0.019427
0.000000
0.000000
0.000000
0.015166
0.000000
0.000000
0.000000
0.013797
0.00000
0.00000
0.00000
Brown, C.S.
Leung, D.W.
Xu, W.
Borek, D.M.
Otwinowski, Z.
Ramanan, P.
Stubbs, A.J.
Peterson, D.S.
Binning, J.M.
Amarasinghe, G.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
51.474
65.937
72.480
C27 H20 Cl N O7
505.903
{4-[(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-4-hydroxy-3-(3-methylbenzoyl)-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
C
N
9
N
O
N
10
N
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
N
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
N
20
N
C
N
21
N
C
N
22
N
O
N
23
N
O
Y
24
N
C
Y
25
N
C
N
26
S
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
N
30
N
O
N
31
N
C
N
32
N
O
Y
33
N
C
Y
34
N
C
N
35
N
CL
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
N
N
78
N
C
N
79
N
N
N
80
N
N
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
R
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
S
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
N
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
Y
212
N
C
Y
213
N
N
Y
214
N
C
Y
215
N
C
Y
216
N
N
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
S
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
S
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
P
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
O
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
S
N
380
N
O
N
381
N
O
N
382
N
O
N
383
N
O
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
R
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
N
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
N
N
453
S
C
N
454
N
C
N
455
N
O
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
doub
Y
9
N
doub
Y
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
doub
N
19
N
sing
N
20
N
sing
N
21
N
doub
Y
22
N
doub
Y
23
N
sing
Y
24
N
sing
N
25
N
sing
N
26
N
sing
Y
27
N
doub
Y
28
N
doub
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
sing
N
34
N
sing
Y
35
N
doub
N
36
N
sing
Y
37
N
doub
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
Y
213
N
sing
Y
214
N
doub
Y
215
N
doub
N
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
426
2045
2058
10.1016/j.jmb.2014.01.010
24495995
In Silico Derived Small Molecules Bind the Filovirus VP35 Protein and Inhibit Its Polymerase Cofactor Activity.
2014
10.2210/pdb4ibg/pdb
pdb_00004ibg
100
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9792370
1.0
19-ID
APS
0.9792370
SYNCHROTRON
APS BEAMLINE 19-ID
14210.523
Polymerase cofactor VP35
unp residues 215-340
2
man
polymer
505.903
{4-[(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-4-hydroxy-3-(3-methylbenzoyl)-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid
2
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
213
nat
water
no
no
GHMGKPDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAA
PPVIHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI
GHMGKPDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAA
PPVIHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZEBOV
Mayinga-76
sample
VP35
128952
Ebola virus
562
Escherichia coli
BL21(DE3)
modified pET15b
1
2.16
43.16
VAPOR DIFFUSION, HANGING DROP
5.5
100 mM sodium citrate, pH5.5, 15% PEG3350, 10%DMSO, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Refinement description
Data collection
Database references
Derived calculations
1
0
2014-03-19
1
1
2014-05-14
1
2
2017-11-15
1
3
2019-07-17
1
4
