0.028769 0.003024 0.010039 -0.000000 0.028911 0.012410 0.000000 -0.000000 0.026991 0.000000 0.000000 0.000000 Martin, R.N.A. McGeehan, J.E. Kneale, G.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 110.470 105.600 96.000 34.760 34.780 41.860 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N S N 288 N O N 289 N O N 290 N O N 291 N O N 292 N N N 293 S C N 294 N C N 295 N O N 296 R C N 297 N O N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C N 320 N O N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N C N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing US Plos One 1932-6203 9 e98365 e98365 10.1371/journal.pone.0098365 24887147 Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. 2014 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 65 900 905 10.1107/S0907444909020514 19690367 Structure of the restriction-modification controller protein C.Esp1396I. 2009 UK Nucleic Acids Res. NARHAD 0389 0305-1048 40 4158 4167 10.1093/nar/gkr1250 22210861 Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex. 2012 UK Nucleic Acids Res. NARHAD 0389 0305-1048 40 10532 10542 10.1093/nar/gks718 22941636 The structural basis of differential DNA sequence recognition by restriction-modification controller proteins. 2012 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 65 900 905 10.1107/S0907444909020514 19690367 Structure of the restriction-modification controller protein C.Esp1396I. 2009 10.2210/pdb4i6r/pdb pdb_00004i6r 100 1 PIXEL 2012-09-15 DECTRIS PILATUS 2M Si(111) double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.92 1.0 I04-1 Diamond 0.92 SYNCHROTRON DIAMOND BEAMLINE I04-1 9521.175 Regulatory protein 2 man polymer 96.063 SULFATE ION 3 syn non-polymer 92.094 GLYCEROL 5 syn non-polymer 18.015 water 78 nat water no no GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK HD GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK HD A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n RFL1396 sample esp1396IC 211595 Enterobacter sp. 469008 Escherichia coli BL21(DE3)pLysS Plasmid pET28 1 2.34 47.42 VAPOR DIFFUSION, HANGING DROP 7 0.1 M MMT buffer, 100 mM Sodium Sulphate, 25% PEG 1500, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-11-13 1 1 2014-06-18 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id S52A Mutant Free Protein R46A Mutant Free Protein R46A Mutant Free Protein Native Free Protein R35A Mutant Free Protein DNA Bound Tetramer DNA Bound Dimer (OL) DNA Bound Dimer (OM) RCSB Y RCSB 2012-11-30 REL REL SO4 SULFATE ION GOL GLYCEROL HOH water 3G5G pdb entry 3G5G PDB experimental model SO4 2 2 SO4 SO4 101 A GOL 1 3 GOL GOL 102 A GOL 4 3 GOL GOL 103 A GOL 5 3 GOL GOL 104 A SO4 1 2 SO4 SO4 101 B SO4 3 2 SO4 SO4 102 B GOL 2 3 GOL GOL 103 B GOL 3 3 GOL GOL 104 B HOH 3 4 HOH HOH 201 A HOH 5 4 HOH HOH 202 A HOH 8 4 HOH HOH 203 A HOH 9 4 HOH HOH 204 A HOH 