0.015069
0.000000
0.000000
0.000000
0.013822
0.000000
0.000000
0.000000
0.007503
0.000000
0.000000
0.000000
Giannese, F.
Degano, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
66.360
72.350
133.280
C12 H17 N5 O3
279.295
(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
R
C
N
4
R
C
N
5
N
O
N
6
N
N
N
7
N
C
N
8
S
C
N
9
N
O
N
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
N
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
N
Y
18
N
N
Y
19
N
C
Y
20
N
N
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
CA
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
Y
180
N
C
Y
181
N
N
Y
182
N
C
Y
183
N
C
Y
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
S
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
N
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
S
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
NI
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
R
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
N
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
N
N
392
N
O
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
Y
11
N
doub
Y
12
N
sing
N
13
N
sing
Y
14
N
sing
Y
15
N
sing
Y
16
N
sing
Y
17
N
doub
Y
18
N
doub
Y
19
N
sing
N
20
N
sing
Y
21
N
sing
Y
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
1553
1566
10.1107/S0907444913010792
23897478
Structures of purine nucleosidase from Trypanosoma brucei bound to isozyme-specific trypanocidals and a novel metalorganic inhibitor
2013
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
359
331
346
10.1016/j.jmb.2006.03.026
16630632
Transition-state complex of the purine-specific nucleoside hydrolase of T. vivax: enzyme conformational changes and implications for catalysis
2006
US
Biochemistry
BICHAW
0033
0006-2960
49
8999
9010
10.1021/bi100697d
20825170
Structure and mechanism of the 6-oxopurine nucleosidase from Trypanosoma brucei brucei
2010
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
271
21713
21719
8702965
Purine-specific nucleoside N-ribohydrolase from Trypanosoma brucei brucei. Purification, specificity, and kinetic mechanism
1996
10.2210/pdb4i71/pdb
pdb_00004i71
100
1
CCD
2010-02-08
ADSC QUANTUM 315r
Silicon crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.976
1.0
ID29
ESRF
0.976
SYNCHROTRON
ESRF BEAMLINE ID29
36167.582
Inosine-adenosine-guanosine-nucleoside hydrolase
3.2.2.1
1
man
polymer
279.295
(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
58.693
NICKEL (II) ION
4
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
282
nat
water
no
no
GSHMAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAMHRLIKTPLFPIGKSTATAVN
AFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSK
VEECVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQM
VGTMWAMSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRASGEGKPCVHVARNPSKQMFH
DLVFASTRVC
GSHMAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAMHRLIKTPLFPIGKSTATAVN
AFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSK
VEECVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQM
VGTMWAMSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRASGEGKPCVHVARNPSKQMFH
DLVFASTRVC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
927/4 GUTat10.1
sample
Tb927.3.2960
999953
Trypanosoma brucei brucei
562
Escherichia coli
BL21(DE3)
plasmid
pET28
1
2.21
44.38
VAPOR DIFFUSION
8.0
0.1M Tris, 19% PEGMME2000, 10mM Ni2SO4, pH 8.0, VAPOR DIFFUSION, temperature 292K
292
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-07
1
1
2013-12-18
1
2
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
T.vivax IAGNH bound to a N-methylaryl iminoribitol inhibitor
T. brucei IGNH
RCSB
Y
PDBJ
2012-11-30
REL
REL
AGV
(2R,3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidine-3,4-diol
CA
CALCIUM ION
NI
NICKEL (II) ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
1KIC
PDB
experimental model
