0.010150
0.005860
0.000000
0.000000
0.011720
0.000000
0.000000
0.000000
0.011110
0.000000
0.000000
0.000000
Shi, D.
Zhao, G.
Allewell, N.M.
Tuchman, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
98.521
98.521
90.009
C28 H45 N8 O21 P3 S
954.684
(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14,20-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-20-yl}amino)pentanedioic acid (non-preferred name)
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
N
Y
2
N
C
Y
3
N
N
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
N
Y
8
N
N
Y
9
N
C
Y
10
N
N
N
11
R
C
N
12
R
C
N
13
N
O
N
14
S
C
N
15
N
O
N
16
N
P
N
17
N
O
N
18
N
O
N
19
N
O
N
20
R
C
N
21
N
O
N
22
N
C
N
23
N
O
N
24
N
P
N
25
N
O
N
26
N
O
N
27
N
O
N
28
N
P
N
29
N
O
N
30
N
O
N
31
N
O
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
C
N
36
R
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
N
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
O
N
45
N
N
N
46
N
C
N
47
N
C
N
48
N
S
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
C
N
56
N
O
N
57
N
O
N
58
N
C
N
59
N
C
N
60
N
O
N
61
N
N
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
R
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
S
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
Y
248
N
C
Y
249
N
N
Y
250
N
C
Y
251
N
C
Y
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
S
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
N
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
S
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
N
384
N
C
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
S
N
411
N
O
N
412
N
O
N
413
N
O
N
414
N
O
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
R
C
N
420
N
O
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
N
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
N
470
N
O
N
471
N
O
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
N
488
N
C
N
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
Y
7
N
doub
Y
8
N
sing
N
9
N
sing
N
10
N
sing
Y
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
sing
Y
19
N
doub
Y
20
N
sing
Y
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
doub
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
sing
Y
249
N
doub
Y
250
N
doub
N
251
N
sing
Y
252
N
sing
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
Y
457
N
doub
Y
458
N
sing
Y
459
N
sing
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
430
1253
1258
10.1016/j.bbrc.2012.12.064
23261468
Structure of the complex of Neisseria gonorrhoeae N-acetyl-l-glutamate synthase with a bound bisubstrate analog.
2013
10.2210/pdb4i49/pdb
pdb_00004i49
298
1
IMAGE PLATE
2011-07-20
RIGAKU
Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
Cu FINE FOCUS
49235.492
Amino-acid acetyltransferase
2.3.1.1
1
man
polymer
954.684
(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14,20-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-20-yl}amino)pentanedioic acid (non-preferred name)
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
