0.007266
0.000000
0.000439
0.000000
0.019880
0.000000
0.000000
0.000000
0.029459
0.00000
0.00000
0.00000
Eldar, A.
Rozenberg, H.
Diskin-Posner, Y.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
93.46
90.00
137.631
50.302
34.008
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
N
Y
297
N
C
Y
298
N
C
Y
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
S
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
S
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
R
C
N
462
N
O
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
N
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
O
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
N
530
N
C
N
531
N
C
N
532
N
O
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
sing
Y
299
N
doub
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
doub
N
487
N
sing
Y
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
N
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
doub
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
8748
8759
10.1093/nar/gkt630
23863845
Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions.
2013
10.2210/pdb4ibv/pdb
pdb_00004ibv
100
1
Pt coated Si mirror in Kirkpatrick-Baez geometry
CCD
2009-02-17
MARMOSAIC 225 mm CCD
SILICON (111)
SINGLE WAVELENGTH
M
x-ray
1
0.8726
1.0
ID23-2
ESRF
0.8726
SYNCHROTRON
ESRF BEAMLINE ID23-2
22521.646
Cellular tumor antigen p53
DNA binding domain
R273C, S240R
1
man
polymer
3664.380
DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3')
1
syn
polymer
62.068
1,2-ETHANEDIOL
7
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
164
nat
water
Antigen NY-CO-13, Phosphoprotein p53, Tumor suppressor p53
no
no
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNRSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVCVCACPGRDRRTEEENLRKKG
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNRSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVCVCACPGRDRRTEEENLRKKG
A
polypeptide(L)
no
no
(DC)(DG)(DG)(DG)(DC)(DA)(DT)(DG)(DC)(DC)(DC)(DG)
CGGGCATGCCCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
P53, TP53
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pET-27-b
1
2.24
45.18
VAPOR DIFFUSION, HANGING DROP
6.1
1:2.4 PROTEIN/DNA RATIO, 16% PEG 3350, 0.18M NH4F, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
-1.252
1
19
B
3
B
10
-5.602
B_DG3:DC10_B
1
-8.359
-0.333
0.076
-0.244
-3.987
1
19
B
4
B
9
0.383
B_DG4:DC9_B
2
-6.121
-0.167
-0.412
-0.083
-1.312
1
19
B
5
B
8
1.854
B_DC5:DG8_B
3
-6.585
0.131
0.148
-0.002
2.477
1
20
B
6
B
7
8.296
B_DA6:DT7_B
4
-13.242
-0.029
0.154
-0.117
-2.477
1
20
B
7
B
6
8.296
B_DT7:DA6_B
5
-13.242
0.029
0.154
-0.117
1.312
1
19
B
8
B
5
1.854
B_DG8:DC5_B
6
-6.585
-0.131
0.148
-0.002
3.987
1
19
B
9
B
4
0.383
B_DC9:DG4_B
7
-6.121
0.167
-0.412
-0.083
1.252
1
19
B
10
B
3
-5.602
