0.011679
0.000000
0.000000
0.000000
0.011679
0.000000
0.000000
0.000000
0.017202
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
85.625
85.625
58.134
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN LIGAND
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a putative flavoprotein (BACEGG_01620) from Bacteroides eggerthii DSM 20697 at 1.40 A resolution
10.2210/pdb4ici/pdb
pdb_00004ici
100
1
KOHZU: Double Crystal Si(111)
CCD
2012-11-21
ADSC QUANTUM 315
Double Crystal Si(111)
MAD
M
x-ray
1
0.918401
1.0
0.979493
1.0
0.979199
1.0
8.2.2
ALS
0.918401,0.979493,0.979199
SYNCHROTRON
ALS BEAMLINE 8.2.2
18994.205
Putative flavoprotein
UNP residues 21-190
1
man
polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
UNKNOWN LIGAND
1
syn
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
18.015
water
255
nat
water
no
yes
GQQKQK(MSE)NSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVE(MSE)NDP
K(MSE)RPAIKSKKENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWK
EGRLLNRTDEKAIRAWLDVIAVK
GQQKQKMNSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKS
KKENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNRTDEKA
IRAWLDVIAVK
A
JCSG-417707
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
DSM 20697
sample
BACEGG_01620, ZP_03458840.1
483216
Bacteroides eggerthii
562
Escherichia coli
PB1
Plasmid
SpeedET
1
2.80
56.15
VAPOR DIFFUSION, SITTING DROP
7.5
1.40M tri-Sodium Citrate, 0.1M sodium HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Derived calculations
1
0
2013-01-02
1
1
2017-11-15
1
2
2023-02-01
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-12-10
REL
REL
FMN
FLAVIN MONONUCLEOTIDE
UNL
UNKNOWN LIGAND
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
EDO
1,2-ETHANEDIOL
HOH
water
THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-190 OF THE TARGET SEQUENCE.
FMN
200
2
FMN
FMN
200
A
UNL
201
3
UNL
UNL
201
A
EPE
202
4
EPE
EPE
202
A
EDO
203
5
EDO
EDO
203
A
EDO
204
5
EDO
EDO
204
A
EDO
205
5
EDO
EDO
205
A
HOH
206
6
HOH
HOH
301
A
HOH
207
6
HOH
HOH
302
A
HOH
208
6
HOH
HOH
303
A
HOH
209
6
HOH
HOH
304
A
HOH
210
6
HOH
HOH
305
A
HOH
211
6
HOH
HOH
306
A
HOH
212
6
HOH
HOH
307
A
HOH
213
6
HOH
HOH
308
A
HOH
214
6
HOH
HOH
309
A
HOH
215
6
HOH
HOH
310
A
HOH
216
6
HOH
HOH
311
A
HOH
217
6
HOH
HOH
312
A
HOH
218
6
HOH
HOH
313
A
HOH