34
nat
water
N-acetylglutamate synthase
no
no
MGSSHHHHHHSSGLVPRGSHMNAPDSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTLNKLAADIGLLSQLGIRLVLI
HGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVID
GTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPDGTLAE
TLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHI
AALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKA
RGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR
MGSSHHHHHHSSGLVPRGSHMNAPDSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTLNKLAADIGLLSQLGIRLVLI
HGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVID
GTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPDGTLAE
TLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHI
AALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKA
RGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC53420
sample
argA, NGLG_00316
528360
Neisseria gonorrhoeae SK-93-1035
469008
Escherichia coli
BL21(DE3)
plasmid
pET28a
1
2.56
51.98
VAPOR DIFFUSION, SITTING DROP
5.6
100 mM Tri-Na citrate, 0.2M MgCl2, 8% PEG3350 , pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-09
1
1
2013-03-06
1
2
2017-11-15
1
3
2023-09-20
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same protein bound with CoA and Glu
Same protein bound with CoA and NAG
Same protein bound with AcCoA
Same protein bound with CoA and Arg
RCSB
Y
RCSB
2012-11-27
REL
REL
1C4
(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14,20-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-20-yl}amino)pentanedioic acid (non-preferred name)
SO4
SULFATE ION
HOH
water
3B8G
PDB
experimental model
1C4
437
2
1C4
1C4
501
A
SO4
1
3
SO4
SO4
502
A
HOH
1
4
HOH
HOH
601
A
HOH
2
4
HOH
HOH
602
A
HOH
3
4
HOH
HOH
603
A
HOH
4
4
HOH
HOH
604
A
HOH
5
4
HOH
HOH
605
A
HOH
6
4
HOH
HOH
606
A
HOH
7
4
HOH
HOH
607
A
HOH
8
4
HOH
HOH
608
A
HOH
9
4
HOH
HOH
609
A
HOH
10
4
HOH
HOH
610
A
HOH
11
4
HOH
HOH
611
A
HOH
12
4
HOH
HOH
612
A
HOH
13
4
HOH
HOH
613
A
HOH
14
4
HOH
HOH
614
A
HOH
15
4
HOH
HOH
615
A
HOH
16
4
HOH
HOH
616
A
HOH
17
4
HOH
HOH
617
A
HOH
18
4
HOH
HOH
618
A
HOH
19
4
HOH
HOH
619
A
HOH
20
4
HOH
HOH
620
A
HOH
21
4
HOH
HOH
621
A
HOH
22
4
HOH
HOH
622
A
HOH
23
4
HOH
HOH
623
A
HOH
24
4
HOH
HOH
624
A
HOH
25
4
HOH
HOH
625
A
HOH
26
4
HOH
HOH
626
A
HOH
27
4
HOH
HOH
627
A
HOH
28
4
HOH
HOH
628
A
HOH
29
4
HOH
HOH
629
A
HOH
30
4
HOH
HOH
630
A
HOH
31
4
HOH
HOH
631
A
HOH
32
4
HOH
HOH
632
A
HOH
33
4
HOH
HOH
633
A
HOH
34
4
HOH
HOH
634
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
n
23
3
A
n
24
4
A
ASP
5
n
25
ASP
5
A
SER
6
n
26
SER
6
A
PHE
7
n
27
PHE
7
A
VAL
8
n
28
VAL
8
A
ALA
9
n
29
ALA
9
A
HIS
10
n
30
HIS
10
A
PHE
11
n
31
PHE
11
A
ARG
12
n
32
ARG
12
A
GLU
13
n
33
GLU
13
A
ALA
14
n
34
ALA
14
A
ALA
15
n
35
ALA
15
A
PRO
16
n
36
PRO
16
A
TYR
17
n
37
TYR
17
A
ILE
18
n
38
ILE
18
A
ARG
19
n
39
ARG
19
A
GLN
20
n
40
GLN
20
A
MET
21
n
41
MET
21
A
ARG
22
n
42
ARG
22
A
GLY
23
n
43
GLY
23
A
THR
24
n
44
THR
24
A
THR
25
n
45
THR
25
A
LEU
26
n