2024-02-28
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_software.classification
_software.contact_author
_software.contact_author_email
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-12-08
REL
REL
1D6
{4-[(2S)-2-(7-chloro-1,3-benzodioxol-5-yl)-4-hydroxy-3-(3-methylbenzoyl)-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid
SO4
SULFATE ION
GOL
GLYCEROL
PO4
PHOSPHATE ION
HOH
water
1D6
1
2
1D6
1D6
401
A
SO4
2
3
SO4
SO4
402
A
SO4
3
3
SO4
SO4
403
A
SO4
5
3
SO4
SO4
404
A
GOL
1
4
GOL
GOL
405
A
1D6
1
2
1D6
1D6
401
B
SO4
4
3
SO4
SO4
402
B
GOL
1
4
GOL
GOL
403
B
GOL
1
4
GOL
GOL
404
B
PO4
1
5
PO4
PO4
405
B
HOH
2
6
HOH
HOH
501
A
HOH
3
6
HOH
HOH
502
A
HOH
5
6
HOH
HOH
503
A
HOH
6
6
HOH
HOH
504
A
HOH
9
6
HOH
HOH
505
A
HOH
13
6
HOH
HOH
506
A
HOH
15
6
HOH
HOH
507
A
HOH
16
6
HOH
HOH
508
A
HOH
17
6
HOH
HOH
509
A
HOH
18
6
HOH
HOH
510
A
HOH
20
6
HOH
HOH
511
A
HOH
21
6
HOH
HOH
512
A
HOH
22
6
HOH
HOH
513
A
HOH
24
6
HOH
HOH
514
A
HOH
27
6
HOH
HOH
515
A
HOH
29
6
HOH
HOH
516
A
HOH
30
6
HOH
HOH
517
A
HOH
33
6
HOH
HOH
518
A
HOH
34
6
HOH
HOH
519
A
HOH
35
6
HOH
HOH
520
A
HOH
36
6
HOH
HOH
521
A
HOH
39
6
HOH
HOH
522
A
HOH
42
6
HOH
HOH
523
A
HOH
46
6
HOH
HOH
524
A
HOH
47
6
HOH
HOH
525
A
HOH
49
6
HOH
HOH
526
A
HOH
50
6
HOH
HOH
527
A
HOH
52
6
HOH
HOH
528
A
HOH
55
6
HOH
HOH
529
A
HOH
58
6
HOH
HOH
530
A
HOH
63
6
HOH
HOH
531
A
HOH
65
6
HOH
HOH
532
A
HOH
66
6
HOH
HOH
533
A
HOH
71
6
HOH
HOH
534
A
HOH
72
6
HOH
HOH
535
A
HOH
73
6
HOH
HOH
536
A
HOH
74
6
HOH
HOH
537
A
HOH
76
6
HOH
HOH
538
A
HOH
78
6
HOH
HOH
539
A
HOH
80
6
HOH
HOH
540
A
HOH
81
6
HOH
HOH
541
A
HOH
82
6
HOH
HOH
542
A
HOH
83
6
HOH
HOH
543
A
HOH
84
6
HOH
HOH
544
A
HOH
86
6
HOH
HOH
545
A
HOH
87
6
HOH
HOH
546
A
HOH
90
6
HOH
HOH
547
A
HOH
92
6
HOH
HOH
548
A
HOH
94
6
HOH
HOH
549
A
HOH
96
6
HOH
HOH
550
A
HOH
98
6
HOH
HOH
551
A
HOH
99
6
HOH
HOH
552
A
HOH
101
6
HOH
HOH
553
A
HOH
107
6
HOH
HOH
554
A
HOH
110
6
HOH
HOH
555
A
HOH
113
6
HOH
HOH
556
A
HOH
116
6
HOH
HOH
557
A
HOH
117
6
HOH
HOH
558
A
HOH
118
6
HOH
HOH
559
A
HOH
119
6
HOH
HOH
560
A
HOH
120
6
HOH
HOH
561
A
HOH
123
6
HOH
HOH
562
A
HOH
124
6
HOH
HOH
563
A
HOH
125
6
HOH
HOH
564
A
HOH
126
6
HOH
HOH
565
A
HOH
129
6
HOH
HOH
566
A
HOH
130
6
HOH
HOH
567
A
HOH
131
6
HOH
HOH
568
A
HOH
137
6
HOH
HOH
569
A
HOH
138
6
HOH
HOH
570
A
HOH
139
6
HOH
HOH
571
A
HOH
140
6
HOH
HOH
572
A
HOH
141
6
HOH
HOH
573
A
HOH
142
6
HOH
HOH
574
A
HOH
143
6
HOH
HOH
575
A
HOH
145
6
HOH
HOH
576
A
HOH
149
6
HOH
HOH
577
A
HOH
152
6
HOH
HOH
578
A
HOH
158
6
HOH
HOH
579
A
HOH
160
6
HOH
HOH
580
A
HOH
161
6
HOH
HOH
581
A
HOH
162
6
HOH
HOH
582
A
HOH
163
6
HOH
HOH
583
A
HOH
164
6
HOH
HOH
584
A
HOH
166
6
HOH
HOH
585
A
HOH
167
6
HOH
HOH
586
A
HOH
169
6
HOH
HOH
587
A
HOH
170
6
HOH
HOH
588
A
HOH
171
6
HOH
HOH
589
A
HOH
172
6
HOH
HOH
590
A
HOH
2
6
HOH
HOH
591
A
HOH
5
6
HOH
HOH
592
A
HOH
6
6
HOH
HOH
593
A
HOH
8
6
HOH
HOH
594
A
HOH
9
6
HOH
HOH
595
A
HOH
10
6
HOH
HOH
596
A
HOH
11
6
HOH
HOH
597
A
HOH
13
6
HOH
HOH
598
A
HOH
19
6
HOH
HOH
599
A
HOH
20
6
HOH
HOH
600
A
HOH
21
6
HOH
HOH
601
A
HOH
23
6
HOH
HOH
602
A
HOH
24
6
HOH
HOH
603
A
HOH
27
6
HOH
HOH
604
A
HOH
29
6
HOH
HOH
605
A
HOH
32
6
HOH
HOH
606
A
HOH
35
6
HOH
HOH
607
A
HOH
36
6
HOH
HOH
608
A
HOH
39
6
HOH
HOH
609
A
HOH
41
6
HOH
HOH
610
A
HOH
1
6
HOH
HOH
501
B
HOH
4
6
HOH
HOH
502
B
HOH
7
6
HOH
HOH
503
B
HOH
8
6
HOH
HOH
504
B
HOH
10
6
HOH
HOH
505
B
HOH
11
6
HOH
HOH
506
B
HOH
12
6
HOH
HOH
507
B
HOH
14
6
HOH
HOH
508
B
HOH
19
6
HOH
HOH
509
B
HOH
23
6
HOH
HOH
510