B_DC10:DG3_B
8
-8.359
0.333
0.076
-0.244
3.670
34.294
B
B
3
4
0.363
B
B
10
9
3.567
0.214
0.992
-0.058
BB_DG3DG4:DC9DC10_BB
1
4.973
-8.462
33.942
-0.136
-0.815
3.366
35.554
B
B
4
5
0.963
B
B
9
8
3.277
0.586
-0.847
0.128
BB_DG4DC5:DG8DC9_BB
2
-5.173
8.500
35.183
0.123
0.618
3.370
43.562
B
B
5
6
4.809
B
B
8
7
3.280
3.564
0.271
1.179
BB_DC5DA6:DT7DG8_BB
3
1.712
-2.309
43.391
1.239
-0.197
3.691
28.156
B
B
6
7
8.603
B
B
7
6
3.646
4.171
0.000
0.579
BB_DA6DT7:DA6DT7_BB
4
0.000
0.000
27.851
0.089
0.000
3.370
43.562
B
B
7
8
4.809
B
B
6
5
3.280
3.564
-0.271
1.179
BB_DT7DG8:DC5DA6_BB
5
-1.712
2.309
43.391
1.239
0.197
3.366
35.554
B
B
8
9
0.963
B
B
5
4
3.277
0.586
0.847
0.128
BB_DG8DC9:DG4DC5_BB
6
5.173
-8.500
35.183
0.123
-0.618
3.670
34.294
B
B
9
10
0.363
B
B
4
3
3.567
0.213
-0.992
-0.058
BB_DC9DC10:DG3DG4_BB
7
-4.973
8.462
33.942
-0.136
0.815
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-14
1
1
2013-10-23
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-12-09
REL
REL
EDO
1,2-ETHANEDIOL
ZN
ZINC ION
HOH
water
2AC0
PDB entry 2AC0, chain A
PDB
experimental model
EDO
1
3
EDO
EDO
301
A
EDO
2
3
EDO
EDO
302
A
EDO
3
3
EDO
EDO
303
A
EDO
4
3
EDO
EDO
304
A
EDO
5
3
EDO
EDO
305
A
EDO
6
3
EDO
EDO
306
A
EDO
7
3
EDO
EDO
307
A
ZN
1
4
ZN
ZN
308
A
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
3
5
HOH
HOH
403
A
HOH
4
5
HOH
HOH
404
A
HOH
5
5
HOH
HOH
405
A
HOH
6
5
HOH
HOH
406
A
HOH
7
5
HOH
HOH
407
A
HOH
8
5
HOH
HOH
408
A
HOH
9
5
HOH
HOH
409
A
HOH
10
5
HOH
HOH
410
A
HOH
11
5
HOH
HOH
411
A
HOH
12
5
HOH
HOH
412
A
HOH
13
5
HOH
HOH
413
A
HOH
14
5
HOH
HOH
414
A
HOH
15
5
HOH
HOH
415
A
HOH
16
5
HOH
HOH
416
A
HOH
17
5
HOH
HOH
417
A
HOH
18
5
HOH
HOH
418
A
HOH
21
5
HOH
HOH
419
A
HOH
22
5
HOH
HOH
420
A
HOH
23
5
HOH
HOH
421
A
HOH
24
5
HOH
HOH
422
A
HOH
25
5
HOH
HOH
423
A
HOH
26
5
HOH
HOH
424
A
HOH
27
5
HOH
HOH
425
A
HOH
28
5
HOH
HOH
426
A
HOH
29
5
HOH
HOH
427
A
HOH
30
5
HOH
HOH
428
A
HOH
31
5
HOH
HOH
429
A
HOH
32
5
HOH
HOH
430
A
HOH
33
5
HOH
HOH
431
A
HOH
34
5
HOH
HOH
432
A
HOH
35
5
HOH
HOH
433
A
HOH
36
5
HOH
HOH
434
A
HOH
37
5
HOH
HOH
435
A
HOH
38
5
HOH
HOH
436
A
HOH
39
5
HOH
HOH
437
A
HOH
40
5
HOH
HOH
438
A
HOH
41
5
HOH
HOH
439
A
HOH
42
5
HOH
HOH
440
A
HOH
43
5
HOH
HOH
441
A
HOH
44
5
HOH
HOH
442
A
HOH
45
5
HOH
HOH
443
A
HOH
46
5
HOH
HOH
444
A
HOH
47
5
HOH
HOH
445
A
HOH
48
5
HOH
HOH
446
A
HOH
49
5
HOH
HOH
447
A
HOH
50
5
HOH
HOH
448
A
HOH
51
5
HOH
HOH
449
A
HOH
52
5
HOH
HOH
450
A
HOH
53
5
HOH
HOH
451
A
HOH
54
5
HOH
HOH
452
A
HOH
55
5
HOH
HOH
453
A
HOH
56
5
HOH
HOH
454
A
HOH
57
5
HOH
HOH
455
A
HOH
58
5
HOH
HOH
456
A
HOH
59
5
HOH
HOH
457
A
HOH
60
5
HOH
HOH
458
A
HOH
61
5
HOH
HOH
459
A
HOH
62
5
HOH
HOH
460
A
HOH
63
5
HOH
HOH
461
A
HOH
64
5
HOH
HOH
462
A
HOH
66
5
HOH
HOH
463
A
HOH
67
5
HOH
HOH
464
A
HOH
68
5
HOH
HOH
465
A
HOH
69
5
HOH
HOH
466
A
HOH
71
5
HOH
HOH
