0.020988 0.000000 0.004057 0.000000 0.013611 0.000000 0.000000 0.000000 0.009319 0.00000 0.00000 0.00000 Joyce, M.G. Biertumpfel, C. Nabel, G.J. Kwong, P.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 100.94 90.00 47.647 73.471 109.292 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 S C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N S N 235 N C N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N O N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 R C N 307 N O N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N N Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N C N 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US J.Virol. JOVIAM 0825 0022-538X 87 2294 2306 10.1128/JVI.02717-12 23236069 Outer Domain of HIV-1 gp120: Antigenic Optimization, Structural Malleability, and Crystal Structure with Antibody VRC-PG04. 2013 10.2210/pdb4i3s/pdb pdb_00004i3s 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-06-26 MARMOSAIC 300 mm CCD Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1 1.0 22-ID APS 1 SYNCHROTRON APS BEAMLINE 22-ID 20774.172 Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) 1 man polymer 24644.771 Heavy chain of VRC-PG04 Fab 1 man polymer 23073.822 Light chain of VRC-PG04 Fab 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer no no KPVVSTQLLLNGSLAEKEIRIKSEDISDNAKNIIVQLTKPVLINCARPSNNTQYCVVNRTQWNDTLGQVAIQLRKHWNTC IIFNEPSGGDLEITTHSFNCGGEFFYCNTSDLFNSTWNIEGTASIDGTESNDDITLPCRIKGSGAPPIQGVIRCQSNITG ILLTRDGGSGSGTCETFRPGGGDMRDNWRS KPVVSTQLLLNGSLAEKEIRIKSEDISDNAKNIIVQLTKPVLINCARPSNNTQYCVVNRTQWNDTLGQVAIQLRKHWNTC IIFNEPSGGDLEITTHSFNCGGEFFYCNTSDLFNSTWNIEGTASIDGTESNDDITLPCRIKGSGAPPIQGVIRCQSNITG ILLTRDGGSGSGTCETFRPGGGDMRDNWRS G polypeptide(L) no no QVQLVQSGSGVKKPGASVRVSCWTSEDIFERTELIHWVRQAPGQGLEWIGWVKTVTGAVNFGSPDFRQRVSLTRDRDLFT AHMDIRGLTQGDTATYFCARQKFYTGGQGWYFDLWGRGTLIVVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC QVQLVQSGSGVKKPGASVRVSCWTSEDIFERTELIHWVRQAPGQGLEWIGWVKTVTGAVNFGSPDFRQRVSLTRDRDLFT AHMDIRGLTQGDTATYFCARQKFYTGGQGWYFDLWGRGTLIVVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC H polypeptide(L) no no EIVLTQSPGTLSLSPGETASLSCTAASYGHMTWYQKKPGQPPKLLIFATSKRASGIPDRFSGSQFGKQYTLTITRMEPED FARYYCQQLEFFGQGTRLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC EIVLTQSPGTLSLSPGETASLSCTAASYGHMTWYQKKPGQPPKLLIFATSKRASGIPDRFSGSQFGKQYTLTITRMEPED FARYYCQQLEFFGQGTRLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 12721 Human Immunodeficiency Virus 293S 9606 Homo sapiens human human sample 9606 Homo sapiens 293F 9606 Homo sapiens human human sample 9606 Homo sapiens 293F 9606 Homo sapiens 1 2.74 55.15 VAPOR DIFFUSION, HANGING DROP 7.5 52.5% peg 400, 100 mM HEPES pH7.5, 200 mM CaCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 entity_src_gen struct_conn struct_conn_type struct_site chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type repository Initial release Database references Database references Derived calculations Source and taxonomy Data collection Database references Refinement description Derived calculations 1 0 2013-01-09 1 1 2013-01-23 1 2 2013-02-13 1 3 2021-05-26 1 4 2023-09-20 1 5 2023-12-27 _entity_src_gen.gene_src_common_name _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_strain _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_seq_id RCSB