AGV
402
2
AGV
AGV
401
A
CA
401
3
CA
CA
402
A
NI
1
4
NI
NI
403
A
NI
2
4
NI
NI
404
A
TRS
3
5
TRS
TRS
405
A
NI
4
4
NI
NI
406
A
NI
5
4
NI
NI
407
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
69
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
78
6
HOH
HOH
578
A
HOH
79
6
HOH
HOH
579
A
HOH
80
6
HOH
HOH
580
A
HOH
81
6
HOH
HOH
581
A
HOH
82
6
HOH
HOH
582
A
HOH
83
6
HOH
HOH
583
A
HOH
84
6
HOH
HOH
584
A
HOH
85
6
HOH
HOH
585
A
HOH
86
6
HOH
HOH
586
A
HOH
87
6
HOH
HOH
587
A
HOH
88
6
HOH
HOH
588
A
HOH
89
6
HOH
HOH
589
A
HOH
90
6
HOH
HOH
590
A
HOH
91
6
HOH
HOH
591
A
HOH
92
6
HOH
HOH
592
A
HOH
93
6
HOH
HOH
593
A
HOH
94
6
HOH
HOH
594
A
HOH
95
6
HOH
HOH
595
A
HOH
96
6
HOH
HOH
596
A
HOH
97
6
HOH
HOH
597
A
HOH
98
6
HOH
HOH
598
A
HOH
99
6
HOH
HOH
599
A
HOH
100
6
HOH
HOH
600
A
HOH
101
6
HOH
HOH
601
A
HOH
102
6
HOH
HOH
602
A
HOH
103
6
HOH
HOH
603
A
HOH
104
6
HOH
HOH
604
A
HOH
105
6
HOH
HOH
605
A
HOH
106
6
HOH
HOH
606
A
HOH
107
6
HOH
HOH
607
A
HOH
108
6
HOH
HOH
608
A
HOH
109
6
HOH
HOH
609
A
HOH
110
6
HOH
HOH
610
A
HOH
111
6
HOH
HOH
611
A
HOH
112
6
HOH
HOH
612
A
HOH
113
6
HOH
HOH
613
A
HOH
114
6
HOH
HOH
614
A
HOH
115
6
HOH
HOH
615
A
HOH
116
6
HOH
HOH
616
A
HOH
117
6
HOH
HOH
617
A
HOH
118
6
HOH
HOH
618
A
HOH
119
6
HOH
HOH
619
A
HOH
120
6
HOH
HOH
620
A
HOH
121
6
HOH
HOH
621
A
HOH
122
6
HOH
HOH
622
A
HOH
123
6
HOH
HOH
623
A
HOH
124
6
HOH
HOH
624
A
HOH
125
6
HOH
HOH
625
A
HOH
126
6
HOH
HOH
626
A
HOH
127
6
HOH
HOH
627
A
HOH
128
6
HOH
HOH
628
A
HOH
129
6
HOH
HOH
629
A
HOH
130
6
HOH
HOH
630
A
HOH
131
6
HOH
HOH
631
A
HOH
132
6
HOH
HOH
632
A
HOH
133
6
HOH
HOH
633
A
HOH
134
6
HOH
HOH
634
A
HOH
135
6
HOH
HOH
635
A
HOH
136
6
HOH
HOH
636
A
HOH
137
6
HOH
HOH
637
A
HOH
138
6
HOH
HOH
638
A
HOH
139
6
HOH
HOH
639
A
HOH
140
6
HOH
HOH
640
A
HOH
141
6
HOH
HOH
641
A
HOH
142
6
HOH
HOH
642
A
HOH
143
6
HOH
HOH
643
A
HOH
144
6
HOH
HOH
644
A
HOH
145
6
HOH
HOH
645
A
HOH
146
6
HOH
HOH
646
A
HOH
147
6
HOH
HOH
647
A
HOH
148
6
HOH
HOH
648
A
HOH
149
6
HOH
HOH
649
A
HOH
150
6
HOH
HOH
650
A
HOH
151
6
HOH
HOH
651
A
HOH
152
6
HOH
HOH
652
A
HOH
153
6
HOH
HOH
653
A
HOH
154
6
HOH
HOH
654
A
HOH
155
6
HOH
HOH
655
A
HOH
156
6
HOH
HOH
656
A
HOH
157
6
HOH
HOH
657
A
HOH
158
6
HOH
HOH
658
A
HOH
159
6
HOH
HOH
659
A
HOH
160
6
HOH
HOH
660
A
HOH
161
6
HOH
HOH
661
A
HOH
162
6
HOH
HOH
662
A
HOH
163
6
HOH
HOH
663
A
HOH
164
6
HOH
HOH
664
A
HOH
165
6
HOH
HOH
665
A
HOH
166
6
HOH
HOH
666
A
HOH
167
6
HOH
HOH
667
A
HOH
168
6
HOH
HOH
668
A
HOH
169
6
HOH
HOH
669
A
HOH
170
6
HOH
HOH
670
A
HOH
171
6
HOH
HOH
671
A
HOH
172
6
HOH
HOH
672
A
HOH
173
6
HOH
HOH
673
A
HOH
174
6
HOH
HOH
674
A
HOH
175
6
HOH
HOH
675
A
HOH
176
6
HOH
HOH
676
A
HOH
177
6
HOH
HOH
677
A
HOH
178
6
HOH
HOH
678
A
HOH
179
6
HOH
HOH
679
A
HOH
180
6
HOH
HOH
680
A
HOH
181
6
HOH
HOH
681
A
HOH
182
6
HOH
HOH
682
A
HOH
183
6
HOH
HOH
683
A
HOH
184
6
HOH
HOH
684
A
HOH
185
6
HOH
HOH
685
A
HOH
186
6
HOH
HOH
686
A
HOH
187
6
HOH
HOH
687
A
HOH
188
6
HOH
HOH
688
A
HOH
189
6
HOH
HOH
689
A
HOH
190
6
HOH
HOH
690
A
HOH
191
6
HOH
HOH
691
A
HOH
192
6
HOH
HOH
692
A
HOH
193
6
HOH
HOH
693
A
HOH
194
6
HOH
HOH
694
A
HOH
195
6
HOH
HOH
695
A
HOH
196
6
HOH
HOH
696
A
HOH
197
6
HOH
HOH
697
A
HOH
198
6
HOH
HOH
698
A
HOH
199
6
HOH
HOH
699
A
HOH
200
6
HOH
HOH
700
A
HOH
201
6
HOH
HOH
701
A
HOH
202
6
HOH
HOH
702
A
HOH
203
6
HOH
HOH
703
A
HOH
204
6
HOH
HOH
704
A
HOH
205
6
HOH
HOH
705
A
HOH
206
6
HOH
HOH
706
A
HOH
207
6
HOH
HOH
707
A
HOH
208
6
HOH
HOH
708
A
HOH
209
6
HOH
HOH
709
A
HOH
210
6
HOH
HOH
710
A
HOH
211
6
HOH
HOH
711
A
HOH
212
6
HOH
HOH
712
A
HOH
213
6
HOH
HOH
713
A
HOH
214
6
HOH
HOH
714
A
HOH
215
6
HOH
HOH
715
A
HOH
216
6
HOH
HOH
716
A
HOH
217
6
HOH
HOH
717
A
HOH
218
6
HOH
HOH
718
A
HOH
219
6
HOH
HOH
719
A
HOH
220
6
HOH
HOH
720
A
HOH
221
6
HOH
HOH
721
A
HOH
222
6
HOH
HOH
722
A
HOH
223
6
HOH
HOH
723
A
HOH
224
6
HOH
HOH
724
A
HOH
225
6
HOH
HOH
725
A
HOH
226
6
HOH
HOH
726
A