467
A
HOH
72
5
HOH
HOH
468
A
HOH
73
5
HOH
HOH
469
A
HOH
74
5
HOH
HOH
470
A
HOH
80
5
HOH
HOH
471
A
HOH
82
5
HOH
HOH
472
A
HOH
83
5
HOH
HOH
473
A
HOH
84
5
HOH
HOH
474
A
HOH
85
5
HOH
HOH
475
A
HOH
86
5
HOH
HOH
476
A
HOH
87
5
HOH
HOH
477
A
HOH
88
5
HOH
HOH
478
A
HOH
89
5
HOH
HOH
479
A
HOH
90
5
HOH
HOH
480
A
HOH
91
5
HOH
HOH
481
A
HOH
93
5
HOH
HOH
482
A
HOH
94
5
HOH
HOH
483
A
HOH
95
5
HOH
HOH
484
A
HOH
96
5
HOH
HOH
485
A
HOH
97
5
HOH
HOH
486
A
HOH
98
5
HOH
HOH
487
A
HOH
100
5
HOH
HOH
488
A
HOH
102
5
HOH
HOH
489
A
HOH
103
5
HOH
HOH
490
A
HOH
104
5
HOH
HOH
491
A
HOH
105
5
HOH
HOH
492
A
HOH
106
5
HOH
HOH
493
A
HOH
107
5
HOH
HOH
494
A
HOH
108
5
HOH
HOH
495
A
HOH
109
5
HOH
HOH
496
A
HOH
110
5
HOH
HOH
497
A
HOH
111
5
HOH
HOH
498
A
HOH
112
5
HOH
HOH
499
A
HOH
113
5
HOH
HOH
500
A
HOH
114
5
HOH
HOH
501
A
HOH
117
5
HOH
HOH
502
A
HOH
118
5
HOH
HOH
503
A
HOH
120
5
HOH
HOH
504
A
HOH
121
5
HOH
HOH
505
A
HOH
122
5
HOH
HOH
506
A
HOH
123
5
HOH
HOH
507
A
HOH
124
5
HOH
HOH
508
A
HOH
125
5
HOH
HOH
509
A
HOH
126
5
HOH
HOH
510
A
HOH
127
5
HOH
HOH
511
A
HOH
128
5
HOH
HOH
512
A
HOH
129
5
HOH
HOH
513
A
HOH
130
5
HOH
HOH
514
A
HOH
131
5
HOH
HOH
515
A
HOH
132
5
HOH
HOH
516
A
HOH
133
5
HOH
HOH
517
A
HOH
135
5
HOH
HOH
518
A
HOH
136
5
HOH
HOH
519
A
HOH
137
5
HOH
HOH
520
A
HOH
139
5
HOH
HOH
521
A
HOH
140
5
HOH
HOH
522
A
HOH
141
5
HOH
HOH
523
A
HOH
142
5
HOH
HOH
524
A
HOH
143
5
HOH
HOH
525
A
HOH
144
5
HOH
HOH
526
A
HOH
145
5
HOH
HOH
527
A
HOH
146
5
HOH
HOH
528
A
HOH
147
5
HOH
HOH
529
A
HOH
149
5
HOH
HOH
530
A
HOH
150
5
HOH
HOH
531
A
HOH
151
5
HOH
HOH
532
A
HOH
152
5
HOH
HOH
533
A
HOH
154
5
HOH
HOH
534
A
HOH
155
5
HOH
HOH
535
A
HOH
157
5
HOH
HOH
536
A
HOH
158
5
HOH
HOH
537
A
HOH
159
5
HOH
HOH
538
A
HOH
160
5
HOH
HOH
539
A
HOH
162
5
HOH
HOH
540
A
HOH
164
5
HOH
HOH
541
A
HOH
165
5
HOH
HOH
542
A
HOH
166
5
HOH
HOH
543
A
HOH
167
5
HOH
HOH
544
A
HOH
19
5
HOH
HOH
101
B
HOH
20
5
HOH
HOH
102
B
HOH
65
5
HOH
HOH
103
B
HOH
70
5
HOH
HOH
104
B
HOH
75
5
HOH
HOH
105
B
HOH
76
5
HOH
HOH
106
B
HOH
77
5
HOH
HOH
107
B
HOH
78
5
HOH
HOH
108
B
HOH
79
5
HOH
HOH
109
B
HOH
81
5
HOH
HOH
110
B
HOH
92
5
HOH
HOH
111
B
HOH
99
5
HOH
HOH
112
B
HOH
101
5
HOH
HOH
113
B
HOH
115
5
HOH
HOH
114
B
HOH
116
5
HOH
HOH
115
B
HOH
119
5
HOH
HOH
116
B
HOH
153
5
HOH
HOH
117
B
HOH
156
5
HOH
HOH
118
B
HOH
161
5
HOH
HOH
119
B
HOH
163
5
HOH
HOH
120
B
SER
94
n
1
SER
94
A
SER
95
n
2
SER
95
A
SER
96
n
3
SER
96
A
VAL
97
n
4
VAL
97
A
PRO
98
n
5
PRO
98
A
SER
99
n
6
SER
99
A
GLN
100
n
7
GLN
100
A
LYS
101
n
8
LYS
101
A
THR
102
n
9
THR
102
A
TYR
103
n
10
TYR
103
A
GLN
104
n
11
GLN
104
A
GLY
105
n
12
GLY
105
A
SER
106
n
13
SER
106
A
TYR
107
n
14
TYR
107
A
GLY
108
n
15
GLY
108
A
PHE
109
n
16
PHE
109
A
ARG
110
n
17
ARG
110
A
LEU
111
n
18
LEU
111
A
GLY
112
n
19
GLY
112
A
PHE
113
n
20
PHE
113
A
LEU
114
n
21
LEU
114
A
HIS
115
n
22
HIS