46
LEU
26
A
VAL
27
n
47
VAL
27
A
ALA
28
n
48
ALA
28
A
GLY
29
n
49
GLY
29
A
ILE
30
n
50
ILE
30
A
ASP
31
n
51
ASP
31
A
GLY
32
n
52
GLY
32
A
ARG
33
n
53
ARG
33
A
LEU
34
n
54
LEU
34
A
LEU
35
n
55
LEU
35
A
GLU
36
n
56
GLU
36
A
GLY
37
n
57
GLY
37
A
GLY
38
n
58
GLY
38
A
THR
39
n
59
THR
39
A
LEU
40
n
60
LEU
40
A
ASN
41
n
61
ASN
41
A
LYS
42
n
62
LYS
42
A
LEU
43
n
63
LEU
43
A
ALA
44
n
64
ALA
44
A
ALA
45
n
65
ALA
45
A
ASP
46
n
66
ASP
46
A
ILE
47
n
67
ILE
47
A
GLY
48
n
68
GLY
48
A
LEU
49
n
69
LEU
49
A
LEU
50
n
70
LEU
50
A
SER
51
n
71
SER
51
A
GLN
52
n
72
GLN
52
A
LEU
53
n
73
LEU
53
A
GLY
54
n
74
GLY
54
A
ILE
55
n
75
ILE
55
A
ARG
56
n
76
ARG
56
A
LEU
57
n
77
LEU
57
A
VAL
58
n
78
VAL
58
A
LEU
59
n
79
LEU
59
A
ILE
60
n
80
ILE
60
A
HIS
61
n
81
HIS
61
A
GLY
62
n
82
GLY
62
A
ALA
63
n
83
ALA
63
A
TYR
64
n
84
TYR
64
A
HIS
65
n
85
HIS
65
A
PHE
66
n
86
PHE
66
A
LEU
67
n
87
LEU
67
A
ASP
68
n
88
ASP
68
A
ARG
69
n
89
ARG
69
A
LEU
70
n
90
LEU
70
A
ALA
71
n
91
ALA
71
A
ALA
72
n
92
ALA
72
A
ALA
73
n
93
ALA
73
A
GLN
74
n
94
GLN
74
A
GLY
75
n
95
GLY
75
A
ARG
76
n
96
ARG
76
A
THR
77
n
97
THR
77
A
PRO
78
n
98
PRO
78
A
HIS
79
n
99
HIS
79
A
TYR
80
n
100
TYR
80
A
CYS
81
n
101
CYS
81
A
ARG
82
n
102
ARG
82
A
GLY
83
n
103
GLY
83
A
LEU
84
n
104
LEU
84
A
ARG
85
n
105
ARG
85
A
VAL
86
n
106
VAL
86
A
THR
87
n
107
THR
87
A
ASP
88
n
108
ASP
88
A
GLU
89
n
109
GLU
89
A
THR
90
n
110
THR
90
A
SER
91
n
111
SER
91
A
LEU
92
n
112
LEU
92
A
GLY
93
n
113
GLY
93
A
GLN
94
n
114
GLN
94
A
ALA
95
n
115
ALA
95
A
GLN
96
n
116
GLN
96
A
GLN
97
n
117
GLN
97
A
PHE
98
n
118
PHE
98
A
ALA
99
n
119
ALA
99
A
GLY
100
n
120
GLY
100
A
THR
101
n
121
THR
101
A
VAL
102
n
122
VAL
102
A
ARG
103
n
123
ARG
103
A
SER
104
n
124
SER
104
A
ARG
105
n
125
ARG
105
A
PHE
106
n
126
PHE
106
A
GLU
107
n
127
GLU
107
A
ALA
108
n
128
ALA
108
A
ALA
109
n
129
ALA
109
A
LEU
110
n
130
LEU
110
A
CYS
111
n
131
CYS
111
A
GLY
112
n
132
GLY
112
A
SER
113
n
133
SER
113
A
n
134
114
A
n
135
115
A
n
136
116
A
n
137
117
A
n
138
118
A
n
139
119
A
n
140
120
A
n
141
121
A
SER
122
n
142
SER
122
A
VAL
123
n
143
VAL
123
A
PRO
124
n
144
PRO
124
A
LEU
125
n
145
LEU
125
A
VAL
126
n
146
VAL
126
A
SER
127
n
147
SER
127
A
GLY
128
n
148
GLY
128
A
ASN
129
n
149
ASN
129
A
PHE
130
n
150
PHE
130
A
LEU
131
n
151
LEU
131
A
THR
132
n
152
THR
132
A
ALA
133
n
153
ALA
133
A
ARG
134
n
154
ARG
134
A
PRO
135
n
155
PRO
135
A
ILE
136
n
156
ILE
136
A
GLY
137
n
157
GLY
137
A
VAL
138
n
158
VAL
138
A
ILE
139
n
159
ILE
139
A
ASP
140
n
160
ASP
140
A
GLY
141
n
161
GLY
141
A
THR
142
n
162
THR
142
A
ASP
143
n
163
ASP
143
A
MET
144
n
164
MET
144
A
GLU
145
n
165
GLU
145
A
TYR
146
n
166
TYR
146
A
ALA
147
n
167
ALA
147
A
GLY
148
n
168
GLY
148
A
VAL
149
n
169
VAL
149
A
ILE
150
n
170
ILE
150
A
ARG
151
n
171
ARG
151
A
LYS
152
n
172
LYS
152
A
THR
153
n
173
THR
153
A
ASP
154
n
174
ASP
154
A
THR
155
n
175
THR
155
A
ALA
156
n
176
ALA
156
A
ALA
157
n
177
ALA
157
A
LEU
158
n
178
LEU
158
A
ARG
159
n
179
ARG
159
A
PHE
160
n
180
PHE
160
A
GLN
161
n
181
GLN
161
