
491
A
LYS
492
n
472
LYS
492
A
VAL
493
n
473
VAL
493
A
GLU
494
n
474
GLU
494
A
SER
495
n
475
SER
495
A
ARG
496
n
476
ARG
496
A
ASP
497
n
477
ASP
497
A
n
478
498
A
n
479
499
A
n
480
500
A
n
481
501
A
n
482
502
A
n
483
503
A
n
484
504
A
n
485
505
A
n
486
506
A
n
487
507
A
2.5911
-1.9682
1.4078
5.2486
-1.1483
2.4477
-0.1132
0.2494
0.2035
0.3475
-0.1351
0.2141
-0.1831
0.0430
0.2483
0.1774
-0.0522
-0.1358
0.3555
0.0534
0.2524
refined
19.7251
23.9985
-13.4491
X-RAY DIFFRACTION
A
28
A
601
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
4
tetrameric
4940
-57
79100
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NA
HEM
1_555
103.2
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NB
HEM
1_555
93.3
A
HEM
601
B
NA
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NB
HEM
1_555
84.7
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NC
HEM
1_555
106.8
A
HEM
601
B
NA
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NC
HEM
1_555
149.9
A
HEM
601
B
NB
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
NC
HEM
1_555
92.0
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
ND
HEM
1_555
102.6
A
HEM
601
B
NA
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
ND
HEM
1_555
85.7
A
HEM
601
B
NB
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
ND
HEM
1_555
163.0
A
HEM
601
B
NC
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HEM
601
B
ND
HEM
1_555
89.3
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
173.8
A
HEM
601
B
NA
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
77.0
A
HEM
601
B
NB
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
80.6
A
HEM
601
B
NC
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
73.0
A
HEM
601
B
ND
HEM
1_555
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
83.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-x+1,-y,z
crystal symmetry operation
79.1100000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z
crystal symmetry operation
79.1100000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
76
A
N
ASP
56
A
O
GLN
79
A
O
GLN
59
A
N
LEU
82
A
N
LEU
62
A
O
MET
395
A
O
MET
375
A
O
VAL
394
A
O
VAL
374
A
N
ARG
375
A
N
ARG
355
A
N
VAL
170
A
N
VAL
150
A
O
LEU
491
A
O
LEU
471
A
O
GLU
494
A
O
GLU
474
A
N
SER
464
A
N
SER
444
A
N
VAL
381
A
N
VAL
361
A
O
ILE
388
A
O
ILE
368
1
A
MET
21
A
MET
1
1
Y
1
A
ALA
22
A
ALA
2
1
Y
1
A
TYR
23
A
TYR
3
1
Y
1
A
LEU
24
A
LEU
4
1
Y
1
A
TYR
25
A
TYR
5
1
Y
1
A
GLY
26
A
GLY
6
1
Y
1
A
THR
27
A
THR
7
1
Y
1
A
LYS
282
A
LYS
262
1
Y
1
A
GLU
283
A
GLU
263
1
Y
1
A
THR
284
A
THR
264
1
Y
1
A
GLU
285
A
GLU
265
1
Y
1
A
SER
286
A
SER
266
1
Y
1
A
GLY
498
A
GLY
478
1
Y
1
A
THR
499
A
THR
479
1
Y
1
A
VAL
500
A
VAL
480
1
Y
1
A
SER
501
A
SER
481
1
Y
1
A
GLY
502
A
GLY
482
1
Y
1
A
ALA
503
A
ALA
483
1
Y
1
A
HIS
504
A
HIS
484
1
Y
1
A
HIS
505
A
HIS
485
1
Y
1
A
HIS
506
A
HIS
486
1
Y
1
A
HIS
507
A
HIS
487
1
Y
1
-16.75
2.00
110.40
93.65
A
A
A
CB
CA
C
GLN
GLN
GLN
200
200
200
