0.010817 0.000000 0.000000 0.000000 0.009169 0.000000 0.000000 0.000000 0.013654 0.00000 0.00000 0.00000 Juang, Y.C. Sicheri, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 92.444 109.069 73.238 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing US Science SCIEAS 0038 0036-8075 339 590 595 10.1126/science.1230161 23287719 A strategy for modulation of enzymes in the ubiquitin system. 2013 10.2210/pdb4i6l/pdb pdb_00004i6l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 PIXEL 2012-07-03 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 24-ID-E APS 0.9795 SYNCHROTRON APS BEAMLINE 24-ID-E 26572.781 Ubiquitin thioesterase OTUB1 3.4.19.12 UNP residues 45-271 C91S 1 man polymer 8760.101 Ubiquitin UNP residues 77-150 1 man polymer 18.015 water 84 nat water Deubiquitinating enzyme OTUB1, OTU domain-containing ubiquitin aldehyde-binding protein 1, Otubain-1, hOTU1, Ubiquitin-specific-processing protease OTUB1 Ubiquitin no no GSNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSK EDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK GSNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSK EDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK A polypeptide(L) no no GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIHKESFLYLVLRLR GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIHKESFLYLVLRLR B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample OTUB1, OTB1, OTU1, HSPC263 9606 Homo sapiens 562 Escherichia coli human sample UBC 9606 Homo sapiens 562 Escherichia coli 1 2.61 52.92 VAPOR DIFFUSION, SITTING DROP 6.5 0.2 M ammonium sulfate, 0.1 M MES, pH 6.5, and 20% (w/v) PEG8000, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Database references Data collection Database references Refinement description 1 0 2013-01-16 1 1 2013-02-06 1 2 2013-02-20 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2012-11-29 REL REL HOH water 2ZFY 2zfy, 1ubq PDB experimental model 1UBQ 2zfy, 1ubq PDB experimental model HOH 2 3 HOH HOH 301 A HOH 4 3 HOH HOH 302 A HOH 7 3 HOH HOH 303 A HOH 8 3 HOH HOH 304 A HOH 9 3 HOH HOH 305 A HOH 11 3 HOH HOH 306 A HOH 13 3 HOH HOH 307 A HOH 14 3 HOH HOH 308 A HOH 15 3 HOH HOH 309 A HOH 16 3 HOH HOH 310 A HOH 18 3 HOH HOH 311 A HOH 19 3 HOH HOH 312 A HOH 20 3 HOH HOH 313 A HOH 22 3 HOH HOH 314 A HOH 24 3 HOH HOH 315 A HOH 25 3 HOH HOH 316 A HOH 27 3 HOH HOH 317 A HOH 28 3 HOH HOH 318 A HOH 29 3 HOH HOH 319 A HOH 30 3 HOH HOH 320 A HOH 32 3 HOH HOH 321 A HOH 33 3 HOH HOH 322 A HOH 37 