A
LEU
162
n
182
LEU
162
A
ASP
163
n
183
ASP
163
A
ALA
164
n
184
ALA
164
A
GLY
165
n
185
GLY
165
A
ASN
166
n
186
ASN
166
A
ILE
167
n
187
ILE
167
A
VAL
168
n
188
VAL
168
A
TRP
169
n
189
TRP
169
A
MET
170
n
190
MET
170
A
PRO
171
n
191
PRO
171
A
PRO
172
n
192
PRO
172
A
LEU
173
n
193
LEU
173
A
GLY
174
n
194
GLY
174
A
HIS
175
n
195
HIS
175
A
SER
176
n
196
SER
176
A
TYR
177
n
197
TYR
177
A
GLY
178
n
198
GLY
178
A
GLY
179
n
199
GLY
179
A
LYS
180
n
200
LYS
180
A
THR
181
n
201
THR
181
A
PHE
182
n
202
PHE
182
A
ASN
183
n
203
ASN
183
A
LEU
184
n
204
LEU
184
A
ASP
185
n
205
ASP
185
A
MET
186
n
206
MET
186
A
VAL
187
n
207
VAL
187
A
GLN
188
n
208
GLN
188
A
ALA
189
n
209
ALA
189
A
ALA
190
n
210
ALA
190
A
ALA
191
n
211
ALA
191
A
SER
192
n
212
SER
192
A
VAL
193
n
213
VAL
193
A
ALA
194
n
214
ALA
194
A
VAL
195
n
215
VAL
195
A
SER
196
n
216
SER
196
A
LEU
197
n
217
LEU
197
A
GLN
198
n
218
GLN
198
A
ALA
199
n
219
ALA
199
A
GLU
200
n
220
GLU
200
A
LYS
201
n
221
LYS
201
A
LEU
202
n
222
LEU
202
A
VAL
203
n
223
VAL
203
A
TYR
204
n
224
TYR
204
A
LEU
205
n
225
LEU
205
A
THR
206
n
226
THR
206
A
LEU
207
n
227
LEU
207
A
SER
208
n
228
SER
208
A
ASP
209
n
229
ASP
209
A
GLY
210
n
230
GLY
210
A
ILE
211
n
231
ILE
211
A
SER
212
n
232
SER
212
A
ARG
213
n
233
ARG
213
A
PRO
214
n
234
PRO
214
A
ASP
215
n
235
ASP
215
A
GLY
216
n
236
GLY
216
A
THR
217
n
237
THR
217
A
LEU
218
n
238
LEU
218
A
ALA
219
n
239
ALA
219
A
GLU
220
n
240
GLU
220
A
THR
221
n
241
THR
221
A
LEU
222
n
242
LEU
222
A
SER
223
n
243
SER
223
A
ALA
224
n
244
ALA
224
A
GLN
225
n
245
GLN
225
A
GLU
226
n
246
GLU
226
A
ALA
227
n
247
ALA
227
A
GLN
228
n
248
GLN
228
A
SER
229
n
249
SER
229
A
LEU
230
n
250
LEU
230
A
ALA
231
n
251
ALA
231
A
GLU
232
n
252
GLU
232
A
HIS
233
n
253
HIS
233
A
ALA
234
n
254
ALA
234
A
ALA
235
n
255
ALA
235
A
SER
236
n
256
SER
236
A
GLU
237
n
257
GLU
237
A
THR
238
n
258
THR
238
A
ARG
239
n
259
ARG
239
A
ARG
240
n
260
ARG
240
A
LEU
241
n
261
LEU
241
A
ILE
242
n
262
ILE
242
A
SER
243
n
263
SER
243
A
SER
244
n
264
SER
244
A
ALA
245
n
265
ALA
245
A
VAL
246
n
266
VAL
246
A
ALA
247
n
267
ALA
247
A
ALA
248
n
268
ALA
248
A
LEU
249
n
269
LEU
249
A
GLU
250
n
270
GLU
250
A
GLY
251
n
271
GLY
251
A
GLY
252
n
272
GLY
252
A
VAL
253
n
273
VAL
253
A
HIS
254
n
274
HIS
254
A
ARG
255
n
275
ARG
255
A
VAL
256
n
276
VAL
256
A
GLN
257
n
277
GLN
257
A
ILE
258
n
278
ILE
258
A
LEU
259
n
279
LEU
259
A
ASN
260
n
280
ASN
260
A
GLY
261
n
281
GLY
261
A
ALA
262
n
282
ALA
262
A
ALA
263
n
283
ALA
263
A
ASP
264
n
284
ASP
264
A
GLY
265
n
285
GLY
265
A
SER
266
n
286
SER
266
A
LEU
267
n
287
LEU
267
A
LEU
268
n
288
LEU
268
A
GLN
269
n
289
GLN
269
A
GLU
270
n
290
GLU
270
A
LEU
271
n
291
LEU
271
A
PHE
272
n
292
PHE
272
A
THR
273
n
293
THR
273
A
ARG
274
n
294
ARG
274
A
ASN
275
n
295
ASN
275
A
GLY
276
n
296
GLY
276
A
ILE
277
n
297
ILE
277
A
GLY
278
n
298
GLY
278
A
THR
279
n
299
THR
279
A
SER
280
n
300
SER
280
A
ILE
281
n
301
ILE
281
A
ALA
282
n
302
ALA
282
A
LYS
283
n
303
LYS
283
A
GLU
284
n
304
GLU
284
A