HOH
227
6
HOH
HOH
727
A
HOH
228
6
HOH
HOH
728
A
HOH
229
6
HOH
HOH
729
A
HOH
230
6
HOH
HOH
730
A
HOH
231
6
HOH
HOH
731
A
HOH
232
6
HOH
HOH
732
A
HOH
233
6
HOH
HOH
733
A
HOH
234
6
HOH
HOH
734
A
HOH
235
6
HOH
HOH
735
A
HOH
236
6
HOH
HOH
736
A
HOH
237
6
HOH
HOH
737
A
HOH
238
6
HOH
HOH
738
A
HOH
239
6
HOH
HOH
739
A
HOH
240
6
HOH
HOH
740
A
HOH
241
6
HOH
HOH
741
A
HOH
242
6
HOH
HOH
742
A
HOH
243
6
HOH
HOH
743
A
HOH
244
6
HOH
HOH
744
A
HOH
245
6
HOH
HOH
745
A
HOH
246
6
HOH
HOH
746
A
HOH
247
6
HOH
HOH
747
A
HOH
248
6
HOH
HOH
748
A
HOH
249
6
HOH
HOH
749
A
HOH
250
6
HOH
HOH
750
A
HOH
251
6
HOH
HOH
751
A
HOH
252
6
HOH
HOH
752
A
HOH
253
6
HOH
HOH
753
A
HOH
254
6
HOH
HOH
754
A
HOH
255
6
HOH
HOH
755
A
HOH
256
6
HOH
HOH
756
A
HOH
257
6
HOH
HOH
757
A
HOH
258
6
HOH
HOH
758
A
HOH
259
6
HOH
HOH
759
A
HOH
260
6
HOH
HOH
760
A
HOH
261
6
HOH
HOH
761
A
HOH
262
6
HOH
HOH
762
A
HOH
263
6
HOH
HOH
763
A
HOH
264
6
HOH
HOH
764
A
HOH
265
6
HOH
HOH
765
A
HOH
266
6
HOH
HOH
766
A
HOH
267
6
HOH
HOH
767
A
HOH
268
6
HOH
HOH
768
A
HOH
269
6
HOH
HOH
769
A
HOH
270
6
HOH
HOH
770
A
HOH
271
6
HOH
HOH
771
A
HOH
272
6
HOH
HOH
772
A
HOH
273
6
HOH
HOH
773
A
HOH
274
6
HOH
HOH
774
A
HOH
275
6
HOH
HOH
775
A
HOH
276
6
HOH
HOH
776
A
HOH
277
6
HOH
HOH
777
A
HOH
278
6
HOH
HOH
778
A
HOH
279
6
HOH
HOH
779
A
HOH
280
6
HOH
HOH
780
A
HOH
281
6
HOH
HOH
781
A
HOH
282
6
HOH
HOH
782
A
GLY
-2
n
1
GLY
-2
A
SER
-1
n
2
SER
-1
A
HIS
0
n
3
HIS
0
A
MET
1
n
4
MET
1
A
ALA
2
n
5
ALA
2
A
LYS
3
n
6
LYS
3
A
THR
4
n
7
THR
4
A
VAL
5
n
8
VAL
5
A
ILE
6
n
9
ILE
6
A
LEU
7
n
10
LEU
7
A
ASP
8
n
11
ASP
8
A
HIS
9
n
12
HIS
9
A
ASP
10
n
13
ASP
10
A
GLY
11
n
14
GLY
11
A
ASN
12
n
15
ASN
12
A
LYS
13
n
16
LYS
13
A
ASP
14
n
17
ASP
14
A
ASP
15
n
18
ASP
15
A
PHE
16
n
19
PHE
16
A
VAL
17
n
20
VAL
17
A
ALA
18
n
21
ALA
18
A
MET
19
n
22
MET
19
A
ILE
20
n
23
ILE
20
A
LEU
21
n
24
LEU
21
A
LEU
22
n
25
LEU
22
A
LEU
23
n
26
LEU
23
A
SER
24
n
27
SER
24
A
ASN
25
n
28
ASN
25
A
PRO
26
n
29
PRO
26
A
LYS
27
n
30
LYS
27
A
LYS
28
n
31
LYS
28
A
VAL
29
n
32
VAL
29
A
ASN
30
n
33
ASN
30
A
LEU
31
n
34
LEU
31
A
ILE
32
n
35
ILE
32
A
GLY
33
n
36
GLY
33
A
CYS
34
n
37
CYS
34
A
ILE
35
n
38
ILE
35
A
CYS
36
n
39
CYS
36
A
THR
37
n
40
THR
37
A
ASP
38
n
41
ASP
38
A
ALA
39
n
42
ALA
39
A
ASP
40
n
43
ASP
40
A
CYS
41
n
44
CYS
41
A
PHE
42
n
45
PHE
42
A
VAL
43
n
46
VAL
43
A
GLU
44
n
47
GLU
44
A
ASN
45
n
48
ASN
45
A
GLY
46
n
49
GLY
46
A
PHE
47
n
50
PHE
47
A
ASP
48
n
51
ASP
48
A
VAL
49
n
52
VAL
49
A
THR
50
n
53
THR
50
A
GLY
51
n
54
GLY
51
A
LYS
52
n
55
LYS
52
A
ILE
53
n
56
ILE
53
A
MET
54
n
57
MET
54
A
CYS
55
n
58
CYS
55
A
ALA
56
n
59
ALA
56
A
MET
57
n
60
MET
57
A
HIS
58
n
61
HIS
58
A
ARG
59
n
62
ARG
59
A
LEU
60
n
63
LEU
60
A
ILE
61
n
64
ILE
61
A
LYS
62
n
65
LYS
62
A
THR
63
n
66
THR
63
A
PRO
64
n
67
PRO
64
A
LEU
65
n
68
LEU
65
A
PHE
66
n
69
PHE
66
A
PRO
67
n
70
PRO
67
A
ILE
68
n
71
ILE
68
A
GLY
69
n
72
GLY
69
A
LYS
70
n
73
LYS
70
A
SER
71
n
74
SER
71
A
THR
72
n
75
THR
72
A
ALA
73
n
76
ALA
73
A
THR
74
n
77
THR
74
A
ALA
75
n
78
ALA
75
A
VAL
76
n
79
VAL
76
A
ASN
77
n
80
ASN
77
A
ALA
78
n
81
ALA
78
A
PHE
79
n
82
PHE
79
A
PRO
80
n
83
PRO
80
A
THR
81
n
84
THR
81
A
GLU
82
n
85
GLU
82
A
TRP
83
n
86
TRP
83
A
ARG
84
n
87
ARG
84
A
PHE
85
n
88
PHE
85
A
SER
86
n
89
SER
86
A
ALA
87
n
90
ALA
87
A
LYS
88
n
91
LYS
88
A
ASN
89
n
92
ASN
89
A
LEU
90
n
93
LEU
90
A
ASP
91
n
94
ASP
91
A
ASP
92
n
95
ASP
92
A
MET
93
n
96
MET
93
A
PRO
94
n
97
PRO
94
A
PHE
95
n
98
PHE
95
A
LEU
96
n
99
LEU
96
A
ASN
97
n
100
ASN
97
A
ILE
98
n
101
ILE
98
A
VAL
99
n
102
VAL
99
A
GLU
100
n
103
GLU
100
A
ASP
101
n
104
ASP
101
A
VAL
102
n
105
VAL
102
A
ALA
103
n
106
ALA
103
A
LEU
104
n
107
LEU
104
A
TRP
105
n
108
TRP
105
A
GLU
106
n
109
GLU
106
A
LYS
107
n
110
LYS
107
A
LEU
108
n
111
LEU
108
A
LYS
109
n
112
LYS
109
A
PRO
110
n
113
PRO
110
A
GLU
111
n
114
GLU
111
A
ASN
112
n
115
ASN
112
A
GLU
113
n
116
GLU
113
A
ALA
114
n
117