115
A
SER
116
n
23
SER
116
A
GLY
117
n
24
GLY
117
A
THR
118
n
25
THR
118
A
ALA
119
n
26
ALA
119
A
LYS
120
n
27
LYS
120
A
SER
121
n
28
SER
121
A
VAL
122
n
29
VAL
122
A
THR
123
n
30
THR
123
A
CYS
124
n
31
CYS
124
A
THR
125
n
32
THR
125
A
TYR
126
n
33
TYR
126
A
SER
127
n
34
SER
127
A
PRO
128
n
35
PRO
128
A
ALA
129
n
36
ALA
129
A
LEU
130
n
37
LEU
130
A
ASN
131
n
38
ASN
131
A
LYS
132
n
39
LYS
132
A
MET
133
n
40
MET
133
A
PHE
134
n
41
PHE
134
A
CYS
135
n
42
CYS
135
A
GLN
136
n
43
GLN
136
A
LEU
137
n
44
LEU
137
A
ALA
138
n
45
ALA
138
A
LYS
139
n
46
LYS
139
A
THR
140
n
47
THR
140
A
CYS
141
n
48
CYS
141
A
PRO
142
n
49
PRO
142
A
VAL
143
n
50
VAL
143
A
GLN
144
n
51
GLN
144
A
LEU
145
n
52
LEU
145
A
TRP
146
n
53
TRP
146
A
VAL
147
n
54
VAL
147
A
ASP
148
n
55
ASP
148
A
SER
149
n
56
SER
149
A
THR
150
n
57
THR
150
A
PRO
151
n
58
PRO
151
A
PRO
152
n
59
PRO
152
A
PRO
153
n
60
PRO
153
A
GLY
154
n
61
GLY
154
A
THR
155
n
62
THR
155
A
ARG
156
n
63
ARG
156
A
VAL
157
n
64
VAL
157
A
ARG
158
n
65
ARG
158
A
ALA
159
n
66
ALA
159
A
MET
160
n
67
MET
160
A
ALA
161
n
68
ALA
161
A
ILE
162
n
69
ILE
162
A
TYR
163
n
70
TYR
163
A
LYS
164
n
71
LYS
164
A
GLN
165
n
72
GLN
165
A
SER
166
n
73
SER
166
A
GLN
167
n
74
GLN
167
A
HIS
168
n
75
HIS
168
A
MET
169
n
76
MET
169
A
THR
170
n
77
THR
170
A
GLU
171
n
78
GLU
171
A
VAL
172
n
79
VAL
172
A
VAL
173
n
80
VAL
173
A
ARG
174
n
81
ARG
174
A
ARG
175
n
82
ARG
175
A
CYS
176
n
83
CYS
176
A
PRO
177
n
84
PRO
177
A
HIS
178
n
85
HIS
178
A
HIS
179
n
86
HIS
179
A
GLU
180
n
87
GLU
180
A
ARG
181
n
88
ARG
181
A
CYS
182
n
89
CYS
182
A
SER
183
n
90
SER
183
A
n
91
184
A
n
92
185
A
n
93
186
A
GLY
187
n
94
GLY
187
A
LEU
188
n
95
LEU
188
A
ALA
189
n
96
ALA
189
A
PRO
190
n
97
PRO
190
A
PRO
191
n
98
PRO
191
A
GLN
192
n
99
GLN
192
A
HIS
193
n
100
HIS
193
A
LEU
194
n
101
LEU
194
A
ILE
195
n
102
ILE
195
A
ARG
196
n
103
ARG
196
A
VAL
197
n
104
VAL
197
A
GLU
198
n
105
GLU
198
A
GLY
199
n
106
GLY
199
A
ASN
200
n
107
ASN
200
A
LEU
201
n
108
LEU
201
A
ARG
202
n
109
ARG
202
A
VAL
203
n
110
VAL
203
A
GLU
204
n
111
GLU
204
A
TYR
205
n
112
TYR
205
A
LEU
206
n
113
LEU
206
A
ASP
207
n
114
ASP
207
A
ASP
208
n
115
ASP
208
A
ARG
209
n
116
ARG
209
A
ASN
210
n
117
ASN
210
A
THR
211
n
118
THR
211
A
PHE
212
n
119
PHE
212
A
ARG
213
n
120
ARG
213
A
HIS
214
n
121
HIS
214
A
SER
215
n
122
SER
215
A
VAL
216
n
123
VAL
216
A
VAL
217
n
124
VAL
217
A
VAL
218
n
125
VAL
218
A
PRO
219
n
126
PRO
219
A
TYR
220
n
127
TYR
220
A
GLU
221
n
128
GLU
221
A
PRO
222
n
129
PRO
222
A
PRO
223
n
130
PRO
223
A
GLU
224
n
131
GLU
224
A
VAL
225
n
132
VAL
225
A
GLY
226
n
133
GLY
226
A
SER
227
n
134
SER
227
A
ASP
228
n
135
ASP
228
A
CYS
229
n
136
CYS
229
A
THR
230
n
137
THR
230
A
THR
231
n
138
THR
231
A
ILE
232
n
139
ILE
232
A
HIS
233
n
140
HIS
233
A
TYR
234
n
141
TYR
234
A
ASN
235
n
142
ASN
235
A
TYR
236