ALA
285
n
305
ALA
285
A
PHE
286
n
306
PHE
286
A
VAL
287
n
307
VAL
287
A
SER
288
n
308
SER
288
A
ILE
289
n
309
ILE
289
A
ARG
290
n
310
ARG
290
A
GLN
291
n
311
GLN
291
A
ALA
292
n
312
ALA
292
A
HIS
293
n
313
HIS
293
A
SER
294
n
314
SER
294
A
GLY
295
n
315
GLY
295
A
ASP
296
n
316
ASP
296
A
ILE
297
n
317
ILE
297
A
PRO
298
n
318
PRO
298
A
HIS
299
n
319
HIS
299
A
ILE
300
n
320
ILE
300
A
ALA
301
n
321
ALA
301
A
ALA
302
n
322
ALA
302
A
LEU
303
n
323
LEU
303
A
ILE
304
n
324
ILE
304
A
ARG
305
n
325
ARG
305
A
PRO
306
n
326
PRO
306
A
LEU
307
n
327
LEU
307
A
GLU
308
n
328
GLU
308
A
GLU
309
n
329
GLU
309
A
GLN
310
n
330
GLN
310
A
GLY
311
n
331
GLY
311
A
ILE
312
n
332
ILE
312
A
LEU
313
n
333
LEU
313
A
LEU
314
n
334
LEU
314
A
HIS
315
n
335
HIS
315
A
ARG
316
n
336
ARG
316
A
SER
317
n
337
SER
317
A
ARG
318
n
338
ARG
318
A
GLU
319
n
339
GLU
319
A
TYR
320
n
340
TYR
320
A
LEU
321
n
341
LEU
321
A
GLU
322
n
342
GLU
322
A
ASN
323
n
343
ASN
323
A
HIS
324
n
344
HIS
324
A
ILE
325
n
345
ILE
325
A
SER
326
n
346
SER
326
A
GLU
327
n
347
GLU
327
A
PHE
328
n
348
PHE
328
A
SER
329
n
349
SER
329
A
ILE
330
n
350
ILE
330
A
LEU
331
n
351
LEU
331
A
GLU
332
n
352
GLU
332
A
HIS
333
n
353
HIS
333
A
ASP
334
n
354
ASP
334
A
GLY
335
n
355
GLY
335
A
ASN
336
n
356
ASN
336
A
LEU
337
n
357
LEU
337
A
TYR
338
n
358
TYR
338
A
GLY
339
n
359
GLY
339
A
CYS
340
n
360
CYS
340
A
ALA
341
n
361
ALA
341
A
ALA
342
n
362
ALA
342
A
LEU
343
n
363
LEU
343
A
LYS
344
n
364
LYS
344
A
THR
345
n
365
THR
345
A
PHE
346
n
366
PHE
346
A
ALA
347
n
367
ALA
347
A
GLU
348
n
368
GLU
348
A
ALA
349
n
369
ALA
349
A
ASP
350
n
370
ASP
350
A
CYS
351
n
371
CYS
351
A
GLY
352
n
372
GLY
352
A
GLU
353
n
373
GLU
353
A
ILE
354
n
374
ILE
354
A
ALA
355
n
375
ALA
355
A
CYS
356
n
376
CYS
356
A
LEU
357
n
377
LEU
357
A
ALA
358
n
378
ALA
358
A
VAL
359
n
379
VAL
359
A
SER
360
n
380
SER
360
A
PRO
361
n
381
PRO
361
A
GLN
362
n
382
GLN
362
A
ALA
363
n
383
ALA
363
A
GLN
364
n
384
GLN
364
A
ASP
365
n
385
ASP
365
A
GLY
366
n
386
GLY
366
A
GLY
367
n
387
GLY
367
A
TYR
368
n
388
TYR
368
A
GLY
369
n
389
GLY
369
A
GLU
370
n
390
GLU
370
A
ARG
371
n
391
ARG
371
A
LEU
372
n
392
LEU
372
A
LEU
373
n
393
LEU
373
A
ALA
374
n
394
ALA
374
A
HIS
375
n
395
HIS
375
A
ILE
376
n
396
ILE
376
A
ILE
377
n
397
ILE
377
A
ASP
378
n
398
ASP
378
A
LYS
379
n
399
LYS
379
A
ALA
380
n
400
ALA
380
A
ARG
381
n
401
ARG
381
A
GLY
382
n
402
GLY
382
A
ILE
383
n
403
ILE
383
A
GLY
384
n
404
GLY
384
A
ILE
385
n
405
ILE
385
A
SER
386
n
406
SER
386
A
ARG
387
n
407
ARG
387
A
LEU
388
n
408
LEU
388
A
PHE
389
n
409
PHE
389
A
ALA
390
n
410
ALA
390
A
LEU
391
n
411
LEU
391
A
SER
392
n
412
SER
392
A
THR
393
n
413
THR
393
A
ASN
394
n
414
ASN
394
A
THR
395
n
415
THR
395
A
GLY
396
n
416
GLY
396
A
GLU
397
n
417
GLU
397
A
TRP
398
n
418
TRP
398
A
PHE
399
n
419
PHE
399
A
ALA
400
n
420
ALA
400
A
GLU
401
n
421
GLU
401
A
ARG
402
n
422
ARG
402
A
GLY
403
n
423
GLY
403
A
PHE
404
n
424
PHE
404
A
GLN
405
n
425
GLN
405
A
THR
406
n
426
THR
406
A
ALA
407
n
427
ALA
407
A
SER