3 HOH HOH 323 A HOH 38 3 HOH HOH 324 A HOH 39 3 HOH HOH 325 A HOH 41 3 HOH HOH 326 A HOH 43 3 HOH HOH 327 A HOH 44 3 HOH HOH 328 A HOH 45 3 HOH HOH 329 A HOH 46 3 HOH HOH 330 A HOH 48 3 HOH HOH 331 A HOH 49 3 HOH HOH 332 A HOH 50 3 HOH HOH 333 A HOH 53 3 HOH HOH 334 A HOH 55 3 HOH HOH 335 A HOH 56 3 HOH HOH 336 A HOH 58 3 HOH HOH 337 A HOH 60 3 HOH HOH 338 A HOH 61 3 HOH HOH 339 A HOH 63 3 HOH HOH 340 A HOH 64 3 HOH HOH 341 A HOH 65 3 HOH HOH 342 A HOH 66 3 HOH HOH 343 A HOH 67 3 HOH HOH 344 A HOH 68 3 HOH HOH 345 A HOH 70 3 HOH HOH 346 A HOH 71 3 HOH HOH 347 A HOH 72 3 HOH HOH 348 A HOH 73 3 HOH HOH 349 A HOH 74 3 HOH HOH 350 A HOH 76 3 HOH HOH 351 A HOH 77 3 HOH HOH 352 A HOH 78 3 HOH HOH 353 A HOH 79 3 HOH HOH 354 A HOH 80 3 HOH HOH 355 A HOH 81 3 HOH HOH 356 A HOH 83 3 HOH HOH 357 A HOH 84 3 HOH HOH 358 A HOH 1 3 HOH HOH 101 B HOH 3 3 HOH HOH 102 B HOH 5 3 HOH HOH 103 B HOH 6 3 HOH HOH 104 B HOH 10 3 HOH HOH 105 B HOH 12 3 HOH HOH 106 B HOH 17 3 HOH HOH 107 B HOH 21 3 HOH HOH 108 B HOH 23 3 HOH HOH 109 B HOH 26 3 HOH HOH 110 B HOH 31 3 HOH HOH 111 B HOH 34 3 HOH HOH 112 B HOH 35 3 HOH HOH 113 B HOH 36 3 HOH HOH 114 B HOH 40 3 HOH HOH 115 B HOH 42 3 HOH HOH 116 B HOH 47 3 HOH HOH 117 B HOH 51 3 HOH HOH 118 B HOH 52 3 HOH HOH 119 B HOH 54 3 HOH HOH 120 B HOH 57 3 HOH HOH 121 B HOH 59 3 HOH HOH 122 B HOH 62 3 HOH HOH 123 B HOH 69 3 HOH HOH 124 B HOH 75 3 HOH HOH 125 B HOH 82 3 HOH HOH 126 B GLY 43 n 1 GLY 43 A SER 44 n 2 SER 44 A ASN 45 n 3 ASN 45 A PRO 46 n 4 PRO 46 A LEU 47 n 5 LEU 47 A VAL 48 n 6 VAL 48 A SER 49 n 7 SER 49 A GLU 50 n 8 GLU 50 A ARG 51 n 9 ARG 51 A LEU 52 n 10 LEU 52 A GLU 53 n 11 GLU 53 A LEU 54 n 12 LEU 54 A SER 55 n 13 SER 55 A VAL 56 n 14 VAL 56 A LEU 57 n 15 LEU 57 A TYR 58 n 16 TYR 58 A LYS 59 n 17 LYS 59 A GLU 60 n 18 GLU 60 A TYR 61 n 19 TYR 61 A n 20 62 A n 21 63 A n 22 64 A ASP 65 n 23 ASP 65 A ASN 66 n 24 ASN 66 A ILE 67 n 25 ILE 67 A TYR 68 n 26 TYR 68 A GLN 69 n 27 GLN 69 A GLN 70 n 28 GLN 70 A LYS 71 n 29 LYS 71 A ILE 72 n 30 ILE 72 A LYS 73 n 31 LYS 73 A ASP 74 n 32 ASP 74 A LEU 75 n 33 LEU 75 A HIS 76 n 34 HIS 76 A LYS 77 n 35 LYS 77 A LYS 78 n 36 LYS 78 A TYR 79 n 37 TYR 79 A SER 80 n 38 SER 80 A TYR 81 n 39 TYR 81 A ILE 82 n 40 ILE 82 A ARG 83 n 41 ARG 83 A LYS 84 n 42 LYS 84 A THR 85 n 43 THR 85 A ARG 86 n 44 ARG 86 A PRO 87 n 45 PRO 87 A ASP 88 n 46 ASP 88 A GLY 89 n 47 GLY 89 A ASN 90 n 48 ASN 90 A SER 91 n 49 SER 91 A PHE 92 n 50 PHE 92 A TYR 93 n 51 TYR 93 A ARG 94 n 52 ARG 94 A ALA 95 n 53 ALA 