Y RCSB 2012-11-26 REL REL CA CALCIUM ION 3SE9 PDB ENTRY 3SE9 PDB experimental model CA 1 4 CA CA 301 L LYS 252 n 1 LYS 252 G PRO 253 n 2 PRO 253 G VAL 254 n 3 VAL 254 G VAL 255 n 4 VAL 255 G SER 256 n 5 SER 256 G THR 257 n 6 THR 257 G GLN 258 n 7 GLN 258 G LEU 259 n 8 LEU 259 G LEU 260 n 9 LEU 260 G LEU 261 n 10 LEU 261 G ASN 262 n 11 ASN 262 G GLY 263 n 12 GLY 263 G SER 264 n 13 SER 264 G LEU 265 n 14 LEU 265 G ALA 266 n 15 ALA 266 G GLU 267 n 16 GLU 267 G LYS 268 n 17 LYS 268 G GLU 269 n 18 GLU 269 G ILE 270 n 19 ILE 270 G ARG 271 n 20 ARG 271 G ILE 272 n 21 ILE 272 G LYS 273 n 22 LYS 273 G SER 274 n 23 SER 274 G GLU 275 n 24 GLU 275 G ASP 276 n 25 ASP 276 G ILE 277 n 26 ILE 277 G SER 278 n 27 SER 278 G ASP 279 n 28 ASP 279 G ASN 280 n 29 ASN 280 G ALA 281 n 30 ALA 281 G LYS 282 n 31 LYS 282 G ASN 283 n 32 ASN 283 G ILE 284 n 33 ILE 284 G ILE 285 n 34 ILE 285 G VAL 286 n 35 VAL 286 G GLN 287 n 36 GLN 287 G LEU 288 n 37 LEU 288 G THR 289 n 38 THR 289 G LYS 290 n 39 LYS 290 G PRO 291 n 40 PRO 291 G VAL 292 n 41 VAL 292 G LEU 293 n 42 LEU 293 G ILE 294 n 43 ILE 294 G ASN 295 n 44 ASN 295 G CYS 296 n 45 CYS 296 G ALA 297 n 46 ALA 297 G ARG 298 n 47 ARG 298 G PRO 299 n 48 PRO 299 G SER 300 n 49 SER 300 G ASN 301 n 50 ASN 301 G ASN 302 n 51 ASN 302 G THR 303 n 52 THR 303 G GLN 304 n 53 GLN 304 G TYR 330 n 54 TYR 330 G CYS 331 n 55 CYS 331 G VAL 332 n 56 VAL 332 G VAL 333 n 57 VAL 333 G ASN 334 n 58 ASN 334 G ARG 335 n 59 ARG 335 G THR 336 n 60 THR 336 G GLN 337 n 61 GLN 337 G TRP 338 n 62 TRP 338 G ASN 339 n 63 ASN 339 G ASP 340 n 64 ASP 340 G THR 341 n 65 THR 341 G LEU 342 n 66 LEU 342 G GLY 343 n 67 GLY 343 G GLN 344 n 68 GLN 344 G VAL 345 n 69 VAL 345 G ALA 346 n 70 ALA 346 G ILE 347 n 71 ILE 347 G GLN 348 n 72 GLN 348 G LEU 349 n 73 LEU 349 G ARG 350 n 74 ARG 350 G LYS 351 n 75 LYS 351 G HIS 352 n 76 HIS 352 G TRP 353 n 77 TRP 353 G ASN 356 n 78 ASN 356 G THR 357 n 79 THR 357 G CYS 358 n 80 CYS 358 G ILE 359 n 81 ILE 359 G ILE 360 n 82 ILE 360 G PHE 361 n 83 PHE 361 G ASN 362 n 84 ASN 362 G GLU 363 n 85 GLU 363 G PRO 364 n 86 PRO 364 G SER 365 n 87 SER 365 G GLY 366 n 88 GLY 366 G GLY 367 n 89 GLY 367 G ASP 368 n 90 ASP 368 G LEU 369 n 91 LEU 369 G GLU 370 n 92 GLU 370 G ILE 371 n 93 ILE 371 G THR 372 n 94 THR 372 G THR 373 n 95 THR 373 G HIS 374 n 96 HIS 374 G SER 375 n 97 SER 375 G PHE 376 n 98 PHE 376 G ASN 377 n 99 ASN 377 G CYS 378 n 100 CYS 378 G GLY 379 n 101 GLY 379 G GLY 380 n 102 GLY 380 G GLU 381 n 103 GLU 381 G PHE 382 n 104 PHE 382 G PHE 383 n 105 PHE 383 G TYR 384 n 106 TYR 384 G CYS 385 n 107 CYS 385 G ASN 386 n 108 ASN 386 G THR 387 n 109 THR 387 G SER 388 n 110 SER 388 G ASP 389 n 111 ASP 389 G LEU 390 n 112 LEU 390 G PHE 391 n 113 PHE 391 G ASN 392 n 114 ASN 392 G SER 393 n 115 SER 393 G THR 394 n 116 THR 394 G TRP 395 n 117 TRP 395 G ASN 395 n 118 A ASN 395 G ILE 396 n 119 ILE 396 G GLU 397 n 120 GLU 397 G GLY 398 n 121 GLY 398 G THR 399 n 122 THR 399 G ALA 400 n 123 ALA 400 G SER 401 n 124 SER 401 G ILE 402 n 125 ILE 402 G ASP 403 n 126 ASP 403 G n 127 407 G n 128 408 G n 129 409 G n 130 410 G n 131 411 G n 132 412 G ASP 413 n 133 ASP 413 G ILE 414 n 134 ILE 414 G THR 415 n 135 THR 415 G LEU 416 n 136 LEU 416 G PRO 417 n 137 PRO 417 G CYS 418 n 138 CYS 418 G ARG 419 n 139 ARG 419 G ILE 420 n 140 ILE 420 G LYS 421 n 141 