0.028769
0.003024
0.010039
-0.000000
0.028911
0.012410
0.000000
-0.000000
0.026991
0.000000
0.000000
0.000000
Martin, R.N.A.
McGeehan, J.E.
Kneale, G.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
110.470
105.600
96.000
34.760
34.780
41.860
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
S
N
288
N
O
N
289
N
O
N
290
N
O
N
291
N
O
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
R
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
O
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
US
Plos One
1932-6203
9
e98365
e98365
10.1371/journal.pone.0098365
24887147
Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
2014
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
65
900
905
10.1107/S0907444909020514
19690367
Structure of the restriction-modification controller protein C.Esp1396I.
2009
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
4158
4167
10.1093/nar/gkr1250
22210861
Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex.
2012
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
10532
10542
10.1093/nar/gks718
22941636
The structural basis of differential DNA sequence recognition by restriction-modification controller proteins.
2012
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
65
900
905
10.1107/S0907444909020514
19690367
Structure of the restriction-modification controller protein C.Esp1396I.
2009
10.2210/pdb4i6r/pdb
pdb_00004i6r
100
1
PIXEL
2012-09-15
DECTRIS PILATUS 2M
Si(111) double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.92
1.0
I04-1
Diamond
0.92
SYNCHROTRON
DIAMOND BEAMLINE I04-1
9521.175
Regulatory protein
2
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
92.094
GLYCEROL
5
syn
non-polymer
18.015
water
78
nat
water
no
no
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK
HD
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK
HD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RFL1396
sample
esp1396IC
211595
Enterobacter sp.
469008
Escherichia coli
BL21(DE3)pLysS
Plasmid
pET28
1
2.34
47.42
VAPOR DIFFUSION, HANGING DROP
7
0.1 M MMT buffer, 100 mM Sodium Sulphate, 25% PEG 1500, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-11-13
1
1
2014-06-18
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
S52A Mutant Free Protein
R46A Mutant Free Protein
R46A Mutant Free Protein
Native Free Protein
R35A Mutant Free Protein
DNA Bound Tetramer
DNA Bound Dimer (OL)