95 A PHE 96 n 54 PHE 96 A GLY 97 n 55 GLY 97 A PHE 98 n 56 PHE 98 A SER 99 n 57 SER 99 A HIS 100 n 58 HIS 100 A LEU 101 n 59 LEU 101 A GLU 102 n 60 GLU 102 A ALA 103 n 61 ALA 103 A LEU 104 n 62 LEU 104 A LEU 105 n 63 LEU 105 A ASP 106 n 64 ASP 106 A ASP 107 n 65 ASP 107 A SER 108 n 66 SER 108 A LYS 109 n 67 LYS 109 A GLU 110 n 68 GLU 110 A LEU 111 n 69 LEU 111 A GLN 112 n 70 GLN 112 A ARG 113 n 71 ARG 113 A PHE 114 n 72 PHE 114 A LYS 115 n 73 LYS 115 A ALA 116 n 74 ALA 116 A VAL 117 n 75 VAL 117 A SER 118 n 76 SER 118 A ALA 119 n 77 ALA 119 A LYS 120 n 78 LYS 120 A SER 121 n 79 SER 121 A LYS 122 n 80 LYS 122 A GLU 123 n 81 GLU 123 A ASP 124 n 82 ASP 124 A LEU 125 n 83 LEU 125 A VAL 126 n 84 VAL 126 A SER 127 n 85 SER 127 A GLN 128 n 86 GLN 128 A GLY 129 n 87 GLY 129 A PHE 130 n 88 PHE 130 A THR 131 n 89 THR 131 A GLU 132 n 90 GLU 132 A PHE 133 n 91 PHE 133 A THR 134 n 92 THR 134 A ILE 135 n 93 ILE 135 A GLU 136 n 94 GLU 136 A ASP 137 n 95 ASP 137 A PHE 138 n 96 PHE 138 A HIS 139 n 97 HIS 139 A ASN 140 n 98 ASN 140 A THR 141 n 99 THR 141 A PHE 142 n 100 PHE 142 A MET 143 n 101 MET 143 A ASP 144 n 102 ASP 144 A LEU 145 n 103 LEU 145 A ILE 146 n 104 ILE 146 A GLU 147 n 105 GLU 147 A GLN 148 n 106 GLN 148 A VAL 149 n 107 VAL 149 A GLU 150 n 108 GLU 150 A LYS 151 n 109 LYS 151 A GLN 152 n 110 GLN 152 A THR 153 n 111 THR 153 A SER 154 n 112 SER 154 A VAL 155 n 113 VAL 155 A ALA 156 n 114 ALA 156 A ASP 157 n 115 ASP 157 A LEU 158 n 116 LEU 158 A LEU 159 n 117 LEU 159 A ALA 160 n 118 ALA 160 A SER 161 n 119 SER 161 A PHE 162 n 120 PHE 162 A ASN 163 n 121 ASN 163 A ASP 164 n 122 ASP 164 A GLN 165 n 123 GLN 165 A SER 166 n 124 SER 166 A THR 167 n 125 THR 167 A SER 168 n 126 SER 168 A ASP 169 n 127 ASP 169 A TYR 170 n 128 TYR 170 A LEU 171 n 129 LEU 171 A VAL 172 n 130 VAL 172 A VAL 173 n 131 VAL 173 A TYR 174 n 132 TYR 174 A LEU 175 n 133 LEU 175 A ARG 176 n 134 ARG 176 A LEU 177 n 135 LEU 177 A LEU 178 n 136 LEU 178 A THR 179 n 137 THR 179 A SER 180 n 138 SER 180 A GLY 181 n 139 GLY 181 A TYR 182 n 140 TYR 182 A LEU 183 n 141 LEU 183 A GLN 184 n 142 GLN 184 A ARG 185 n 143 ARG 185 A GLU 186 n 144 GLU 186 A SER 187 n 145 SER 187 A LYS 188 n 146 LYS 188 A PHE 189 n 147 PHE 189 A PHE 190 n 148 PHE 190 A GLU 191 n 149 GLU 191 A HIS 192 n 150 HIS 192 A PHE 193 n 151 PHE 193 A ILE 194 n 152 ILE 194 A GLU 195 n 153 GLU 195 A GLY 196 n 154 GLY 196 A GLY 197 n 155 GLY 197 A ARG 198 n 156 ARG 198 A THR 199 n 157 THR 199 A VAL 200 n 158 VAL 200 A LYS 201 n 