N
1
24.72
2.70
111.00
135.72
A
A
A
N
CA
C
GLN
GLN
GLN
200
200
200
N
1
-15.56
1.80
110.60
95.04
A
A
A
N
CA
CB
ASP
ASP
ASP
201
201
201
N
1
-12.65
2.00
110.40
97.75
A
A
A
CB
CA
C
LYS
LYS
LYS
257
257
257
N
1
-3.38
0.50
120.30
116.92
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
418
418
418
N
1
A
PHE
46
72.47
-55.07
1
A
VAL
95
-100.90
-74.79
1
A
PHE
102
-112.80
53.52
1
A
ASP
123
44.12
-120.34
1
A
PHE
189
65.39
124.76
1
A
VAL
191
-107.61
77.33
1
A
ASN
198
-112.45
57.76
1
A
ASP
201
-30.89
127.47
1
A
PHE
215
-69.68
7.02
1
A
PHE
226
-105.69
69.66
1
A
LYS
254
-39.53
-72.23
1
A
GLU
258
-115.94
-91.96
1
A
SER
259
-58.32
13.40
1
A
ARG
260
-105.16
-65.60
1
A
ASP
263
-179.48
-12.84
1
A
THR
264
60.88
-161.06
1
A
GLN
265
84.28
149.45
1
A
LYS
266
38.74
45.42
1
A
ALA
289
84.65
158.98
1
A
ASP
292
-66.91
7.44
1
A
ASN
341
50.74
71.48
1
A
LYS
342
40.80
22.73
1
A
MET
371
72.04
-55.49
1
A
LYS
379
-176.32
149.50
1
A
ASN
384
27.97
41.63
1
A
ARG
418
-34.56
-38.67
1
A
ASN
423
-152.88
-32.40
1
A
LYS
424
-43.25
-14.94
1
A
THR
433
-144.74
47.65
1
A
CYS
468
-103.88
-163.97
93.672
0.09
0.00
0.00
-0.05
0.00
-0.04
0.954
0.926
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.29814
0.21999
0.22355
2.602
65.27
819
15432
5.0
98.39
35.644
0.343
RANDOM
1
THROUGHOUT
PHASER
2.329
0.394
0.80
0.80
1.20
PDB ENTRY 1WOE
MAXIMUM LIKELIHOOD
MASK
2.602
65.27
6
3798
43
0
3749
0.011
0.020
3891
1.998
2.000
5277
6.541
5.000
463
38.998
23.879
165
19.750
15.000
703
18.884
15.000
22
0.101
0.200
580
0.008
0.021
2902
0.435
0.291
2.669
44
1044
20
97.49
2.60
65.3
4I3Q
16524
16260
2.0
0.082
1
10.3
7.1
98.4
0.516
2.60
2.67
2.3
1
4.5
97.5
data collection
Blu-Ice
phasing
PHASER
refinement
REFMAC
5.6.0117
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of human CYP3A4 coordinated to a water molecule
1
N
N
2
N
N
3
N
N
A
GLY
31
A
GLY
11
HELX_P
A
LEU
36
A
LEU
16
1
1
6
A
ASN
49
A
ASN
29
HELX_P
A
HIS
54
A
HIS
34
5
2
6
A
LYS
55
A
LYS
35
HELX_P
A
GLY
69
A
GLY
49
1
3
15
A
ASP
86
A
ASP
66
HELX_P
A
VAL
95
A
VAL
75
1
4
10
A
VAL
111
A
VAL
91
HELX_P
A
ALA
117
A
ALA
97
5
5
7
A
GLU
122
A
GLU
102
HELX_P
A
SER
134
A
SER
114
1
6
13
A
PRO
135
A
PRO
115
HELX_P
A
PHE
137
A
PHE
117
5
7
3
A
THR
138
A
THR
118
HELX_P
A
MET
145
A
MET
125
1
8
8
A
MET
145
A
MET
125
HELX_P
A
GLY
167
A
GLY
147
1
9
23
A
LEU
172
A
LEU
152
HELX_P
A
SER
188
A
SER
168
1
10
17
A
ASP
201
A
ASP
181
HELX_P
A
LYS
209
A
LYS
189
1
11
9
A
ASP
217
A
ASP
197
HELX_P
A
PHE
226
A
PHE
206
1
12
10
A
LEU
229
A
LEU
209
HELX_P
A
LEU
236
A
LEU
216
1
13
8
A
PRO
242
A
PRO
222
HELX_P
A
GLU
258
A
GLU
238
1
14
17
A
ASP
270
A
ASP
250
HELX_P
A
SER
278
A
SER
258
1
15
9
A
LEU
293
A
LEU
273
HELX_P
A
THR
323
A
THR
303
1
16
31
A
HIS
324
A
HIS
304
HELX_P
A
LEU
339
A
LEU
319
1
17
16
A
THR
346
A
THR
326
HELX_P
A
LEU
351
A
LEU
331
1
18
6
A
MET
353
A
MET
333
HELX_P
A
PHE
367
A
PHE
347
1
19
15
A
PRO
397
A
PRO
377
HELX_P
A
HIS
402
A
HIS
382
1
20
6
A
LEU
415
A
LEU
395
HELX_P
