0.024938 0.002164 -0.000737 0.000000 0.019136 0.003249 0.000000 0.000000 0.018491 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 99.810 87.500 94.960 40.099 52.454 54.908 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution 10.2210/pdb4ib2/pdb pdb_00004ib2 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing) CCD 2010-06-09 MARMOSAIC 325 mm CCD single crystal Si(111) bent SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 BL11-1 SSRL 1.00000 SYNCHROTRON SSRL BEAMLINE BL11-1 27629.426 Putative Lipoprotein 2 man polymer 35.453 CHLORIDE ION 9 syn non-polymer 149.211 METHIONINE 2 syn non-polymer 92.094 GLYCEROL 4 syn non-polymer 18.015 water 342 nat water no no GEEKGSSEDAKTIKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGT HLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEENPYNVEIVE LEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEEKIQALVKALKSDEIKEYI EKTYDGAVIPFE GEEKGSSEDAKTIKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGT HLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEENPYNVEIVE LEAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEEKIQALVKALKSDEIKEYI EKTYDGAVIPFE A,B JCSG-416853 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 29149 sample ZP_02040096.1 411470 Ruminococcus gnavus 562 Escherichia Coli HK100 Plasmid SpeedET 1 2.05 40.02 VAPOR DIFFUSION, SITTING DROP 4.0 0.8M (NH4)2SO4, 0.1M Citrate pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Database references Derived calculations 1 0 2013-01-16 1 1 2017-11-15 1 2 2018-01-24 1 3 2023-02-01 _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-12-07 REL REL CL CHLORIDE ION MET METHIONINE GOL GLYCEROL HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 28-278 OF THE TARGET SEQUENCE. CL 304 2 CL CL 301 A CL 306 2 CL CL 302 A CL 307 2 CL CL 303 A CL 308 2 CL CL 304 A MET 300 3 MET MET 305 A GOL 311 4 GOL GOL 306 A GOL 312 4 GOL GOL 307 A CL 301 2 CL CL 301 B CL 302 2 CL CL 302 B CL 303 2 CL CL 303 B CL 305 2 CL CL 304 B CL 309 2 CL CL 305 B MET 300 3 MET MET 306 B GOL 310 4 GOL GOL 307 B GOL 313 4 GOL GOL 308 B HOH 314 5 HOH HOH 401 A HOH 316 5 HOH HOH 402 A HOH 318 5 HOH HOH 403 A HOH 319 5 HOH HOH 404 A HOH 321 5 HOH HOH 405 A HOH 322 5 HOH HOH 406 A HOH 326 5 HOH HOH 407 A HOH 327 5 HOH HOH 408 A HOH 329 5 HOH HOH 409 A HOH 330 5 HOH HOH 410 A HOH 331 5 HOH HOH 411 A HOH 333 5 HOH HOH 412 A HOH 334 5 HOH HOH 413 A HOH 335 5 HOH HOH 414 A HOH 336 5 HOH HOH 415 A HOH 338 5 HOH HOH 416 A HOH 339 5 HOH HOH 417 A HOH 340 5 HOH HOH 418 A HOH 341 5 HOH HOH 419 A HOH 342 5 HOH HOH 420 A HOH 343 5 HOH HOH 421 A HOH 344 5 HOH HOH 422 A HOH 345 5 HOH HOH 423 A HOH 348 5 HOH HOH 424 A HOH 349 5 HOH HOH 425 A HOH 350 5 HOH HOH 426 A HOH 351 5 HOH HOH 427 A HOH 352 5 HOH HOH 428 A HOH 353 5 HOH HOH 429 A HOH 354 5 HOH HOH 430 A HOH 355 5 HOH HOH 431 A HOH 356 5 HOH HOH 432 A HOH 358 5 HOH HOH 433 A HOH 359 5 HOH HOH 434 A HOH 360 5 HOH HOH 435 A HOH 363 5 HOH HOH 436 A HOH 364 5 HOH HOH 437 A HOH 365 5 HOH HOH 438 A HOH 366 5 HOH HOH 439 A HOH 368 5 HOH HOH 440 A HOH 369 5 HOH HOH 441 A HOH 370 5 HOH HOH 442 A HOH 372 5 HOH HOH 443 A HOH 373 5 HOH HOH 444 A HOH 375 5 HOH HOH 445 A HOH 378 5 HOH HOH 446 A HOH 379 5 HOH HOH 447 A HOH 380 5 HOH HOH 448 A HOH 382 5 HOH HOH 449 A HOH 383 5 HOH HOH 450 A HOH 385 5 HOH HOH 451 A HOH 386 5 HOH HOH 452 A HOH 388 5 HOH HOH 453 A HOH 389 5 HOH HOH 454 A HOH 390 5 HOH HOH 455 A HOH 394 5 HOH HOH 456 A HOH 395 5 HOH HOH 457 A HOH 396 5 HOH HOH 458 A HOH 397 5 HOH HOH 459 A HOH 398 5 HOH HOH 460 A HOH 399 5 HOH HOH 461 A HOH 402 5 HOH HOH 462 A HOH 403 5 HOH HOH 463 A HOH 404 5 HOH HOH 464 A HOH 405 5 HOH HOH 465 A HOH 406 5 HOH HOH 466 A HOH 408 5 HOH HOH 467 A HOH 409 5 HOH HOH 468 A HOH 410 5 HOH HOH 469 A HOH 413 5 HOH HOH 470 A HOH 414 5 HOH HOH 471 A HOH 415 5 HOH HOH 472 A HOH 416 5 HOH HOH 473 A HOH 419 5 HOH HOH 474 A HOH 421 5 HOH HOH 475 A HOH 422 5 HOH HOH 476 A HOH 423 5 HOH HOH 477 A HOH 424 5 HOH HOH 478 A HOH 425 5 HOH HOH 479 A HOH 426 5 HOH HOH 480 A HOH 427 5 HOH HOH 481 A HOH 428 5 HOH HOH 482 A HOH 429 5 