159 LYS 201 A GLU 202 n 160 GLU 202 A PHE 203 n 161 PHE 203 A CYS 204 n 162 CYS 204 A GLN 205 n 163 GLN 205 A GLN 206 n 164 GLN 206 A GLU 207 n 165 GLU 207 A VAL 208 n 166 VAL 208 A GLU 209 n 167 GLU 209 A PRO 210 n 168 PRO 210 A MET 211 n 169 MET 211 A CYS 212 n 170 CYS 212 A LYS 213 n 171 LYS 213 A GLU 214 n 172 GLU 214 A SER 215 n 173 SER 215 A ASP 216 n 174 ASP 216 A HIS 217 n 175 HIS 217 A ILE 218 n 176 ILE 218 A HIS 219 n 177 HIS 219 A ILE 220 n 178 ILE 220 A ILE 221 n 179 ILE 221 A ALA 222 n 180 ALA 222 A LEU 223 n 181 LEU 223 A ALA 224 n 182 ALA 224 A GLN 225 n 183 GLN 225 A ALA 226 n 184 ALA 226 A LEU 227 n 185 LEU 227 A SER 228 n 186 SER 228 A VAL 229 n 187 VAL 229 A SER 230 n 188 SER 230 A ILE 231 n 189 ILE 231 A GLN 232 n 190 GLN 232 A VAL 233 n 191 VAL 233 A GLU 234 n 192 GLU 234 A TYR 235 n 193 TYR 235 A MET 236 n 194 MET 236 A n 195 237 A n 196 238 A n 197 239 A n 198 240 A n 199 241 A n 200 242 A n 201 243 A n 202 244 A n 203 245 A PRO 246 n 204 PRO 246 A HIS 247 n 205 HIS 247 A ILE 248 n 206 ILE 248 A PHE 249 n 207 PHE 249 A PRO 250 n 208 PRO 250 A GLU 251 n 209 GLU 251 A GLY 252 n 210 GLY 252 A SER 253 n 211 SER 253 A GLU 254 n 212 GLU 254 A PRO 255 n 213 PRO 255 A LYS 256 n 214 LYS 256 A VAL 257 n 215 VAL 257 A TYR 258 n 216 TYR 258 A LEU 259 n 217 LEU 259 A LEU 260 n 218 LEU 260 A TYR 261 n 219 TYR 261 A ARG 262 n 220 ARG 262 A PRO 263 n 221 PRO 263 A GLY 264 n 222 GLY 264 A HIS 265 n 223 HIS 265 A TYR 266 n 224 TYR 266 A ASP 267 n 225 ASP 267 A ILE 268 n 226 ILE 268 A LEU 269 n 227 LEU 269 A TYR 270 n 228 TYR 270 A LYS 271 n 229 LYS 271 A GLY -1 n 1 GLY -1 B SER 0 n 2 SER 0 B MET 1 n 3 MET 1 B GLN 2 n 4 GLN 2 B ILE 3 n 5 ILE 3 B PHE 4 n 6 PHE 4 B VAL 5 n 7 VAL 5 B LYS 6 n 8 LYS 6 B THR 7 n 9 THR 7 B LEU 8 n 10 LEU 8 B THR 9 n 11 THR 9 B GLY 10 n 12 GLY 10 B LYS 11 n 13 LYS 11 B THR 12 n 14 THR 12 B ILE 13 n 15 ILE 13 B THR 14 n 16 THR 14 B LEU 15 n 17 LEU 15 B GLU 16 n 18 GLU 16 B VAL 17 n 19 VAL 17 B GLU 18 n 20 GLU 18 B PRO 19 n 21 PRO 19 B SER 20 n 22 SER 20 B ASP 21 n 23 ASP 21 B THR 22 n 24 THR 22 B ILE 23 n 25 ILE 23 B GLU 24 n 26 GLU 24 B ASN 25 n 27 ASN 25 B VAL 26 n 28 VAL 26 B LYS 27 n 29 LYS 27 B ALA 28 n 30 ALA 28 B LYS 29 n 31 LYS 29 B ILE 30 n 32 ILE 30 B GLN 31 n 33 GLN 31 B ASP 32 n 34 ASP 32 B LYS 33 n 35 LYS 33 B GLU 34 n 36 GLU 34 B GLY 35 n 37 GLY 35 B ILE 36 n 38 ILE 36 B PRO 37 n 39 PRO 37 B PRO 38 n 40 PRO 38 B ASP 39 n 41 ASP 39 B GLN 40 n 42 GLN 40 B GLN 41 n 43 GLN 41 B LYS 42 n 44 LYS 42 