DNA Bound Dimer (OM)
RCSB
Y
RCSB
2012-11-30
REL
REL
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
3G5G
pdb entry 3G5G
PDB
experimental model
SO4
2
2
SO4
SO4
101
A
GOL
1
3
GOL
GOL
102
A
GOL
4
3
GOL
GOL
103
A
GOL
5
3
GOL
GOL
104
A
SO4
1
2
SO4
SO4
101
B
SO4
3
2
SO4
SO4
102
B
GOL
2
3
GOL
GOL
103
B
GOL
3
3
GOL
GOL
104
B
HOH
3
4
HOH
HOH
201
A
HOH
5
4
HOH
HOH
202
A
HOH
8
4
HOH
HOH
203
A
HOH
9
4
HOH
HOH
204
A
HOH
10
4
HOH
HOH
205
A
HOH
11
4
HOH
HOH
206
A
HOH
12
4
HOH
HOH
207
A
HOH
13
4
HOH
HOH
208
A
HOH
15
4
HOH
HOH
209
A
HOH
18
4
HOH
HOH
210
A
HOH
22
4
HOH
HOH
211
A
HOH
23
4
HOH
HOH
212
A
HOH
24
4
HOH
HOH
213
A
HOH
25
4
HOH
HOH
214
A
HOH
28
4
HOH
HOH
215
A
HOH
29
4
HOH
HOH
216
A
HOH
30
4
HOH
HOH
217
A
HOH
35
4
HOH
HOH
218
A
HOH
37
4
HOH
HOH
219
A
HOH
40
4
HOH
HOH
220
A
HOH
42
4
HOH
HOH
221
A
HOH
45
4
HOH
HOH
222
A
HOH
46
4
HOH
HOH
223
A
HOH
47
4
HOH
HOH
224
A
HOH
49
4
HOH
HOH
225
A
HOH
51
4
HOH
HOH
226
A
HOH
54
4
HOH
HOH
227
A
HOH
55
4
HOH
HOH
228
A
HOH
57
4
HOH
HOH
229
A
HOH
59
4
HOH
HOH
230
A
HOH
62
4
HOH
HOH
231
A
HOH
65
4
HOH
HOH
232
A
HOH
67
4
HOH
HOH
233
A
HOH
69
4
HOH
HOH
234
A
HOH
70
4
HOH
HOH
235
A
HOH
71
4
HOH
HOH
236
A
HOH
73
4
HOH
HOH
237
A
HOH
74
4
HOH
HOH
238
A
HOH
75
4
HOH
HOH
239
A
HOH
76
4
HOH
HOH
240
A
HOH
1
4
HOH
HOH
201
B
HOH
2
4
HOH
HOH
202
B
HOH
4
4
HOH
HOH
203
B
HOH
6
4
HOH
HOH
204
B
HOH
7
4
HOH
HOH
205
B
HOH
14
4
HOH
HOH
206
B
HOH
16
4
HOH
HOH
207
B
HOH
17
4
HOH
HOH
208
B
HOH
19
4
HOH
HOH
209
B
HOH
20
4
HOH
HOH
210
B
HOH
21
4
HOH
HOH
211
B
HOH
26
4
HOH
HOH
212
B
HOH
27
4
HOH
HOH
213
B
HOH
31
4
HOH
HOH
214
B
HOH
32
4
HOH
HOH
215
B
HOH
33
4
HOH
HOH
216
B
HOH
34
4
HOH
HOH
217
B
HOH
36
4
HOH
HOH
218
B
HOH
39
4
HOH
HOH
219
B
HOH
41
4
HOH
HOH
220
B
HOH
43
4
HOH
HOH
221
B
HOH
44
4
HOH
HOH
222
B
HOH
48
4
HOH
HOH
223
B
HOH
50
4
HOH
HOH
224
B
HOH
52
4
HOH
HOH
225
B
HOH
53
4
HOH
HOH
226
B
HOH
56
4
HOH
HOH
227
B
HOH
58
4
HOH
HOH
228
B
HOH
60
4
HOH
HOH
229
B
HOH
61
4
HOH
HOH
230
B
HOH
63
4
HOH
HOH
231
B
HOH
64
4
HOH
HOH
232
B
HOH
66
4
HOH
HOH
233
B
HOH
68
4
HOH
HOH
234
B
HOH
72
4
HOH
HOH
235
B
HOH
77
4
HOH
HOH
236
B
HOH
78
4
HOH
HOH
237
B
HOH
79
4
HOH
HOH
238
B
1.380
1.380
25.790
25.790
Phaser MODE: MR_AUTO
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
SER
3
n
6
SER
3
A
PHE
4
n
7
PHE
4
A
LEU
5
n
8
LEU
5
A
LEU
6
n
9
LEU
6
A
SER
7
n
10
SER
7
A
LYS
8
n
11
LYS
8
A
VAL
9
n
12
VAL
9
A
SER
10
n
13
SER
10
A
PHE
11
n
14
PHE