ALA
114
A
HIS
115
n
118
HIS
115
A
ASN
116
n
119
ASN
116
A
GLY
117
n
120
GLY
117
A
GLN
118
n
121
GLN
118
A
GLN
119
n
122
GLN
119
A
LEU
120
n
123
LEU
120
A
LEU
121
n
124
LEU
121
A
ALA
122
n
125
ALA
122
A
ASP
123
n
126
ASP
123
A
LEU
124
n
127
LEU
124
A
VAL
125
n
128
VAL
125
A
MET
126
n
129
MET
126
A
LYS
127
n
130
LYS
127
A
SER
128
n
131
SER
128
A
LYS
129
n
132
LYS
129
A
GLU
130
n
133
GLU
130
A
LYS
131
n
134
LYS
131
A
VAL
132
n
135
VAL
132
A
THR
133
n
136
THR
133
A
VAL
134
n
137
VAL
134
A
CYS
135
n
138
CYS
135
A
VAL
136
n
139
VAL
136
A
THR
137
n
140
THR
137
A
GLY
138
n
141
GLY
138
A
PRO
139
n
142
PRO
139
A
LEU
140
n
143
LEU
140
A
SER
141
n
144
SER
141
A
ASN
142
n
145
ASN
142
A
MET
143
n
146
MET
143
A
ALA
144
n
147
ALA
144
A
TRP
145
n
148
TRP
145
A
CYS
146
n
149
CYS
146
A
ILE
147
n
150
ILE
147
A
GLU
148
n
151
GLU
148
A
LYS
149
n
152
LYS
149
A
TYR
150
n
153
TYR
150
A
GLY
151
n
154
GLY
151
A
GLU
152
n
155
GLU
152
A
ALA
153
n
156
ALA
153
A
PHE
154
n
157
PHE
154
A
THR
155
n
158
THR
155
A
SER
156
n
159
SER
156
A
LYS
157
n
160
LYS
157
A
VAL
158
n
161
VAL
158
A
GLU
159
n
162
GLU
159
A
GLU
160
n
163
GLU
160
A
CYS
161
n
164
CYS
161
A
VAL
162
n
165
VAL
162
A
ILE
163
n
166
ILE
163
A
MET
164
n
167
MET
164
A
GLY
165
n
168
GLY
165
A
GLY
166
n
169
GLY
166
A
ALA
167
n
170
ALA
167
A
VAL
168
n
171
VAL
168
A
ASP
169
n
172
ASP
169
A
VAL
170
n
173
VAL
170
A
GLY
171
n
174
GLY
171
A
GLY
172
n
175
GLY
172
A
ASN
173
n
176
ASN
173
A
VAL
174
n
177
VAL
174
A
PHE
175
n
178
PHE
175
A
LEU
176
n
179
LEU
176
A
PRO
177
n
180
PRO
177
A
THR
178
n
181
THR
178
A
THR
179
n
182
THR
179
A
ASP
180
n
183
ASP
180
A
GLY
181
n
184
GLY
181
A
SER
182
n
185
SER
182
A
ALA
183
n
186
ALA
183
A
GLU
184
n
187
GLU
184
A
TRP
185
n
188
TRP
185
A
ASN
186
n
189
ASN
186
A
ILE
187
n
190
ILE
187
A
TYR
188
n
191
TYR
188
A
TRP
189
n
192
TRP
189
A
ASP
190
n
193
ASP
190
A
PRO
191
n
194
PRO
191
A
PRO
192
n
195
PRO
192
A
ALA
193
n
196
ALA
193
A
ALA
194
n
197
ALA
194
A
LYS
195
n
198
LYS
195
A
LYS
196
n
199
LYS
196
A
VAL
197
n
200
VAL
197
A
LEU
198
n
201
LEU
198
A
CYS
199
n
202
CYS
199
A
CYS
200
n
203
CYS
200
A
PRO
201
n
204
PRO
201
A
ASN
202
n
205
ASN
202
A
ILE
203
n
206
ILE
203
A
ARG
204
n
207
ARG
204
A
CYS
205
n
208
CYS
205
A
VAL
206
n
209
VAL
206
A
LEU
207
n
210
LEU
207
A
PHE
208
n
211
PHE
208
A
SER
209
n
212
SER
209
A
LEU
210
n
213
LEU
210
A
ASP
211
n
214
ASP
211
A
ALA
212
n
215
ALA
212
A
THR
213
n
216
THR
213
A
ASN
214
n
217
ASN
214
A
THR
215
n
218
THR
215
A
VAL
216
n
219
VAL
216
A
PRO
217
n
220
PRO
217
A
VAL
218
n
221
VAL
218
A
ARG
219
n
222
ARG
219
A
SER
220
n
223
SER
220
A
VAL
221
n
224
VAL
221
A
ASP
222
n
225
ASP
222
A
VAL
223
n
226
VAL
223
A
LYS
224
n
227
LYS
224
A
GLY
225
n
228
GLY
225
A
PHE
226
n
229
PHE
226
A
GLY
227
n
230
GLY
227
A
ALA
228
n
231
ALA
228
A
GLN
229
n
232
GLN
229
A
ASN
230
n
233
ASN
230
A
GLN
231
n
234
GLN
231
A
TYR
232
n
235
TYR
232
A
LEU
233
n
236
LEU
233
A
LEU
234
n
237
LEU
234
A
SER
235
n
238
SER
235
A
GLN
236
n
239
GLN
236
A
MET
237
n
240
MET
237
A
VAL
238
n
241
VAL
238
A
GLY
239
n
242
GLY
239
A
THR
240
n
243
THR
240
A
MET
241
n
244
MET
241
A
TRP
242
n
245
TRP
242
A
ALA
243
n
246
ALA
243
A
MET
244
n
247
MET
244
A
SER
245
n
248
SER
245
A
THR
246
n
249
THR
246
A
HIS
247
n
250
HIS
247
A
GLU
248
n
251
GLU
248
A
GLU
249
n
252
GLU
249
A
ILE
250
n
253
ILE
250
A
LEU
251
n
254
LEU
251
A
ARG
252
n
255
ARG
252
A
ASP
253
n
256
ASP
253
A
GLY
254
n
257
GLY
254
A
ASP
255
n
258
ASP
255
A
ALA
256
n
259
ALA
256
A
TYR
257
n
260
TYR
257
A
TYR
258
n
261
TYR
258
A
ALA
259
n
262
ALA
259
A
TRP
260
n
263
TRP
260
A
ASP
261
n
264
ASP
261
A
ALA
262
n
265
ALA
262
A
LEU
263
n
266
LEU
263
A
THR
264
n
267
THR
264
A
ALA
265
n
268
ALA
265
A
ALA
266
n
269
ALA
266
A
TYR
267
n
270
TYR
267
A
ILE
268
n
271
ILE
268
A
LEU
269
n
272
LEU
269
A
GLU
270
n
273
GLU
270
A
PRO
271
n
274
PRO
271
A
THR
272
n
275
THR
272
A
ILE
273