HOH HOH 483 A HOH 430 5 HOH HOH 484 A HOH 431 5 HOH HOH 485 A HOH 432 5 HOH HOH 486 A HOH 433 5 HOH HOH 487 A HOH 434 5 HOH HOH 488 A HOH 435 5 HOH HOH 489 A HOH 436 5 HOH HOH 490 A HOH 437 5 HOH HOH 491 A HOH 438 5 HOH HOH 492 A HOH 439 5 HOH HOH 493 A HOH 440 5 HOH HOH 494 A HOH 441 5 HOH HOH 495 A HOH 442 5 HOH HOH 496 A HOH 443 5 HOH HOH 497 A HOH 444 5 HOH HOH 498 A HOH 445 5 HOH HOH 499 A HOH 446 5 HOH HOH 500 A HOH 447 5 HOH HOH 501 A HOH 448 5 HOH HOH 502 A HOH 457 5 HOH HOH 503 A HOH 461 5 HOH HOH 504 A HOH 462 5 HOH HOH 505 A HOH 463 5 HOH HOH 506 A HOH 496 5 HOH HOH 507 A HOH 497 5 HOH HOH 508 A HOH 513 5 HOH HOH 509 A HOH 514 5 HOH HOH 510 A HOH 515 5 HOH HOH 511 A HOH 516 5 HOH HOH 512 A HOH 517 5 HOH HOH 513 A HOH 518 5 HOH HOH 514 A HOH 519 5 HOH HOH 515 A HOH 520 5 HOH HOH 516 A HOH 521 5 HOH HOH 517 A HOH 522 5 HOH HOH 518 A HOH 526 5 HOH HOH 519 A HOH 527 5 HOH HOH 520 A HOH 528 5 HOH HOH 521 A HOH 532 5 HOH HOH 522 A HOH 533 5 HOH HOH 523 A HOH 534 5 HOH HOH 524 A HOH 535 5 HOH HOH 525 A HOH 536 5 HOH HOH 526 A HOH 537 5 HOH HOH 527 A HOH 538 5 HOH HOH 528 A HOH 539 5 HOH HOH 529 A HOH 540 5 HOH HOH 530 A HOH 542 5 HOH HOH 531 A HOH 543 5 HOH HOH 532 A HOH 544 5 HOH HOH 533 A HOH 545 5 HOH HOH 534 A HOH 546 5 HOH HOH 535 A HOH 547 5 HOH HOH 536 A HOH 548 5 HOH HOH 537 A HOH 549 5 HOH HOH 538 A HOH 550 5 HOH HOH 539 A HOH 551 5 HOH HOH 540 A HOH 552 5 HOH HOH 541 A HOH 553 5 HOH HOH 542 A HOH 554 5 HOH HOH 543 A HOH 555 5 HOH HOH 544 A HOH 556 5 HOH HOH 545 A HOH 557 5 HOH HOH 546 A HOH 558 5 HOH HOH 547 A HOH 559 5 HOH HOH 548 A HOH 560 5 HOH HOH 549 A HOH 561 5 HOH HOH 550 A HOH 562 5 HOH HOH 551 A HOH 564 5 HOH HOH 552 A HOH 565 5 HOH HOH 553 A HOH 566 5 HOH HOH 554 A HOH 567 5 HOH HOH 555 A HOH 568 5 HOH HOH 556 A HOH 569 5 HOH HOH 557 A HOH 570 5 HOH HOH 558 A HOH 571 5 HOH HOH 559 A HOH 572 5 HOH HOH 560 A HOH 573 5 HOH HOH 561 A HOH 574 5 HOH HOH 562 A HOH 575 5 HOH HOH 563 A HOH 576 5 HOH HOH 564 A HOH 577 5 HOH HOH 565 A HOH 578 5 HOH HOH 566 A HOH 579 5 HOH HOH 567 A HOH 580 5 HOH HOH 568 A HOH 581 5 HOH HOH 569 A HOH 582 5 HOH HOH 570 A HOH 583 5 HOH HOH 571 A HOH 584 5 HOH HOH 572 A HOH 585 5 HOH HOH 573 A HOH 586 5 HOH HOH 574 A HOH 587 5 HOH HOH 575 A HOH 588 5 HOH HOH 576 A HOH 589 5 HOH HOH 577 A HOH 593 5 HOH HOH 578 A HOH 594 5 HOH HOH 579 A HOH 595 5 HOH HOH 580 A HOH 596 5 HOH HOH 581 A HOH 597 5 HOH HOH 582 A HOH 598 5 HOH HOH 583 A HOH 599 5 HOH HOH 584 A HOH 600 5 HOH HOH 585 A HOH 601 5 HOH HOH 586 A HOH 602 5 HOH HOH 587 A HOH 603 5 HOH HOH 588 A HOH 604 5 HOH HOH 589 A HOH 605 5 HOH HOH 590 A HOH 606 5 HOH HOH 591 A HOH 607 5 HOH HOH 592 A HOH 608 5 HOH HOH 593 A HOH 609 5 HOH HOH 594 A HOH 610 5 HOH HOH 595 A HOH 611 5 HOH HOH 596 A HOH 612 5 HOH HOH 597 A HOH 613 5 HOH HOH 598 A HOH 614 5 HOH HOH 599 A HOH 615 5 HOH HOH 600 A HOH 618 5 HOH HOH 601 A HOH 619 5 HOH HOH 602 A HOH 620 5 HOH HOH 603 A HOH 622 5 HOH HOH 604 A HOH 647 5 HOH HOH 605 A HOH 648 5 HOH HOH 606 A HOH 651 5 HOH HOH 607 A HOH 652 5 HOH HOH 608 A HOH 505 5 HOH HOH 609 A HOH 507 5 HOH HOH 610 A HOH 508 5 HOH HOH 611 A HOH 315 5 HOH HOH 401 B HOH 317 5 HOH HOH 402 B HOH 320 5 HOH HOH 403 B HOH 323 5 HOH HOH 404 B HOH 324 5 HOH HOH 405 B HOH 325 5 HOH HOH 406 B HOH 328 5 HOH HOH 407 B HOH 332 5 HOH HOH 408 B HOH 337 5 HOH HOH 409 B HOH 346 5 HOH HOH 410 B HOH 347 5 HOH HOH 411 B HOH 357 5 HOH HOH 412 B HOH 361 5 HOH HOH 413 B HOH 362 5 HOH HOH 414 B HOH 367 5 HOH HOH 415 B HOH 371 5 HOH HOH 416 B HOH 374 5 HOH HOH 417 B HOH 376 5 HOH HOH 418 B HOH 377 5 HOH HOH 419 B HOH 381 5 HOH HOH 420 B HOH 384 5 HOH HOH 421 B HOH 387 5 HOH HOH 422 B HOH 391 5 HOH HOH 423 B HOH 392 5 HOH HOH 424 B HOH 393 5 HOH HOH 425 B HOH 400 5 HOH HOH 426 B HOH 401 5 HOH HOH 427 B HOH 407 5 HOH HOH 428 B HOH 411 5 HOH HOH 429 B HOH 412 5 HOH HOH 430 B HOH 417 5 HOH HOH 431 B HOH 418 5 HOH HOH 432 B HOH 420 5 HOH HOH 433 B HOH 449 5 HOH HOH 434 B HOH 450 5 HOH HOH 435 B HOH 451 5 HOH HOH 436 B HOH 452 5 HOH HOH 437 B HOH 453 5 HOH HOH 438 B HOH 454 5 HOH HOH 439 B HOH 455 5 HOH HOH 440 B