B LEU 43 n 45 LEU 43 B LEU 44 n 46 LEU 44 B PHE 45 n 47 PHE 45 B ALA 46 n 48 ALA 46 B ARG 47 n 49 ARG 47 B LYS 48 n 50 LYS 48 B GLN 49 n 51 GLN 49 B LEU 50 n 52 LEU 50 B GLU 51 n 53 GLU 51 B ASP 52 n 54 ASP 52 B GLY 53 n 55 GLY 53 B ARG 54 n 56 ARG 54 B THR 55 n 57 THR 55 B LEU 56 n 58 LEU 56 B SER 57 n 59 SER 57 B ASP 58 n 60 ASP 58 B TYR 59 n 61 TYR 59 B ASN 60 n 62 ASN 60 B ILE 61 n 63 ILE 61 B HIS 62 n 64 HIS 62 B LYS 63 n 65 LYS 63 B GLU 64 n 66 GLU 64 B SER 65 n 67 SER 65 B PHE 66 n 68 PHE 66 B LEU 67 n 69 LEU 67 B TYR 68 n 70 TYR 68 B LEU 69 n 71 LEU 69 B VAL 70 n 72 VAL 70 B LEU 71 n 73 LEU 71 B ARG 72 n 74 ARG 72 B LEU 73 n 75 LEU 73 B n 76 74 B 1.4048 0.0217 -0.7367 0.4537 0.7855 1.7878 -0.2528 0.3724 0.7957 -0.4403 -0.0667 0.2119 -1.6882 -0.2540 0.5852 1.0223 0.1146 -0.3390 0.4317 0.0083 0.5188 refined 2.3726 -16.8023 -3.8112 X-RAY DIFFRACTION 1.4382 0.2522 0.3223 2.0351 1.5403 2.6274 -0.0813 0.0198 0.0145 0.0002 -0.1274 0.2503 -0.0620 -0.0729 0.1393 0.0342 -0.0293 -0.0288 0.0440 -0.0115 0.1010 refined 11.7043 -36.5435 9.2864 X-RAY DIFFRACTION 1.9826 1.0877 0.0773 3.0364 1.5420 3.0661 -0.0668 0.0634 0.0007 -0.3599 -0.0609 0.1775 -0.6619 0.1784 0.1046 0.1834 -0.0571 -0.0404 0.0973 -0.0084 0.1342 refined 16.2813 -22.7732 12.8918 X-RAY DIFFRACTION 4.3258 5.3066 4.1512 8.6330 5.9585 4.3369 -0.4134 0.6132 -0.3085 -0.6515 0.5048 -0.6784 -0.1191 0.1180 -0.2120 0.4132 -0.0269 0.1079 0.1719 -0.0449 0.2507 refined 34.2242 -7.2748 16.7792 X-RAY DIFFRACTION 0.9809 -0.4821 -0.4520 1.3304 -1.0788 1.7562 -0.4120 0.3207 -0.4330 -1.0004 0.5711 -0.5149 0.0692 0.0724 0.1605 0.4294 -0.1335 0.1549 0.2192 -0.0717 0.2674 refined 30.9758 -10.4917 12.8027 X-RAY DIFFRACTION 4.7367 -2.1923 0.1249 1.6461 0.7479 9.4759 -0.1271 0.1466 0.0023 -0.7812 0.2260 -0.8336 -0.4394 -0.0839 -0.0634 0.3047 -0.0231 -0.0087 0.1112 -0.0608 0.3119 refined 32.1220 3.6116 21.0953 X-RAY DIFFRACTION 2.2849 -0.1950 -0.0603 4.9469 2.9536 1.7649 0.0934 0.5634 0.1559 -1.2731 -0.0723 -0.0065 -0.7417 0.0136 0.0948 0.3680 -0.0314 -0.0128 0.1721 0.0150 0.1144 refined 25.8169 -1.5882 12.6243 X-RAY DIFFRACTION 1.2334 -1.4438 0.0656 3.4979 0.4762 5.4231 -0.2430 0.2490 0.0128 -0.9403 0.0861 0.8034 -0.0210 -1.1208 0.1274 0.3092 -0.1115 -0.1489 0.3347 -0.0308 0.3661 refined 19.3449 -6.1251 14.5033 X-RAY DIFFRACTION 4.5548 3.4189 -3.7421 5.4037 -6.0066 7.0214 0.2431 -0.0708 0.4994 0.1462 0.2592 0.8586 -0.0363 -0.8247 -0.3444 0.2103 -0.0535 -0.0209 0.2572 -0.0461 0.2118 refined 23.8809 -4.7616 