219
6
HOH
HOH
314
A
HOH
220
6
HOH
HOH
315
A
HOH
221
6
HOH
HOH
316
A
HOH
222
6
HOH
HOH
317
A
HOH
223
6
HOH
HOH
318
A
HOH
224
6
HOH
HOH
319
A
HOH
225
6
HOH
HOH
320
A
HOH
226
6
HOH
HOH
321
A
HOH
227
6
HOH
HOH
322
A
HOH
228
6
HOH
HOH
323
A
HOH
229
6
HOH
HOH
324
A
HOH
230
6
HOH
HOH
325
A
HOH
231
6
HOH
HOH
326
A
HOH
232
6
HOH
HOH
327
A
HOH
233
6
HOH
HOH
328
A
HOH
234
6
HOH
HOH
329
A
HOH
235
6
HOH
HOH
330
A
HOH
236
6
HOH
HOH
331
A
HOH
237
6
HOH
HOH
332
A
HOH
238
6
HOH
HOH
333
A
HOH
239
6
HOH
HOH
334
A
HOH
240
6
HOH
HOH
335
A
HOH
241
6
HOH
HOH
336
A
HOH
242
6
HOH
HOH
337
A
HOH
243
6
HOH
HOH
338
A
HOH
244
6
HOH
HOH
339
A
HOH
245
6
HOH
HOH
340
A
HOH
246
6
HOH
HOH
341
A
HOH
247
6
HOH
HOH
342
A
HOH
248
6
HOH
HOH
343
A
HOH
249
6
HOH
HOH
344
A
HOH
250
6
HOH
HOH
345
A
HOH
251
6
HOH
HOH
346
A
HOH
252
6
HOH
HOH
347
A
HOH
253
6
HOH
HOH
348
A
HOH
254
6
HOH
HOH
349
A
HOH
255
6
HOH
HOH
350
A
HOH
256
6
HOH
HOH
351
A
HOH
257
6
HOH
HOH
352
A
HOH
258
6
HOH
HOH
353
A
HOH
259
6
HOH
HOH
354
A
HOH
260
6
HOH
HOH
355
A
HOH
261
6
HOH
HOH
356
A
HOH
262
6
HOH
HOH
357
A
HOH
263
6
HOH
HOH
358
A
HOH
264
6
HOH
HOH
359
A
HOH
265
6
HOH
HOH
360
A
HOH
266
6
HOH
HOH
361
A
HOH
267
6
HOH
HOH
362
A
HOH
268
6
HOH
HOH
363
A
HOH
269
6
HOH
HOH
364
A
HOH
270
6
HOH
HOH
365
A
HOH
271
6
HOH
HOH
366
A
HOH
272
6
HOH
HOH
367
A
HOH
273
6
HOH
HOH
368
A
HOH
274
6
HOH
HOH
369
A
HOH
275
6
HOH
HOH
370
A
HOH
276
6
HOH
HOH
371
A
HOH
277
6
HOH
HOH
372
A
HOH
278
6
HOH
HOH
373
A
HOH
279
6
HOH
HOH
374
A
HOH
280
6
HOH
HOH
375
A
HOH
281
6
HOH
HOH
376
A
HOH
282
6
HOH
HOH
377
A
HOH
283
6
HOH
HOH
378
A
HOH
284
6
HOH
HOH
379
A
HOH
285
6
HOH
HOH
380
A
HOH
286
6
HOH
HOH
381
A
HOH
287
6
HOH
HOH
382
A
HOH
288
6
HOH
HOH
383
A
HOH
289
6
HOH
HOH
384
A
HOH
290
6
HOH
HOH
385
A
HOH
291
6
HOH
HOH
386
A
HOH
292
6
HOH
HOH
387
A
HOH
293
6
HOH
HOH
388
A
HOH
294
6
HOH
HOH
389
A
HOH
295
6
HOH
HOH
390
A
HOH
296
6
HOH
HOH
391
A
HOH
297
6
HOH
HOH
392
A
HOH
298
6
HOH
HOH
393
A
HOH
299
6
HOH
HOH
394
A
HOH
300
6
HOH
HOH
395
A
HOH
301
6
HOH
HOH
396
A
HOH
302
6
HOH
HOH
397
A
HOH
303
6
HOH
HOH
398
A
HOH
304
6
HOH
HOH
399
A
HOH
305
6
HOH
HOH
400
A
HOH
306
6
HOH
HOH
401
A
HOH
307
6
HOH
HOH
402
A
HOH
308
6
HOH
HOH
403
A
HOH
309
6
HOH
HOH
404
A
HOH
310
6
HOH
HOH
405
A
HOH
311
6
HOH
HOH
406
A
HOH
312
6
HOH
HOH
407
A
HOH
313
6
HOH
HOH
408
A
HOH