n
143
TYR
236
A
MET
237
n
144
MET
237
A
CYS
238
n
145
CYS
238
A
ASN
239
n
146
ASN
239
A
ARG
240
n
147
ARG
240
A
SER
241
n
148
SER
241
A
CYS
242
n
149
CYS
242
A
MET
243
n
150
MET
243
A
GLY
244
n
151
GLY
244
A
GLY
245
n
152
GLY
245
A
MET
246
n
153
MET
246
A
ASN
247
n
154
ASN
247
A
ARG
248
n
155
ARG
248
A
ARG
249
n
156
ARG
249
A
PRO
250
n
157
PRO
250
A
ILE
251
n
158
ILE
251
A
LEU
252
n
159
LEU
252
A
THR
253
n
160
THR
253
A
ILE
254
n
161
ILE
254
A
ILE
255
n
162
ILE
255
A
THR
256
n
163
THR
256
A
LEU
257
n
164
LEU
257
A
GLU
258
n
165
GLU
258
A
ASP
259
n
166
ASP
259
A
SER
260
n
167
SER
260
A
SER
261
n
168
SER
261
A
GLY
262
n
169
GLY
262
A
ASN
263
n
170
ASN
263
A
LEU
264
n
171
LEU
264
A
LEU
265
n
172
LEU
265
A
GLY
266
n
173
GLY
266
A
ARG
267
n
174
ARG
267
A
ASN
268
n
175
ASN
268
A
SER
269
n
176
SER
269
A
PHE
270
n
177
PHE
270
A
GLU
271
n
178
GLU
271
A
VAL
272
n
179
VAL
272
A
CYS
273
n
180
CYS
273
A
VAL
274
n
181
VAL
274
A
CYS
275
n
182
CYS
275
A
ALA
276
n
183
ALA
276
A
CYS
277
n
184
CYS
277
A
PRO
278
n
185
PRO
278
A
GLY
279
n
186
GLY
279
A
ARG
280
n
187
ARG
280
A
ASP
281
n
188
ASP
281
A
ARG
282
n
189
ARG
282
A
ARG
283
n
190
ARG
283
A
THR
284
n
191
THR
284
A
GLU
285
n
192
GLU
285
A
GLU
286
n
193
GLU
286
A
GLU
287
n
194
GLU
287
A
ASN
288
n
195
ASN
288
A
LEU
289
n
196
LEU
289
A
ARG
290
n
197
ARG
290
A
LYS
291
n
198
LYS
291
A
LYS
292
n
199
LYS
292
A
GLY
293
n
200
GLY
293
A
DC
1
n
1
DC
1
B
DG
2
n
2
DG
2
B
DG
3
n
3
DG
3
B
DG
4
n
4
DG
4
B
DC
5
n
5
DC
5
B
DA
6
n
6
DA
6
B
DT
7
n
7
DT
7
B
DG
8
n
8
DG
8
B
DC
9
n
9
DC
9
B
DC
10
n
10
DC
10
B
DC
11
n
11
DC
11
B
n
12
12
B
2.9767
-1.3751
0.5526
2.2381
-0.0615
0.8200
-0.1187
0.1088
0.4307
0.1479
-0.1087
-0.5258
-0.1170
0.0083
0.1585
0.1446
-0.0215
-0.0482
0.1111
0.0402
0.1951
refined
24.3767
25.6079
-2.3676
X-RAY DIFFRACTION
5.3704
-4.0558
-1.6458
5.5512
-0.0730
2.4400
-0.1224
0.5668
-1.1194
-0.1411
-0.0810
0.5387
0.1850
-0.5748
0.3273
0.2177
-0.0533
0.0365
0.2567
-0.0513
0.2000
refined
7.4378
14.6569
-5.0018
X-RAY DIFFRACTION
3.5249
-1.4821
1.0769
3.2864
-0.0491
1.9552
-0.0225
0.2402
0.0414
0.0028
-0.1132
-0.1962
0.0274
0.0436
0.0894
0.1051
0.0034
0.0189
0.0986
0.0190
0.0598
refined
22.1358
19.3778
-4.4248
X-RAY DIFFRACTION
7.6206
1.6681
2.5955
3.5404
4.3642
5.9927
0.0419
-0.5907
0.9941
-0.1285
-0.1361
-0.0898
-0.4998
-0.3605
0.1235
0.2927
0.0154
-0.0888
0.1374
0.0203
0.4119
refined
16.2072
44.0953
-1.2346
X-RAY DIFFRACTION
0.3616
0.0838
0.2190
0.1298
1.2145
6.5309
-0.0048
0.0434
0.0751
0.1097
0.1589
-0.0377
0.1131
0.1951
-0.1659
0.2624
0.0175
0.0005
0.2587
0.0406
0.1554
refined
-1.5000
40.1717
0.5263
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESID 94:176)
X-RAY DIFFRACTION
2
CHAIN A AND (RESID 177:194)
X-RAY DIFFRACTION
3
CHAIN A AND (RESID 195:277)
X-RAY DIFFRACTION
4
CHAIN A AND (RESID 278:293)