HOH 456 5 HOH HOH 441 B HOH 458 5 HOH HOH 442 B HOH 459 5 HOH HOH 443 B HOH 460 5 HOH HOH 444 B HOH 464 5 HOH HOH 445 B HOH 465 5 HOH HOH 446 B HOH 466 5 HOH HOH 447 B HOH 467 5 HOH HOH 448 B HOH 468 5 HOH HOH 449 B HOH 469 5 HOH HOH 450 B HOH 470 5 HOH HOH 451 B HOH 471 5 HOH HOH 452 B HOH 472 5 HOH HOH 453 B HOH 473 5 HOH HOH 454 B HOH 474 5 HOH HOH 455 B HOH 475 5 HOH HOH 456 B HOH 476 5 HOH HOH 457 B HOH 477 5 HOH HOH 458 B HOH 478 5 HOH HOH 459 B HOH 479 5 HOH HOH 460 B HOH 480 5 HOH HOH 461 B HOH 481 5 HOH HOH 462 B HOH 482 5 HOH HOH 463 B HOH 483 5 HOH HOH 464 B HOH 484 5 HOH HOH 465 B HOH 485 5 HOH HOH 466 B HOH 486 5 HOH HOH 467 B HOH 487 5 HOH HOH 468 B HOH 488 5 HOH HOH 469 B HOH 489 5 HOH HOH 470 B HOH 490 5 HOH HOH 471 B HOH 491 5 HOH HOH 472 B HOH 492 5 HOH HOH 473 B HOH 493 5 HOH HOH 474 B HOH 494 5 HOH HOH 475 B HOH 495 5 HOH HOH 476 B HOH 498 5 HOH HOH 477 B HOH 499 5 HOH HOH 478 B HOH 500 5 HOH HOH 479 B HOH 501 5 HOH HOH 480 B HOH 502 5 HOH HOH 481 B HOH 503 5 HOH HOH 482 B HOH 504 5 HOH HOH 483 B HOH 506 5 HOH HOH 484 B HOH 509 5 HOH HOH 485 B HOH 510 5 HOH HOH 486 B HOH 511 5 HOH HOH 487 B HOH 512 5 HOH HOH 488 B HOH 523 5 HOH HOH 489 B HOH 524 5 HOH HOH 490 B HOH 525 5 HOH HOH 491 B HOH 529 5 HOH HOH 492 B HOH 530 5 HOH HOH 493 B HOH 531 5 HOH HOH 494 B HOH 541 5 HOH HOH 495 B HOH 563 5 HOH HOH 496 B HOH 590 5 HOH HOH 497 B HOH 591 5 HOH HOH 498 B HOH 592 5 HOH HOH 499 B HOH 616 5 HOH HOH 500 B HOH 617 5 HOH HOH 501 B HOH 621 5 HOH HOH 502 B HOH 623 5 HOH HOH 503 B HOH 624 5 HOH HOH 504 B HOH 625 5 HOH HOH 505 B HOH 626 5 HOH HOH 506 B HOH 627 5 HOH HOH 507 B HOH 628 5 HOH HOH 508 B HOH 629 5 HOH HOH 509 B HOH 630 5 HOH HOH 510 B HOH 631 5 HOH HOH 511 B HOH 632 5 HOH HOH 512 B HOH 633 5 HOH HOH 513 B HOH 634 5 HOH HOH 514 B HOH 635 5 HOH HOH 515 B HOH 636 5 HOH HOH 516 B HOH 637 5 HOH HOH 517 B HOH 638 5 HOH HOH 518 B HOH 639 5 HOH HOH 519 B HOH 640 5 HOH HOH 520 B HOH 641 5 HOH HOH 521 B HOH 642 5 HOH HOH 522 B HOH 643 5 HOH HOH 523 B HOH 644 5 HOH HOH 524 B HOH 645 5 HOH HOH 525 B HOH 646 5 HOH HOH 526 B HOH 649 5 HOH HOH 527 B HOH 650 5 HOH HOH 528 B HOH 653 5 HOH HOH 529 B HOH 654 5 HOH HOH 530 B HOH 655 5 HOH HOH 531 B n 1 0 A n 2 28 A n 3 29 A n 4 30 A n 5 31 A SER 32 n 6 SER 32 A SER 33 n 7 SER 33 A GLU 34 n 8 GLU 34 A ASP 35 n 9 ASP 35 A ALA 36 n 10 ALA 36 A LYS 37 n 11 LYS 37 A THR 38 n 12 THR 38 A ILE 39 n 13 ILE 39 A LYS 40 n 14 LYS 40 A VAL 41 n 15 VAL 41 A ALA 42 n 16 ALA 42 A ALA 43 n 17 ALA 43 A SER 44 n 18 SER 44 A ALA 45 n 19 ALA 45 A THR 46 n 20 THR 46 A PRO 47 n 21 PRO 47 A HIS 48 n 22 HIS 48 A ALA 49 n 23 ALA 49 A GLU 50 n 24 GLU 50 A ILE 51 n 25 ILE 51 A LEU 52 n 26 LEU 52 A GLU 53 n 27 GLU 53 A GLN 54 n 28 GLN 54 A ALA 55 n 29 ALA 55 A LYS 56 n 30 LYS 56 A SER 57 n 31 SER 57 A ILE 58 n 32 ILE 58 A LEU 59 n 33 LEU 59 A LYS 60 n 34 LYS 60 A LYS 61 n 35 LYS 61 A GLU 62 n 36 GLU 62 A GLY 63 n 37 GLY 63 A TYR 64 n 38 TYR 64 A GLN 65 n 39 GLN 65 A LEU 66 n 40 LEU 66 A GLU 67 n 41 GLU 67 A VAL 68 n 42 VAL 68 A THR 69 n 43 THR 69 A VAL 70 n 44 VAL 70 A PHE 71 n 45 PHE 71 A ASP 72 n 46 ASP 72 A ASP 73 n 47 ASP 73 A TYR 74 n 48 TYR 74 A VAL 75 n 49 VAL 75 A GLN 76 n 50 GLN 76 A PRO 77 n 51 PRO 77 A ASN 78 n 52 ASN 78 A GLU 79 n 53 GLU 79 A VAL 80 n 54 VAL 80 A VAL 81 n 55 VAL 81 A GLU 82 n 56 GLU 82 A SER 83 n 57 SER 83 A GLY 84 n 58 GLY 84 A GLU 85 n 59 GLU 85 A PHE 86 n 60 PHE 86 A ASP 87 n 61 ASP 87 A ALA 88 n 62 ALA 88 A ASN 89 n 63 ASN 89 A TYR 90 n 64 TYR 90 A PHE 91 n 65 PHE 91 A GLN 92 n 66 GLN 92 A HIS 93 n 67 HIS 93 A VAL 94 n 68 VAL 94 A PRO 95 n 69 PRO 95 A TYR 96 n 70 TYR 96 A LEU 97 n 71 LEU 97 A GLU 98 n 72 GLU 98 A SER 99 n 73 SER 99 A PHE 100 n 74 PHE 100 A ASN 101 n 75 ASN 101 A GLU 102 n 76 GLU 102 A GLU 103 n 77 GLU 103 A LYS 104 n 78 LYS 104 A GLY 105 n 79 GLY 105 A THR 106 n 80 THR 106 A HIS 107 n 81 HIS 107 A LEU 108 n 82 LEU 108 A VAL 109 n 83 VAL 109 A ASP 110 n 84 ASP 110 A ALA 111 n 85 ALA 111 A GLY 112 n 86 GLY 112 A ASP 113 n 87 ASP 113 A ILE 114 n 88 ILE 114 A HIS 115 n 89 HIS 115 A TYR 116 n 90 TYR 116 A GLU 