10 4 HOH HOH 205 A HOH 11 4 HOH HOH 206 A HOH 12 4 HOH HOH 207 A HOH 13 4 HOH HOH 208 A HOH 15 4 HOH HOH 209 A HOH 18 4 HOH HOH 210 A HOH 22 4 HOH HOH 211 A HOH 23 4 HOH HOH 212 A HOH 24 4 HOH HOH 213 A HOH 25 4 HOH HOH 214 A HOH 28 4 HOH HOH 215 A HOH 29 4 HOH HOH 216 A HOH 30 4 HOH HOH 217 A HOH 35 4 HOH HOH 218 A HOH 37 4 HOH HOH 219 A HOH 40 4 HOH HOH 220 A HOH 42 4 HOH HOH 221 A HOH 45 4 HOH HOH 222 A HOH 46 4 HOH HOH 223 A HOH 47 4 HOH HOH 224 A HOH 49 4 HOH HOH 225 A HOH 51 4 HOH HOH 226 A HOH 54 4 HOH HOH 227 A HOH 55 4 HOH HOH 228 A HOH 57 4 HOH HOH 229 A HOH 59 4 HOH HOH 230 A HOH 62 4 HOH HOH 231 A HOH 65 4 HOH HOH 232 A HOH 67 4 HOH HOH 233 A HOH 69 4 HOH HOH 234 A HOH 70 4 HOH HOH 235 A HOH 71 4 HOH HOH 236 A HOH 73 4 HOH HOH 237 A HOH 74 4 HOH HOH 238 A HOH 75 4 HOH HOH 239 A HOH 76 4 HOH HOH 240 A HOH 1 4 HOH HOH 201 B HOH 2 4 HOH HOH 202 B HOH 4 4 HOH HOH 203 B HOH 6 4 HOH HOH 204 B HOH 7 4 HOH HOH 205 B HOH 14 4 HOH HOH 206 B HOH 16 4 HOH HOH 207 B HOH 17 4 HOH HOH 208 B HOH 19 4 HOH HOH 209 B HOH 20 4 HOH HOH 210 B HOH 21 4 HOH HOH 211 B HOH 26 4 HOH HOH 212 B HOH 27 4 HOH HOH 213 B HOH 31 4 HOH HOH 214 B HOH 32 4 HOH HOH 215 B HOH 33 4 HOH HOH 216 B HOH 34 4 HOH HOH 217 B HOH 36 4 HOH HOH 218 B HOH 39 4 HOH HOH 219 B HOH 41 4 HOH HOH 220 B HOH 43 4 HOH HOH 221 B HOH 44 4 HOH HOH 222 B HOH 48 4 HOH HOH 223 B HOH 50 4 HOH HOH 224 B HOH 52 4 HOH HOH 225 B HOH 53 4 HOH HOH 226 B HOH 56 4 HOH HOH 227 B HOH 58 4 HOH HOH 228 B HOH 60 4 HOH HOH 229 B HOH 61 4 HOH HOH 230 B HOH 63 4 HOH HOH 231 B HOH 64 4 HOH HOH 232 B HOH 66 4 HOH HOH 233 B HOH 68 4 HOH HOH 234 B HOH 72 4 HOH HOH 235 B HOH 77 4 HOH HOH 236 B HOH 78 4 HOH HOH 237 B HOH 79 4 HOH HOH 238 B 1.380 1.380 25.790 25.790 Phaser MODE: MR_AUTO n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A SER 3 n 6 SER 3 A PHE 4 n 7 PHE 4 A LEU 5 n 8 LEU 5 A LEU 6 n 9 LEU 6 A SER 7 n 10 SER 7 A LYS 8 n 11 LYS 8 A VAL 9 n 12 VAL 9 A SER 10 n 13 SER 10 A PHE 11 n 14 PHE 11 A VAL 12 n 15 VAL 12 A ILE 13 n 16 ILE 13 A LYS 14 n 17 LYS 14 A LYS 15 n 18 LYS 15 A ILE 16 n 19 ILE 16 A ARG 17 n 20 ARG 17 A LEU 18 n 21 LEU 18 A GLU 19 n 22 GLU 19 A LYS 20 n 23 LYS 20 A GLY 21 n 24 GLY 21 A MET 22 n 25 MET 22 A THR 23 n 26 THR 23 A GLN 24 n 27 GLN 24 A GLU 25 n 28 GLU 25 A ASP 26 n 29 ASP 26 A LEU 27 n 30 LEU 27 A ALA 28 n 31 ALA 28 A TYR 29 n 32 TYR 29 A LYS 30 n 33 LYS 30 A SER 31 n 34 SER 31 A ASN 32 n 35 ASN 32 A LEU 33 n 36 LEU 33 A ASP 34 n 37 ASP 34 A ARG 35 n 38 ARG 35 A THR 36 n 39 THR 36 A TYR 37 n 40 TYR 37 A ILE 38 n 41 ILE 38 A SER 39 n 42 SER 39 A GLY 40 n 43 GLY 40 A ILE 41 n 44 ILE 41 A GLU 42 n 45 GLU 42 A ARG 43 n 46 ARG 43 A ASN 44 n 47 ASN 44 A SER 45 n 48 SER 45 A ARG 46 n 49 ARG 46 A ASN 47 n 50 ASN 47 A LEU 48 n 51 LEU 48 A THR 49 n 52 THR 49 A ILE 50 n 53 ILE 50 A LYS 51 n 54 LYS 51 A SER 52 n 55 SER 52 A LEU 53 n 56 LEU 53 