n
276
ILE
273
A
ALA
274
n
277
ALA
274
A
THR
275
n
278
THR
275
A
LEU
276
n
279
LEU
276
A
GLU
277
n
280
GLU
277
A
PRO
278
n
281
PRO
278
A
VAL
279
n
282
VAL
279
A
ALA
280
n
283
ALA
280
A
LEU
281
n
284
LEU
281
A
ASP
282
n
285
ASP
282
A
VAL
283
n
286
VAL
283
A
ASP
284
n
287
ASP
284
A
VAL
285
n
288
VAL
285
A
SER
286
n
289
SER
286
A
LYS
287
n
290
LYS
287
A
GLY
288
n
291
GLY
288
A
LYS
289
n
292
LYS
289
A
SER
290
n
293
SER
290
A
GLU
291
n
294
GLU
291
A
GLY
292
n
295
GLY
292
A
ARG
293
n
296
ARG
293
A
THR
294
n
297
THR
294
A
PRO
295
n
298
PRO
295
A
ARG
296
n
299
ARG
296
A
ALA
297
n
300
ALA
297
A
n
301
298
A
n
302
299
A
n
303
300
A
n
304
301
A
n
305
302
A
PRO
303
n
306
PRO
303
A
CYS
304
n
307
CYS
304
A
VAL
305
n
308
VAL
305
A
HIS
306
n
309
HIS
306
A
VAL
307
n
310
VAL
307
A
ALA
308
n
311
ALA
308
A
ARG
309
n
312
ARG
309
A
ASN
310
n
313
ASN
310
A
PRO
311
n
314
PRO
311
A
SER
312
n
315
SER
312
A
LYS
313
n
316
LYS
313
A
GLN
314
n
317
GLN
314
A
MET
315
n
318
MET
315
A
PHE
316
n
319
PHE
316
A
HIS
317
n
320
HIS
317
A
ASP
318
n
321
ASP
318
A
LEU
319
n
322
LEU
319
A
VAL
320
n
323
VAL
320
A
PHE
321
n
324
PHE
321
A
ALA
322
n
325
ALA
322
A
SER
323
n
326
SER
323
A
THR
324
n
327
THR
324
A
ARG
325
n
328
ARG
325
A
VAL
326
n
329
VAL
326
A
CYS
327
n
330
CYS
327
A
author_and_software_defined_assembly
PISA
2
dimeric
3080
-12
22260
A
GLY
-2
A
N
GLY
1
1_555
A
NI
404
E
NI
NI
1_555
A
SER
-1
A
N
SER
2
1_555
83.9
A
GLY
-2
A
N
GLY
1
1_555
A
NI
404
E
NI
NI
1_555
A
HIS
0
A
ND1
HIS
3
1_555
97.9
A
SER
-1
A
N
SER
2
1_555
A
NI
404
E
NI
NI
1_555
A
HIS
0
A
ND1
HIS
3
1_555
174.9
A
GLY
-2
A
N
GLY
1
1_555
A
NI
404
E
NI
NI
1_555
A
HIS
0
A
N
HIS
3
1_555
166.5
A
SER
-1
A
N
SER
2
1_555
A
NI
404
E
NI
NI
1_555
A
HIS
0
A
N
HIS
3
1_555
82.8
A
HIS
0
A
ND1
HIS
3
1_555
A
NI
404
E
NI
NI
1_555
A
HIS
0
A
N
HIS
3
1_555
95.5
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
15
A
OD2
ASP
18
1_555
80.6
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
15
A
OD1
ASP
18
1_555
73.5
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
15
A
OD1
ASP
18
1_555
52.6
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
THR
137
A
O
THR
140
1_555
93.0
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
THR
137
A
O
THR
140
1_555
135.4
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
THR
137
A
O
THR
140
1_555
83.1
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
261
A
OD2
ASP
264
1_555
145.4
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
261
A
OD2
ASP
264
1_555
76.1
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
261
A
OD2
ASP
264
1_555
72.0
A
THR
137
A
O
THR
140
1_555
A
CA
402
C
CA
CA
1_555
A
ASP
261
A
OD2
ASP
264
1_555
86.0
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O2'
AGV
1_555
131.2
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O2'
AGV
1_555
75.8
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O2'
AGV
1_555
119.7
A
THR
137
A
O
THR
140
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O2'
AGV
1_555
133.0
A
ASP
261
A
OD2
ASP
264
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O2'
AGV
1_555
66.6
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
138.4
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
136.9
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
139.0
A
THR
137
A
O
THR
140
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
72.2
A
ASP
261
A
OD2
ASP
264
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
74.0
A
AGV
401
B
O2'
AGV
1_555
A
CA
402
C
CA
CA
1_555
A
AGV
401
B
O3'
AGV
1_555
64.1
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
72.1
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
122.5
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
145.4
A
THR
137
A
O
THR
140
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
96.4
A
ASP
261
A
OD2
ASP
264
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
142.5
A
AGV