LYS 421 G GLY 431 n 142 GLY 431 G SER 432 n 143 SER 432 G GLY 433 n 144 GLY 433 G ALA 436 n 145 ALA 436 G PRO 437 n 146 PRO 437 G PRO 438 n 147 PRO 438 G ILE 439 n 148 ILE 439 G GLN 440 n 149 GLN 440 G GLY 441 n 150 GLY 441 G VAL 442 n 151 VAL 442 G ILE 443 n 152 ILE 443 G ARG 444 n 153 ARG 444 G CYS 445 n 154 CYS 445 G GLN 446 n 155 GLN 446 G SER 447 n 156 SER 447 G ASN 448 n 157 ASN 448 G ILE 449 n 158 ILE 449 G THR 450 n 159 THR 450 G GLY 451 n 160 GLY 451 G ILE 452 n 161 ILE 452 G LEU 453 n 162 LEU 453 G LEU 454 n 163 LEU 454 G THR 455 n 164 THR 455 G ARG 456 n 165 ARG 456 G ASP 457 n 166 ASP 457 G GLY 458 n 167 GLY 458 G GLY 459 n 168 GLY 459 G SER 460 n 169 SER 460 G GLY 461 n 170 GLY 461 G SER 462 n 171 SER 462 G GLY 463 n 172 GLY 463 G THR 464 n 173 THR 464 G CYS 465 n 174 CYS 465 G GLU 466 n 175 GLU 466 G THR 467 n 176 THR 467 G PHE 468 n 177 PHE 468 G ARG 469 n 178 ARG 469 G PRO 470 n 179 PRO 470 G GLY 471 n 180 GLY 471 G GLY 472 n 181 GLY 472 G GLY 473 n 182 GLY 473 G ASP 474 n 183 ASP 474 G MET 475 n 184 MET 475 G ARG 476 n 185 ARG 476 G ASP 477 n 186 ASP 477 G n 187 478 G n 188 479 G n 189 480 G n 190 481 G GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H VAL 5 n 5 VAL 5 H GLN 6 n 6 GLN 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H SER 9 n 9 SER 9 H GLY 10 n 10 GLY 10 H VAL 11 n 11 VAL 11 H LYS 12 n 12 LYS 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H ALA 16 n 16 ALA 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H ARG 19 n 19 ARG 19 H VAL 20 n 20 VAL 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H TRP 23 n 23 TRP 23 H THR 24 n 24 THR 24 H SER 25 n 25 SER 25 H GLU 26 n 26 GLU 26 H ASP 27 n 27 ASP 27 H ILE 28 n 28 ILE 28 H PHE 29 n 29 PHE 29 H GLU 30 n 30 GLU 30 H ARG 31 n 31 ARG 31 H THR 32 n 32 THR 32 H GLU 33 n 33 GLU 33 H LEU 34 n 34 LEU 34 H ILE 35 n 35 ILE 35 H HIS 35 n 36 A HIS 35 H TRP 36 n 37 TRP 36 H VAL 37 n 38 VAL 37 H ARG 38 n 39 ARG 38 H GLN 39 n 40 GLN 39 H ALA 40 n 41 ALA 40 H PRO 41 n 42 PRO 41 H GLY 42 n 43 GLY 42 H GLN 43 n 44 GLN 43 H GLY 44 n 45 GLY 44 H LEU 45 n 46 LEU 45 H GLU 46 n 47 GLU 46 H TRP 47 n 48 TRP 47 H ILE 48 n 49 ILE 48 H GLY 49 n 50 GLY 49 H TRP 50 n 51 TRP 50 H VAL 51 n 52 VAL 51 H LYS 52 n 53 LYS 52 H THR 52 n 54 A THR 52 H VAL 52 n 55 B VAL 52 H THR 53 n 56 THR 53 H GLY 54 n 57 GLY 54 H ALA 55 n 58 ALA 55 H VAL 56 n 59 VAL 56 H ASN 57 n 60 ASN 57 H PHE 58 n 61 PHE 58 H GLY 59 n 62 GLY 59 H SER 60 n 63 SER 60 H PRO 61 n 64 PRO 61 H ASP 62 n 65 ASP 62 H PHE 63 n 66 PHE 63 H ARG 64 n 67 ARG 64 H GLN 65 n 68 GLN 65 H ARG 66 n 69 ARG 66 H VAL 67 n 70 VAL 67 H SER 68 n 71 SER 68 H LEU 69 n 72 LEU 69 H THR 70 n 73 THR 70 H ARG 71 n 74 ARG 71 H ASP 72 n 75 ASP 72 H ARG 73 n 76 ARG 73 H ASP 74 n 77 ASP 74 H LEU 75 n 78 LEU 75 H PHE 76 n 79 PHE 76 H THR 77 n 80 THR 77 H ALA 78 n 81 ALA 78 H HIS 79 n 82 HIS 79 H MET 80 n 83 MET 80 H ASP 81 n 84 ASP 81 H ILE 82 n 85 ILE 82 H ARG 82 n 86 A ARG 82 H GLY 82 n 87 B GLY 82 H LEU 82 n 88 C LEU 82 H THR 83 n 89 THR 83 H GLN 84 n 90 GLN 84 H GLY 85 n 91 GLY 85 H ASP 86 n 92 ASP 86 H THR 87 n 93 THR 87 H ALA 88 n 94 ALA 88 H THR 89 n 95 THR 89 H TYR 90 n 96 TYR 90 H PHE 91 n 97 PHE 91 H CYS 92 n 98 CYS 92 H ALA 93 n 99 ALA 93 H ARG 94 n 100 ARG 94 H GLN 95 n 101 GLN 95 H LYS 96 n 102 LYS 96 H PHE 97 n 103 PHE 97 H TYR 