B
HOH
25
6
HOH
HOH
511
B
HOH
26
6
HOH
HOH
512
B
HOH
28
6
HOH
HOH
513
B
HOH
31
6
HOH
HOH
514
B
HOH
32
6
HOH
HOH
515
B
HOH
37
6
HOH
HOH
516
B
HOH
38
6
HOH
HOH
517
B
HOH
40
6
HOH
HOH
518
B
HOH
41
6
HOH
HOH
519
B
HOH
43
6
HOH
HOH
520
B
HOH
44
6
HOH
HOH
521
B
HOH
45
6
HOH
HOH
522
B
HOH
48
6
HOH
HOH
523
B
HOH
51
6
HOH
HOH
524
B
HOH
53
6
HOH
HOH
525
B
HOH
54
6
HOH
HOH
526
B
HOH
56
6
HOH
HOH
527
B
HOH
57
6
HOH
HOH
528
B
HOH
59
6
HOH
HOH
529
B
HOH
60
6
HOH
HOH
530
B
HOH
61
6
HOH
HOH
531
B
HOH
62
6
HOH
HOH
532
B
HOH
64
6
HOH
HOH
533
B
HOH
67
6
HOH
HOH
534
B
HOH
68
6
HOH
HOH
535
B
HOH
69
6
HOH
HOH
536
B
HOH
70
6
HOH
HOH
537
B
HOH
75
6
HOH
HOH
538
B
HOH
77
6
HOH
HOH
539
B
HOH
79
6
HOH
HOH
540
B
HOH
85
6
HOH
HOH
541
B
HOH
88
6
HOH
HOH
542
B
HOH
89
6
HOH
HOH
543
B
HOH
91
6
HOH
HOH
544
B
HOH
93
6
HOH
HOH
545
B
HOH
95
6
HOH
HOH
546
B
HOH
97
6
HOH
HOH
547
B
HOH
100
6
HOH
HOH
548
B
HOH
102
6
HOH
HOH
549
B
HOH
103
6
HOH
HOH
550
B
HOH
104
6
HOH
HOH
551
B
HOH
105
6
HOH
HOH
552
B
HOH
106
6
HOH
HOH
553
B
HOH
108
6
HOH
HOH
554
B
HOH
109
6
HOH
HOH
555
B
HOH
111
6
HOH
HOH
556
B
HOH
112
6
HOH
HOH
557
B
HOH
114
6
HOH
HOH
558
B
HOH
115
6
HOH
HOH
559
B
HOH
121
6
HOH
HOH
560
B
HOH
122
6
HOH
HOH
561
B
HOH
127
6
HOH
HOH
562
B
HOH
128
6
HOH
HOH
563
B
HOH
132
6
HOH
HOH
564
B
HOH
133
6
HOH
HOH
565
B
HOH
134
6
HOH
HOH
566
B
HOH
135
6
HOH
HOH
567
B
HOH
136
6
HOH
HOH
568
B
HOH
144
6
HOH
HOH
569
B
HOH
146
6
HOH
HOH
570
B
HOH
147
6
HOH
HOH
571
B
HOH
148
6
HOH
HOH
572
B
HOH
150
6
HOH
HOH
573
B
HOH
151
6
HOH
HOH
574
B
HOH
153
6
HOH
HOH
575
B
HOH
154
6
HOH
HOH
576
B
HOH
155
6
HOH
HOH
577
B
HOH
156
6
HOH
HOH
578
B
HOH
157
6
HOH
HOH
579
B
HOH
159
6
HOH
HOH
580
B
HOH
165
6
HOH
HOH
581
B
HOH
168
6
HOH
HOH
582
B
HOH
1
6
HOH
HOH
583
B
HOH
3
6
HOH
HOH
584
B
HOH
4
6
HOH
HOH
585
B
HOH
7
6
HOH
HOH
586
B
HOH
12
6
HOH
HOH
587
B
HOH
14
6
HOH
HOH
588
B
HOH
15
6
HOH
HOH
589
B
HOH
16
6
HOH
HOH
590
B
HOH
17
6
HOH
HOH
591
B
HOH
18
6
HOH
HOH
592
B
HOH
22
6
HOH
HOH
593
B
HOH
25
6
HOH
HOH
594
B
HOH
26
6
HOH
HOH
595
B
HOH
28
6
HOH
HOH
596
B
HOH
30
6
HOH
HOH
597
B
HOH
31
6
HOH
HOH
598
B
HOH
33
6
HOH
HOH
599
B
HOH
34
6
HOH
HOH
600
B
HOH
37
6
HOH
HOH
601
B
HOH
38
6
HOH
HOH
602
B
HOH
40
6
HOH
HOH
603
B
n
1
212
A
n
2
213
A
n
3
214
A
n
4
215
A
n
5
216
A
n
6
217
A
ASP
218
n
7
ASP
218
A
ILE
219
n
8
ILE
219
A
SER
220
n
9
SER
220
A
ALA
221
n
10
ALA
221
A
LYS
222
n
11
LYS
222
A
ASP
223
n
12
ASP
223
A
LEU
224
n
13
LEU
224
A
ARG
225
n
14
ARG
225
A
ASN
226
n
15
ASN
226
A
ILE
227
n
16
ILE
227
A
MET
228
n
17
MET
228
A
TYR
229
n
18
TYR
229
A
ASP
230
n
19
ASP
230
A
HIS
231
n
20
HIS
231
A
LEU
232
n
21
LEU
232
A
PRO
233
n
22
PRO
233
A
GLY
234
n
23
GLY
234
A
PHE
235
n
24
PHE
235
A
GLY
236
n
25
GLY
236
A
THR
237
n
26
THR
237
A
ALA
238
n
27
ALA
238
A
PHE
239
n
28
PHE
239
A
HIS
240
n
29
HIS
240
A
GLN
241
n
30
GLN
241
A
LEU
242
n
31
LEU
242
A
VAL
243
n
32
VAL
243
A
GLN
244
n
33
GLN
244
A
VAL
245
n
34
VAL
245
A
ILE
246
n
35
ILE
246
A
CYS
247
n
36
CYS
247
A
LYS
248
n
37
LYS
248
A
LEU
249
n
38
LEU
249
A
GLY
250
n
39
GLY
250
A
LYS
251
n
40
LYS
251
A
ASP
252
n
41
ASP
252
A
SER
253
n
42
SER
253
A
ASN
254
n
43
ASN
254
A
SER
255
n
44
SER
255
A
LEU
256
n
45
LEU
256
A
ASP
257
n
46
ASP
257
A
ILE
258
n
47
ILE
258
A
ILE
259
n
48
ILE
259
A
HIS
260
n
49
HIS
260
A
ALA
261
n
50
ALA
261
A
GLU
262
n
51
GLU
262
A
PHE
263
n
52
PHE
263
A
GLN
264
n
53
GLN
264
A
ALA
265
n
54
ALA
265
A
SER
266
n
55
SER
266
A
LEU
267
n
56
LEU
267
A
ALA
268
n
57
ALA
268
A