401
B
O2'
AGV
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
85.7
A
AGV
401
B
O3'
AGV
1_555
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
71.3
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
O1
TRS
1_555
92.3
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
N
TRS
1_555
172.2
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
N
TRS
1_555
85.3
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
O2
TRS
1_555
91.7
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
O2
TRS
1_555
85.2
A
TRS
405
A
F
N
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
A
F
O2
TRS
1_555
80.7
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O3
TRS
1_555
158.8
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O3
TRS
1_555
83.0
A
TRS
405
A
F
N
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O3
TRS
1_555
28.1
A
TRS
405
A
F
O2
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O3
TRS
1_555
108.3
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O1
TRS
1_555
91.7
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O1
TRS
1_555
0.8
A
TRS
405
A
F
N
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O1
TRS
1_555
86.0
A
TRS
405
A
F
O2
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O1
TRS
1_555
85.8
A
TRS
405
B
F
O3
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O1
TRS
1_555
83.3
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
94.7
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
67.8
A
TRS
405
A
F
N
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
77.5
A
TRS
405
A
F
O2
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
17.6
A
TRS
405
B
F
O3
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
102.4
A
TRS
405
B
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
TRS
405
B
F
O2
TRS
1_555
68.4
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
91.2
A
TRS
405
A
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
173.1
A
TRS
405
A
F
N
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
90.4
A
TRS
405
A
F
O2
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
88.8
A
TRS
405
B
F
O3
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
95.8
A
TRS
405
B
F
O1
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
173.9
A
TRS
405
B
F
O2
TRS
1_555
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
106.1
A
HIS
317
A
NE2
HIS
320
1_555
A
NI
407
H
NI
NI
1_555
A
HOH
656
I
O
HOH
1_555
94.4
A
HIS
317
A
NE2
HIS
320
1_555
A
NI
407
H
NI
NI
1_555
A
HOH
701
I
O
HOH
1_555
105.9
A
HOH
656
I
O
HOH
1_555
A
NI
407
H
NI
NI
1_555
A
HOH
701
I
O
HOH
1_555
149.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
66.6400000000
A
O
GLY
69
A
O
GLY
72
A
N
CYS
36
A
N
CYS
39
A
O
ASN
30
A
O
ASN
33
A
N
LYS
3
A
N
LYS
6
A
N
ASP
8
A
N
ASP
11
A
O
CYS
135
A
O
CYS
138
A
N
VAL
136
A
N
VAL
139
A
O
MET
164
A
O
MET
167
A
N
ILE
163
A
N
ILE
166
A
O
PHE
208
A
O
PHE
211
A
N
LEU
207
A
N
LEU
210
A
O
ALA
308
A
O
ALA
311
A
O
ARG
309
A
O
ARG
312
A
N
THR
275
A
N
THR
278
A
N
ALA
280
A
N
ALA
283
A
O
ALA
297
A
O
ALA
300
1
A
SER
298
A
SER
301
1
Y
1
A
GLY
299
A
GLY
302
1
Y
1
A
GLU
300
A
GLU
303
1
Y
1
A
GLY
301
A
GLY
304
1
Y
1
A
LYS
302
A
LYS
305
1
Y
1
-3.13
0.50
120.30
117.17
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
293
293
293
B
B
B
N
1
A
A
CD
OE1
GLU
GLU
82
82
0.080
0.011
1.252
1.332
N
1
A
A
CG
CD1
TRP
TRP
242
242
0.093
0.014
1.363
1.456
N
1
A
SER
-1
169.23
-12.47
1
A
ALA
39
-105.33
-90.76
1
A
ASP
40
-85.38
31.59
1
A
VAL
168
-97.79
-60.27
1
A
ASP
190
-153.76
82.49
1
A
THR
294
-118.93
67.71
52.470
14.8256
6.240
0.0000
0.0000
0.0000
0.0400
0.0000
-0.0400
0.9750
0.9710
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.1467
0.1259
0.1269
1.28
133.3
3944
78467
78467
5.0000
95.8000
0.1482
0.1262
1.000
0.000
0.9388
0.9900
0.0200
0.0405
0.0381
RANDOM
1
Individual anisotropic
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0400