98 n 104 TYR 98 H THR 99 n 105 THR 99 H GLY 100 n 106 GLY 100 H GLY 100 n 107 A GLY 100 H GLN 100 n 108 B GLN 100 H GLY 100 n 109 C GLY 100 H TRP 100 n 110 D TRP 100 H TYR 100 n 111 E TYR 100 H PHE 100 n 112 F PHE 100 H ASP 101 n 113 ASP 101 H LEU 102 n 114 LEU 102 H TRP 103 n 115 TRP 103 H GLY 104 n 116 GLY 104 H ARG 105 n 117 ARG 105 H GLY 106 n 118 GLY 106 H THR 107 n 119 THR 107 H LEU 108 n 120 LEU 108 H ILE 109 n 121 ILE 109 H VAL 110 n 122 VAL 110 H VAL 111 n 123 VAL 111 H SER 112 n 124 SER 112 H SER 113 n 125 SER 113 H ALA 114 n 126 ALA 114 H SER 115 n 127 SER 115 H THR 116 n 128 THR 116 H LYS 117 n 129 LYS 117 H GLY 118 n 130 GLY 118 H PRO 119 n 131 PRO 119 H SER 120 n 132 SER 120 H VAL 121 n 133 VAL 121 H PHE 122 n 134 PHE 122 H PRO 123 n 135 PRO 123 H LEU 124 n 136 LEU 124 H ALA 125 n 137 ALA 125 H PRO 126 n 138 PRO 126 H SER 127 n 139 SER 127 H n 140 128 H n 141 129 H n 142 130 H n 143 131 H n 144 132 H GLY 133 n 145 GLY 133 H GLY 134 n 146 GLY 134 H THR 135 n 147 THR 135 H ALA 136 n 148 ALA 136 H ALA 137 n 149 ALA 137 H LEU 138 n 150 LEU 138 H GLY 139 n 151 GLY 139 H CYS 140 n 152 CYS 140 H LEU 141 n 153 LEU 141 H VAL 142 n 154 VAL 142 H LYS 143 n 155 LYS 143 H ASP 144 n 156 ASP 144 H TYR 145 n 157 TYR 145 H PHE 146 n 158 PHE 146 H PRO 147 n 159 PRO 147 H GLU 148 n 160 GLU 148 H PRO 149 n 161 PRO 149 H VAL 150 n 162 VAL 150 H THR 151 n 163 THR 151 H VAL 152 n 164 VAL 152 H SER 153 n 165 SER 153 H TRP 154 n 166 TRP 154 H ASN 155 n 167 ASN 155 H SER 156 n 168 SER 156 H GLY 157 n 169 GLY 157 H ALA 158 n 170 ALA 158 H LEU 159 n 171 LEU 159 H THR 160 n 172 THR 160 H SER 161 n 173 SER 161 H GLY 162 n 174 GLY 162 H VAL 163 n 175 VAL 163 H HIS 164 n 176 HIS 164 H THR 165 n 177 THR 165 H PHE 166 n 178 PHE 166 H PRO 167 n 179 PRO 167 H ALA 168 n 180 ALA 168 H VAL 169 n 181 VAL 169 H LEU 170 n 182 LEU 170 H GLN 171 n 183 GLN 171 H SER 172 n 184 SER 172 H SER 173 n 185 SER 173 H GLY 174 n 186 GLY 174 H LEU 175 n 187 LEU 175 H TYR 176 n 188 TYR 176 H SER 177 n 189 SER 177 H LEU 178 n 190 LEU 178 H SER 179 n 191 SER 179 H SER 180 n 192 SER 180 H VAL 181 n 193 VAL 181 H VAL 182 n 194 VAL 182 H THR 183 n 195 THR 183 H VAL 184 n 196 VAL 184 H PRO 185 n 197 PRO 185 H SER 186 n 198 SER 186 H SER 187 n 199 SER 187 H SER 188 n 200 SER 188 H LEU 189 n 201 LEU 189 H GLY 190 n 202 GLY 190 H THR 191 n 203 THR 191 H GLN 192 n 204 GLN 192 H THR 193 n 205 THR 193 H TYR 194 n 206 TYR 194 H ILE 195 n 207 ILE 195 H CYS 196 n 208 CYS 196 H ASN 197 n 209 ASN 197 H VAL 198 n 210 VAL 198 H ASN 199 n 211 ASN 199 H HIS 200 n 212 HIS 200 H LYS 201 n 213 LYS 201 H PRO 202 n 214 PRO 202 H SER 203 n 215 SER 203 H ASN 204 n 216 ASN 204 H THR 205 n 217 THR 205 H LYS 206 n 218 LYS 206 H VAL 207 n 219 VAL 207 H ASP 208 n 220 ASP 208 H LYS 209 n 221 LYS 209 H LYS 210 n 222 LYS 210 H VAL 211 n 223 VAL 211 H GLU 212 n 224 GLU 212 H PRO 213 n 225 PRO 213 H LYS 214 n 226 LYS 214 H SER 215 n 227 SER 215 H n 228 216 H GLU 1 n 1 GLU 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L GLY 9 n 9 GLY 9 L THR 10 n 10 THR 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L LEU 13 n 13 LEU 13 L SER 14 n 14 SER 14 L PRO 15 n 15 PRO 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L THR 18 n 18 THR 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L LEU 21 n 21 LEU 