26.3390 X-RAY DIFFRACTION 3.9820 0.3138 0.7904 2.1089 1.0013 4.3759 -0.0642 -0.4729 -0.1779 -0.1605 0.0153 -0.7548 -0.2835 0.4958 -0.1142 0.1784 -0.1074 -0.0128 0.2387 0.0604 0.2741 refined 33.7687 -4.2419 26.4265 X-RAY DIFFRACTION 3.1327 1.8016 1.7768 7.9952 0.8256 8.5766 -0.1972 0.0416 0.2703 -0.6865 0.1937 0.2096 -0.0924 -0.5478 0.1309 0.2519 -0.1141 0.0129 0.1929 0.0080 0.1735 refined 22.4677 -11.5498 17.5928 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resseq 43:76) X-RAY DIFFRACTION 2 chain 'A' and (resseq 77:185) X-RAY DIFFRACTION 3 chain 'A' and (resseq 186:271) X-RAY DIFFRACTION 4 chain 'B' and (resseq -1:7) X-RAY DIFFRACTION 5 chain 'B' and (resseq 8:17) X-RAY DIFFRACTION 6 chain 'B' and (resseq 18:22) X-RAY DIFFRACTION 7 chain 'B' and (resseq 23:34) X-RAY DIFFRACTION 8 chain 'B' and (resseq 35:44) X-RAY DIFFRACTION 9 chain 'B' and (resseq 45:56) X-RAY DIFFRACTION 10 chain 'B' and (resseq 57:65) X-RAY DIFFRACTION 11 chain 'B' and (resseq 66:73) author_and_software_defined_assembly PISA 2 dimeric 1610 -8 13660 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 52 A N LEU 10 A O ILE 82 A O ILE 40 A N ARG 83 A N ARG 41 A O ILE 268 A O ILE 226 A O LEU 269 A O LEU 227 A N TYR 258 A N TYR 216 A O TYR 261 A O TYR 219 A N GLU 234 A N GLU 192 A N ILE 231 A N ILE 189 A O PHE 249 A O PHE 207 B O ILE 13 B O ILE 15 B N VAL 5 B N VAL 7 B N LYS 6 B N LYS 8 B O LEU 69 B O LEU 71 B O TYR 68 B O TYR 70 B N LEU 44 B N LEU 46 B N PHE 45 B N PHE 47 B O LYS 48 B O LYS 50 1 A ALA 62 A ALA 20 1 Y 1 A GLU 63 A GLU 21 1 Y 1 A ASP 64 A ASP 22 1 Y 1 A ASP 237 A ASP 195 1 Y 1 A ARG 238 A ARG 196 1 Y 1 A GLY 239 A GLY 197 1 Y 1 A GLU 240 A GLU 198 1 Y 1 A GLY 241 A GLY 199 1 Y 1 A GLY 242 A GLY 200 1 Y 1 A THR 243 A THR 201 1 Y 1 A THR 244 A THR 202 1 Y 1 A ASN 245 A ASN 203 1 Y 1 B ARG 74 B ARG 76 1 Y 1 A A O O TYR HOH 270 334 2.07 1 A LYS 59 -79.03 44.51 1 A GLU 60 -148.80 -12.60 1 A GLU 186 -102.77 43.24 1 A CYS 212 75.02 -12.66 1 A ASP 216 -126.75 -164.09 1 A PRO 263 -39.31 110.70 1 B ASP 32 -72.53 30.18 1 B LYS 33 -148.43 -21.70 2.9516 0.0000 0.0000 -2.2483 -0.0000 -0.7033 0.2663 0.2197 0.2218 2.488 46.222 580 12681 12212 4.75 91.52 0.33 RANDOM 1 1.37 MOLECULAR REPLACEMENT 25.12 0.98 1.20 2zfy, 1ubq MLHL FLAT BULK SOLVENT MODEL 16.123 0.303 2.488 46.222 84 2479 0 0 2395 0.003 2444 0.715 3288 13.329 925 0.053 361 0.003 420 0.3026 0.2667 2.7381 118 2133 69.00 0.3232 0.2588 3.1342 159 3065 98.00 0.2531 0.2187 3.9484 162 3148 100.00 0.2401 