314
6
HOH
HOH
409
A
HOH
315
6
HOH
HOH
410
A
HOH
316
6
HOH
HOH
411
A
HOH
317
6
HOH
HOH
412
A
HOH
318
6
HOH
HOH
413
A
HOH
319
6
HOH
HOH
414
A
HOH
320
6
HOH
HOH
415
A
HOH
321
6
HOH
HOH
416
A
HOH
322
6
HOH
HOH
417
A
HOH
323
6
HOH
HOH
418
A
HOH
324
6
HOH
HOH
419
A
HOH
325
6
HOH
HOH
420
A
HOH
326
6
HOH
HOH
421
A
HOH
327
6
HOH
HOH
422
A
HOH
328
6
HOH
HOH
423
A
HOH
329
6
HOH
HOH
424
A
HOH
330
6
HOH
HOH
425
A
HOH
331
6
HOH
HOH
426
A
HOH
332
6
HOH
HOH
427
A
HOH
333
6
HOH
HOH
428
A
HOH
334
6
HOH
HOH
429
A
HOH
335
6
HOH
HOH
430
A
HOH
336
6
HOH
HOH
431
A
HOH
337
6
HOH
HOH
432
A
HOH
338
6
HOH
HOH
433
A
HOH
339
6
HOH
HOH
434
A
HOH
340
6
HOH
HOH
435
A
HOH
341
6
HOH
HOH
436
A
HOH
342
6
HOH
HOH
437
A
HOH
343
6
HOH
HOH
438
A
HOH
344
6
HOH
HOH
439
A
HOH
345
6
HOH
HOH
440
A
HOH
346
6
HOH
HOH
441
A
HOH
347
6
HOH
HOH
442
A
HOH
348
6
HOH
HOH
443
A
HOH
349
6
HOH
HOH
444
A
HOH
350
6
HOH
HOH
445
A
HOH
351
6
HOH
HOH
446
A
HOH
352
6
HOH
HOH
447
A
HOH
353
6
HOH
HOH
448
A
HOH
354
6
HOH
HOH
449
A
HOH
355
6
HOH
HOH
450
A
HOH
356
6
HOH
HOH
451
A
HOH
357
6
HOH
HOH
452
A
HOH
358
6
HOH
HOH
453
A
HOH
359
6
HOH
HOH
454
A
HOH
360
6
HOH
HOH
455
A
HOH
361
6
HOH
HOH
456
A
HOH
362
6
HOH
HOH
457
A
HOH
363
6
HOH
HOH
458
A
HOH
364
6
HOH
HOH
459
A
HOH
365
6
HOH
HOH
460
A
HOH
366
6
HOH
HOH
461
A
HOH
367
6
HOH
HOH
462
A
HOH
368
6
HOH
HOH
463
A
HOH
369
6
HOH
HOH
464
A
HOH
370
6
HOH
HOH
465
A
HOH
371
6
HOH
HOH
466
A
HOH
372
6
HOH
HOH
467
A
HOH
373
6
HOH
HOH
468
A
HOH
374
6
HOH
HOH
469
A
HOH
375
6
HOH
HOH
470
A
HOH
376
6
HOH
HOH
471
A
HOH
377
6
HOH
HOH
472
A
HOH
378
6
HOH
HOH
473
A
HOH
379
6
HOH
HOH
474
A
HOH
380
6
HOH
HOH
475
A
HOH
381
6
HOH
HOH
476
A
HOH
382
6
HOH
HOH
477
A
HOH
383
6
HOH
HOH
478
A
HOH
384
6
HOH
HOH
479
A
HOH
385
6
HOH
HOH
480
A
HOH
386
6
HOH
HOH
481
A
HOH
387
6
HOH
HOH
482
A
HOH
388
6
HOH
HOH
483
A
HOH
389
6
HOH
HOH
484
A
HOH
390
6
HOH
HOH
485
A
HOH
391
6
HOH
HOH
486
A
HOH
392
6
HOH
HOH
487
A
HOH
393
6
HOH
HOH
488
A
HOH
394
6
HOH
HOH
489
A
HOH
395
6
HOH
HOH
490
A
HOH
396
6
HOH
HOH
491
A
HOH
397
6
HOH
HOH
492
A
HOH
398
6
HOH
HOH
493
A
HOH
399
6
HOH
HOH
494
A
HOH
400
6
HOH
HOH
495
A
HOH
401
6
HOH
HOH
496
A
HOH
402
6
HOH
HOH
497
A
HOH
403
6
HOH
HOH
498
A
HOH
404
6
HOH
HOH
499
A
HOH
405
6
HOH
HOH
500
A
HOH
406
6
HOH
HOH
501
A
HOH
407
6
HOH
HOH
502
A
HOH
408
6
HOH
HOH
503
A
HOH