117 n 91 GLU 117 A PRO 118 n 92 PRO 118 A PHE 119 n 93 PHE 119 A GLY 120 n 94 GLY 120 A ILE 121 n 95 ILE 121 A TYR 122 n 96 TYR 122 A PRO 123 n 97 PRO 123 A GLY 124 n 98 GLY 124 A THR 125 n 99 THR 125 A LYS 126 n 100 LYS 126 A LYS 127 n 101 LYS 127 A SER 128 n 102 SER 128 A LEU 129 n 103 LEU 129 A ASP 130 n 104 ASP 130 A GLU 131 n 105 GLU 131 A ILE 132 n 106 ILE 132 A SER 133 n 107 SER 133 A GLU 134 n 108 GLU 134 A GLY 135 n 109 GLY 135 A ASP 136 n 110 ASP 136 A LYS 137 n 111 LYS 137 A ILE 138 n 112 ILE 138 A ALA 139 n 113 ALA 139 A VAL 140 n 114 VAL 140 A PRO 141 n 115 PRO 141 A ASN 142 n 116 ASN 142 A ASP 143 n 117 ASP 143 A THR 144 n 118 THR 144 A THR 145 n 119 THR 145 A ASN 146 n 120 ASN 146 A GLU 147 n 121 GLU 147 A ALA 148 n 122 ALA 148 A ARG 149 n 123 ARG 149 A ALA 150 n 124 ALA 150 A LEU 151 n 125 LEU 151 A LEU 152 n 126 LEU 152 A LEU 153 n 127 LEU 153 A LEU 154 n 128 LEU 154 A GLN 155 n 129 GLN 155 A ASP 156 n 130 ASP 156 A ASN 157 n 131 ASN 157 A GLY 158 n 132 GLY 158 A ILE 159 n 133 ILE 159 A ILE 160 n 134 ILE 160 A THR 161 n 135 THR 161 A LEU 162 n 136 LEU 162 A LYS 163 n 137 LYS 163 A ASP 164 n 138 ASP 164 A GLY 165 n 139 GLY 165 A ALA 166 n 140 ALA 166 A GLY 167 n 141 GLY 167 A LEU 168 n 142 LEU 168 A ASN 169 n 143 ASN 169 A ALA 170 n 144 ALA 170 A THR 171 n 145 THR 171 A VAL 172 n 146 VAL 172 A ASN 173 n 147 ASN 173 A ASP 174 n 148 ASP 174 A ILE 175 n 149 ILE 175 A GLU 176 n 150 GLU 176 A GLU 177 n 151 GLU 177 A ASN 178 n 152 ASN 178 A PRO 179 n 153 PRO 179 A TYR 180 n 154 TYR 180 A ASN 181 n 155 ASN 181 A VAL 182 n 156 VAL 182 A GLU 183 n 157 GLU 183 A ILE 184 n 158 ILE 184 A VAL 185 n 159 VAL 185 A GLU 186 n 160 GLU 186 A LEU 187 n 161 LEU 187 A GLU 188 n 162 GLU 188 A ALA 189 n 163 ALA 189 A ALA 190 n 164 ALA 190 A GLN 191 n 165 GLN 191 A VAL 192 n 166 VAL 192 A ALA 193 n 167 ALA 193 A ARG 194 n 168 ARG 194 A VAL 195 n 169 VAL 195 A THR 196 n 170 THR 196 A GLY 197 n 171 GLY 197 A GLU 198 n 172 GLU 198 A THR 199 n 173 THR 199 A ALA 200 n 174 ALA 200 A TYR 201 n 175 TYR 201 A VAL 202 n 176 VAL 202 A VAL 203 n 177 VAL 203 A LEU 204 n 178 LEU 204 A ASN 205 n 179 ASN 205 A GLY 206 n 180 GLY 206 A ASN 207 n 181 ASN 207 A TYR 208 n 182 TYR 208 A ALA 209 n 183 ALA 209 A LEU 210 n 184 LEU 210 A GLU 211 n 185 GLU 211 A ALA 212 n 186 ALA 212 A GLY 213 n 187 GLY 213 A TYR 214 n 188 TYR 214 A SER 215 n 189 SER 215 A VAL 216 n 190 VAL 216 A ALA 217 n 191 ALA 217 A LYS 218 n 192 LYS 218 A ASP 219 n 193 ASP 219 A ALA 220 n 194 ALA 220 A LEU 221 n 195 LEU 221 A ALA 222 n 196 ALA 222 A TYR 223 n 197 TYR 223 A GLU 224 n 198 GLU 224 A LYS 225 n 199 LYS 225 A SER 226 n 200 SER 226 A ASP 227 n 201 ASP 227 A SER 228 n 202 SER 228 A GLU 229 n 203 GLU 229 A ALA 230 n 204 ALA 230 A ALA 231 n 205 ALA 231 A LYS 232 n 206 LYS 232 A THR 233 n 207 THR 233 A TYR 234 n 208 TYR 234 A VAL 235 n 209 VAL 235 A ASN 236 n 210 ASN 236 A ILE 237 n 211 ILE 237 A ILE 238 n 212 ILE 238 A ALA 239 n 213 ALA 239 A VAL 240 n 214 VAL 240 A LYS 241 n 215 LYS 241 A GLU 242 n 216 GLU 242 A GLY 243 n 217 GLY 243 A ASN 244 n 218 ASN 244 A GLU 245 n 219 GLU 245 A LYS 246 n 220 LYS 246 A GLU 247 n 221 GLU 247 A GLU 248 n 222 GLU 248 A LYS 249 n 223 LYS 249 A ILE 250 n 224 ILE 250 A GLN 251 n 225 GLN 251 A ALA 252 n 226 ALA 252 A LEU 253 n 227 LEU 253 A VAL 254 n 228 VAL 254 A LYS 255 n 229 LYS 255 A ALA 256 n 230 ALA 256 A LEU 257 n 231 LEU 257 A LYS 258 n 232 LYS 258 A SER 259 n 233 SER 259 A ASP 260 n 234 ASP 260 A GLU 261 n 235 GLU 261 A ILE 262 n 236 ILE 262 A LYS 263 n 237 LYS 263 A GLU 264 n 238 GLU 264 A TYR 265 n 239 TYR 265 A ILE 266 n 240 ILE 266 A GLU 267 n 241 GLU 267 A LYS 268 n 242 LYS 268 A THR 269 n 243 THR 269 A TYR 270 n 244 TYR 270 A ASP 271 n 245 ASP 271 A GLY 272 n 246 GLY 272 A ALA 273 n 247 ALA 273 A VAL 274 n 248 VAL 274 A ILE 275 n 249 ILE 275 A PRO 276 n 250 PRO 276 A PHE 277 n 251 PHE 277 A GLU 278 n 252 GLU 278 A n 1 0 B n 2 28 B n 3 29 B n 4 30 B n 5 31 B n 6 32 B n 7 33 B n 8 34 B n 9 35 B ALA 36 n 10 ALA 36 B LYS 37 n 11 LYS 37 B THR 38 n 12 THR 38 B ILE 39 n 13 ILE 39 B LYS 40 n 