GLU
269
n
58
GLU
269
A
GLY
270
n
59
GLY
270
A
ASP
271
n
60
ASP
271
A
SER
272
n
61
SER
272
A
PRO
273
n
62
PRO
273
A
GLN
274
n
63
GLN
274
A
CYS
275
n
64
CYS
275
A
ALA
276
n
65
ALA
276
A
LEU
277
n
66
LEU
277
A
ILE
278
n
67
ILE
278
A
GLN
279
n
68
GLN
279
A
ILE
280
n
69
ILE
280
A
THR
281
n
70
THR
281
A
LYS
282
n
71
LYS
282
A
ARG
283
n
72
ARG
283
A
VAL
284
n
73
VAL
284
A
PRO
285
n
74
PRO
285
A
ILE
286
n
75
ILE
286
A
PHE
287
n
76
PHE
287
A
GLN
288
n
77
GLN
288
A
ASP
289
n
78
ASP
289
A
ALA
290
n
79
ALA
290
A
ALA
291
n
80
ALA
291
A
PRO
292
n
81
PRO
292
A
PRO
293
n
82
PRO
293
A
VAL
294
n
83
VAL
294
A
ILE
295
n
84
ILE
295
A
HIS
296
n
85
HIS
296
A
ILE
297
n
86
ILE
297
A
ARG
298
n
87
ARG
298
A
SER
299
n
88
SER
299
A
ARG
300
n
89
ARG
300
A
GLY
301
n
90
GLY
301
A
ASP
302
n
91
ASP
302
A
ILE
303
n
92
ILE
303
A
PRO
304
n
93
PRO
304
A
ARG
305
n
94
ARG
305
A
ALA
306
n
95
ALA
306
A
CYS
307
n
96
CYS
307
A
GLN
308
n
97
GLN
308
A
LYS
309
n
98
LYS
309
A
SER
310
n
99
SER
310
A
LEU
311
n
100
LEU
311
A
ARG
312
n
101
ARG
312
A
PRO
313
n
102
PRO
313
A
VAL
314
n
103
VAL
314
A
PRO
315
n
104
PRO
315
A
PRO
316
n
105
PRO
316
A
SER
317
n
106
SER
317
A
PRO
318
n
107
PRO
318
A
LYS
319
n
108
LYS
319
A
ILE
320
n
109
ILE
320
A
ASP
321
n
110
ASP
321
A
ARG
322
n
111
ARG
322
A
GLY
323
n
112
GLY
323
A
TRP
324
n
113
TRP
324
A
VAL
325
n
114
VAL
325
A
CYS
326
n
115
CYS
326
A
VAL
327
n
116
VAL
327
A
PHE
328
n
117
PHE
328
A
GLN
329
n
118
GLN
329
A
LEU
330
n
119
LEU
330
A
GLN
331
n
120
GLN
331
A
ASP
332
n
121
ASP
332
A
GLY
333
n
122
GLY
333
A
LYS
334
n
123
LYS
334
A
THR
335
n
124
THR
335
A
LEU
336
n
125
LEU
336
A
GLY
337
n
126
GLY
337
A
LEU
338
n
127
LEU
338
A
LYS
339
n
128
LYS
339
A
ILE
340
n
129
ILE
340
A
n
1
212
B
n
2
213
B
n
3
214
B
n
4
215
B
n
5
216
B
n
6
217
B
ASP
218
n
7
ASP
218
B
ILE
219
n
8
ILE
219
B
SER
220
n
9
SER
220
B
ALA
221
n
10
ALA
221
B
LYS
222
n
11
LYS
222
B
ASP
223
n
12
ASP
223
B
LEU
224
n
13
LEU
224
B
ARG
225
n
14
ARG
225
B
ASN
226
n
15
ASN
226
B
ILE
227
n
16
ILE
227
B
MET
228
n
17
MET
228
B
TYR
229
n
18
TYR
229
B
ASP
230
n
19
ASP
230
B
HIS
231
n
20
HIS
231
B
LEU
232
n
21
LEU
232
B
PRO
233
n
22
PRO
233
B
GLY
234
n
23
GLY
234
B
PHE
235
n
24
PHE
235
B
GLY
236
n
25
GLY
236
B
THR
237
n
26
THR
237
B
ALA
238
n
27
ALA
238
B
PHE
239
n
28
PHE
239
B
HIS
240
n
29
HIS
240
B
GLN
241
n
30
GLN
241
B
LEU
242
n
31
LEU
242
B
VAL
243
n
32
VAL
243
B
GLN
244
n
33
GLN
244
B
VAL
245
n
34
VAL
245
B
ILE
246
n
35
ILE
246
B
CYS
247
n
36
CYS
247
B
LYS
248
n
37
LYS
248
B
LEU
249
n
38
LEU
249
B
GLY
250
n
39
GLY
250
B
LYS
251
n
40
LYS
251
B
ASP
252
n
41
ASP
252
B
SER
253
n
42
SER
253
B
ASN
254
n
43
ASN
254
B
SER
255
n
44
SER
255
B
LEU
256
n
45
LEU
256
B
ASP
257
n
46
ASP
257
B
ILE
258
n
47
ILE
258
B
ILE
259
n
48
ILE
259
B
HIS
260
n
49
HIS
260
B
ALA
261
n
50
ALA
261
B
GLU
262
n
51
GLU
262
B
PHE
263
n
52
PHE
263
B
GLN
264
n
53
GLN
264
B
ALA
265
n
54
ALA
265
B
SER
266
n
55
SER
266
B
LEU
267
n
56
LEU
267
B
ALA
268
n
57
ALA
268
B
GLU
269
n
58
GLU
269
B
GLY
270
n
59
GLY
270
B
ASP
271
n
60
ASP
271
B
SER
272
n
61
SER
272
B
PRO
273
n
62
PRO
273
B
GLN
274
n
63
GLN
274
B
CYS
275
n
64
CYS
275
B
ALA
276
n
65
ALA
276
B
LEU
277
n
66
LEU
277
B
ILE
278
n
67
ILE
278
B
GLN
279
n
68
GLN
279
B
ILE
280
n
69
ILE
280
B
THR
281
n
70
THR
281
B
LYS
282
n
71
LYS
282
B
ARG
283
n
72
ARG
283
B
VAL
284
n
73
VAL
284
B
PRO
285
n
74
PRO
285
B
ILE
286
n
75
ILE
286
B
PHE
287
n
76
PHE
287
B
GLN
288
n
77
GLN
288
B
ASP
289
n
78
ASP
289
B
ALA