A GLU 54 n 57 GLU 54 A LEU 55 n 58 LEU 55 A ILE 56 n 59 ILE 56 A MET 57 n 60 MET 57 A LYS 58 n 61 LYS 58 A GLY 59 n 62 GLY 59 A LEU 60 n 63 LEU 60 A GLU 61 n 64 GLU 61 A VAL 62 n 65 VAL 62 A SER 63 n 66 SER 63 A ASP 64 n 67 ASP 64 A VAL 65 n 68 VAL 65 A VAL 66 n 69 VAL 66 A PHE 67 n 70 PHE 67 A PHE 68 n 71 PHE 68 A GLU 69 n 72 GLU 69 A MET 70 n 73 MET 70 A LEU 71 n 74 LEU 71 A ILE 72 n 75 ILE 72 A LYS 73 n 76 LYS 73 A GLU 74 n 77 GLU 74 A ILE 75 n 78 ILE 75 A LEU 76 n 79 LEU 76 A LYS 77 n 80 LYS 77 A HIS 78 n 81 HIS 78 A ASP 79 n 82 ASP 79 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B n 5 2 B SER 3 n 6 SER 3 B PHE 4 n 7 PHE 4 B LEU 5 n 8 LEU 5 B LEU 6 n 9 LEU 6 B SER 7 n 10 SER 7 B LYS 8 n 11 LYS 8 B VAL 9 n 12 VAL 9 B SER 10 n 13 SER 10 B PHE 11 n 14 PHE 11 B VAL 12 n 15 VAL 12 B ILE 13 n 16 ILE 13 B LYS 14 n 17 LYS 14 B LYS 15 n 18 LYS 15 B ILE 16 n 19 ILE 16 B ARG 17 n 20 ARG 17 B LEU 18 n 21 LEU 18 B GLU 19 n 22 GLU 19 B LYS 20 n 23 LYS 20 B GLY 21 n 24 GLY 21 B MET 22 n 25 MET 22 B THR 23 n 26 THR 23 B GLN 24 n 27 GLN 24 B GLU 25 n 28 GLU 25 B ASP 26 n 29 ASP 26 B LEU 27 n 30 LEU 27 B ALA 28 n 31 ALA 28 B TYR 29 n 32 TYR 29 B LYS 30 n 33 LYS 30 B SER 31 n 34 SER 31 B ASN 32 n 35 ASN 32 B LEU 33 n 36 LEU 33 B ASP 34 n 37 ASP 34 B ARG 35 n 38 ARG 35 B THR 36 n 39 THR 36 B TYR 37 n 40 TYR 37 B ILE 38 n 41 ILE 38 B SER 39 n 42 SER 39 B GLY 40 n 43 GLY 40 B ILE 41 n 44 ILE 41 B GLU 42 n 45 GLU 42 B ARG 43 n 46 ARG 43 B ASN 44 n 47 ASN 44 B SER 45 n 48 SER 45 B ARG 46 n 49 ARG 46 B ASN 47 n 50 ASN 47 B LEU 48 n 51 LEU 48 B THR 49 n 52 THR 49 B ILE 50 n 53 ILE 50 B LYS 51 n 54 LYS 51 B SER 52 n 55 SER 52 B LEU 53 n 56 LEU 53 B GLU 54 n 57 GLU 54 B LEU 55 n 58 LEU 55 B ILE 56 n 59 ILE 56 B MET 57 n 60 MET 57 B LYS 58 n 61 LYS 58 B GLY 59 n 62 GLY 59 B LEU 60 n 63 LEU 60 B GLU 61 n 64 GLU 61 B VAL 62 n 65 VAL 62 B SER 63 n 66 SER 63 B ASP 64 n 67 ASP 64 B VAL 65 n 68 VAL 65 B VAL 66 n 69 VAL 66 B PHE 67 n 70 PHE 67 B PHE 68 n 71 PHE 68 B GLU 69 n 72 GLU 69 B MET 70 n 73 MET 70 B LEU 71 n 74 LEU 71 B ILE 72 n 75 ILE 72 B LYS 73 n 76 LYS 73 B GLU 74 n 77 GLU 74 B ILE 75 n 78 ILE 75 B LEU 76 n 79 LEU 76 B LYS 77 n 80 LYS 77 B HIS 78 n 81 HIS 78 B ASP 79 n 82 ASP 79 B 0.0837 -0.2042 -0.0756 1.1448 0.5702 0.8208 -0.0252 -0.0255 -0.0307 0.0618 0.0245 0.0389 0.0093 0.0378 0.0007 0.1032 -0.0513 -0.0316 0.0485 0.0365 0.0314 refined 2.7060 -6.7860 -21.3690 X-RAY DIFFRACTION 1.5052 0.0240 0.6827 0.1440 0.1986 0.6833 0.0233 0.0598 0.0419 -0.0242 -0.0197 -0.0136 0.0332 0.0083 -0.0037 0.0989 -0.0509 -0.0363 0.0591 0.0376 0.0246 refined -5.1880 -15.6720 -36.8770 X-RAY DIFFRACTION A 3 A 79 X-RAY DIFFRACTION 1 A 101 A 104 X-RAY DIFFRACTION 1 A 201 A 240 X-RAY DIFFRACTION 1 B 3 B 79 X-RAY DIFFRACTION 2 B 101 B 104 X-RAY DIFFRACTION 2 B 201 B 238 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric 3330 -53 