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L THR 24 n 24 THR 24 L ALA 25 n 25 ALA 25 L ALA 26 n 26 ALA 26 L SER 27 n 27 SER 27 L TYR 30 n 28 TYR 30 L GLY 31 n 29 GLY 31 L HIS 32 n 30 HIS 32 L MET 33 n 31 MET 33 L THR 34 n 32 THR 34 L TRP 35 n 33 TRP 35 L TYR 36 n 34 TYR 36 L GLN 37 n 35 GLN 37 L LYS 38 n 36 LYS 38 L LYS 39 n 37 LYS 39 L PRO 40 n 38 PRO 40 L GLY 41 n 39 GLY 41 L GLN 42 n 40 GLN 42 L PRO 43 n 41 PRO 43 L PRO 44 n 42 PRO 44 L LYS 45 n 43 LYS 45 L LEU 46 n 44 LEU 46 L LEU 47 n 45 LEU 47 L ILE 48 n 46 ILE 48 L PHE 49 n 47 PHE 49 L ALA 50 n 48 ALA 50 L THR 51 n 49 THR 51 L SER 52 n 50 SER 52 L LYS 53 n 51 LYS 53 L ARG 54 n 52 ARG 54 L ALA 55 n 53 ALA 55 L SER 56 n 54 SER 56 L GLY 57 n 55 GLY 57 L ILE 58 n 56 ILE 58 L PRO 59 n 57 PRO 59 L ASP 60 n 58 ASP 60 L ARG 61 n 59 ARG 61 L PHE 62 n 60 PHE 62 L SER 63 n 61 SER 63 L GLY 64 n 62 GLY 64 L SER 65 n 63 SER 65 L GLN 66 n 64 GLN 66 L PHE 67 n 65 PHE 67 L GLY 68 n 66 GLY 68 L LYS 69 n 67 LYS 69 L GLN 70 n 68 GLN 70 L TYR 71 n 69 TYR 71 L THR 72 n 70 THR 72 L LEU 73 n 71 LEU 73 L THR 74 n 72 THR 74 L ILE 75 n 73 ILE 75 L THR 76 n 74 THR 76 L ARG 77 n 75 ARG 77 L MET 78 n 76 MET 78 L GLU 79 n 77 GLU 79 L PRO 80 n 78 PRO 80 L GLU 81 n 79 GLU 81 L ASP 82 n 80 ASP 82 L PHE 83 n 81 PHE 83 L ALA 84 n 82 ALA 84 L ARG 85 n 83 ARG 85 L TYR 86 n 84 TYR 86 L TYR 87 n 85 TYR 87 L CYS 88 n 86 CYS 88 L GLN 89 n 87 GLN 89 L GLN 90 n 88 GLN 90 L LEU 91 n 89 LEU 91 L GLU 96 n 90 GLU 96 L PHE 97 n 91 PHE 97 L PHE 98 n 92 PHE 98 L GLY 99 n 93 GLY 99 L GLN 100 n 94 GLN 100 L GLY 101 n 95 GLY 101 L THR 102 n 96 THR 102 L ARG 103 n 97 ARG 103 L LEU 104 n 98 LEU 104 L GLU 105 n 99 GLU 105 L ILE 106 n 100 ILE 106 L ARG 107 n 101 ARG 107 L ARG 108 n 102 ARG 108 L THR 109 n 103 THR 109 L VAL 110 n 104 VAL 110 L ALA 111 n 105 ALA 111 L ALA 112 n 106 ALA 112 L PRO 113 n 107 PRO 113 L SER 114 n 108 SER 114 L VAL 115 n 109 VAL 115 L PHE 116 n 110 PHE 116 L ILE 117 n 111 ILE 117 L PHE 118 n 112 PHE 118 L PRO 119 n 113 PRO 119 L PRO 120 n 114 PRO 120 L SER 121 n 115 SER 121 L ASP 122 n 116 ASP 122 L GLU 123 n 117 GLU 123 L GLN 124 n 118 GLN 124 L LEU 125 n 119 LEU 125 L LYS 126 n 120 LYS 126 L SER 127 n 121 SER 127 L GLY 128 n 122 GLY 128 L THR 129 n 123 THR 129 L ALA 130 n 124 ALA 130 L SER 131 n 125 SER 131 L VAL 132 n 126 VAL 132 L VAL 133 n 127 VAL 133 L CYS 134 n 128 CYS 134 L LEU 135 n 129 LEU 135 L LEU 136 n 130 LEU 136 L ASN 137 n 131 ASN 137 L ASN 138 n 132 ASN 138 L PHE 139 n 133 PHE 139 L TYR 140 n 134 TYR 140 L PRO 141 n 135 PRO 141 L ARG 142 n 136 ARG 142 L GLU 143 n 137 GLU 143 L ALA 144 n 138 ALA 144 L LYS 145 n 139 LYS 145 L VAL 146 n 140 VAL 146 L GLN 147 n 141 GLN 147 L TRP 148 n 142 TRP 148 L LYS 149 n 143 LYS 149 L VAL 150 n 144 VAL 150 L ASP 151 n 145 ASP 151 L ASN 152 n 146 ASN 152 L ALA 153 n 147 ALA 153 L LEU 154 n 148 LEU 154 L GLN 155 n 149 GLN 155 L SER 156 n 150 SER 156 L GLY 157 n 151 GLY 157 L ASN 158 n 152 ASN 158 L SER 159 n 153 SER 159 L GLN 160 n 154 GLN 160 L GLU 161 n 155 GLU 161 L SER 162 n 156 SER 162 L VAL 163 n 157 VAL 163 L THR 164 n 158 THR 164 L GLU 165 n 159 GLU 165 L GLN 166 n 160 GLN 166 L ASP 167 n 161 ASP 167 L SER 168 n 162 SER 168 L LYS 169 n 163 LYS 169 L ASP 170 n 164 ASP 170 L SER 171 n 165 SER 171 L THR 172 n 166 THR 172 L TYR 173 n 167 TYR 173 L SER 174 