11
A
VAL
12
n
15
VAL
12
A
ILE
13
n
16
ILE
13
A
LYS
14
n
17
LYS
14
A
LYS
15
n
18
LYS
15
A
ILE
16
n
19
ILE
16
A
ARG
17
n
20
ARG
17
A
LEU
18
n
21
LEU
18
A
GLU
19
n
22
GLU
19
A
LYS
20
n
23
LYS
20
A
GLY
21
n
24
GLY
21
A
MET
22
n
25
MET
22
A
THR
23
n
26
THR
23
A
GLN
24
n
27
GLN
24
A
GLU
25
n
28
GLU
25
A
ASP
26
n
29
ASP
26
A
LEU
27
n
30
LEU
27
A
ALA
28
n
31
ALA
28
A
TYR
29
n
32
TYR
29
A
LYS
30
n
33
LYS
30
A
SER
31
n
34
SER
31
A
ASN
32
n
35
ASN
32
A
LEU
33
n
36
LEU
33
A
ASP
34
n
37
ASP
34
A
ARG
35
n
38
ARG
35
A
THR
36
n
39
THR
36
A
TYR
37
n
40
TYR
37
A
ILE
38
n
41
ILE
38
A
SER
39
n
42
SER
39
A
GLY
40
n
43
GLY
40
A
ILE
41
n
44
ILE
41
A
GLU
42
n
45
GLU
42
A
ARG
43
n
46
ARG
43
A
ASN
44
n
47
ASN
44
A
SER
45
n
48
SER
45
A
ARG
46
n
49
ARG
46
A
ASN
47
n
50
ASN
47
A
LEU
48
n
51
LEU
48
A
THR
49
n
52
THR
49
A
ILE
50
n
53
ILE
50
A
LYS
51
n
54
LYS
51
A
SER
52
n
55
SER
52
A
LEU
53
n
56
LEU
53
A
GLU
54
n
57
GLU
54
A
LEU
55
n
58
LEU
55
A
ILE
56
n
59
ILE
56
A
MET
57
n
60
MET
57
A
LYS
58
n
61
LYS
58
A
GLY
59
n
62
GLY
59
A
LEU
60
n
63
LEU
60
A
GLU
61
n
64
GLU
61
A
VAL
62
n
65
VAL
62
A
SER
63
n
66
SER
63
A
ASP
64
n
67
ASP
64
A
VAL
65
n
68
VAL
65
A
VAL
66
n
69
VAL
66
A
PHE
67
n
70
PHE
67
A
PHE
68
n
71
PHE
68
A
GLU
69
n
72
GLU
69
A
MET
70
n
73
MET
70
A
LEU
71
n
74
LEU
71
A
ILE
72
n
75
ILE
72
A
LYS
73
n
76
LYS
73
A
GLU
74
n
77
GLU
74
A
ILE
75
n
78
ILE
75
A
LEU
76
n
79
LEU
76
A
LYS
77
n
80
LYS
77
A
HIS
78
n
81
HIS
78
A
ASP
79
n
82
ASP
79
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
SER
3
n
6
SER
3
B
PHE
4
n
7
PHE
4
B
LEU
5
n
8
LEU
5
B
LEU
6
n
9
LEU
6
B
SER
7
n
10
SER
7
B
LYS
8
n
11
LYS
8
B
VAL
9
n
12
VAL
9
B
SER
10
n
13
SER
10
B
PHE
11
n
14
PHE
11
B
VAL
12
n
15
VAL
12
B
ILE
13
n
16
ILE
13
B
LYS
14
n
17
LYS
14
B
LYS
15
n
18
LYS
15
B
ILE
16
n
19
ILE
16
B
ARG
17
n
20
ARG
17
B
LEU
18
n
21
LEU
18
B
GLU
19
n
22
GLU
19
B
LYS
20
n
23
LYS
20
B
GLY
21
n
24
GLY
21
B
MET
22
n
25
MET
22
B
THR
23
n
26
THR
23
B
GLN
24
n
27
GLN
24
B
GLU
25
n
28
GLU
25
B
ASP
26
n
29
ASP
26
B
LEU
27
n
30
LEU
27
B
ALA
28
n
31
ALA
28
B
TYR
29
n
32
TYR
29
B
LYS
30
n
33
LYS
30
B
SER
31
n
34
SER
31
B
ASN
32
n
35
ASN
32
B
LEU
33
n
36
LEU
33
B
ASP
34
n
37
ASP
34
B
ARG
35
n
38
ARG
35
B
THR
36
n
39
THR
36
B
TYR
37
n
40
TYR
37
B
ILE
38
n
41
ILE
38
B
SER
39
n
42
SER
39
B
GLY
40
n
43
GLY
40
B
ILE
41
n
44
ILE
41
B
GLU
42
n
45
GLU
42
B
ARG
43
n
46
ARG
43
B
ASN
44
n
47
ASN
44
B
SER
45
n
48
SER
45
B
ARG