0.0380
0.8000
0.8000
1.4000
1KIC
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.28
133.3
282
2811
33
0
2496
0.019
0.022
2646
0.001
0.020
1767
1.744
1.971
3607
1.037
3.000
4351
6.177
5.000
339
36.482
24.952
105
12.971
15.000
450
10.523
15.000
10
0.121
0.200
411
0.005
0.021
2911
0.001
0.020
500
2.308
2.500
1659
1.486
2.500
662
3.106
3.000
2693
4.023
4.000
987
5.497
5.500
908
1.990
3.000
4413
11.817
3.000
287
4.949
3.000
4349
0.2100
0.1770
1.3180
161
3303
3464
20
57.6900
17.811
1.280
133.3
4I71
78467
78467
-3.000
0.048
1
16.640
3.4
95.800
0.478
0.264
1.280
1.320
2.840
5578
6007
3472
3472
0.353
1
1.6
57.800
0.356
0.228
1.320
1.350
4.160
13938
5840
5484
0.286
1
93.900
0.282
0.195
1.350
1.390
5.370
16641
5701
5678
0.239
1
99.600
0.222
0.158
1.390
1.440
6.470
16169
5514
5499
0.194
1
99.700
0.180
0.129
1.440
1.480
7.820
15830
5376
5362
0.158
1
99.700
0.132
0.099
1.480
1.540
9.830
15318
5205
5193
0.121
1
99.800
0.108
0.081
1.540
1.590
11.700
14720
4980
4964
0.100
1
99.700
0.088
0.068
1.590
1.660
13.780
14245
4818
4790
0.083
1
99.400
0.074
0.058
1.660
1.730
15.680
13781
4653
4627
0.071
1
99.400
0.058
0.051
1.730
1.820
17.930
13220
4448
4416
0.062
1
99.300
0.048
0.043
1.820
1.910
20.260
12415
4200
4151
0.053
1
98.800
0.039
0.037
1.910
2.030
23.130
11871
4023
3971
0.046
1
98.700
0.033
0.035
2.030
2.170
25.450
11027
3746
3676
0.042
1
98.100
0.031
0.036
2.170
2.340
27.030
10672
3545
3460
0.043
1
97.600
0.035
0.061
2.340
2.570
30.690
18322
3260
3247
0.067
1
99.600
0.032
0.055
2.570
2.870
33.410
18686
2945
2937
0.060
1
99.700
0.028
0.046
2.870
3.320
35.530
16374
2620
2610
0.051
1
99.600
0.023
0.042
3.320
4.060
38.440
13974
2243
2229
0.046
1
99.400
0.023
0.040
4.060
5.740
37.780
10021
1737
1708
0.044
1
98.300
0.023
0.038
5.740
133.0
34.860
5102
1039
993
0.043
1
95.600
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
DNA
data reduction
XDS
Crystal structure of the Trypanosoma brucei Inosine-Adenosine-Guanosine nucleoside hydrolase in complex with a trypanocidal compound
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
4
N
N
4
N
N
6
N
N
A
ASN
12
A
ASN
15
HELX_P
A
SER
24
A
SER
27
1
1
13
A
PHE
42
A
PHE
45
HELX_P
A
LYS
62
A
LYS
65
1
2
21
A
PRO
80
A
PRO
83
HELX_P
A
PHE
85
A
PHE
88
1
3
6
A
PHE
85
A
PHE
88
HELX_P
A
ASP
92
A
ASP
95
1
4
8
A
MET
93
A
MET
96
HELX_P
A
ASN
97
A
ASN
100
5
5
5
A
ILE
98
A
ILE
101
HELX_P
A
ALA
114
A
ALA
117
1
6
17
A
ASN
116
A
ASN
119
HELX_P
A
SER
128
A
SER
131
1
7
13
A
LEU
140
A
LEU
143
HELX_P
A
GLY
151
A
GLY
154
1
8
12
A
GLY
151
A
GLY
154
HELX_P
A
SER
156
A
SER
159
1
9
6
A
GLU
184
A
GLU
187
HELX_P
A
ASP
190
A
ASP
193
1
10
7
A
ASP
190
A
ASP
193
HELX_P
A
CYS
199
A
CYS
202
1
11
10
A
SER
209
A
SER
212
HELX_P
A
ASN
214
A
ASN
217
1
12
6
A
ARG
219
A
ARG
222
HELX_P
A
LYS
224
A
LYS
227
1
13
6
A
GLY
225
A
GLY
228
HELX_P
A
ASN
230
A
ASN
233
5
14
6
A
TYR
232
A
TYR
235
HELX_P
A
MET
244
A
MET
247
1
15
13
A
HIS
247
A
HIS
250
HELX_P
A
ARG
252
A
ARG
255
1
16
6
A
ALA
259
A
ALA
262
HELX_P
A
GLU
270
A
GLU
273
1
17
12
A
PRO
271
A
PRO
274
HELX_P
A
ALA
274
A
ALA
277
5
18
4
A
SER
312
A
SER
315
HELX_P
A
THR
324
A
THR
327
1
19
13
disulf
2.072
A
CYS
199
A
SG
CYS
202
1_555
A
CYS
304
A
SG
CYS
307
1_555
metalc
1.971
A
GLY
-2
A
N
GLY
1
1_555
A
NI
404
E
NI
NI
1_555
metalc
1.985
A
SER
-1
A
N
SER
2
1_555
A
NI
404
E
NI
NI
1_555
metalc
1.865
A
HIS
0
A
ND1
HIS
3
1_555
A
NI
404
E
NI
NI
1_555
metalc
1.990
A
HIS
0
A
N
HIS
3
1_555
A
NI
404
E
NI
NI
1_555
metalc
2.349
A
ASP
10
A
OD1
ASP
13
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.472
A
ASP
15
A
OD2
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.537
A
ASP
15
A
OD1
ASP
18
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.045
A
HIS
58
A
NE2
HIS
61
1_555
A
NI
403
D
NI
NI
1_555
metalc
2.046
A
HIS
115
A
NE2
HIS
118
1_555
A
NI
406
G
NI
NI
1_555
metalc
2.322
A
THR
137
A
O
THR
140