n 168 SER 174 L LEU 175 n 169 LEU 175 L SER 176 n 170 SER 176 L SER 177 n 171 SER 177 L THR 178 n 172 THR 178 L LEU 179 n 173 LEU 179 L THR 180 n 174 THR 180 L LEU 181 n 175 LEU 181 L SER 182 n 176 SER 182 L LYS 183 n 177 LYS 183 L ALA 184 n 178 ALA 184 L ASP 185 n 179 ASP 185 L TYR 186 n 180 TYR 186 L GLU 187 n 181 GLU 187 L LYS 188 n 182 LYS 188 L HIS 189 n 183 HIS 189 L LYS 190 n 184 LYS 190 L VAL 191 n 185 VAL 191 L TYR 192 n 186 TYR 192 L ALA 193 n 187 ALA 193 L CYS 194 n 188 CYS 194 L GLU 195 n 189 GLU 195 L VAL 196 n 190 VAL 196 L THR 197 n 191 THR 197 L HIS 198 n 192 HIS 198 L GLN 199 n 193 GLN 199 L GLY 200 n 194 GLY 200 L LEU 201 n 195 LEU 201 L SER 202 n 196 SER 202 L SER 203 n 197 SER 203 L PRO 204 n 198 PRO 204 L VAL 205 n 199 VAL 205 L THR 206 n 200 THR 206 L LYS 207 n 201 LYS 207 L SER 208 n 202 SER 208 L PHE 209 n 203 PHE 209 L ASN 210 n 204 ASN 210 L ARG 211 n 205 ARG 211 L GLY 212 n 206 GLY 212 L GLU 213 n 207 GLU 213 L CYS 214 n 208 CYS 214 L 1.6014 -0.6235 -1.0290 0.9787 0.3716 0.9498 -0.0231 0.1198 -0.1797 -0.0352 -0.0144 0.1216 -0.0373 0.0454 0.0375 -0.1664 -0.0586 0.1713 -0.3713 -0.0357 0.0587 refined 7.0622 -16.8376 23.6352 X-RAY DIFFRACTION G 252 G 477 X-RAY DIFFRACTION 1 { *|* } H 1 H 215 X-RAY DIFFRACTION 1 { *|* } L 1 L 214 X-RAY DIFFRACTION 1 { *|* } L 301 L 301 X-RAY DIFFRACTION 1 { *|* } author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 G N LEU 260 A N LEU 9 G O GLY 451 A O GLY 160 G O ILE 449 A O ILE 158 G N VAL 292 A N VAL 41 G N ASN 295 A N ASN 44 G O VAL 332 A O VAL 56 G N CYS 331 A N CYS 55 G O LEU 416 A O LEU 136 G O ARG 419 A O ARG 139 G N TYR 384 A N TYR 106 G O PHE 383 A O PHE 105 G N PHE 376 A N PHE 98 G N LYS 273 A N LYS 22 G O ILE 285 A O ILE 34 G N VAL 292 A N VAL 41 G O ILE 449 A O ILE 158 G N THR 455 A N THR 164 G O ARG 469 A O ARG 178 G O GLU 466 A O GLU 175 G N ILE 360 A N ILE 82 G N ILE 359 A N ILE 81 G O TRP 395 A O TRP 117 H N VAL 5 B N VAL 5 H O TRP 23 B O TRP 23 H N VAL 20 B N VAL 20 H O MET 80 B O MET 83 H O HIS 79 B O HIS 82 H N THR 70 B N THR 73 H N LYS 12 B N LYS 12 H O VAL 110 B O VAL 122 H O THR 107 B O THR 119 H N TYR 90 B N TYR 96 H O THR 89 B O THR 95 H N GLN 39 B N GLN 40 H N ARG 38 B N ARG 39 H O GLU 46 B O GLU 47 H N TRP 50 B N TRP 51 H O ASN 57 B O ASN 60 H N LYS 12 B N LYS 12 H O VAL 110 B O VAL 122 H O THR 107 B O THR 119 H N TYR 90 B N TYR 96 H N ARG 94 B N ARG 100 H O LEU 102 B O LEU 114 H N LEU 124 B N LEU 136 H O GLY 139 B O GLY 151 H N LEU 138 B N LEU 150 H O VAL 182 B O VAL 194 H O VAL 181 B O VAL 193 H N HIS 164 B N HIS 176 H N LEU 124 B N LEU 136 H O GLY 139 B O GLY 151 H N LEU 138 B N LEU 150 H O VAL 182 B O VAL 194 H O SER 177 B O SER 189 H N VAL 169 B N VAL 181 H N THR 151 B N THR 163 H O ASN 199 B O ASN 211 H N CYS 196 B N CYS 208 H O LYS 209 B O LYS 221 L N THR 5 C N THR 5 L O THR 24 C O THR 24 L N LEU 21 C N LEU 21 L O LEU 73 C O LEU 71 L O GLN 70 C O GLN 68 L N PHE 67 C N PHE 65 L N LEU 11 C N LEU 11 L O ARG 103 C O ARG 97 L O THR 102 C O THR 96 L N TYR 86 C N TYR 84 L O ARG 85 C O ARG 83 L N LYS 38 C N LYS 36 L N GLN 37 C N GLN 35 L O LYS 45 C O LYS 43 L N PHE 49 C N PHE 47 L O LYS 53 C O LYS 51 L N LEU 11 C N LEU 11 L O ARG 103 C O ARG 97 L O THR 102 C O THR 96 L N TYR 86 C N TYR 84 L N GLN 90 C N GLN 88 L O PHE 97 C O PHE 91 L N SER 114 C N SER 