0.1943 46.2300 141 3286 99.00 2.5 50 4I6L 13269 12681 2.4 1 2.59 2.69 1 data collection HKL-2000 phasing PHASER refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling HKL-2000 Crystal structure of OTUB1 in complex with ubiquitin variant 1 N N 2 N N 3 N N 3 N N A SER 55 A SER 13 HELX_P A TYR 61 A TYR 19 5 1 7 A ASN 66 A ASN 24 HELX_P A LYS 77 A LYS 35 1 2 12 A ASN 90 A ASN 48 HELX_P A LEU 104 A LEU 62 1 3 15 A ASP 107 A ASP 65 HELX_P A GLN 128 A GLN 86 1 4 22 A THR 131 A THR 89 HELX_P A LYS 151 A LYS 109 1 5 21 A SER 154 A SER 112 HELX_P A PHE 162 A PHE 120 1 6 9 A ASP 164 A ASP 122 HELX_P A GLU 186 A GLU 144 1 7 23 A GLU 186 A GLU 144 HELX_P A GLU 191 A GLU 149 1 8 6 A HIS 192 A HIS 150 HELX_P A ILE 194 A ILE 152 5 9 3 A THR 199 A THR 157 HELX_P A VAL 208 A VAL 166 1 10 10 A ASP 216 A ASP 174 HELX_P A LEU 227 A LEU 185 1 11 12 B THR 22 B THR 24 HELX_P B GLY 35 B GLY 37 1 12 14 B PRO 37 B PRO 39 HELX_P B ASP 39 B ASP 41 5 13 3 B THR 55 B THR 57 HELX_P B ASN 60 B ASN 62 5 14 6 disulf 2.030 A CYS 212 A SG CYS 170 1_555 A CYS 212 A SG CYS 170 3_555 HYDROLASE deubiquitinase, HYDROLASE A PHE 249 A PHE 207 1 A PRO 250 A PRO 208 0.45 OTUB1_HUMAN UNP 1 45 Q96FW1 NPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKED LVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFC QQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK UBC_HUMAN UNP 2 77 P0CG48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 45 271 4I6L 45 271 Q96FW1 A 1 3 229 77 150 4I6L 1 74 P0CG48 B 2 3 76 1 expression tag GLY 43 4I6L A Q96FW1 UNP 1 1 expression tag SER 44 4I6L A Q96FW1 UNP 2 1 CYS engineered mutation SER 91 4I6L A Q96FW1 UNP 91 49 2 expression tag GLY -1 4I6L B P0CG48 UNP 1 2 expression tag SER 0 4I6L B P0CG48 UNP 2 2 ARG variant LYS 42 4I6L B P0CG48 UNP 118 44 2 ILE variant LEU 44 4I6L B P0CG48 UNP 120 46 2 GLY variant ARG 47 4I6L B P0CG48 UNP 123 49 2 GLN variant HIS 62 4I6L B P0CG48 UNP 138 64 2 THR variant PHE 66 4I6L B P0CG48 UNP 142 68 2 HIS variant TYR 68 4I6L B P0CG48 UNP 144 70 6 5 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A VAL 48 A VAL 6 A GLU 53 A GLU 11 A TYR 81 A TYR 39 A THR 85 A THR 43 A HIS 265 A HIS 223 A TYR 270 A TYR 228 A VAL 257 A VAL 215 A ARG 262 A ARG 220 A ILE 231 A ILE 189 A TYR 235 A TYR 193 A HIS 247 A HIS 205 A PHE 249 A PHE 207 B THR 12 B THR 14 B VAL 17 B VAL 19 B MET 1 B MET 3 B THR 7 B THR 9 B PHE 66 B PHE 68 B LEU 71 B LEU 73 B GLN 41 B GLN 43 B PHE 45 B PHE 47 B LYS 48 B LYS 50 B GLN 49 B GLN 51 20 C 2 2 21