X-RAY DIFFRACTION
5
CHAIN B AND (RESID 1:11)
author_and_software_defined_assembly
PISA
4
tetrameric
5450
-10
23150
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
308
J
ZN
ZN
1_555
A
HIS
179
A
ND1
HIS
86
1_555
105.6
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
308
J
ZN
ZN
1_555
A
CYS
238
A
SG
CYS
145
1_555
108.9
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
308
J
ZN
ZN
1_555
A
CYS
238
A
SG
CYS
145
1_555
114.1
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
308
J
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
114.4
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
308
J
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
100.6
A
CYS
238
A
SG
CYS
145
1_555
A
ZN
308
J
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
112.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
110
A
N
ARG
17
A
O
TRP
146
A
O
TRP
53
A
N
LEU
145
A
N
LEU
52
A
O
THR
230
A
O
THR
137
A
O
ASN
235
A
O
ASN
142
A
N
ARG
196
A
N
ARG
103
A
N
SER
127
A
N
SER
34
A
O
LYS
132
A
O
LYS
39
A
N
MET
133
A
N
MET
40
A
O
GLU
271
A
O
GLU
178
A
O
LEU
265
A
O
LEU
172
A
N
LEU
257
A
N
LEU
164
A
O
GLU
258
A
O
GLU
165
A
N
ARG
156
A
N
ARG
63
A
N
VAL
157
A
N
VAL
64
A
O
VAL
218
A
O
VAL
125
A
O
VAL
217
A
O
VAL
124
A
N
GLU
204
A
N
GLU
111
1
A
CD1
LEU
114
A
CD1
LEU
21
1
Y
1
A
CD2
LEU
114
A
CD2
LEU
21
1
Y
1
A
CD1
LEU
188
A
CD1
LEU
95
1
Y
1
A
CD2
LEU
188
A
CD2
LEU
95
1
Y
1
A
CG
GLU
221
A
CG
GLU
128
1
Y
1
A
CD
GLU
221
A
CD
GLU
128
1
Y
1
A
OE1
GLU
221
A
OE1
GLU
128
1
Y
1
A
OE2
GLU
221
A
OE2
GLU
128
1
Y
1
A
CB
ASP
228
A
CB
ASP
135
1
Y
1
A
CG
ASP
228
A
CG
ASP
135
1
Y
1
A
OD1
ASP
228
A
OD1
ASP
135
1
Y
1
A
OD2
ASP
228
A
OD2
ASP
135
1
Y
1
A
ASP
184
A
ASP
91
1
Y
1
A
SER
185
A
SER
92
1
Y
1
A
ASP
186
A
ASP
93
1
Y
1
B
DG
12
B
DG
12
1
Y
1
-6.73
0.80
109.40
102.67
B
B
B
O5'
C5'
C4'
DC
DC
DC
1
1
1
N
1
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-3.34
0.40
104.50
101.16
B
B
B
O4'
C4'
C3'
DA
DA
DA
6
6
6
N
1
-7.26
1.00
110.10
102.84
B
B
B
C1'
O4'
C4'
DC
DC
DC
11
11
11
B
B
B
N
1
5.33
0.30
108.30
113.63
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
B
B
B
N
1
A
PRO
223
-45.36
156.01
1
A
VAL
225
165.90
126.51
28.0250
0.2294
0.1614
0.1648
2.10
47.235
667
13262
13262
5.03
96.25
1.000
0.260
0.23
1
1.34
MOLECULAR REPLACEMENT
24.42
0.90
1.11
PDB entry 2AC0, chain A
ML
FLAT BULK SOLVENT MODEL
2.10
47.235
164
1949
29
221
1535
0.007
1947
1.210
2674
18.445
771
0.078
284
0.006
315
0.2416
0.1808
2.2580
101
2293
87.00
0.2581
0.1786
2.4852
156
2460
97.00
0.2552
0.1839
2.8448
143
2581
99.00
0.2253
0.1604
3.5839
138
2591
99.00
0.2031
0.1415
47.2472
129
2670
99.00
2.100
50.000
4IBV
13264
0
0
0.082
1
8.800
6.200
96.600
0.255
2.100
2.140
1
3.300
83.600
0.251
2.140
2.180
1
3.700
88.700
0.213
2.180
2.220
1
4.100
90.100
0.209
2.220
2.260
1
4.300
92.700
0.210
2.260
2.310