108 L O ASN 137 C O ASN 131 L N ALA 130 C N ALA 124 L O LEU 181 C O LEU 175 L O SER 176 C O SER 170 L N SER 162 C N SER 156 L O GLN 155 C O GLN 149 L N TRP 148 C N TRP 142 L N LYS 149 C N LYS 143 L O ALA 193 C O ALA 187 L N VAL 196 C N VAL 190 L O VAL 205 C O VAL 199 1 G GLY 407 A GLY 127 1 Y 1 G THR 408 A THR 128 1 Y 1 G GLU 409 A GLU 129 1 Y 1 G SER 410 A SER 130 1 Y 1 G ASN 411 A ASN 131 1 Y 1 G ASP 412 A ASP 132 1 Y 1 G ASN 478 A ASN 187 1 Y 1 G TRP 479 A TRP 188 1 Y 1 G ARG 480 A ARG 189 1 Y 1 G SER 481 A SER 190 1 Y 1 H SER 128 B SER 140 1 Y 1 H LYS 129 B LYS 141 1 Y 1 H SER 130 B SER 142 1 Y 1 H THR 131 B THR 143 1 Y 1 H SER 132 B SER 144 1 Y 1 H CYS 216 B CYS 228 1 Y 1 G PRO 253 -85.77 -156.21 1 G LYS 268 -121.10 -60.12 1 G ASP 276 -165.69 107.22 1 G ASN 302 -118.79 51.15 1 G ASN 392 -176.03 46.83 1 G GLU 397 -75.79 -164.17 1 G PRO 437 -33.68 130.61 1 G VAL 442 -114.94 65.91 1 G THR 464 56.49 -116.62 1 H VAL 2 -160.52 -158.47 B 1 H VAL 52 -96.30 -76.36 1 H PHE 97 -56.81 107.02 1 H THR 116 -57.55 108.24 1 H PRO 147 -93.43 -158.04 1 L LEU 4 92.97 11.17 1 L SER 7 -170.31 148.20 1 L ALA 26 -63.64 1.28 1 L THR 51 74.12 -56.55 1 L LEU 91 61.69 -123.28 1 L ASN 158 -151.02 -9.46 41.38 6.9102 0.0000 1.8997 -6.0238 0.0000 -0.8864 0.8262 0.7166 0.3199 0.2483 0.2534 2.85 46.78 1075 17504 14941 7.19 85.41 RANDOM 1 THROUGHOUT 0.0 0 MOLECULAR REPLACEMENT PDB ENTRY 3SE9 MLHL 0.508 2.85 46.78 0 4690 1 0 4689 0.009 4801 HARMONIC 2.00 1.19 6518 HARMONIC 2.00 1629 SINUSOIDAL 2.00 111 HARMONIC 2.00 700 HARMONIC 5.00 4801 HARMONIC 20.00 2.43 22.68 639 SEMIHARMONIC 5.00 4978 SEMIHARMONIC 4.00 0.3110 0.2345 0.2405 3.05 180 2224 2404 8 7.49 85.41 47.83 2.85 50.0 4I3S 14947 2 2 0.225 0.225 1 6.21 2 85.4 0.90 2.85 2.93 2.01 0.90 1 1.3 76.3 data scaling XDS phasing PHASER refinement BUSTER 2.10.0 data reduction XDS Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21 1 N N 2 N N 3 N N 4 N N The Biological unit is identical to that found in the asymmetric unit. The Biological unit is identical to that found in the asymmetric unit. The Biological unit is identical to that found in the asymmetric unit. G ASN 334 A ASN 58 HELX_P G ARG 350 A ARG 74 1 1 17 G ASP 368 A ASP 90 HELX_P G THR 373 A THR 95 1 2 6 H SER 25 B SER 25 HELX_P H GLU 30 B GLU 30 1 3 6 H SER 60 B SER 63 HELX_P H GLN 65 B GLN 68 1 4 6 H THR 83 B THR 89 HELX_P H THR 87 B THR 93 5 5 5 H SER 156 B SER 168 HELX_P H ALA 158 B ALA 170 5 6 3 L GLU 79 C GLU 77 HELX_P L PHE 83 C PHE 81 5 7 5 L SER 121 C SER 115 HELX_P L LYS 126 C LYS 120 1 8 6 L LYS 183 C LYS 177 HELX_P L LYS 188 C LYS 182 1 9 6 disulf 2.900 G CYS 296 A SG CYS 45 1_555 G CYS 331 A SG CYS 55 1_555 disulf 2.463 G CYS 358 A SG CYS 80 1_555 G CYS 465 A SG CYS 174 1_555 disulf 2.502 G CYS 378 A SG CYS 100 1_555 G CYS 445 A SG CYS 154 1_555 disulf 1.537 none G CYS 385 A SG CYS 107 1_555 G CYS 418 A SG CYS 138 1_555 disulf 2.816 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 98 1_555 disulf 2.998 H CYS 140 B SG CYS 152 1_555 H CYS 196 B SG CYS 208 1_555 disulf 2.541 L CYS 134 C SG CYS 128 1_555 L CYS 194 C SG CYS 188 1_555 metalc 2.642 L GLU 143 C OE1 GLU 137 1_555 L CA 301 D CA CA 1_555 Viral Protein/Immune System Antibody Affinity, Antibody Specificity, Binding Sites, HIV Infections, Antibodies, HIV Envelope Protein gp120, AIDS