290
n
79
ALA
290
B
ALA
291
n
80
ALA
291
B
PRO
292
n
81
PRO
292
B
PRO
293
n
82
PRO
293
B
VAL
294
n
83
VAL
294
B
ILE
295
n
84
ILE
295
B
HIS
296
n
85
HIS
296
B
ILE
297
n
86
ILE
297
B
ARG
298
n
87
ARG
298
B
SER
299
n
88
SER
299
B
ARG
300
n
89
ARG
300
B
GLY
301
n
90
GLY
301
B
ASP
302
n
91
ASP
302
B
ILE
303
n
92
ILE
303
B
PRO
304
n
93
PRO
304
B
ARG
305
n
94
ARG
305
B
ALA
306
n
95
ALA
306
B
CYS
307
n
96
CYS
307
B
GLN
308
n
97
GLN
308
B
LYS
309
n
98
LYS
309
B
SER
310
n
99
SER
310
B
LEU
311
n
100
LEU
311
B
ARG
312
n
101
ARG
312
B
PRO
313
n
102
PRO
313
B
VAL
314
n
103
VAL
314
B
PRO
315
n
104
PRO
315
B
PRO
316
n
105
PRO
316
B
SER
317
n
106
SER
317
B
PRO
318
n
107
PRO
318
B
LYS
319
n
108
LYS
319
B
ILE
320
n
109
ILE
320
B
ASP
321
n
110
ASP
321
B
ARG
322
n
111
ARG
322
B
GLY
323
n
112
GLY
323
B
TRP
324
n
113
TRP
324
B
VAL
325
n
114
VAL
325
B
CYS
326
n
115
CYS
326
B
VAL
327
n
116
VAL
327
B
PHE
328
n
117
PHE
328
B
GLN
329
n
118
GLN
329
B
LEU
330
n
119
LEU
330
B
GLN
331
n
120
GLN
331
B
ASP
332
n
121
ASP
332
B
GLY
333
n
122
GLY
333
B
LYS
334
n
123
LYS
334
B
THR
335
n
124
THR
335
B
LEU
336
n
125
LEU
336
B
GLY
337
n
126
GLY
337
B
LEU
338
n
127
LEU
338
B
LYS
339
n
128
LYS
339
B
ILE
340
n
129
ILE
340
B
4.9017
0.6154
-0.7339
1.7798
0.3512
2.5990
-0.0825
0.3879
-0.5540
-0.0892
0.0077
0.2185
0.2041
-0.1879
0.0225
0.1212
-0.0036
-0.0031
0.0842
-0.0347
0.1600
refined
2.4490
22.7346
-12.1713
X-RAY DIFFRACTION
3.3430
-1.3964
0.2658
0.9914
-0.3075
1.3187
-0.1667
-0.0550
-0.3711
0.0495
0.0976
0.0933
0.1271
-0.0252
0.0305
0.0992
0.0042
0.0104
0.0496
-0.0057
0.0851
refined
6.1231
26.1087
-4.2094
X-RAY DIFFRACTION
8.3182
2.9389
-5.1873
2.3843
-2.8889
5.9410
0.0676
0.4259
0.2515
-0.0231
0.1081
0.1763
-0.0907
-0.1775
-0.1345
0.0898
0.0120
-0.0132
0.0786
0.0123
0.0731
refined
-0.2375
33.2002
-13.7206
X-RAY DIFFRACTION
2.9275
0.5225
-3.1895
1.1492
0.3996
5.7394
0.1881
0.2106
0.5080
0.0788
0.1451
0.2154
-0.2951
0.0255
-0.1637
0.0982
0.0075
0.0139
0.0751
0.0405
0.1352
refined
8.0167
37.1987
-9.9935
X-RAY DIFFRACTION
3.2621
-1.8848
0.8978
5.0571
-2.7895
4.2242
-0.0252
-0.0744
0.1284
0.1911
-0.0812
-0.1033
-0.0810
-0.0262
0.0551
0.0657
-0.0065
0.0198
0.0702
-0.0195
0.0766
refined
2.1002
30.4902
4.6427
X-RAY DIFFRACTION
5.4312
-2.0121
-2.9053
5.3935
1.3495
2.1644
-0.2011
-0.4426
-0.4655
0.5511
0.1534
-0.1252
0.3697
0.2124
0.0330
0.2207
0.0388
0.0121
0.1339
0.0527
0.1378
refined
14.3022
19.8480
6.9999
X-RAY DIFFRACTION
3.8049
-0.1815
-0.9701
4.7631
2.2278
3.2913
0.0524
-0.0095
-0.2977
0.0244
-0.0077
-0.5183
0.5682
0.3581
0.0392
0.1358
0.0518
-0.0079
0.1162
0.0071
0.1327
refined
18.9431
24.3968
3.2188
X-RAY DIFFRACTION
2.6544
-0.1498
1.0091
0.4170
-0.7363
3.2519
-0.2318
-0.2808
0.5505
0.0931
-0.0167
-0.0264
-0.5393
0.0672
0.0414
0.1519
0.0179
-0.0239
0.0593
-0.0533
0.1164
refined
10.1178
36.2761
10.4687
X-RAY DIFFRACTION
3.2020
0.2115
0.6630
5.2592
-1.6916
4.0067
-0.0163
-0.0301
0.2289
0.3081
-0.0140
-0.0570
-0.2310
-0.0327
-0.0012
0.1070
0.0031
0.0101
0.0620
-0.0120
0.1101
refined
7.3032
33.2993
5.4689
X-RAY DIFFRACTION
1.6855
-0.0475
-0.6040
2.9237
-0.7357
4.7509
0.0358
-0.2290
-0.1352
-0.0444
-0.0054
0.0541
0.4683
-0.0935
0.0503
0.1296
-0.0231
-0.0033
0.1320
0.0245
0.0987
refined
11.0070
26.8277
11.6309
X-RAY DIFFRACTION
4.9473
0.1047
-1.1853
2.0727
-0.1759
0.5163
-0.1288
-0.3883
-0.6910
0.1190
0.0905
-0.4096
0.1237
0.1968
0.0013
0.1286
0.0169
-0.0183
0.1334
0.0444
0.2028
refined
-2.4389