408
n
428
SER
408
A
GLU
409
n
429
GLU
409
A
ASP
410
n
430
ASP
410
A
GLU
411
n
431
GLU
411
A
LEU
412
n
432
LEU
412
A
PRO
413
n
433
PRO
413
A
GLU
414
n
434
GLU
414
A
THR
415
n
435
THR
415
A
ARG
416
n
436
ARG
416
A
ARG
417
n
437
ARG
417
A
LYS
418
n
438
LYS
418
A
ASP
419
n
439
ASP
419
A
TYR
420
n
440
TYR
420
A
ARG
421
n
441
ARG
421
A
SER
422
n
442
SER
422
A
ASN
423
n
443
ASN
423
A
GLY
424
n
444
GLY
424
A
ARG
425
n
445
ARG
425
A
ASN
426
n
446
ASN
426
A
SER
427
n
447
SER
427
A
HIS
428
n
448
HIS
428
A
ILE
429
n
449
ILE
429
A
LEU
430
n
450
LEU
430
A
VAL
431
n
451
VAL
431
A
ARG
432
n
452
ARG
432
A
ARG
433
n
453
ARG
433
A
LEU
434
n
454
LEU
434
A
HIS
435
n
455
HIS
435
A
ARG
436
n
456
ARG
436
A
author_and_software_defined_assembly
PISA
6
hexameric
22380
-191
103610
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_554
-y,-x,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-90.0090000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_554
-x+y,y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-90.0090000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_554
x,x-y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-90.0090000000
A
N
VAL
126
A
N
VAL
146
A
O
TRP
169
A
O
TRP
189
A
O
MET
170
A
O
MET
190
A
N
LEU
59
A
N
LEU
79
A
O
VAL
58
A
O
VAL
78
A
N
ALA
28
A
N
ALA
48
A
N
GLY
29
A
N
GLY
49
A
O
LEU
205
A
O
LEU
225
A
N
TYR
204
A
N
TYR
224
A
O
GLN
257
A
O
GLN
277
A
N
ILE
258
A
N
ILE
278
A
O
THR
279
A
O
THR
299
A
O
SER
280
A
O
SER
300
A
N
LEU
222
A
N
LEU
242
A
N
CYS
81
A
N
CYS
101
A
O
LEU
84
A
O
LEU
104
A
N
THR
132
A
N
THR
152
A
O
ARG
151
A
O
ARG
171
A
N
GLY
148
A
N
GLY
168
A
O
ASN
183
A
O
ASN
203
A
O
PHE
182
A
O
PHE
202
A
N
GLY
174
A
N
GLY
194
A
O
HIS
175
A
O
HIS
195
A
N
ALA
133
A
N
ALA
153
A
N
ILE
139
A
N
ILE
159
A
O
THR
142
A
O
THR
162
A
N
ARG
290
A
N
ARG
310
A
O
ILE
330
A
O
ILE
350
A
N
LEU
331
A
N
LEU
351
A
O
TYR
338
A
O
TYR
358
A
N
ALA
342
A
N
ALA
362
A
O
ALA
355
A
O
ALA
375
A
N
ILE
354
A
N
ILE
374
A
O
PHE
389
A
O
PHE
409
A
N
SER
392
A
N
SER
412
A
O
HIS
428
A
O
HIS
448
A
O
ILE
429
A
O
ILE
449
A
N
ALA
407
A
N
ALA
427
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
ASN
2
A
ASN
22
1
Y
1
A
ALA
3
A
ALA
23
1
Y
1
A
PRO
4
A
PRO
24
1
Y
1
A
VAL
114
A
VAL
134
1
Y
1
A
SER
115
A
SER
135
1
Y
1
A
GLY
116
A
GLY
136
1
Y
1
A
PHE
117
A
PHE
137
1
Y
1
A
ALA
118
A
ALA
138
1
Y
1
A
ARG
119
A
ARG
139
1
Y
1
A
ALA
120
A
ALA
140
1
Y
1
A
PRO
121
A
PRO
141
1
Y
1
A
A
NH1
OE1
ARG
GLU
103
107
1.94
1
A
A
OG
OE2
SER
1C4
427
501
1.95
1
A
A
O
NH2
ALA
ARG
285
371
2.04
1
A
A
N
O
HIS
HOH
79
610
2.16
1
A
A
OH
O
TYR
HOH
64
627
2.19
1
A
LEU
35
-92.14
30.56
1
A
ALA
63
-144.45
-18.05
1
A
LEU
67
-30.32
-70.09
1
A
ALA
71
-62.46
-88.17
1
A
ALA
72
-29.59
-57.27
1
A
ARG
82
38.34
45.38
1
A
GLU
145
80.87
-95.87
1
A
THR
206
-112.13
-167.27
1
A
ASP
215
-75.89
25.21
1
A
ALA
219
-65.31
99.87
1
A
ALA
285
-44.67
152.17
1
A
ASN
323
-106.14
55.29
1
A
HIS
324
-166.80
13.74
1
A
ASP
365
77.01
-10.40
1
A
THR
395
-142.23
18.90
1
A
ARG
402
-143.21
27.53
1
A