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.502
A
ASP
261
A
OD2
ASP
264
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.052
A
HIS
317
A
NE2
HIS
320
1_555
A
NI
407
H
NI
NI
1_555
metalc
2.425
A
AGV
401
B
O2'
AGV
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.547
A
AGV
401
B
O3'
AGV
1_555
A
CA
402
C
CA
CA
1_555
metalc
2.526
A
CA
402
C
CA
CA
1_555
A
HOH
504
I
O
HOH
1_555
metalc
1.992
A
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
O1
TRS
1_555
metalc
2.078
A
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
N
TRS
1_555
metalc
2.079
A
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
O2
TRS
1_555
metalc
2.263
B
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
O3
TRS
1_555
metalc
2.287
B
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
O1
TRS
1_555
metalc
2.355
B
A
NI
403
D
NI
NI
1_555
A
TRS
405
F
O2
TRS
1_555
metalc
2.060
A
NI
403
D
NI
NI
1_555
A
HOH
501
I
O
HOH
1_555
metalc
2.219
A
NI
407
H
NI
NI
1_555
A
HOH
656
I
O
HOH
1_555
metalc
2.171
A
NI
407
H
NI
NI
1_555
A
HOH
701
I
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
nucleoside hydrolase, open (alpha, beta) structure, NH fold, HYDROLASE-HYDROLASE INHIBITOR complex
Q57ZL6_TRYB2
UNP
1
1
Q57ZL6
MAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCICTDADCFVENGFDVTGKIMCAMHRLIKTPLFPIGKSTATAVNAFP
TEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKEKVTVCVTGPLSNMAWCIEKYGEAFTSKVEE
CVIMGGAVDVGGNVFLPTTDGSAEWNIYWDPPAAKKVLCCPNIRCVLFSLDATNTVPVRSVDVKGFGAQNQYLLSQMVGT
MWAMSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDVSKGKSEGRTPRASGEGKPCVHVARNPSKQMFHDLV
FASTRVC
1
327
4I71
1
327
Q57ZL6
A
1
4
330
1
expression tag
GLY
-2
4I71
A
Q57ZL6
UNP
1
1
expression tag
SER
-1
4I71
A
Q57ZL6
UNP
2
1
expression tag
HIS
0
4I71
A
Q57ZL6
UNP
3
9
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
ILE
68
A
ILE
71
A
LYS
70
A
LYS
73
A
VAL
29
A
VAL
32
A
CYS
36
A
CYS
39
A
LYS
3
A
LYS
6
A
HIS
9
A
HIS
12
A
VAL
132
A
VAL
135
A
VAL
136
A
VAL
139
A
VAL
158
A
VAL
161
A
MET
164
A
MET
167
A
CYS
205
A
CYS
208
A
PHE
208
A
PHE
211
A
CYS
304
A
CYS
307
A
ARG
309
A
ARG
312
A
THR
275
A
THR
278
A
LEU
281
A
LEU
284
A
ARG
296
A
ARG
299
A
ALA
297
A
ALA
300
BINDING SITE FOR RESIDUE AGV A 401
A
AGV
401
Software
19
BINDING SITE FOR RESIDUE CA A 402
A
CA
402
Software
6
BINDING SITE FOR RESIDUE NI A 403
A
NI
403
Software
4
BINDING SITE FOR RESIDUE NI A 404
A
NI
404
Software
3
BINDING SITE FOR RESIDUE TRS A 405
A
TRS
405
Software
12
BINDING SITE FOR RESIDUE NI A 406
A
NI
406
Software
1
BINDING SITE FOR RESIDUE NI A 407
A
NI
407
Software
3
A
ASN
12
A
ASN
15
19
1_555
A
ASP
14
A
ASP
17
19
1_555
A
ASP
15
A
ASP
18
19
1_555
A
ASP
40
A
ASP
43
19
1_555
A
PHE
79
A
PHE
82
19
1_555
A
TRP
83
A
TRP
86
19
1_555
A
THR
137
A
THR
140
19
1_555
A
ASN
173
A
ASN
176
19
1_555
A
GLU
184
A
GLU
187
19
1_555
A
ASN
186
A
ASN
189
19
1_555
A
GLU
248
A
GLU
251
19
1_555
A
ARG
252
A
ARG
255
19
1_555
A
TYR
257
A
TYR
260
19
1_555
A
TRP
260
A
TRP
263
19
1_555
A
ASP
261
A
ASP
264
19
1_555
A
CA
402
C
CA
19
1_555
A
HOH
504
I
HOH
19
1_555
A
HOH
535
I
HOH
19
1_555
A
HOH
559
I
HOH
19
1_555
A
ASP
10
A
ASP
13
6
1_555
A
ASP
15
A
ASP
18
6
1_555
A
THR
137
A
THR
140
6
1_555
A
ASP
261
A
ASP
264
6
1_555
A
AGV
401
B
AGV
6
1_555
A
HOH
504
I
HOH
6
1_555
A
HIS
58
A
HIS
61
4
1_555
A
ASP
253
A
ASP
256
4
5_545
A
TRS
405
F
TRS
4
1_555
A
HOH
501
I
HOH
4
1_555
A
GLY
-2
A
GLY
1
3
1_555
A
SER
-1
A
SER
2
3
1_555
A
HIS
0
A
HIS
3
3
1_555
A
HIS
58
A
HIS
61
12
1_555
A
LEU
65
A
LEU
68
12
1_555
A
LEU
104
A
LEU
107
12
1_555
A
LYS
107
A
LYS
110
12
1_555
A
ILE
250
A
ILE
253
12
5_545
A
LEU
251
A
LEU
254
12
5_545
A
ASP
253
A
ASP
256
12
5_545
A
NI
403
D
NI
12
1_555
A
HOH
501
I
HOH
12
1_555
A
HOH
586
I
HOH
12
7_545
A
HOH
687
I
HOH
12
1_555
A
HOH
773
I
HOH
12
1_555
A
HIS
115
A
HIS
118
1
1_555
A
HIS
317
A
HIS
320
3
1_555
A
HOH
656
I
HOH
3
1_555
A
HOH
701
I
HOH
3
1_555
20
C 2 2 21