409
6
HOH
HOH
504
A
HOH
410
6
HOH
HOH
505
A
HOH
411
6
HOH
HOH
506
A
HOH
412
6
HOH
HOH
507
A
HOH
413
6
HOH
HOH
508
A
HOH
414
6
HOH
HOH
509
A
HOH
415
6
HOH
HOH
510
A
HOH
416
6
HOH
HOH
511
A
HOH
417
6
HOH
HOH
512
A
HOH
418
6
HOH
HOH
513
A
HOH
419
6
HOH
HOH
514
A
HOH
420
6
HOH
HOH
515
A
HOH
421
6
HOH
HOH
516
A
HOH
422
6
HOH
HOH
517
A
HOH
423
6
HOH
HOH
518
A
HOH
424
6
HOH
HOH
519
A
HOH
425
6
HOH
HOH
520
A
HOH
426
6
HOH
HOH
521
A
HOH
427
6
HOH
HOH
522
A
HOH
428
6
HOH
HOH
523
A
HOH
429
6
HOH
HOH
524
A
HOH
430
6
HOH
HOH
525
A
HOH
431
6
HOH
HOH
526
A
HOH
432
6
HOH
HOH
527
A
HOH
433
6
HOH
HOH
528
A
HOH
434
6
HOH
HOH
529
A
HOH
435
6
HOH
HOH
530
A
HOH
436
6
HOH
HOH
531
A
HOH
437
6
HOH
HOH
532
A
HOH
438
6
HOH
HOH
533
A
HOH
439
6
HOH
HOH
534
A
HOH
440
6
HOH
HOH
535
A
HOH
441
6
HOH
HOH
536
A
HOH
442
6
HOH
HOH
537
A
HOH
443
6
HOH
HOH
538
A
HOH
444
6
HOH
HOH
539
A
HOH
445
6
HOH
HOH
540
A
HOH
446
6
HOH
HOH
541
A
HOH
447
6
HOH
HOH
542
A
HOH
448
6
HOH
HOH
543
A
HOH
449
6
HOH
HOH
544
A
HOH
450
6
HOH
HOH
545
A
HOH
451
6
HOH
HOH
546
A
HOH
452
6
HOH
HOH
547
A
HOH
453
6
HOH
HOH
548
A
HOH
454
6
HOH
HOH
549
A
HOH
455
6
HOH
HOH
550
A
HOH
456
6
HOH
HOH
551
A
HOH
457
6
HOH
HOH
552
A
HOH
458
6
HOH
HOH
553
A
HOH
459
6
HOH
HOH
554
A
HOH
460
6
HOH
HOH
555
A
n
1
0
A
n
2
21
A
n
3
22
A
n
4
23
A
n
5
24
A
n
6
25
A
n
7
26
A
n
8
27
A
n
9
28
A
n
10
29
A
n
11
30
A
n
12
31
A
ASN
32
n
13
ASN
32
A
SER
33
n
14
SER
33
A
LYS
34
n
15
LYS
34
A
ILE
35
n
16
ILE
35
A
LEU
36
n
17
LEU
36
A
VAL
37
n
18
VAL
37
A
ALA
38
n
19
ALA
38
A
TYR
39
n
20
TYR
39
A
PHE
40
n
21
PHE
40
A
SER
41
n
22
SER
41
A
ALA
42
n
23
ALA
42
A
THR
43
n
24
THR
43
A
GLY
44
n
25
GLY
44
A
THR
45
n
26
THR
45
A
THR
46
n
27
THR
46
A
ALA
47
n
28
ALA
47
A
ARG
48
n
29
ARG
48
A
ALA
49
n
30
ALA
49
A
ALA
50
n
31
ALA
50
A
GLU
51
n
32
GLU
51
A
LYS
52
n
33
LYS
52
A
LEU
53
n
34
LEU
53
A
GLY
54
n
35
GLY
54
A
ALA
55
n
36
ALA
55
A
ALA
56
n
37
ALA
56
A
VAL
57
n
38
VAL
57
A
GLY
58
n
39
GLY
58
A
GLY
59
n
40
GLY
59
A
ASP
60
n
41
ASP
60
A
LEU
61
n
42
LEU
61
A
TYR
62
n
43
TYR
62
A
PRO
63
n
44
PRO
63
A
ILE
64
n
45
ILE
64
A
ALA
65
n
46
ALA
65
A
PRO
66
n
47
PRO
66
A
ALA
67
n
48
ALA
67
A
GLN
68
n
49
GLN
68
A
PRO
69
n
50
PRO
69
A
TYR
70
n
51
TYR
70
A
THR
71
n
52
THR
71
A
SER
72
n
53
SER
72
A
ALA
73
n
54
ALA
73
A
ASP
74
n
55
ASP
74
A
LEU
75
n
56
LEU
75
A
ASP