A
SER
420
A
SER
400
5
21
6
A
ASN
423
A
ASN
403
HELX_P
A
ILE
427
A
ILE
407
5
22
5
A
SER
437
A
SER
417
HELX_P
A
ASN
441
A
ASN
421
5
23
5
A
GLY
444
A
GLY
424
HELX_P
A
ASN
462
A
ASN
442
1
24
19
metalc
2.075
A
CYS
442
A
SG
CYS
422
1_555
A
HEM
601
B
FE
HEM
1_555
metalc
2.496
A
HEM
601
B
FE
HEM
1_555
A
HOH
703
C
O
HOH
1_555
OXIDOREDUCTASE
hemoprotein, monooxygenase, cytochrome P450 reductase, cytochrome b5, endoplasmic reticulum, cytochrome P450, OXIDOREDUCTASE
A
ILE
473
A
ILE
453
1
A
PRO
474
A
PRO
454
-6.67
CP3A4_HUMAN
UNP
1
1
P08684
MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQP
VLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNL
RREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICV
FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYE
LATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYA
LHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLG
GLLQPEKPVVLKVESRDGTVSGA
1
503
4I3Q
21
503
P08684
A
1
1
483
1
LEU
deletion
4I3Q
A
P08684
UNP
3
1
ILE
deletion
4I3Q
A
P08684
UNP
4
1
PRO
deletion
4I3Q
A
P08684
UNP
5
1
ASP
deletion
4I3Q
A
P08684
UNP
6
1
LEU
deletion
4I3Q
A
P08684
UNP
7
1
ALA
deletion
4I3Q
A
P08684
UNP
8
1
MET
deletion
4I3Q
A
P08684
UNP
9
1
GLU
deletion
4I3Q
A
P08684
UNP
10
1
THR
deletion
4I3Q
A
P08684
UNP
11
1
TRP
deletion
4I3Q
A
P08684
UNP
12
1
LEU
deletion
4I3Q
A
P08684
UNP
13
1
LEU
deletion
4I3Q
A
P08684
UNP
14
1
LEU
deletion
4I3Q
A
P08684
UNP
15
1
ALA
deletion
4I3Q
A
P08684
UNP
16
1
VAL
deletion
4I3Q
A
P08684
UNP
17
1
SER
deletion
4I3Q
A
P08684
UNP
18
1
LEU
deletion
4I3Q
A
P08684
UNP
19
1
VAL
deletion
4I3Q
A
P08684
UNP
20
1
LEU
deletion
4I3Q
A
P08684
UNP
21
1
LEU
deletion
4I3Q
A
P08684
UNP
22
1
expression tag
HIS
504
4I3Q
A
P08684
UNP
484
1
expression tag
HIS
505
4I3Q
A
P08684
UNP
485
1
expression tag
HIS
506
4I3Q
A
P08684
UNP
486
1
expression tag
HIS
507
4I3Q
A
P08684
UNP
487
4
3
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
71
A
VAL
51
A
ASP
76
A
ASP
56
A
GLN
79
A
GLN
59
A
ILE
84
A
ILE
64
A
VAL
393
A
VAL
373
A
ILE
396
A
ILE
376
A
LEU
373
A
LEU
353
A
VAL
376
A
VAL
356
A
VAL
170
A
VAL
150
A
THR
171
A
THR
151
A
VAL
490
A
VAL
470
A
SER
495
A
SER
475
A
PHE
463
A
PHE
443
A
LYS
466
A
LYS
446
A
VAL
381
A
VAL
361
A
ILE
383
A
ILE
363
A
MET
386
A
MET
366
A
ILE
388
A
ILE
368
BINDING SITE FOR RESIDUE HEM A 601
A
HEM
601
Software
20
A
ARG
105
A
ARG
85
20
1_555
A
ILE
118
A
ILE
98
20
1_555
A
SER
119
A
SER
99
20
1_555
A
TRP
126
A
TRP
106
20
1_555
A
ARG
130
A
ARG
110
20
1_555
A
ALA
305
A
ALA
285
20
1_555
A
THR
309
A
THR
289
20
1_555
A
ILE
369
A
ILE
349
20
1_555
A
ALA
370
A
ALA
350
20
1_555
A
LEU
373
A
LEU
353
20
1_555
A
ARG
375
A
ARG
355
20
1_555
A
PRO
434
A
PRO
414
20
1_555
A
GLY
436
A
GLY
416
20
1_555
A
ARG
440
A
ARG
420
20
1_555
A
ASN
441
A
ASN
421
20
1_555
A
CYS
442
A
CYS
422
20
1_555
A
ILE
443
A
ILE
423
20
1_555
A
GLY
444
A
GLY
424
20
1_555
A
MET
452
A
MET
432
20
1_555
A
HOH
703
C
HOH
20
1_555
23
I 2 2 2