22.1514
35.1417
X-RAY DIFFRACTION
4.2119
1.6659
0.3525
0.9748
0.3218
1.3730
-0.1031
-0.0066
-0.3701
-0.0172
0.0520
-0.0531
0.1007
0.0312
0.0555
0.1024
-0.0005
0.0086
0.0460
0.0003
0.0895
refined
-6.2507
25.5609
27.2826
X-RAY DIFFRACTION
7.0418
-2.2878
-3.5853
1.8476
2.1828
4.0850
0.0281
-0.3526
0.1915
0.0583
0.1263
-0.1511
-0.0557
0.0619
-0.0829
0.0771
0.0027
-0.0054
0.0706
0.0016
0.0484
refined
0.5820
32.6624
36.6888
X-RAY DIFFRACTION
2.7162
0.1458
-2.8046
0.2267
-0.4019
3.9815
0.2261
-0.1455
0.3141
0.0032
0.0420
-0.0385
-0.3230
0.0221
-0.1308
0.1043
0.0120
0.0084
0.0831
-0.0256
0.1205
refined
-7.9506
36.7443
33.4817
X-RAY DIFFRACTION
1.9908
0.8370
0.1765
1.5813
1.1998
2.6396
-0.1406
0.1694
0.0857
-0.1594
0.0562
0.1224
-0.0361
0.0566
0.0636
0.0855
0.0056
0.0017
0.0464
0.0022
0.0972
refined
-4.9671
27.8977
18.0374
X-RAY DIFFRACTION
4.0361
0.3776
-0.4914
4.0201
-3.1895
4.7289
0.2495
-0.0274
-0.2375
0.1369
-0.1216
0.6267
0.6200
-0.1480
0.0661
0.1629
-0.0316
0.0258
0.1191
-0.0282
0.1966
refined
-18.9392
24.3033
19.8510
X-RAY DIFFRACTION
3.1220
0.3787
1.4424
1.1174
2.1012
4.1038
-0.1168
0.2539
0.3362
-0.0672
-0.0141
0.1527
-0.5304
0.0705
0.0614
0.1076
-0.0012
-0.0079
0.0709
0.0371
0.1146
refined
-10.2167
35.9714
13.2651
X-RAY DIFFRACTION
2.2709
0.0271
0.1341
2.5829
0.4588
3.3401
0.0483
0.1727
0.0933
0.0199
-0.0716
0.0031
0.0992
-0.0809
0.0392
0.0898
0.0028
0.0165
0.0674
0.0070
0.1048
refined
-9.0459
30.1540
14.7373
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 218 through 231 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 232 through 252 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 253 through 269 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 270 through 283 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 284 through 299 )
X-RAY DIFFRACTION
6
chain 'A' and (resid 300 through 304 )
X-RAY DIFFRACTION
7
chain 'A' and (resid 305 through 310 )
X-RAY DIFFRACTION
8
chain 'A' and (resid 311 through 319 )
X-RAY DIFFRACTION
9
chain 'A' and (resid 320 through 329 )
X-RAY DIFFRACTION
10
chain 'A' and (resid 330 through 340 )
X-RAY DIFFRACTION
11
chain 'B' and (resid 218 through 231 )
X-RAY DIFFRACTION
12
chain 'B' and (resid 232 through 252 )
X-RAY DIFFRACTION
13
chain 'B' and (resid 253 through 269 )
X-RAY DIFFRACTION
14
chain 'B' and (resid 270 through 283 )
X-RAY DIFFRACTION
15
chain 'B' and (resid 284 through 304 )
X-RAY DIFFRACTION
16
chain 'B' and (resid 305 through 310 )
X-RAY DIFFRACTION
17
chain 'B' and (resid 311 through 319 )
X-RAY DIFFRACTION
18
chain 'B' and (resid 320 through 340 )
software_defined_assembly
PISA
2
dimeric
2820
-70
12990
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
295
A
N
ILE
84
A
O
VAL
327
A
O
VAL
116
A
N
PHE
328
A
N
PHE
117
A
O
LEU
336
A
O
LEU
125
A
O
GLY
337
A
O
GLY
126
A
N
ARG
312
A
N
ARG
101
B
N
ILE
295
B
N
ILE
84
B
O
VAL
327
B
O
VAL
116
B
N
PHE
328
B
N
PHE
117
B
O
LEU
336
B
O
LEU
125
B
O
GLY
337
B
O
GLY
126
B
N
ARG
312
B
N
ARG
101
1
A
GLY
212
A
GLY
1
1
Y
1
A
HIS
213
A
HIS
2
1
Y
1
A
MET
214
A
MET
3
1
Y
1
A
GLY
215
A
GLY
4
1
Y
1
A
LYS
216
A
LYS
5
1
Y
1
A
PRO
217
A
PRO
6
1
Y
1
B
GLY
212
B
GLY
1
1
Y
1
B
HIS
213
B
HIS
2
1
Y
1
B
MET
214
B
MET
3
1
Y
1
B
GLY
215
B
GLY
4
1
Y
1
B
LYS
216
B
LYS
5
1
Y
1
B
PRO
217
B
PRO
6
1
Y
1
B
B
O
O
HOH
HOH
549
555
2.02
1
B
B
O
O
HOH
HOH
560
567
2.05
1
A
A
O
O
HOH
HOH
570
572
2.08
1
A
A
O
O
HOH
HOH
557
567
2.09
1
A
A
O
O
HOH
HOH
554
564
2.12
1
A
A