Vaccines, Amino Acid Sequence, Antigens, Epitopes, HIV Antibodies, CD4, Somatic Mutation, Sequence engineering, Complementarity Determining Regions, Immunoglobulin Fab Fragments, Sera, Viral Protein-Immune System complex G ASN 301 A ASN 50 1 G ASN 302 A ASN 51 0.55 G GLY 433 A GLY 144 1 G ALA 436 A ALA 145 2.68 G GLY 441 A GLY 150 1 G VAL 442 A VAL 151 1.23 G GLY 472 A GLY 181 1 G GLY 473 A GLY 182 0.35 H GLN 1 B GLN 1 1 H VAL 2 B VAL 2 -1.74 H GLN 3 B GLN 3 1 H LEU 4 B LEU 4 -1.62 H PHE 146 B PHE 158 1 H PRO 147 B PRO 159 -5.75 H GLU 148 B GLU 160 1 H PRO 149 B PRO 161 6.41 L SER 7 C SER 7 1 L PRO 8 C PRO 8 -2.57 L TYR 140 C TYR 134 1 L PRO 141 C PRO 135 -5.05 4I3S PDB 1 4I3S 4I3S PDB 2 4I3S 4I3S PDB 3 4I3S 252 481 4I3S 252 481 4I3S G 1 1 190 1 216 4I3S 1 216 4I3S H 2 1 228 1 214 4I3S 1 214 4I3S L 3 1 208 7 6 4 6 4 4 4 3 4 6 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel G LEU 259 A LEU 8 G LEU 261 A LEU 10 G ILE 443 A ILE 152 G ARG 456 A ARG 165 G ILE 284 A ILE 33 G ARG 298 A ARG 47 G TYR 330 A TYR 54 G VAL 333 A VAL 57 G ILE 414 A ILE 134 G ILE 420 A ILE 140 G GLU 381 A GLU 103 G CYS 385 A CYS 107 G HIS 374 A HIS 96 G CYS 378 A CYS 100 G ARG 271 A ARG 20 G LYS 273 A LYS 22 G ILE 284 A ILE 33 G ARG 298 A ARG 47 G ILE 443 A ILE 152 G ARG 456 A ARG 165 G GLU 466 A GLU 175 G PRO 470 A PRO 179 G ILE 359 A ILE 81 G PHE 361 A PHE 83 G SER 393 A SER 115 G TRP 395 A TRP 117 H VAL 5 B VAL 5 H GLN 6 B GLN 6 H VAL 18 B VAL 18 H TRP 23 B TRP 23 H THR 77 B THR 80 H ILE 82 B ILE 85 H VAL 67 B VAL 70 H ASP 72 B ASP 75 H GLY 10 B GLY 10 H LYS 12 B LYS 12 H THR 107 B THR 119 H VAL 111 B VAL 123 H ALA 88 B ALA 94 H LYS 96 B LYS 102 H THR 32 B THR 32 H GLN 39 B GLN 40 H GLU 46 B GLU 47 H LYS 52 B LYS 53 H VAL 56 B VAL 59 H PHE 58 B PHE 61 H GLY 10 B GLY 10 H LYS 12 B LYS 12 H THR 107 B THR 119 H VAL 111 B VAL 123 H ALA 88 B ALA 94 H LYS 96 B LYS 102 H PHE 100 B PHE 112 H TRP 103 B TRP 115 F H SER 120 B SER 132 H LEU 124 B LEU 136 H THR 135 B THR 147 H TYR 145 B TYR 157 H TYR 176 B TYR 188 H PRO 185 B PRO 197 H VAL 163 B VAL 175 H THR 165 B THR 177 H SER 120 B SER 132 H LEU 124 B LEU 136 H THR 135 B THR 147 H TYR 145 B TYR 157 H TYR 176 B TYR 188 H PRO 185 B PRO 197 H VAL 169 B VAL 181 H LEU 170 B LEU 182 H THR 151 B THR 163 H TRP 154 B TRP 166 H TYR 194 B TYR 206 H HIS 200 B HIS 212 H THR 205 B THR 217 H VAL 211 B VAL 223 L THR 5 C THR 5 L SER 7 C SER 7 L ALA 19 C ALA 19 L THR 24 C THR 24 L GLN 70 C GLN 68 L ILE 75 C ILE 73 L PHE 62 C PHE 60 L PHE 67 C PHE 65 L THR 10 C THR 10 L LEU 13 C LEU 13 L THR 102 C THR 96 L ILE 106 C ILE 100 L ARG 85 C ARG 83 L GLN 90 C GLN 88 L THR 34 C THR 32 L LYS 38 C LYS 36 L LYS 45 C LYS 43 L PHE 49 C PHE 47 L LYS 53 C LYS 51 L ARG 54 C ARG 52 L THR 10 C THR 10 L LEU 13 C LEU 13 L THR 102 C THR 96 L ILE 106 C ILE 100 L ARG 85 C ARG 83 L GLN 90 C GLN 88 L PHE 97 C PHE 91 L PHE 98 C PHE 92 L SER 114 C SER 108 L PHE 118 C PHE 112 L THR 129 C THR 123 L PHE 139 C PHE 133 L TYR 173 C TYR 167 L SER 182 C SER 176 L SER 159 C SER 153 L VAL 163 C VAL 157 L LEU 154 C LEU 148 L GLN 155 C GLN 149 L ALA 144 C ALA 138 L VAL 150 C VAL 144 L VAL 191 C VAL 185 L HIS 198 C HIS 192 L VAL 205 C VAL 199 L ASN 210 C ASN 204 BINDING SITE FOR RESIDUE CA L 301 L CA 301 Software 2 L GLU 105 C GLU 99 2 1_555 L GLU 143 C GLU 137 2 1_555 4 P 1 21 1