1
4.700
95.200
0.191
2.310
2.370
1
5.000
97.000
0.190
2.370
2.420
1
5.300
96.600
0.182
2.420
2.490
1
5.800
98.000
0.163
2.490
2.560
1
6.000
98.600
0.157
2.560
2.650
1
6.400
98.600
0.145
2.650
2.740
1
6.700
98.800
0.134
2.740
2.850
1
7.100
98.600
0.123
2.850
2.980
1
7.500
99.100
0.105
2.980
3.140
1
7.600
99.000
0.080
3.140
3.330
1
7.700
99.300
0.065
3.330
3.590
1
7.700
99.100
0.058
3.590
3.950
1
7.700
99.300
0.053
3.950
4.520
1
7.600
99.400
0.050
4.520
5.700
1
7.600
99.600
0.045
5.700
50.000
1
7.300
99.600
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_1405
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
DNA
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
Human p53 core domain with hot spot mutation R273C and second-site suppressor mutation S240R in sequence-specific complex with DNA
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
CYS
176
A
CYS
83
HELX_P
A
CYS
182
A
CYS
89
1
1
7
A
CYS
277
A
CYS
184
HELX_P
A
GLY
293
A
GLY
200
1
2
17
metalc
2.282
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
308
J
ZN
ZN
1_555
metalc
2.094
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
308
J
ZN
ZN
1_555
metalc
2.389
A
CYS
238
A
SG
CYS
145
1_555
A
ZN
308
J
ZN
ZN
1_555
metalc
2.304
A
CYS
242
A
SG
CYS
149
1_555
A
ZN
308
J
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
3
B
N1
DG
3
1_555
B
DC
10
B
N3
DC
10
2_555
hydrog
WATSON-CRICK
B
DG
3
B
N2
DG
3
1_555
B
DC
10
B
O2
DC
10
2_555
hydrog
WATSON-CRICK
B
DG
3
B
O6
DG
3
1_555
B
DC
10
B
N4
DC
10
2_555
hydrog
WATSON-CRICK
B
DG
4
B
N1
DG
4
1_555
B
DC
9
B
N3
DC
9
2_555
hydrog
WATSON-CRICK
B
DG
4
B
N2
DG
4
1_555
B
DC
9
B
O2
DC
9
2_555
hydrog
WATSON-CRICK
B
DG
4
B
O6
DG
4
1_555
B
DC
9
B
N4
DC
9
2_555
hydrog
WATSON-CRICK
B
DC
5
B
N3
DC
5
1_555
B
DG
8
B
N1
DG
8
2_555
hydrog
WATSON-CRICK
B
DC
5
B
N4
DC
5
1_555
B
DG
8
B
O6
DG
8
2_555
hydrog
WATSON-CRICK
B
DC
5
B
O2
DC
5
1_555
B
DG
8
B
N2
DG
8
2_555
hydrog
WATSON-CRICK
B
DA
6
B
N1
DA
6
1_555
B
DT
7
B
N3
DT
7
2_555
hydrog
WATSON-CRICK
B
DA
6
B
N6
DA
6
1_555
B
DT
7
B
O4
DT
7
2_555
hydrog
WATSON-CRICK
B
DT
7
B
N3
DT
7
1_555
B
DA
6
B
N1
DA
6
2_555
hydrog
WATSON-CRICK
B
DT
7
B
O4
DT
7
1_555
B
DA
6
B
N6
DA
6
2_555
hydrog
WATSON-CRICK
B
DG
8
B
N1
DG
8
1_555
B
DC
5
B
N3
DC
5
2_555
hydrog
WATSON-CRICK
B
DG
8
B
N2
DG
8
1_555
B
DC
5
B
O2
DC
5
2_555
hydrog
WATSON-CRICK
B
DG
8
B
O6
DG
8
1_555
B
DC
5
B
N4
DC
5
2_555
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
9
1_555
B
DG
4
B
N1
DG
4
2_555
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
9
1_555
B
DG
4
B
O6
DG
4
2_555
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
9
1_555
B
DG
4
B
N2
DG
4
2_555
hydrog
WATSON-CRICK
B
DC
10
B
N3
DC
10
1_555
B
DG
3
B
N1
DG
3
2_555
hydrog
WATSON-CRICK
B
DC
10
B
N4
DC
10
1_555
B
DG
3
B
O6
DG
3
2_555
hydrog
WATSON-CRICK
B
DC
10
B
O2
DC
10