8420 1830 -47 9920 1940 -48 9820 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_566 x,y+1,z+1 crystal symmetry operation -14.8924836434 18.6865291973 37.0491071908 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_666 x+1,y+1,z+1 crystal symmetry operation 19.8675163566 18.6865291973 37.0491071908 1 A GLY -2 A GLY 1 1 Y 1 A SER -1 A SER 2 1 Y 1 A HIS 0 A HIS 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A GLU 2 A GLU 5 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER -1 B SER 2 1 Y 1 B HIS 0 B HIS 3 1 Y 1 B MET 1 B MET 4 1 Y 1 B GLU 2 B GLU 5 1 Y 1 A A O2 O GOL HOH 104 219 2.02 1 A A N O SER HOH 3 236 2.03 1 A A CG O MET HOH 57 214 2.12 A 1 A B OE1 O1 GLU GOL 54 103 2.12 1 A ASN 44 0.071 SIDE CHAIN 1 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 17 17 17 N 1 8.24 1.20 123.30 131.54 A A A OE1 CD OE2 GLU GLU GLU 25 25 25 N 1 -3.23 0.50 120.30 117.07 A A A NE CZ NH2 ARG ARG ARG 43 43 43 N 1 9.92 0.90 118.30 128.22 A A A CB CG OD1 ASP ASP ASP 64 64 64 N 1 -4.49 0.70 120.80 116.31 A A A CB CG CD2 PHE PHE PHE 67 67 67 N 1 11.02 1.70 111.00 122.02 B B B CB CG CD1 LEU LEU LEU 6 6 6 N 1 -13.44 1.70 111.00 97.56 B B B CB CG CD2 LEU LEU LEU 6 6 6 N 1 -14.29 2.30 111.70 97.41 B B B CD CE NZ LYS LYS LYS 20 20 20 N 1 3.74 0.50 120.30 124.04 B B B NE CZ NH1 ARG ARG ARG 46 46 46 N 1 A A CG CD2 PHE PHE 4 4 0.093 0.015 1.383 1.476 N 1 A A CD OE2 GLU GLU 25 25 0.081 0.011 1.252 1.333 N 1 A A CB OG SER SER 45 45 0.079 0.013 1.418 1.497 N 1 B B CB OG SER SER 7 7 -0.091 0.013 1.418 1.327 N 1 B B CE1 CZ TYR TYR 29 29 -0.085 0.013 1.381 1.296 N 1 B B CD OE2 GLU GLU 69 69 0.067 0.011 1.252 1.319 N 1 A ASN 44 -160.09 118.67 56.180 15.780 2.000 0.0200 0.0400 0.0200 -0.0200 -0.0200 0.0000 0.9700 0.9610 0.1815 0.1489 0.1505 1.3800 25.7900 1470 29524 5.0000 83.5300 0.1887 0.1558 1.000 0.300 0.8890 1.6590 0.0330 0.0561 0.0610 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0560 0.0610 0.8000 0.8000 1.2000 pdb entry 3G5G MAXIMUM LIKELIHOOD MASK 1.3800 25.7900 78 1381 45 0 1258 0.030 0.019 1359 0.002 0.020 1400 2.696 2.029 1821 1.106 3.000 3250 5.032 5.000 172 20.565 24.444 54 13.517 15.000 300 22.762 15.000 8 0.177 0.200 220 0.014 0.020 1426 0.002 0.020 274 0.2030 0.1790 1.4180 98 2049 2147 20 83.0600 1.38 37.049 4I6R 112030 31070 0.049 1 14.300 3.800 83.500 0.370 1.380 1.410 4.000 5986 1570 1 3.800 83.800 0.042 7.310 25.790 34.900 909 234 1 3.900 96.700 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil Evans 03/07/12 http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html Aimless program 0.1.26 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Tue Jul 10 12:42:19 2012 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.1 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection GDA High Resolution Crystal Structure of the Wild-Type Restriction-Modification Controller