ASP
410
-55.75
-4.73
1
A
ASN
423
-9.88
-64.39
1
A
SER
427
-42.49
157.47
118.410
49.4288
22.600
0.8429
0.0000
-0.0000
0.8429
0.0000
-1.6859
BULK SOLVENT MODEL USED
0.2713
0.1893
0.1977
2.7500
24.0420
1331
13151
13149
10.1200
99.9300
1.000
1.000
0.7922
0.7900
RANDOM
1
RESTRAINED
THROUGHOUT
1.350
0
FOURIER SYNTHESIS
27.6700
0.9500
1.2000
3B8G
ML
FLAT BULK SOLVENT MODEL
34.4500
0.3330
2.7500
24.0420
34
3327
66
0
3227
0.008
3347
1.188
4533
0.074
508
0.004
592
18.434
1226
0.3743
0.2876
2.8484
134
1170
1304
10
100.0000
0.3633
0.2694
2.9623
134
1179
1313
10
100.0000
0.3356
0.2319
3.0968
133
1169
1302
10
100.0000
0.3448
0.2201
3.2597
127
1170
1297
10
100.0000
0.2907
0.2165
3.4634
129
1165
1294
10
100.0000
0.2883
0.1953
3.7299
132
1186
1318
10
100.0000
0.2679
0.1765
4.1036
128
1189
1317
10
100.0000
0.2220
0.1436
4.6936
138
1180
1318
10
100.0000
0.2252
0.1723
5.8989
131
1183
1314
10
100.0000
0.2451
0.1689
24.0431
145
1227
1372
10
99.0000
53.39
2.75
50
4I49
13177
13151
0
0
0.087
1
12.9
9.8
99.8
0.522
2.75
2.80
1.55
647
1
9.7
64.7
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.1_743
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
StructureStudio
Structure of ngNAGS bound with bisubstrate analog CoA-NAG
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
6
A
SER
26
HELX_P
A
ARG
22
A
ARG
42
1
1
17
A
GLY
32
A
GLY
52
HELX_P
A
GLU
36
A
GLU
56
5
2
5
A
GLY
37
A
GLY
57
HELX_P
A
LEU
53
A
LEU
73
1
3
17
A
ALA
63
A
ALA
83
HELX_P
A
GLN
74
A
GLN
94
1
4
12
A
ASP
88
A
ASP
108
HELX_P
A
GLY
112
A
GLY
132
1
5
25
A
ASP
154
A
ASP
174
HELX_P
A
ALA
164
A
ALA
184
1
6
11
A
ASP
185
A
ASP
205
HELX_P
A
LEU
197
A
LEU
217
1
7
13
A
ALA
224
A
ALA
244
HELX_P
A
ALA
231
A
ALA
251
1
8
8
A
ALA
235
A
ALA
255
HELX_P
A
GLY
252
A
GLY
272
1
9
18
A
GLY
265
A
GLY
285
HELX_P
A
THR
273
A
THR
293
1
10
9
A
HIS
293
A
HIS
313
HELX_P
A
GLY
295
A
GLY
315
5
11
3
A
ASP
296
A
ASP
316
HELX_P
A
GLY
311
A
GLY
331
1
12
16
A
SER
317
A
SER
337
HELX_P
A
ASN
323
A
ASN
343
1
13
7
A
HIS
324
A
HIS
344
HELX_P
A
SER
326
A
SER
346
5
14
3
A
GLY
367
A
GLY
387
HELX_P
A
ILE
383
A
ILE
403
1
15
17
A
THR
395
A
THR
415
HELX_P
A
GLU
401
A
GLU
421
1
16
7
A
SER
408
A
SER
428
HELX_P
A
LEU
412
A
LEU
432
5
17
5
A
PRO
413
A
PRO
433
HELX_P
A
GLY
424
A
GLY
444
1
18
12
TRANSFERASE
Protein-bisubstrate analog complex, Synthase, Transferase
D1ED56_NEIGO
UNP
1
1
D1ED56
MNAPDSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTLNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHY
CRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
QLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRR
LISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREY
LENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFA
ERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR
1
436
4I49
1
436
D1ED56
A
1
21
456
1
initiating methionine
MET
-19
4I49
A
D1ED56
UNP
1
1
expression tag
GLY
-18
4I49
A
D1ED56
UNP
2
1
expression tag
SER
-17
4I49
A
D1ED56
UNP
3
1
expression tag
SER
-16
4I49
A
D1ED56
UNP
4
1