1_555
B
DG
3
B
N2
DG
3
2_555
DNA BINDING PROTEIN/DNA
METAL-BINDING, LOOP-SHEET-HELIX MOTIF, TRANSCRIPTION, ACTIVATOR, ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, DISEASE MUTATION, RESCUE MUTATION, TUMOR SUPPRESSOR, DNA BINDING PROTEIN-DNA complex
P53_HUMAN
UNP
1
94
P04637
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKG
4IBV
PDB
2
4IBV
94
293
4IBV
94
293
P04637
A
1
1
200
1
12
4IBV
1
12
4IBV
B
2
1
12
1
SER
engineered mutation
ARG
240
4IBV
A
P04637
UNP
240
147
1
ARG
engineered mutation
CYS
273
4IBV
A
P04637
UNP
273
180
4
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
110
A
ARG
17
A
GLY
112
A
GLY
19
A
THR
140
A
THR
47
A
TRP
146
A
TRP
53
A
THR
230
A
THR
137
A
TYR
236
A
TYR
143
A
ILE
195
A
ILE
102
A
GLU
198
A
GLU
105
A
CYS
124
A
CYS
31
A
SER
127
A
SER
34
A
LYS
132
A
LYS
39
A
CYS
135
A
CYS
42
A
LEU
264
A
LEU
171
A
VAL
274
A
VAL
181
A
ILE
251
A
ILE
158
A
GLU
258
A
GLU
165
A
ARG
156
A
ARG
63
A
TYR
163
A
TYR
70
A
HIS
214
A
HIS
121
A
PRO
219
A
PRO
126
A
GLU
204
A
GLU
111
A
ASP
207
A
ASP
114
BINDING SITE FOR RESIDUE EDO A 301
A
EDO
301
Software
5
BINDING SITE FOR RESIDUE EDO A 302
A
EDO
302
Software
9
BINDING SITE FOR RESIDUE EDO A 303
A
EDO
303
Software
7
BINDING SITE FOR RESIDUE EDO A 304
A
EDO
304
Software
7
BINDING SITE FOR RESIDUE EDO A 305
A
EDO
305
Software
5
BINDING SITE FOR RESIDUE EDO A 306
A
EDO
306
Software
8
BINDING SITE FOR RESIDUE EDO A 307
A
EDO
307
Software
4
BINDING SITE FOR RESIDUE ZN A 308
A
ZN
308
Software
4
A
PRO
177
A
PRO
84
5
2_555
A
HIS
178
A
HIS
85
5
1_555
A
ARG
181
A
ARG
88
5
1_555
A
CYS
182
A
CYS
89
5
1_555
A
GLY
244
A
GLY
151
5
2_555
A
THR
140
A
THR
47
9
1_556
A
SER
166
A
SER
73
9
1_555
A
GLN
167
A
GLN
74
9
1_555
A
HIS
168
A
HIS
75
9
1_555
A
MET
169
A
MET
76
9
1_555
A
THR
170
A
THR
77
9
1_555
A
GLU
171
A
GLU
78
9
1_555
A
GLU
198
A
GLU
105
9
1_556
A
HOH
482
K
HOH
9
1_555
A
ASN
131
A
ASN
38
7
4_545
A
PRO
152
A
PRO
59
7
1_555
A
ASP
259
A
ASP
166
7
1_555
A
SER
260
A
SER
167
7
1_555
A
SER
261
A
SER
168
7
1_555
A
HOH
405
K
HOH
7
1_555
A
HOH
484
K
HOH
7
1_555
A
GLY
154
A
GLY
61
7
1_555
A
THR
155
A
THR
62
7
1_555
A
ARG
156
A
ARG
63
7
1_555
A
PRO
219
A
PRO
126
7
1_555
A
EDO
305
G
EDO
7
4_545
A
EDO
306
H
EDO
7
1_555
A
HOH
426
K
HOH
7
1_555
A
LYS
101
A
LYS
8
5
1_555
A
THR
102
A
THR
9
5
1_555
A
GLY
154
A
GLY
61
5
4_555
A
SER
260
A
SER
167
5
4_555
A
EDO
304
F
EDO
5
4_555
A
PRO
151
A
PRO
58
8
1_555
A
PRO
152
A
PRO
59
8
1_555
A
PRO
153
A
PRO
60
8
1_555
A
THR
155
A
THR
62
8
1_555
A
TYR
220
A
TYR
127
8
1_555
A
PRO
222
A
PRO
129
8
1_555
A
EDO
304
F
EDO
8
1_555
A
HOH
498
K
HOH
8
1_555
A
GLU
180
A
GLU
87
4
1_555
A
ARG
181
A
ARG
88
4
1_555
A
SER
183
A
SER
90
4
1_555
A
PRO
191
A
PRO
98
4
1_555
A
CYS
176
A
CYS
83
4
1_555
A
HIS
179
A
HIS
86
4
1_555
A
CYS
238
A
CYS
145
4
1_555
A
CYS
242
A
CYS
149
4
1_555
5
C 1 2 1