O
O
HOH
HOH
530
592
2.15
1
B
B
O
O
HOH
HOH
546
559
2.15
1
A
A
O
O
HOH
HOH
554
598
2.17
1
A
A
O
O
HOH
HOH
569
572
2.17
1
B
B
O
O
HOH
HOH
557
584
2.18
1
A
A
O
O
HOH
HOH
571
572
2.19
1
A
B
O
O
HOH
HOH
591
567
2.09
1_555
2_464
1
B
B
O
O
HOH
HOH
514
588
2.15
1_555
2_465
1
A
B
O
O
HOH
HOH
568
563
2.18
1_555
2_464
1
B
B
O
O
HOH
HOH
517
598
2.19
1_555
2_465
1
A
PRO
316
B
-54.27
-75.24
1
A
SER
317
3.49
79.46
16.9456
0.0000
0.0000
0.0000
0.0000
0.0000
0.0000
0.9570
0.9440
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.1996
0.1783
0.1794
1.413
31.759
2385
47199
5.05
98.43
1.000
0.500
0.14
1
1.33
MOLECULAR REPLACEMENT
22.99
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.413
31.759
213
2238
115
0
1910
0.007
2123
1.162
2902
13.729
828
0.067
308
0.006
376
0.3065
0.2990
1.4421
123
2245
85.00
0.2863
0.2657
1.4734
134
2500
95.00
0.3069
0.2787
1.5077
145
2563
97.00
0.2284
0.2393
1.5454
135
2624
100.00
0.2577
0.2342
1.5872
129
2641
99.00
0.2093
0.1814
1.6339
151
2641
100.00
0.2175
0.1685
1.6866
126
2657
100.00
0.1925
0.1637
1.7469
148
2656
100.00
0.2099
0.1642
1.8169
143
2667
100.00
0.2108
0.1497
1.8995
133
2665
100.00
0.1899
0.1496
1.9997
123
2685
100.00
0.1671
0.1465
2.1249
139
2674
100.00
0.1800
0.1506
2.2890
156
2660
100.00
0.1729
0.1561
2.5192
135
2702
100.00
0.2038
0.1684
2.8835
154
2712
100.00
0.1732
0.1697
3.6321
173
2704
100.00
0.2060
0.1968
31.7672
138
2818
98.00
1.410
50.000
4IBG
47377
0.100
1
8.800
7.600
98.800
0.740
1.410
1.430
1
3.800
87.300
0.645
1.430
1.460
1
4.600
93.800
0.695
1.460
1.490
1
5.500
98.800
0.611
1.490
1.520
1
6.400
99.700
0.564
1.520
1.550
1
7.400
100.000
0.484
1.550
1.590
1
7.800
100.000
0.357
1.590
1.630
1
8.100
99.900
0.318
1.630
1.670
1
8.200
100.000
0.263
1.670
1.720
1
8.300
100.000
0.222
1.720
1.780
1
8.300
100.000
0.177
1.780
1.840
1
8.300
100.000
0.152
1.840
1.910
1
8.400
100.000
0.122
1.910
2.000
1
8.400
100.000
0.101
2.000
2.110
1
8.400
100.000
0.088
2.110
2.240
1
8.400
99.900
0.093
2.240
2.410
1
8.400
100.000
0.086
2.410
2.650
1
8.300
99.900
0.073
2.650
3.040
1
8.300
99.900
0.060
3.040
3.830
1
8.000
99.900
0.051
3.830
50.000
1
7.700
97.400
refinement
PHENIX
1.8.1_1168
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-3000
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
Ebola virus VP35 bound to small molecule
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
SER
220
A
SER
9
HELX_P
A
LEU
232
A
LEU
21
1
1
13
A
THR
237
A
THR
26
HELX_P
A
SER
253
A
SER
42
1
2
17
A
SER
255
A
SER
44
HELX_P
A
GLU
269
A
GLU
58
1
3
15
A
SER
272
A
SER
61
HELX_P
A
VAL
284
A
VAL
73
1
4
13
A
PRO
285
A
PRO
74
HELX_P
A
GLN
288
A
GLN
77
5
5
4
A
SER
299
A
SER
88
HELX_P
A
ILE
303
A
ILE
92
5
6
5
A
PRO
304
A
PRO
93
HELX_P
A
LYS
309
A
LYS
98
5
7
6
A
LYS
319
A
LYS
108
HELX_P
A
ARG
322
A
ARG
111
5
8
4
B
SER
220
B
SER
9
HELX_P
B
LEU
232
B
LEU
21
1
9
13
B
THR
237
B
THR
26
HELX_P
B
SER
253
B
SER
42
1
10
17
B
SER
255
B
SER
44
HELX_P
B
GLU
269
B
GLU
58
1
11
15
B
SER
272
B
SER
61
HELX_P
B
VAL
284
B
VAL
73
1
12
13
B
PRO
285
B
PRO
74
HELX_P
B
GLN
288
B
GLN
77
5
13
4
B
SER
299
B
SER
88
HELX_P
B
ILE
303
B
ILE
92
5
14
5
B
PRO
304
B
PRO
93
HELX_P
B
LYS
309
B
LYS
98
5
15
6
B
LYS
319
B
LYS
108
HELX_P
B
ARG
322
B
ARG
111
5
16
4
TRANSCRIPTION/TRANSCRIPTION inhibitor
interferon inhibitor domain, TRANSCRIPTION-TRANSCRIPTION inhibitor complex
VP35_EBOZM
UNP
1
215
Q05127
GKPDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPV
IHIRSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI
215
340
4IBG
215
340
Q05127
A
1
4
129
215
340
4IBG
215
340
Q05127
B
1
4
129
1
expression tag
GLY
212
4IBG
A
Q05127
UNP
1
1
expression tag
HIS
213
4IBG
A
Q05127
UNP
2
1
expression tag
MET
214
4IBG
A
Q05127
UNP
3
2
expression tag
GLY
212
4IBG
B
Q05127
UNP
1
2
expression tag
HIS
213
4IBG
B
Q05127
UNP
2
2
expression tag
MET
214
4IBG
B
Q05127
UNP
3
4
4
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
294
A
VAL
83
A
HIS
296
A
HIS
85
A
TRP
324
A
TRP
113
A
GLN
329
A
GLN
118
A
THR
335
A
THR
124
A
LYS
339
A
LYS
128
A
LEU
311
A
LEU
100
A
ARG
312
A
ARG
101
B
VAL
294
B
VAL
83
B
HIS
296
B
HIS
85
B
TRP
324
B
TRP
113
B
GLN
329
B
GLN
118
B
THR
335
B
THR
124
B
LYS
339
B
LYS
128
B
LEU
311
B
LEU
100
B
ARG
312
B
ARG
101
BINDING SITE FOR RESIDUE 1D6 A 401
A
1D6
401
Software
13
BINDING SITE FOR RESIDUE SO4 A 402
A
SO4
402
Software
7
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
4
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
7
BINDING SITE FOR RESIDUE GOL A 405
A
GOL
405
Software
8
BINDING SITE FOR RESIDUE 1D6 B 401
B
1D6
401
Software
12
BINDING SITE FOR RESIDUE SO4 B 402
B
SO4
402
Software
6
BINDING SITE FOR RESIDUE GOL B 403
B
GOL
403
Software
8
BINDING SITE FOR RESIDUE GOL B 404
B
GOL
404
Software
7
BINDING SITE FOR RESIDUE PO4 B 405
B
PO4
405
Software
4
A
ALA
221
A
ALA
10
13
1_555
A
GLN
241
A
GLN
30
13
1_555
A
GLN
244
A
GLN
33
13
1_555
A
LYS
248
A
LYS
37
13
1_555
A
LYS
251
A
LYS
40
13
1_555
A
PRO
293
A
PRO
82
13
1_555
A
VAL
294
A
VAL
83
13
1_555
A
ASP
302
A
ASP
91
13
1_555
A
ARG
305
A
ARG
94
13
4_455
A
GOL
405
G
GOL
13
1_555
A
HOH
589
M
HOH
13
1_555
B
HIS
296
B
HIS
85
13
1_555
B
PO4
405
L
PO4
13
1_555
A
TYR
229
A
TYR
18
7
1_555
A
GLY
236
A
GLY
25
7
1_555
A
HIS
240
A
HIS
29
7
1_555
A
GLN
241
A
GLN
30
7
1_555
A
GLN
244
A
GLN
33
7
1_555
A
PRO
304
A
PRO
93
7
1_555
A
HOH
544
M
HOH
7
1_555
A
HIS
296
A
HIS
85
4
1_555
B
ILE
295
B
ILE
84
4
1_555
B
HIS
296
B
HIS
85
4
1_555
B
1D6
401
H
1D6
4
1_555
A
ASP
271
A
ASP
60
7
1_555
A
SER
272
A
SER
61
7
1_555
A
CYS
275
A
CYS
64
7
1_555
A
ASP
332
A
ASP
121
7
2_564
A
GLY
333
A
GLY
122
7
2_564
A
LYS
334
A
LYS
123
7
2_564
B
ASP
252
B
ASP
41
7
2_564
A
PRO
293
A
PRO
82
8
1_555
A
VAL
294
A
VAL
83
8
1_555
A
1D6
401
C
1D6
8
1_555
A
HOH
531
M
HOH
8
1_555
A
HOH
553
M
HOH
8
1_555
B
VAL
294
B
VAL
83
8
1_555
B
HIS
296
B
HIS
85
8
1_555
B
GLN
329
B
GLN
118
8
1_555
A
HIS
296
A
HIS
85
12
1_555
A
SO4
403
E
SO4
12
1_555
B
ALA
221
B
ALA
10
12
1_555
B
GLN
241
B
GLN
30
12
1_555
B
GLN
244
B
GLN
33
12
1_555
B
LYS
248
B
LYS
37
12
1_555
B
LEU
249
B
LEU
38
12
1_555
B
LYS
251
B
LYS
40
12
1_555
B
PRO
293
B
PRO
82
12
1_555
B
ASP
302
B
ASP
91
12
1_555
B
GOL
403
J
GOL
12
1_555
B
HOH
596
N
HOH
12
1_555
B
TYR
229
B
TYR
18
6
1_555
B
GLY
236
B
GLY
25
6
1_555
B
GLN
241
B
GLN
30
6
1_555
B
GLN
244
B
GLN
33
6
1_555
B
PRO
304
B
PRO
93
6
1_555
B
HOH
583
N
HOH
6
1_555
A
VAL
294
A
VAL
83
8
1_555
A
GLN
329
A
GLN
118
8
1_555
B
PRO
293
B
PRO
82
8
1_555
B
VAL
294
B
VAL
83
8
1_555
B
1D6
401
H
1D6
8
1_555
B
HOH
538
N
HOH
8
1_555
B
HOH
542
N
HOH
8
1_555
B
HOH
566
N
HOH
8
1_555
A
ASP
252
A
ASP
41
7
2_465
B
ASP
271
B
ASP
60
7
1_555
B
SER
272
B
SER
61
7
1_555
B
CYS
275
B
CYS
64
7
1_555
B
ASP
332
B
ASP
121
7
2_465
B
GLY
333
B
GLY
122
7
2_465
B
LYS
334
B
LYS
123
7
2_465
A
ILE
295
A
ILE
84
4
1_555
A
HIS
296
A
HIS
85
4
1_555
A
1D6
401
C
1D6
4
1_555
B
HIS
296
B
HIS
85
4
1_555
19
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