Protein C.Esp1396I (Triclinic form) 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N A SER 3 A SER 6 HELX_P A LYS 20 A LYS 23 1 1 18 A THR 23 A THR 26 HELX_P A ASN 32 A ASN 35 1 2 10 A ASP 34 A ASP 37 HELX_P A ASN 44 A ASN 47 1 3 11 A THR 49 A THR 52 HELX_P A GLU 61 A GLU 64 1 4 13 A SER 63 A SER 66 HELX_P A ASP 79 A ASP 82 1 5 17 B PHE 4 B PHE 7 HELX_P B LYS 20 B LYS 23 1 6 17 B THR 23 B THR 26 HELX_P B ASN 32 B ASN 35 1 7 10 B ASP 34 B ASP 37 HELX_P B ASN 44 B ASN 47 1 8 11 B THR 49 B THR 52 HELX_P B GLU 61 B GLU 64 1 9 13 B SER 63 B SER 66 HELX_P B ASP 79 B ASP 82 1 10 17 TRANSCRIPTION Restriction-modification, helix-turn-helix, transcriptional regulator, DNA, TRANSCRIPTION Q8GGH0_9ENTR UNP 1 1 Q8GGH0 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD 1 79 4I6R 1 79 Q8GGH0 A 1 4 82 1 79 4I6R 1 79 Q8GGH0 B 1 4 82 1 expression tag GLY -2 4I6R A Q8GGH0 UNP 1 1 expression tag SER -1 4I6R A Q8GGH0 UNP 2 1 expression tag HIS 0 4I6R A Q8GGH0 UNP 3 2 expression tag GLY -2 4I6R B Q8GGH0 UNP 1 2 expression tag SER -1 4I6R B Q8GGH0 UNP 2 2 expression tag HIS 0 4I6R B Q8GGH0 UNP 3 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 9 BINDING SITE FOR RESIDUE GOL A 102 A GOL 102 Software 6 BINDING SITE FOR RESIDUE GOL A 103 A GOL 103 Software 4 BINDING SITE FOR RESIDUE GOL A 104 A GOL 104 Software 7 BINDING SITE FOR RESIDUE SO4 B 101 B SO4 101 Software 10 BINDING SITE FOR RESIDUE SO4 B 102 B SO4 102 Software 4 BINDING SITE FOR RESIDUE GOL B 103 B GOL 103 Software 6 BINDING SITE FOR RESIDUE GOL B 104 B GOL 104 Software 5 A ARG 35 A ARG 38 9 1_555 A THR 36 A THR 39 9 1_555 A SER 39 A SER 42 9 1_555 A ARG 43 A ARG 46 9 1_555 A HOH 203 K HOH 9 1_555 A HOH 205 K HOH 9 1_555 B HIS 78 B HIS 81 9 1_566 B GOL 104 J GOL 9 1_566 B HOH 211 L HOH 9 1_566 A SER 3 A SER 6 6 1_555 A PHE 4 A PHE 7 6 1_555 A LEU 5 A LEU 8 6 1_555 A ASP 79 A ASP 82 6 1_555 B GLU 54 B GLU 57 6 1_555 B HOH 208 L HOH 6 1_555 A LYS 15 A LYS 18 4 1_555 A LEU 18 A LEU 21 4 1_555 A GLU 19 A GLU 22 4 1_555 B LEU 18 B LEU 21 4 1_666 A LYS 14 A LYS 17 7 1_555 A GLN 24 A GLN 27 7 1_555 A SER 39 A SER 42 7 1_555 A GLU 42 A GLU 45 7 1_555 A ARG 43 A ARG 46 7 1_555 A HOH 204 K HOH 7 1_555 A HOH 219 K HOH 7 1_555 A ARG 17 A ARG 20 10 1_444 A THR 23 A THR 26 10 1_444 A GLN 24 A GLN 27 10 1_444 A HOH 204 K HOH 10 1_444 B THR 23 B THR 26 10 1_555 B GLN 24 B GLN 27 10 1_555 B GLU 25 B GLU 28 10 1_555 B ARG 35 B ARG 38 10 1_555 B HOH 201 L HOH 10 1_555 B HOH 202 L HOH 10 1_555 A ARG 43 A ARG 46 4 1_444 B GLU 25 B GLU 28 4 1_555 B LYS 77 B LYS 80 4 1_455 B HIS 78 B HIS 81 4 1_455 A GLU 54 A GLU 57 6 1_555 A HOH 209 K HOH 6 1_555 B SER 3 B SER 6 6 1_555 B PHE 4 B PHE 7 6 1_555 B LEU 5 B LEU 8 6 1_555 B ASP 79 B ASP 82 6 1_555 A ARG 43 A ARG 46 5 1_544 A SO4 101 C SO4 5 1_544 B LYS 8 B LYS 11 5 1_555 B GLU 74 B GLU 77 5 1_555 B HIS 78 B HIS 81 5 1_555 1 P 1