76
n
57
ASP
76
A
TRP
77
n
58
TRP
77
A
ASN
78
n
59
ASN
78
A
ASN
79
n
60
ASN
79
A
LYS
80
n
61
LYS
80
A
ARG
81
n
62
ARG
81
A
SER
82
n
63
SER
82
A
ARG
83
n
64
ARG
83
A
SER
84
n
65
SER
84
A
SER
85
n
66
SER
85
A
VAL
86
n
67
VAL
86
A
GLU
87
n
68
GLU
87
A
MSE
88
n
69
MSE
88
A
ASN
89
n
70
ASN
89
A
ASP
90
n
71
ASP
90
A
PRO
91
n
72
PRO
91
A
LYS
92
n
73
LYS
92
A
MSE
93
n
74
MSE
93
A
ARG
94
n
75
ARG
94
A
PRO
95
n
76
PRO
95
A
ALA
96
n
77
ALA
96
A
ILE
97
n
78
ILE
97
A
LYS
98
n
79
LYS
98
A
SER
99
n
80
SER
99
A
LYS
100
n
81
LYS
100
A
LYS
101
n
82
LYS
101
A
GLU
102
n
83
GLU
102
A
ASN
103
n
84
ASN
103
A
ILE
104
n
85
ILE
104
A
GLY
105
n
86
GLY
105
A
THR
106
n
87
THR
106
A
TYR
107
n
88
TYR
107
A
ASP
108
n
89
ASP
108
A
VAL
109
n
90
VAL
109
A
VAL
110
n
91
VAL
110
A
PHE
111
n
92
PHE
111
A
ILE
112
n
93
ILE
112
A
GLY
113
n
94
GLY
113
A
TYR
114
n
95
TYR
114
A
PRO
115
n
96
PRO
115
A
ILE
116
n
97
ILE
116
A
TRP
117
n
98
TRP
117
A
TRP
118
n
99
TRP
118
A
ASP
119
n
100
ASP
119
A
LEU
120
n
101
LEU
120
A
ALA
121
n
102
ALA
121
A
PRO
122
n
103
PRO
122
A
ARG
123
n
104
ARG
123
A
ILE
124
n
105
ILE
124
A
ILE
125
n
106
ILE
125
A
ASN
126
n
107
ASN
126
A
THR
127
n
108
THR
127
A
PHE
128
n
109
PHE
128
A
ILE
129
n
110
ILE
129
A
GLU
130
n
111
GLU
130
A
GLY
131
n
112
GLY
131
A
HIS
132
n
113
HIS
132
A
SER
133
n
114
SER
133
A
LEU
134
n
115
LEU
134
A
LYS
135
n
116
LYS
135
A
GLY
136
n
117
GLY
136
A
LYS
137
n
118
LYS
137
A
THR
138
n
119
THR
138
A
VAL
139
n
120
VAL
139
A
VAL
140
n
121
VAL
140
A
PRO
141
n
122
PRO
141
A
PHE
142
n
123
PHE
142
A
ALA
143
n
124
ALA
143
A
THR
144
n
125
THR
144
A
SER
145
n
126
SER
145
A
GLY
146
n
127
GLY
146
A
GLY
147
n
128
GLY
147
A
SER
148
n
129
SER
148
A
SER
149
n
130
SER
149
A
ILE
150
n
131
ILE
150
A
GLY
151
n
132
GLY
151
A
ASN
152
n
133
ASN
152
A
SER
153
n
134
SER
153
A
ALA
154
n
135
ALA
154
A
THR
155
n
136
THR
155
A
VAL
156
n
137
VAL
156
A
LEU
157
n
138
LEU
157
A
LYS
158
n
139
LYS
158
A
LYS
159
n
140
LYS
159
A
THR
160
n
141
THR
160
A
TYR
161
n
142
TYR
161
A
PRO
162
n
143
PRO
162
A
ASP
163
n
144
ASP
163
A
LEU
164
n
145
LEU
164
A
ASN
165
n
146
ASN
165
A
TRP
166
n
147
TRP
166
A
LYS
167
n
148
LYS
167
A
GLU
168
n
149
GLU
168
A
GLY
169
n
150
GLY
169
A
ARG
170
n
151
ARG
170
A
LEU
171
n
152
LEU
171
A
LEU
172
n
153
LEU
172
A
ASN
173
n
154
ASN
173
A
ARG
174
n
155
ARG
174