14 LYS 40 B VAL 41 n 15 VAL 41 B ALA 42 n 16 ALA 42 B ALA 43 n 17 ALA 43 B SER 44 n 18 SER 44 B ALA 45 n 19 ALA 45 B THR 46 n 20 THR 46 B PRO 47 n 21 PRO 47 B HIS 48 n 22 HIS 48 B ALA 49 n 23 ALA 49 B GLU 50 n 24 GLU 50 B ILE 51 n 25 ILE 51 B LEU 52 n 26 LEU 52 B GLU 53 n 27 GLU 53 B GLN 54 n 28 GLN 54 B ALA 55 n 29 ALA 55 B LYS 56 n 30 LYS 56 B SER 57 n 31 SER 57 B ILE 58 n 32 ILE 58 B LEU 59 n 33 LEU 59 B LYS 60 n 34 LYS 60 B LYS 61 n 35 LYS 61 B GLU 62 n 36 GLU 62 B GLY 63 n 37 GLY 63 B TYR 64 n 38 TYR 64 B GLN 65 n 39 GLN 65 B LEU 66 n 40 LEU 66 B GLU 67 n 41 GLU 67 B VAL 68 n 42 VAL 68 B THR 69 n 43 THR 69 B VAL 70 n 44 VAL 70 B PHE 71 n 45 PHE 71 B ASP 72 n 46 ASP 72 B ASP 73 n 47 ASP 73 B TYR 74 n 48 TYR 74 B VAL 75 n 49 VAL 75 B GLN 76 n 50 GLN 76 B PRO 77 n 51 PRO 77 B ASN 78 n 52 ASN 78 B GLU 79 n 53 GLU 79 B VAL 80 n 54 VAL 80 B VAL 81 n 55 VAL 81 B GLU 82 n 56 GLU 82 B SER 83 n 57 SER 83 B GLY 84 n 58 GLY 84 B GLU 85 n 59 GLU 85 B PHE 86 n 60 PHE 86 B ASP 87 n 61 ASP 87 B ALA 88 n 62 ALA 88 B ASN 89 n 63 ASN 89 B TYR 90 n 64 TYR 90 B PHE 91 n 65 PHE 91 B GLN 92 n 66 GLN 92 B HIS 93 n 67 HIS 93 B VAL 94 n 68 VAL 94 B PRO 95 n 69 PRO 95 B TYR 96 n 70 TYR 96 B LEU 97 n 71 LEU 97 B GLU 98 n 72 GLU 98 B SER 99 n 73 SER 99 B PHE 100 n 74 PHE 100 B ASN 101 n 75 ASN 101 B GLU 102 n 76 GLU 102 B GLU 103 n 77 GLU 103 B LYS 104 n 78 LYS 104 B GLY 105 n 79 GLY 105 B THR 106 n 80 THR 106 B HIS 107 n 81 HIS 107 B LEU 108 n 82 LEU 108 B VAL 109 n 83 VAL 109 B ASP 110 n 84 ASP 110 B ALA 111 n 85 ALA 111 B GLY 112 n 86 GLY 112 B ASP 113 n 87 ASP 113 B ILE 114 n 88 ILE 114 B HIS 115 n 89 HIS 115 B TYR 116 n 90 TYR 116 B GLU 117 n 91 GLU 117 B PRO 118 n 92 PRO 118 B PHE 119 n 93 PHE 119 B GLY 120 n 94 GLY 120 B ILE 121 n 95 ILE 121 B TYR 122 n 96 TYR 122 B PRO 123 n 97 PRO 123 B GLY 124 n 98 GLY 124 B THR 125 n 99 THR 125 B LYS 126 n 100 LYS 126 B LYS 127 n 101 LYS 127 B SER 128 n 102 SER 128 B LEU 129 n 103 LEU 129 B ASP 130 n 104 ASP 130 B GLU 131 n 105 GLU 131 B ILE 132 n 106 ILE 132 B SER 133 n 107 SER 133 B GLU 134 n 108 GLU 134 B GLY 135 n 109 GLY 135 B ASP 136 n 110 ASP 136 B LYS 137 n 111 LYS 137 B ILE 138 n 112 ILE 138 B ALA 139 n 113 ALA 139 B VAL 140 n 114 VAL 140 B PRO 141 n 115 PRO 141 B ASN 142 n 116 ASN 142 B ASP 143 n 117 ASP 143 B THR 144 n 118 THR 144 B THR 145 n 119 THR 145 B ASN 146 n 120 ASN 146 B GLU 147 n 121 GLU 147 B ALA 148 n 122 ALA 148 B ARG 149 n 123 ARG 149 B ALA 150 n 124 ALA 150 B LEU 151 n 125 LEU 151 B LEU 152 n 126 LEU 152 B LEU 153 n 127 LEU 153 B LEU 154 n 128 LEU 154 B GLN 155 n 129 GLN 155 B ASP 156 n 130 ASP 156 B ASN 157 n 131 ASN 157 B GLY 158 n 132 GLY 158 B ILE 159 n 133 ILE 159 B ILE 160 n 134 ILE 160 B THR 161 n 135 THR 161 B LEU 162 n 136 LEU 162 B LYS 163 n 137 LYS 163 B ASP 164 n 138 ASP 164 B GLY 165 n 139 GLY 165 B ALA 166 n 140 ALA 166 B GLY 167 n 141 GLY 167 B LEU 168 n 142 LEU 168 B ASN 169 n 143 ASN 169 B ALA 170 n 144 ALA 170 B THR 171 n 145 THR 171 B VAL 172 n 146 VAL 172 B ASN 173 n 147 ASN 173 B ASP 174 n 148 ASP 174 B ILE 175 n 149 ILE 175 B GLU 176 n 150 GLU 176 B GLU 177 n 151 GLU 177 B ASN 178 n 152 ASN 178 B PRO 179 n 153 PRO 179 B TYR 180 n 154 TYR 180 B ASN 181 n 155 ASN 181 B VAL 182 n 156 VAL 182 B GLU 183 n 157 GLU 183 B ILE 184 n 158 ILE 184 B VAL 185 n 159 VAL 185 B GLU 186 n 160 GLU 186 B LEU 187 n 161 LEU 187 B GLU 188 n 162 GLU 188 B ALA 189 n 163 ALA 189 B ALA 190 n 164 ALA 190 B GLN 191 n 165 GLN 191 B VAL 192 n 166 VAL 192 B ALA 193 n 167 ALA 193 B ARG 194 n 168 ARG 194 B VAL 195 n 169 VAL 195 B THR 196 n 170 THR 196 B GLY 197 n 171 GLY 197 B GLU 198 n 172 GLU 198 B THR 199 n 173 THR 199 B ALA 200 n 174 ALA 200 B TYR 201 n 175 TYR 201 B VAL 202 n 176 VAL 202 B VAL 203 n 177 VAL 203 B LEU 204 n 178 LEU 204 B ASN 205 n 179 ASN 205 B GLY 206 n 180 GLY 206 B ASN 207 n 181 ASN 207 B TYR 208 n 182 TYR 208 B ALA 209 n 183 ALA 209 B LEU 210 n 184 LEU 210 B GLU 211 n 185 GLU 211 B ALA 212 n 186 ALA 212 B GLY 213 n 187 GLY 213 B TYR 214 n 188 TYR 214 B SER 215 n 189 SER 215 B VAL 216 n 190 VAL 216 B ALA 217 n 191 