46
n
49
ARG
46
B
ASN
47
n
50
ASN
47
B
LEU
48
n
51
LEU
48
B
THR
49
n
52
THR
49
B
ILE
50
n
53
ILE
50
B
LYS
51
n
54
LYS
51
B
SER
52
n
55
SER
52
B
LEU
53
n
56
LEU
53
B
GLU
54
n
57
GLU
54
B
LEU
55
n
58
LEU
55
B
ILE
56
n
59
ILE
56
B
MET
57
n
60
MET
57
B
LYS
58
n
61
LYS
58
B
GLY
59
n
62
GLY
59
B
LEU
60
n
63
LEU
60
B
GLU
61
n
64
GLU
61
B
VAL
62
n
65
VAL
62
B
SER
63
n
66
SER
63
B
ASP
64
n
67
ASP
64
B
VAL
65
n
68
VAL
65
B
VAL
66
n
69
VAL
66
B
PHE
67
n
70
PHE
67
B
PHE
68
n
71
PHE
68
B
GLU
69
n
72
GLU
69
B
MET
70
n
73
MET
70
B
LEU
71
n
74
LEU
71
B
ILE
72
n
75
ILE
72
B
LYS
73
n
76
LYS
73
B
GLU
74
n
77
GLU
74
B
ILE
75
n
78
ILE
75
B
LEU
76
n
79
LEU
76
B
LYS
77
n
80
LYS
77
B
HIS
78
n
81
HIS
78
B
ASP
79
n
82
ASP
79
B
0.0837
-0.2042
-0.0756
1.1448
0.5702
0.8208
-0.0252
-0.0255
-0.0307
0.0618
0.0245
0.0389
0.0093
0.0378
0.0007
0.1032
-0.0513
-0.0316
0.0485
0.0365
0.0314
refined
2.7060
-6.7860
-21.3690
X-RAY DIFFRACTION
1.5052
0.0240
0.6827
0.1440
0.1986
0.6833
0.0233
0.0598
0.0419
-0.0242
-0.0197
-0.0136
0.0332
0.0083
-0.0037
0.0989
-0.0509
-0.0363
0.0591
0.0376
0.0246
refined
-5.1880
-15.6720
-36.8770
X-RAY DIFFRACTION
A
3
A
79
X-RAY DIFFRACTION
1
A
101
A
104
X-RAY DIFFRACTION
1
A
201
A
240
X-RAY DIFFRACTION
1
B
3
B
79
X-RAY DIFFRACTION
2
B
101
B
104
X-RAY DIFFRACTION
2
B
201
B
238
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
3330
-53
8420
1830
-47
9920
1940
-48
9820
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_566
x,y+1,z+1
crystal symmetry operation
-14.8924836434
18.6865291973
37.0491071908
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_666
x+1,y+1,z+1
crystal symmetry operation
19.8675163566
18.6865291973
37.0491071908
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
HIS
0
A
HIS
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
A
GLU
2
A
GLU
5
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
SER
-1
B
SER
2
1
Y
1
B
HIS
0
B
HIS
3
1
Y
1
B
MET
1
B
MET
4
1
Y
1
B
GLU
2
B
GLU
5
1
Y
1
A
A
O2
O
GOL
HOH
104
219
2.02
1
A
A
N
O
SER
HOH
3
236
2.03
1
A
A
CG
O
MET
HOH
57
214
2.12
A
1
A
B
OE1
O1
GLU
GOL
54
103
2.12
1
A
ASN
44
0.071
SIDE CHAIN
1
3.07
0.50
120.30
123.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
17
17
17
N
1
8.24
1.20
123.30
131.54
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
25
25
25
N
1
-3.23
0.50
120.30
117.07
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
43
43
43
N
1
9.92
0.90
118.30