A
THR
175
n
156
THR
175
A
ASP
176
n
157
ASP
176
A
GLU
177
n
158
GLU
177
A
LYS
178
n
159
LYS
178
A
ALA
179
n
160
ALA
179
A
ILE
180
n
161
ILE
180
A
ARG
181
n
162
ARG
181
A
ALA
182
n
163
ALA
182
A
TRP
183
n
164
TRP
183
A
LEU
184
n
165
LEU
184
A
ASP
185
n
166
ASP
185
A
VAL
186
n
167
VAL
186
A
ILE
187
n
168
ILE
187
A
ALA
188
n
169
ALA
188
A
VAL
189
n
170
VAL
189
A
LYS
190
n
171
LYS
190
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
88
SELENOMETHIONINE
A
MSE
69
MET
A
MSE
93
SELENOMETHIONINE
A
MSE
74
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASP
60
A
O
ASP
41
A
N
VAL
37
A
N
VAL
18
A
N
LEU
36
A
N
LEU
17
A
O
PHE
111
A
O
PHE
92
A
N
VAL
110
A
N
VAL
91
A
O
THR
138
A
O
THR
119
A
N
VAL
139
A
N
VAL
120
A
O
ASN
165
A
O
ASN
146
A
O
ASP
60
A
O
ASP
41
A
N
VAL
37
A
N
VAL
18
A
N
LEU
36
A
N
LEU
17
A
O
PHE
111
A
O
PHE
92
A
N
VAL
110
A
N
VAL
91
A
O
THR
138
A
O
THR
119
A
N
ALA
143
A
N
ALA
124
A
O
ARG
170
A
O
ARG
151
1
A
CD
LYS
80
A
CD
LYS
61
1
Y
1
A
CE
LYS
80
A
CE
LYS
61
1
Y
1
A
NZ
LYS
80
A
NZ
LYS
61
1
Y
1
A
NE
ARG
81
A
NE
ARG
62
1
Y
1
A
CZ
ARG
81
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
81
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
81
A
NH2
ARG
62
1
Y
1
A
CD
GLU
102
A
CD
GLU
83
1
Y
1
A
OE1
GLU
102
A
OE1
GLU
83
1
Y
1
A
OE2
GLU
102
A
OE2
GLU
83
1
Y
1
A
CD
ARG
174
A
CD
ARG
155
1
Y
1
A
NE
ARG
174
A
NE
ARG
155
1
Y
1
A
CZ
ARG
174
A
CZ
ARG
155
1
Y
1
A
NH1
ARG
174
A
NH1
ARG
155
1
Y
1
A
NH2
ARG
174
A
NH2
ARG
155
1
Y
1
A
CG
LYS
190
A
CG
LYS
171
1
Y
1
A
CD
LYS
190
A
CD
LYS
171
1
Y
1
A
CE
LYS
190
A
CE
LYS
171
1
Y
1
A
NZ
LYS
190
A
NZ
LYS
171
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLN
21
A
GLN
2
1
Y
1
A
GLN
22
A
GLN
3
1
Y
1
A
LYS
23
A
LYS
4
1
Y
1
A
GLN
24
A
GLN
5
1
Y
1
A
LYS
25
A
LYS
6
1
Y
1
A
MSE
26
A
MSE
7
1
Y
1
A
ASN
27
A
ASN
8
1
Y
1
A
SER
28
A
SER
9
1
Y
1
A
LYS
29
A
LYS
10
1
Y
1
A
HIS
30
A
HIS
11
1
Y
1
A
SER
31
A
SER
12
1
Y
58.860
17.7760
7.600
-0.2800
0.0000
0.0000
-0.2800
0.0000
0.5600
0.9820
0.9740
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. HEPES (EPE) AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 4. A FLAVIN MONONUCLEOTIDE (FMN) MOLECULE IS MODELED IN THE ACTIVE SITE BASED ON THE ELECTRON DENSITY. 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED ADJACENT TO THE ISOALLOXAZINE RING OF FMN.