expression tag
HIS
-15
4I49
A
D1ED56
UNP
5
1
expression tag
HIS
-14
4I49
A
D1ED56
UNP
6
1
expression tag
HIS
-13
4I49
A
D1ED56
UNP
7
1
expression tag
HIS
-12
4I49
A
D1ED56
UNP
8
1
expression tag
HIS
-11
4I49
A
D1ED56
UNP
9
1
expression tag
HIS
-10
4I49
A
D1ED56
UNP
10
1
expression tag
SER
-9
4I49
A
D1ED56
UNP
11
1
expression tag
SER
-8
4I49
A
D1ED56
UNP
12
1
expression tag
GLY
-7
4I49
A
D1ED56
UNP
13
1
expression tag
LEU
-6
4I49
A
D1ED56
UNP
14
1
expression tag
VAL
-5
4I49
A
D1ED56
UNP
15
1
expression tag
PRO
-4
4I49
A
D1ED56
UNP
16
1
expression tag
ARG
-3
4I49
A
D1ED56
UNP
17
1
expression tag
GLY
-2
4I49
A
D1ED56
UNP
18
1
expression tag
SER
-1
4I49
A
D1ED56
UNP
19
1
expression tag
HIS
0
4I49
A
D1ED56
UNP
20
8
2
5
2
7
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
LEU
125
A
LEU
145
A
VAL
126
A
VAL
146
A
ILE
167
A
ILE
187
A
MET
170
A
MET
190
A
ARG
56
A
ARG
76
A
HIS
61
A
HIS
81
A
THR
25
A
THR
45
A
ILE
30
A
ILE
50
A
LYS
201
A
LYS
221
A
THR
206
A
THR
226
A
ARG
255
A
ARG
275
A
ASN
260
A
ASN
280
A
THR
279
A
THR
299
A
ALA
282
A
ALA
302
A
THR
221
A
THR
241
A
SER
223
A
SER
243
A
TYR
80
A
TYR
100
A
CYS
81
A
CYS
101
A
LEU
84
A
LEU
104
A
ARG
85
A
ARG
105
A
LEU
131
A
LEU
151
A
PRO
135
A
PRO
155
A
ALA
147
A
ALA
167
A
THR
153
A
THR
173
A
THR
181
A
THR
201
A
LEU
184
A
LEU
204
A
LEU
173
A
LEU
193
A
HIS
175
A
HIS
195
A
LEU
131
A
LEU
151
A
PRO
135
A
PRO
155
A
VAL
138
A
VAL
158
A
ILE
139
A
ILE
159
A
THR
142
A
THR
162
A
ASP
143
A
ASP
163
A
SER
288
A
SER
308
A
GLN
291
A
GLN
311
A
PHE
328
A
PHE
348
A
HIS
333
A
HIS
353
A
ASN
336
A
ASN
356
A
THR
345
A
THR
365
A
CYS
351
A
CYS
371
A
VAL
359
A
VAL
379
A
ARG
387
A
ARG
407
A
SER
392
A
SER
412
A
HIS
428
A
HIS
448
A
ARG
433
A
ARG
453
A
GLN
405
A
GLN
425
A
ALA
407
A
ALA
427
BINDING SITE FOR RESIDUE 1C4 A 501
A
1C4
501
Software
30
BINDING SITE FOR RESIDUE SO4 A 502
A
SO4
502
Software
7
A
ARG
134
A
ARG
154
30
3_555
A
ARG
151
A
ARG
171
30
3_555
A
LYS
152
A
LYS
172
30
3_555
A
TYR
177
A
TYR
197
30
3_555
A
ILE
312
A
ILE
332
30
1_555
A
LEU
313
A
LEU
333
30
1_555
A
LEU
314
A
LEU
334
30
1_555
A
ARG
316
A
ARG
336
30
1_555
A
ALA
355
A
ALA
375
30
1_555
A
CYS
356
A
CYS
376
30
1_555
A
LEU
357
A
LEU
377
30
1_555
A
ALA
358
A
ALA
378
30
1_555
A
VAL
359
A
VAL
379
30
1_555
A
GLN
364
A
GLN
384
30
1_555
A
ASP
365
A
ASP
385
30
1_555
A
GLY
367
A
GLY
387
30
1_555
A
TYR
368
A
TYR
388
30
1_555
A
GLY
369
A
GLY
389
30
1_555
A
GLU
370
A
GLU
390
30
1_555
A
LEU
391
A
LEU
411
30
1_555
A
SER
392
A
SER
412
30
1_555
A
ASN
394
A
ASN
414
30
1_555
A
THR
395
A
THR
415
30
1_555
A
TRP
398
A
TRP
418
30
1_555
A
PHE
399
A
PHE
419
30
1_555
A
ARG
402
A
ARG
422
30
1_555
A
ARG
416
A
ARG
436
30
1_555
A
ARG
425
A
ARG
445
30
1_555
A
SER
427
A
SER
447
30
1_555
A
HOH
602
D
HOH
30
1_555
A
ARG
12
A
ARG
32
7
4_554
A
LEU
43
A
LEU
63
7
1_555
A
ASP
46
A
ASP
66
7
1_555
A
GLY
261
A
GLY
281
7
1_555
A
GLY
265
A
GLY
285
7
1_555
A
SER
266
A
SER
286
7
1_555
A
LEU
267
A
LEU
287
7
1_555
149
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