128.22
A
A
A
CB
CG
OD1
ASP
ASP
ASP
64
64
64
N
1
-4.49
0.70
120.80
116.31
A
A
A
CB
CG
CD2
PHE
PHE
PHE
67
67
67
N
1
11.02
1.70
111.00
122.02
B
B
B
CB
CG
CD1
LEU
LEU
LEU
6
6
6
N
1
-13.44
1.70
111.00
97.56
B
B
B
CB
CG
CD2
LEU
LEU
LEU
6
6
6
N
1
-14.29
2.30
111.70
97.41
B
B
B
CD
CE
NZ
LYS
LYS
LYS
20
20
20
N
1
3.74
0.50
120.30
124.04
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
46
46
46
N
1
A
A
CG
CD2
PHE
PHE
4
4
0.093
0.015
1.383
1.476
N
1
A
A
CD
OE2
GLU
GLU
25
25
0.081
0.011
1.252
1.333
N
1
A
A
CB
OG
SER
SER
45
45
0.079
0.013
1.418
1.497
N
1
B
B
CB
OG
SER
SER
7
7
-0.091
0.013
1.418
1.327
N
1
B
B
CE1
CZ
TYR
TYR
29
29
-0.085
0.013
1.381
1.296
N
1
B
B
CD
OE2
GLU
GLU
69
69
0.067
0.011
1.252
1.319
N
1
A
ASN
44
-160.09
118.67
56.180
15.780
2.000
0.0200
0.0400
0.0200
-0.0200
-0.0200
0.0000
0.9700
0.9610
0.1815
0.1489
0.1505
1.3800
25.7900
1470
29524
5.0000
83.5300
0.1887
0.1558
1.000
0.300
0.8890
1.6590
0.0330
0.0561
0.0610
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0560
0.0610
0.8000
0.8000
1.2000
pdb entry 3G5G
MAXIMUM LIKELIHOOD
MASK
1.3800
25.7900
78
1381
45
0
1258
0.030
0.019
1359
0.002
0.020
1400
2.696
2.029
1821
1.106
3.000
3250
5.032
5.000
172
20.565
24.444
54
13.517
15.000
300
22.762
15.000
8
0.177
0.200
220
0.014
0.020
1426
0.002
0.020
274
0.2030
0.1790
1.4180
98
2049
2147
20
83.0600
1.38
37.049
4I6R
112030
31070
0.049
1
14.300
3.800
83.500
0.370
1.380
1.410
4.000
5986
1570
1
3.800
83.800
0.042
7.310
25.790
34.900
909
234
1
3.900
96.700
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil Evans
03/07/12
http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
Aimless
program
0.1.26
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Jul 10 12:42:19 2012 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.5.1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
GDA
High Resolution Crystal Structure of the Wild-Type Restriction-Modification Controller Protein C.Esp1396I (Triclinic form)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
SER
3
A
SER
6
HELX_P
A
LYS
20
A
LYS
23
1
1
18
A
THR
23
A
THR
26
HELX_P
A
ASN
32
A
ASN
35
1
2
10
A
ASP
34
A
ASP
37
HELX_P
A
ASN
44
A
ASN
47
1
3
11
A
THR
49
A
THR
52
HELX_P
A
GLU
61
A
GLU
64
1
4
13
A
SER
63
A
SER
66
HELX_P
A
ASP
79
A
ASP
82
1
5
17
B
PHE
4
B
PHE
7
HELX_P
B
LYS
20
B
LYS
23
1
6
17
B
THR
23
B
THR
26
HELX_P
B
ASN
32
B
ASN
35
1
7
10
B
ASP
34
B
ASP
37
HELX_P
B
ASN
44
B
ASN