0.1468
0.1147
0.1163
1.4000
29.067
2029
40456
5.0000
97.8300
1.000
0.250
1.3620
0.0240
RANDOM
1
THROUGHOUT
0.000
MAD
0.0420
0.0430
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.4000
29.067
255
1533
64
0
1214
0.014
0.022
1363
0.001
0.020
938
1.622
2.013
1864
1.027
3.000
2310
5.995
5.000
172
33.490
24.167
48
10.655
15.000
221
8.613
15.000
6
0.083
0.200
203
0.008
0.021
1460
0.001
0.020
252
2.419
3.000
816
1.603
3.000
328
3.441
5.000
1326
4.605
8.000
547
6.033
11.000
530
1.906
3.000
2301
7.658
3.000
267
4.230
3.000
2265
0.2620
0.1940
1.4360
143
2821
2964
20
99.1600
12.318
1.40
29.067
4ICI
40475
40475
0.085
1
9.200
3.900
98.400
0.689
1.400
1.440
2.2
11478
2976
0.689
1
3.900
99.500
0.569
1.440
1.480
2.7
11397
2953
0.569
1
3.900
99.500
0.451
1.480
1.520
3.3
11212
2888
0.451
1
3.900
99.300
0.364
1.520
1.570
4.0
10733
2755
0.364
1
3.900
99.000
0.297
1.570
1.620
4.7
10462
2667
0.297
1
3.900
98.800
0.246
1.620
1.670
5.5
10163
2595
0.246
1
3.900
98.600
0.218
1.670
1.740
6.1
9734
2486
0.218
1
3.900
98.600
0.165
1.740
1.810
7.3
9533
2422
0.165
1
3.900
98.300
0.127
1.810
1.890
8.6
8968
2274
0.127
1
3.900
98.300
0.098
1.890
1.980
10.5
8673
2208
0.098
1
3.900
98.200
0.082
1.980
2.090
12.1
8152
2078
0.082
1
3.900
98.300
0.072
2.090
2.210
13.9
7777
1983
0.072
1
3.900
98.400
0.067
2.210
2.370
15.1
7240
1853
0.067
1
3.900
98.100
0.063
2.370
2.560
15.5
6691
1734
0.063
1
3.900
98.100
0.062
2.560
2.800
16.4
6135
1597
0.062
1
3.800
98.000
0.065
2.800
3.130
18.0
5219
1423
0.065
1
3.700
97.700
0.066
3.130
3.610
20.5
4747
1260
0.066
1
3.800
96.500
0.049
3.610
4.430
22.7
4481
1067
0.049
1
4.200
96.800
0.046
4.430
6.260
21.8
3469
822
0.046
1
4.200
95.700
0.046
6.260
29.067
21.9
1843
434
0.046
1
4.200
92.200
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
SCALA
package
3.3.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data reduction
MOSFLM
Crystal structure of a putative flavoprotein (BACEGG_01620) from Bacteroides eggerthii DSM 20697 at 1.40 A resolution
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.
A
GLY
44
A
GLY
25
HELX_P
A
GLY
58
A
GLY
39
1
1
15
A
SER
72
A
SER
53
HELX_P
A
ASP
76
A
ASP
57
5
2
5
A
SER
82
A
SER
63
HELX_P
A
ASP
90
A
ASP
71
1
3
9
A
ASN
103
A
ASN
84
HELX_P
A
TYR
107
A
TYR
88
5
4
5
A
PRO
122
A
PRO
103
HELX_P
A
HIS
132
A
HIS
113
1
5
11
A
ILE
150
A
ILE
131
HELX_P
A
TYR
161
A
TYR
142
1
6
12
A
ASP
176
A
ASP
157
HELX_P
A
ALA
188
A
ALA
169
1
7
13
covale
1.320
both
A
GLU
87
A
C
GLU
68
1_555
A
MSE
88
A
N
MSE
69
1_555
covale
1.335
both
A
MSE
88
A
C
MSE
69
1_555
A
ASN
89
A
N
ASN
70
1_555
covale
1.333
both
A
LYS
92
A
C
LYS
73
1_555
A
MSE
93
A
N
MSE
74
1_555
covale
1.339
both
A
MSE
93
A
C
MSE
74
1_555
A
ARG
94
A