ALA 217 B LYS 218 n 192 LYS 218 B ASP 219 n 193 ASP 219 B ALA 220 n 194 ALA 220 B LEU 221 n 195 LEU 221 B ALA 222 n 196 ALA 222 B TYR 223 n 197 TYR 223 B GLU 224 n 198 GLU 224 B LYS 225 n 199 LYS 225 B SER 226 n 200 SER 226 B ASP 227 n 201 ASP 227 B SER 228 n 202 SER 228 B GLU 229 n 203 GLU 229 B ALA 230 n 204 ALA 230 B ALA 231 n 205 ALA 231 B LYS 232 n 206 LYS 232 B THR 233 n 207 THR 233 B TYR 234 n 208 TYR 234 B VAL 235 n 209 VAL 235 B ASN 236 n 210 ASN 236 B ILE 237 n 211 ILE 237 B ILE 238 n 212 ILE 238 B ALA 239 n 213 ALA 239 B VAL 240 n 214 VAL 240 B LYS 241 n 215 LYS 241 B GLU 242 n 216 GLU 242 B GLY 243 n 217 GLY 243 B ASN 244 n 218 ASN 244 B GLU 245 n 219 GLU 245 B LYS 246 n 220 LYS 246 B GLU 247 n 221 GLU 247 B GLU 248 n 222 GLU 248 B LYS 249 n 223 LYS 249 B ILE 250 n 224 ILE 250 B GLN 251 n 225 GLN 251 B ALA 252 n 226 ALA 252 B LEU 253 n 227 LEU 253 B VAL 254 n 228 VAL 254 B LYS 255 n 229 LYS 255 B ALA 256 n 230 ALA 256 B LEU 257 n 231 LEU 257 B LYS 258 n 232 LYS 258 B SER 259 n 233 SER 259 B ASP 260 n 234 ASP 260 B GLU 261 n 235 GLU 261 B ILE 262 n 236 ILE 262 B LYS 263 n 237 LYS 263 B GLU 264 n 238 GLU 264 B TYR 265 n 239 TYR 265 B ILE 266 n 240 ILE 266 B GLU 267 n 241 GLU 267 B LYS 268 n 242 LYS 268 B THR 269 n 243 THR 269 B TYR 270 n 244 TYR 270 B ASP 271 n 245 ASP 271 B GLY 272 n 246 GLY 272 B ALA 273 n 247 ALA 273 B VAL 274 n 248 VAL 274 B ILE 275 n 249 ILE 275 B PRO 276 n 250 PRO 276 B PHE 277 n 251 PHE 277 B GLU 278 n 252 GLU 278 B 0.5984 0.1680 -0.0229 2.6140 0.1982 0.6745 0.0063 0.0263 0.0212 -0.0277 0.0372 -0.1789 -0.0745 0.0418 -0.0435 0.0217 -0.0415 0.0254 -0.0657 -0.0199 -0.0482 refined 18.9443 17.1905 42.3521 X-RAY DIFFRACTION 0.5685 0.0840 0.0353 2.2993 -0.2575 0.8740 -0.0118 0.0617 -0.0786 0.0154 0.0077 0.1889 0.0751 -0.0537 0.0041 0.0284 -0.0332 0.0285 -0.0709 -0.0325 -0.0230 refined 9.3934 -6.1769 42.6588 X-RAY DIFFRACTION 0.5741 -0.7834 0.8991 1.6248 -1.8103 5.6845 -0.0598 0.0925 0.1421 -0.0058 -0.1180 -0.1314 -0.5606 0.4568 0.1777 0.0706 -0.1008 0.0000 -0.1248 -0.0088 -0.1839 refined 19.5659 -5.3552 14.0209 X-RAY DIFFRACTION 0.6226 -0.0405 -0.4234 1.3407 -0.9938 2.7094 -0.0144 0.1119 -0.0527 -0.4844 0.1589 0.2957 0.4915 -0.2556 -0.1445 0.1900 -0.0865 -0.0687 -0.1776 -0.0025 -0.1848 refined 9.6400 -27.8824 18.0824 X-RAY DIFFRACTION A 32 A 116 X-RAY DIFFRACTION 1 { A|32 - A|116 A|234 - A|278 } A 234 A 278 X-RAY DIFFRACTION 1 { A|32 - A|116 A|234 - A|278 } A 117 A 233 X-RAY DIFFRACTION 2 { A|117 - A|233 } B 36 B 116 X-RAY DIFFRACTION 3 { B|36 - B|116 B|234 - B|278 } B 234 B 278 X-RAY DIFFRACTION 3 { B|36 - B|116 B|234 - B|278 } B 117 B 233 X-RAY DIFFRACTION 4 { B|117 - B|233 } author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 67 A O GLU 41 A N VAL 41 A N VAL 15 A N ALA 42 A N ALA 16 A O TYR 90 A O TYR 64 A N GLN 92 A N GLN 66 A O ILE 237 A O ILE 211 A O ASN 236 A O ASN 210 A N HIS 115 A N HIS 89 A N TYR 116 A N TYR 90 A O ILE 275 A O ILE 249 A O GLU 183 A O GLU 157 A N ILE 138 A N ILE 112 A N ALA 139 A N ALA 113 A O VAL 203 A O VAL 177 A O VAL 202 A O VAL 176 A N TYR 122 A N TYR 96 A N ILE 121 A N ILE 95 A O ALA 222 A O ALA 196 A N THR 161 A N THR 135 A O GLU 176 A O GLU 150 B O GLU 67 B O GLU 41 B N ILE 39 B N ILE 13 B N ALA 42 B N ALA 16 B O TYR 90 B O TYR 64 B N GLN 92 B N GLN 66 B O ILE 237 B O ILE 211 B O ASN 236 B O ASN 210 B N HIS 115 B N HIS 89 B N TYR 116 B N TYR 90 B O ILE 275 B O ILE 249 B O VAL 185 B O VAL 159 B N ILE 138 B N ILE 112 B N ALA 139 B N ALA 113 B O VAL 203 B O VAL 177 B O VAL 202 B O VAL 176 B N TYR 122 B N TYR 96 B N ILE 121 B N ILE 95 B O ALA 222 B O ALA 196 B N THR 161 B N THR 135 B O GLU 176 B O GLU 150 1 A CG LYS 37 A CG LYS 11 1 Y 1 A CD LYS 37 A CD LYS 11 1 Y 1 A CE LYS 37 A CE LYS 11 1 Y 1 A NZ LYS 37 A NZ LYS 11 1 Y 1 B CG LYS 37 B CG LYS 11 1 Y 1 B CD LYS 37 B CD LYS 11 1 Y 1 B CE LYS 37 B CE LYS 11 1 Y 1 B NZ LYS 37 B NZ LYS 11 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLU 28 A GLU 2 1 Y 1 A GLU 29 A GLU 3 1 Y 1 A LYS 30 A LYS 4 1 Y 1 A GLY 31 A GLY 5 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B GLU 28 B GLU 2 1 Y 1 B GLU 29 B GLU 3 1 Y 1 B LYS 30 B LYS 4 1 Y 1 B GLY 31 B GLY 5 1 Y 1 B SER 32 B SER 6 1 Y 1 B SER 33 B SER 7 1 Y 1 B GLU 34 B GLU 8 1 Y 1 B ASP 35 B ASP 9 1 Y 1 A PHE 91 -162.15 -20.03 1 A GLU 176 -93.50 -61.37 1 A GLU 176 -94.20 -60.68 1 A TYR 234 -91.91 56.45 1 B PHE 91 -162.14 -18.71 1 B HIS 107 -141.04 43.02 122.210 30.3081 9.000 -3.7639 2.5970 -0.3676 2.0682 1.8520 1.6956 0.9584 0.9502 1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 2. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. NCS RESTRAINTS WERE IMPOSED BY AUTOBUSTER'S LSSR PROCEDURE (-AUTONCS). 4. CHLORIDE (CL) AND GLYCEROL (GOL) FROM THE PURIFICATION AND CRYOPROTECTANT SOLUTION ARE MODELED. 5. ENDOGENOUS METHIONINE (MET) HAS BEEN MODELED AT THE PUTATIVE ACTIVE SITE BASED ON ELECTRON DENSITY AND COMPARISON WITH OTHER SIMILAR PROTEIN STRUCTURES AND IS LIKELY THE NATURAL LIGAND. 0.1844 0.1619 0.1630 1.7600 40.876 2110 41847 5.0400 96.1200 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.233 1.7600 40.876 342 4184 51 0 3791 1897 SINUSOIDAL 2.000 148 HARMONIC 2.000 574 HARMONIC 5.000 3999 HARMONIC 20.000 540 SEMIHARMONIC 5.000 5110 SEMIHARMONIC 4.000 0.010 3999 HARMONIC 2.000 1.050 5449 HARMONIC 2.000 3.750 2.770 0.2190 0.2101 0.2106 1.8100 155 2851 3006 20 5.1600 96.1200 19.456 1.76 40.876 4IB2 41851 -3.000 0.059 1 16.900 96.100 0.562 1.760 1.820 2.4 15284 3914 1 93.500 0.399 1.820 1.900 3.3 17710 4510 1 95.200 0.281 1.900 1.980 4.7 15055 3841 1 95.200 0.195 1.980 2.090 6.7 17216 4389 1 95.600 0.143 2.090 2.220 9.0 16231 4135 1 96.000 0.104 2.220 2.390 12.0 16309 4183 1 96.300 0.075 2.390 2.630 16.4 16345 4174 1 96.800 0.052 2.630 3.010 23.2 16452 4217 1 97.100 0.029 3.010 3.780 37.9 16136 4169 1 97.000 0.020 3.780 51.8 16823 4319 1 98.000 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package January 30, 2009 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS refinement BUSTER 2.10.0 Crystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A SER 32 A SER 6 HELX_P A LYS 37 A LYS 11 1 1 6 A PRO 47 A PRO 21 HELX_P A GLU 62 A GLU 36 1 2 16 A VAL 75 A VAL 49 HELX_P A SER 83 A SER 57 1 3 9 A VAL 94 A VAL 68 HELX_P A GLY 105 A GLY 79 1 4 12 A SER 128 A SER 102 HELX_P A ILE 132 A ILE 106 5 5 5 A ASP 143 A ASP 117 HELX_P A ASN 157 A ASN 131 1 6 15 A ALA 166 A ALA 140 HELX_P A ALA 170 A ALA 144 5 7 5 A THR 171 A THR 145 HELX_P A ASN 173 A ASN 147 5 8 3 A GLU 188 A GLU 162 HELX_P A THR 196 A THR 170 5 9 9 A ASN 205 A ASN 179 HELX_P A ALA 212 A ALA 186 1 10 8 A SER 215 A SER 189 HELX_P A ALA 220 A ALA 194 1 11 6 A SER 228 A SER 202 HELX_P A TYR 234 A TYR 208 1 12 7 A GLU 247 A GLU 221 HELX_P A LYS 258 A LYS 232 1 13 12 A SER 259 A SER 233 HELX_P A TYR 270 A TYR 244 1 14 12 B PRO 47 B PRO 21 HELX_P B GLU 62 B GLU 36 1 15 16 B VAL 75 B VAL 49 HELX_P B SER 83 B SER 57 1 16 9 B VAL 94 B VAL 68 HELX_P B GLY 105 B GLY 79 1 17 12 B SER 128 B SER 102 HELX_P B ILE 132 B ILE 106 5 18 5 B ASP 143 B ASP 117 HELX_P B ASN 157 B ASN 131 1 19 15 B ALA 166 B ALA 140 HELX_P B ALA 170 B ALA 144 5 20 5 B THR 171 B THR 145 HELX_P B ASN 173 B ASN 147 5 21 3 B GLU 188 B GLU 162 HELX_P B THR 196 B THR 170 5 22 9 B ASN 205 B ASN 179 HELX_P B ALA 212 B ALA 186 1 23 8 B SER 215 B SER 189 HELX_P B ALA 220 B ALA 194 1 24 6 B SER 228 B SER 202 HELX_P B TYR 234 B TYR 208 1 25 7 B GLU 247 B GLU 221 HELX_P B LYS 258 B LYS 232 1 26 12 B SER 259 B SER 233 HELX_P B TYR 270 B TYR 244 1 27 12 TRANSPORT PROTEIN putative methionine-bindning, NLPA lipoprotein, PF03180 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSPORT PROTEIN A THR 46 A THR 20 1 A PRO 47 A PRO 21 2.91 B THR 46 B THR 20 1 B PRO 47 B PRO 21 1.82 A7AZY4_RUMGN UNP 1 28 A7AZY4 EEKGSSEDAKTIKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTH LVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNGIITLKDGAGLNATVNDIEENPYNVEIVEL EAAQVARVTGETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEEKIQALVKALKSDEIKEYIE KTYDGAVIPFE 28 278 4IB2 28 278 A7AZY4 A 1 2 252 28 278 4IB2 28 278 A7AZY4 B 1 2 252 1 expression tag GLY 0 4IB2 A A7AZY4 