47
1
8
11
B
THR
49
B
THR
52
HELX_P
B
GLU
61
B
GLU
64
1
9
13
B
SER
63
B
SER
66
HELX_P
B
ASP
79
B
ASP
82
1
10
17
TRANSCRIPTION
Restriction-modification, helix-turn-helix, transcriptional regulator, DNA, TRANSCRIPTION
Q8GGH0_9ENTR
UNP
1
1
Q8GGH0
MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD
1
79
4I6R
1
79
Q8GGH0
A
1
4
82
1
79
4I6R
1
79
Q8GGH0
B
1
4
82
1
expression tag
GLY
-2
4I6R
A
Q8GGH0
UNP
1
1
expression tag
SER
-1
4I6R
A
Q8GGH0
UNP
2
1
expression tag
HIS
0
4I6R
A
Q8GGH0
UNP
3
2
expression tag
GLY
-2
4I6R
B
Q8GGH0
UNP
1
2
expression tag
SER
-1
4I6R
B
Q8GGH0
UNP
2
2
expression tag
HIS
0
4I6R
B
Q8GGH0
UNP
3
BINDING SITE FOR RESIDUE SO4 A 101
A
SO4
101
Software
9
BINDING SITE FOR RESIDUE GOL A 102
A
GOL
102
Software
6
BINDING SITE FOR RESIDUE GOL A 103
A
GOL
103
Software
4
BINDING SITE FOR RESIDUE GOL A 104
A
GOL
104
Software
7
BINDING SITE FOR RESIDUE SO4 B 101
B
SO4
101
Software
10
BINDING SITE FOR RESIDUE SO4 B 102
B
SO4
102
Software
4
BINDING SITE FOR RESIDUE GOL B 103
B
GOL
103
Software
6
BINDING SITE FOR RESIDUE GOL B 104
B
GOL
104
Software
5
A
ARG
35
A
ARG
38
9
1_555
A
THR
36
A
THR
39
9
1_555
A
SER
39
A
SER
42
9
1_555
A
ARG
43
A
ARG
46
9
1_555
A
HOH
203
K
HOH
9
1_555
A
HOH
205
K
HOH
9
1_555
B
HIS
78
B
HIS
81
9
1_566
B
GOL
104
J
GOL
9
1_566
B
HOH
211
L
HOH
9
1_566
A
SER
3
A
SER
6
6
1_555
A
PHE
4
A
PHE
7
6
1_555
A
LEU
5
A
LEU
8
6
1_555
A
ASP
79
A
ASP
82
6
1_555
B
GLU
54
B
GLU
57
6
1_555
B
HOH
208
L
HOH
6
1_555
A
LYS
15
A
LYS
18
4
1_555
A
LEU
18
A
LEU
21
4
1_555
A
GLU
19
A
GLU
22
4
1_555
B
LEU
18
B
LEU
21
4
1_666
A
LYS
14
A
LYS
17
7
1_555
A
GLN
24
A
GLN
27
7
1_555
A
SER
39
A
SER
42
7
1_555
A
GLU
42
A
GLU
45
7
1_555
A
ARG
43
A
ARG
46
7
1_555
A
HOH
204
K
HOH
7
1_555
A
HOH
219
K
HOH
7
1_555
A
ARG
17
A
ARG
20
10
1_444
A
THR
23
A
THR
26
10
1_444
A
GLN
24
A
GLN
27
10
1_444
A
HOH
204
K
HOH
10
1_444
B
THR
23
B
THR
26
10
1_555
B
GLN
24
B
GLN
27
10
1_555
B
GLU
25
B
GLU
28
10
1_555
B
ARG
35
B
ARG
38
10
1_555
B
HOH
201
L
HOH
10
1_555
B
HOH
202
L
HOH
10
1_555
A
ARG
43
A
ARG
46
4
1_444
B
GLU
25
B
GLU
28
4
1_555
B
LYS
77
B
LYS
80
4
1_455
B
HIS
78
B
HIS
81
4
1_455
A
GLU
54
A
GLU
57
6
1_555
A
HOH
209
K
HOH
6
1_555
B
SER
3
B
SER
6
6
1_555
B
PHE
4
B
PHE
7
6
1_555
B
LEU
5
B
LEU
8
6
1_555
B
ASP
79
B
ASP
82
6
1_555
A
ARG
43
A
ARG
46
5
1_544
A
SO4
101
C
SO4
5
1_544
B
LYS
8
B
LYS
11
5
1_555
B
GLU
74
B
GLU
77
5
1_555
B
HIS
78
B
HIS
81
5
1_555
1
P 1