N
ARG
75
1_555
FLAVOPROTEIN
PF12682 family protein, flavodoxin_4, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, FLAVOPROTEIN
B7AGU1_9BACE
UNP
1
21
B7AGU1
QQKQKMNSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSK
KENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNRTDEKAI
RAWLDVIAVK
21
190
4ICI
21
190
B7AGU1
A
1
2
171
1
expression tag
GLY
0
4ICI
A
B7AGU1
UNP
1
5
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
ASP
60
A
ASP
41
A
PRO
63
A
PRO
44
A
ILE
35
A
ILE
16
A
TYR
39
A
TYR
20
A
VAL
109
A
VAL
90
A
PRO
115
A
PRO
96
A
THR
138
A
THR
119
A
THR
144
A
THR
125
A
ASN
165
A
ASN
146
A
TRP
166
A
TRP
147
A
ASP
60
A
ASP
41
A
PRO
63
A
PRO
44
A
ILE
35
A
ILE
16
A
TYR
39
A
TYR
20
A
VAL
109
A
VAL
90
A
PRO
115
A
PRO
96
A
THR
138
A
THR
119
A
THR
144
A
THR
125
A
ARG
170
A
ARG
151
A
LEU
171
A
LEU
152
BINDING SITE FOR RESIDUE FMN A 200
A
FMN
200
Software
25
BINDING SITE FOR RESIDUE EPE A 202
A
EPE
202
Software
16
BINDING SITE FOR RESIDUE EDO A 203
A
EDO
203
Software
6
BINDING SITE FOR RESIDUE EDO A 204
A
EDO
204
Software
6
BINDING SITE FOR RESIDUE EDO A 205
A
EDO
205
Software
6
A
SER
41
A
SER
22
25
1_555
A
ALA
42
A
ALA
23
25
1_555
A
THR
43
A
THR
24
25
1_555
A
GLY
44
A
GLY
25
25
1_555
A
THR
45
A
THR
26
25
1_555
A
THR
46
A
THR
27
25
1_555
A
LEU
75
A
LEU
56
25
1_555
A
TRP
77
A
TRP
58
25
1_555
A
SER
84
A
SER
65
25
1_555
A
PRO
115
A
PRO
96
25
1_555
A
ILE
116
A
ILE
97
25
1_555
A
TRP
117
A
TRP
98
25
1_555
A
TRP
118
A
TRP
99
25
1_555
A
ASP
119
A
ASP
100
25
1_555
A
THR
144
A
THR
125
25
1_555
A
SER
145
A
SER
126
25
1_555
A
GLY
146
A
GLY
127
25
1_555
A
GLY
147
A
GLY
128
25
1_555
A
SER
148
A
SER
129
25
1_555
A
HOH
328
H
HOH
25
1_555
A
HOH
385
H
HOH
25
1_555
A
HOH
474
H
HOH
25
1_555
A
HOH
494
H
HOH
25
1_555
A
HOH
503
H
HOH
25
1_555
A
HOH
507
H
HOH
25
1_555
A
GLN
68
A
GLN
49
16
1_555
A
ARG
83
A
ARG
64
16
1_555
A
MSE
88
A
MSE
69
16
7_554
A
PRO
91
A
PRO
72
16
7_554
A
PRO
95
A
PRO
76
16
1_555
A
ALA
96
A
ALA
77
16
1_555
A
TRP
118
A
TRP
99
16
7_554
A
LEU
120
A
LEU
101
16
7_554
A
EDO
204
F
EDO
16
7_554
A
HOH
314
H
HOH
16
1_555
A
HOH
335
H
HOH
16
1_555
A
HOH
446
H
HOH
16
7_554
A
HOH
479
H
HOH
16
1_555
A
HOH
508
H
HOH
16
7_554
A
HOH
554
H
HOH
16
1_555
A
HOH
555
H
HOH
16
1_555
A
PHE
40
A
PHE
21
6
1_555
A
SER
41
A
SER
22
6
1_555
A
PRO
63
A
PRO
44
6
1_555
A
ILE
64
A
ILE
45
6
1_555
A
ALA
65
A
ALA
46
6
1_555
A
HOH
338
H
HOH
6
1_555
A
SER
85
A
SER
66
6
1_555
A
MSE
88
A
MSE
69
6
1_555
A
ASN
89
A
ASN
70
6
1_555
A
TRP
118
A
TRP
99
6
1_555
A
EPE
202
D
EPE
6
8_555
A
HOH
543
H
HOH
6
1_555
A
TYR
39
A
TYR
20
6
1_555
A
ALA
47
A
ALA
28
6
1_555
A
VAL
186
A
VAL
167
6
4_564
A
HOH
356
H
HOH
6
1_555
A
HOH
370
H
HOH
6
4_564
A
HOH
448
H
HOH
6
4_564
80
I 41