UNP 1 2 expression tag GLY 0 4IB2 B A7AZY4 UNP 1 6 5 2 6 5 2 parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel A GLN 65 A GLN 39 A VAL 70 A VAL 44 A THR 38 A THR 12 A ALA 43 A ALA 17 A ALA 88 A ALA 62 A HIS 93 A HIS 67 A VAL 235 A VAL 209 A LYS 241 A LYS 215 A LEU 108 A LEU 82 A TYR 116 A TYR 90 A ILE 275 A ILE 249 A PRO 276 A PRO 250 A GLU 183 A GLU 157 A LEU 187 A LEU 161 A LYS 137 A LYS 111 A PRO 141 A PRO 115 A TYR 201 A TYR 175 A LEU 204 A LEU 178 A GLY 120 A GLY 94 A PRO 123 A PRO 97 A ALA 222 A ALA 196 A TYR 223 A TYR 197 A THR 161 A THR 135 A LEU 162 A LEU 136 A ILE 175 A ILE 149 A GLU 177 A GLU 151 B GLN 65 B GLN 39 B VAL 70 B VAL 44 B THR 38 B THR 12 B ALA 43 B ALA 17 B ALA 88 B ALA 62 B HIS 93 B HIS 67 B ASN 236 B ASN 210 B VAL 240 B VAL 214 B VAL 109 B VAL 83 B TYR 116 B TYR 90 B ILE 275 B ILE 249 B PRO 276 B PRO 250 B GLU 183 B GLU 157 B LEU 187 B LEU 161 B LYS 137 B LYS 111 B PRO 141 B PRO 115 B TYR 201 B TYR 175 B LEU 204 B LEU 178 B GLY 120 B GLY 94 B PRO 123 B PRO 97 B ALA 222 B ALA 196 B TYR 223 B TYR 197 B THR 161 B THR 135 B LEU 162 B LEU 136 B ILE 175 B ILE 149 B GLU 177 B GLU 151 BINDING SITE FOR RESIDUE CL A 301 A CL 301 Software 5 BINDING SITE FOR RESIDUE CL A 302 A CL 302 Software 2 BINDING SITE FOR RESIDUE CL A 303 A CL 303 Software 1 BINDING SITE FOR RESIDUE CL A 304 A CL 304 Software 3 BINDING SITE FOR RESIDUE MET A 305 A MET 305 Software 15 BINDING SITE FOR RESIDUE GOL A 306 A GOL 306 Software 8 BINDING SITE FOR RESIDUE GOL A 307 A GOL 307 Software 7 BINDING SITE FOR RESIDUE CL B 301 B CL 301 Software 1 BINDING SITE FOR RESIDUE CL B 302 B CL 302 Software 1 BINDING SITE FOR RESIDUE CL B 303 B CL 303 Software 3 BINDING SITE FOR RESIDUE CL B 304 B CL 304 Software 2 BINDING SITE FOR RESIDUE CL B 305 B CL 305 Software 4 BINDING SITE FOR RESIDUE MET B 306 B MET 306 Software 15 BINDING SITE FOR RESIDUE GOL B 307 B GOL 307 Software 6 BINDING SITE FOR RESIDUE GOL B 308 B GOL 308 Software 4 A TYR 74 A TYR 48 5 1_555 A GLU 188 A GLU 162 5 1_555 A ALA 190 A ALA 164 5 1_555 A TYR 208 A TYR 182 5 1_555 A HOH 447 R HOH 5 1_555 A SER 128 A SER 102 2 1_555 A LEU 129 A LEU 103 2 1_555 A ILE 184 A ILE 158 1 1_555 A LYS 137 A LYS 111 3 1_555 A ALA 200 A ALA 174 3 1_555 A HOH 471 R HOH 3 1_555 A HIS 48 A HIS 22 15 1_555 A TYR 74 A TYR 48 15 1_555 A PHE 91 A PHE 65 15 1_555 A GLN 92 A GLN 66 15 1_555 A HIS 93 A HIS 67 15 1_555 A TYR 96 A TYR 70 15 1_555 A GLU 117 A GLU 91 15 1_555 A ASN 146 A ASN 120 15 1_555 A ARG 149 A ARG 123 15 1_555 A ASN 205 A ASN 179 15 1_555 A ASN 207 A ASN 181 15 1_555 A ASN 236 A ASN 210 15 1_555 A HOH 413 R HOH 15 1_555 A HOH 424 R HOH 15 1_555 A HOH 451 R HOH 15 1_555 A ASP 35 A ASP 9 8 1_555 A LYS 40 A LYS 14 8 1_555 A GLY 84 A GLY 58 8 1_555 A GLU 85 A GLU 59 8 1_555 A ASP 87 A ASP 61 8 1_555 A SER 128 A SER 102 8 1_565 A ASP 130 A ASP 104 8 1_565 A HOH 477 R HOH 8 1_555 A LEU 129 A LEU 103 7 1_555 A ASP 130 A ASP 104 7 1_555 A ILE 132 A ILE 106 7 1_555 A ASN 157 A ASN 131 7 1_555 A GLY 158 A GLY 132 7 1_555 A TYR 180 A TYR 154 7 1_555 A HOH 605 R HOH 7 1_555 B TYR 223 B TYR 197 1 1_555 B ILE 184 B ILE 158 1 1_555 B LYS 137 B LYS 111 3 1_555 B HOH 431 S HOH 3 1_555 B HOH 496 S HOH 3 1_555 B SER 128 B SER 102 2 1_555 B LEU 129 B LEU 103 2 1_555 B TYR 74 B TYR 48 4 1_555 B GLU 188 B GLU 162 4 1_555 B ALA 190 B ALA 164 4 1_555 B TYR 208 B TYR 182 4 1_555 B HIS 48 B HIS 22 15 1_555 B TYR 74 B TYR 48 15 1_555 B PHE 91 B PHE 65 15 1_555 B GLN 92 B GLN 66 15 1_555 B HIS 93 B HIS 67 15 1_555 B TYR 96 B TYR 70 15 1_555 B GLU 117 B GLU 91 15 1_555 B ASN 146 B ASN 120 15 1_555 B ARG 149 B ARG 123 15 1_555 B ASN 205 B ASN 179 15 1_555 B ASN 207 B ASN 181 15 1_555 B ASN 236 B ASN 210 15 1_555 B HOH 407 S HOH 15 1_555 B HOH 433 S HOH 15 1_555 B HOH 437 S HOH 15 1_555 A LYS 246 A LYS 220 6 1_545 A GLU 247 A GLU 221 6 1_545 A HOH 444 R HOH 6 1_545 B GLU 211 B GLU 185 6 1_555 B ALA 212 B ALA 186 6 1_555 B GLY 213 B GLY 187 6 1_555 B GLU 50 B GLU 24 4 1_555 B THR 269 B THR 243 4 1_555 B TYR 270 B TYR 244 4 1_555 B HOH 528 S HOH 4 1_555 1 P 1