0.011679 0.000000 0.000000 0.000000 0.011679 0.000000 0.000000 0.000000 0.017202 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 85.625 85.625 58.134 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN LIGAND non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a putative flavoprotein (BACEGG_01620) from Bacteroides eggerthii DSM 20697 at 1.40 A resolution 10.2210/pdb4ici/pdb pdb_00004ici 100 1 KOHZU: Double Crystal Si(111) CCD 2012-11-21 ADSC QUANTUM 315 Double Crystal Si(111) MAD M x-ray 1 0.918401 1.0 0.979493 1.0 0.979199 1.0 8.2.2 ALS 0.918401,0.979493,0.979199 SYNCHROTRON ALS BEAMLINE 8.2.2 18994.205 Putative flavoprotein UNP residues 21-190 1 man polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer UNKNOWN LIGAND 1 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 62.068 1,2-ETHANEDIOL 3 syn non-polymer 18.015 water 255 nat water no yes GQQKQK(MSE)NSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVE(MSE)NDP K(MSE)RPAIKSKKENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWK EGRLLNRTDEKAIRAWLDVIAVK GQQKQKMNSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKS KKENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNRTDEKA IRAWLDVIAVK A JCSG-417707 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n DSM 20697 sample BACEGG_01620, ZP_03458840.1 483216 Bacteroides eggerthii 562 Escherichia coli PB1 Plasmid SpeedET 1 2.80 56.15 VAPOR DIFFUSION, SITTING DROP 7.5 1.40M tri-Sodium Citrate, 0.1M sodium HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI:Biology software database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Derived calculations 1 0 2013-01-02 1 1 2017-11-15 1 2 2023-02-01 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-12-10 REL REL FMN FLAVIN MONONUCLEOTIDE UNL UNKNOWN LIGAND EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID EDO 1,2-ETHANEDIOL HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 21-190 OF THE TARGET SEQUENCE. FMN 200 2 FMN FMN 200 A UNL 201 3 UNL UNL 201 A EPE 202 4 EPE EPE 202 A EDO 203 5 EDO EDO 203 A EDO 204 5 EDO EDO 204 A EDO 205 5 EDO EDO 205 A HOH 206 6 HOH HOH 301 A HOH 207 6 HOH HOH 302 A HOH 208 6 HOH HOH 303 A HOH 209 6 HOH HOH 304 A HOH 210 6 HOH HOH 305 A HOH 211 6 HOH HOH 306 A HOH 212 6 HOH HOH 307 A HOH 213 6 HOH HOH 308 A HOH 214 6 HOH HOH 309 A HOH 215 6 HOH HOH 310 A HOH 216 6 HOH HOH 311 A HOH 217 6 HOH HOH 312 A HOH 218 6 HOH HOH 313 A HOH 219 6 HOH HOH 314 A HOH 220 6 HOH HOH 315 A HOH 221 6 HOH HOH 316 A HOH 222 6 HOH HOH 317 A HOH 223 6 HOH HOH 318 A HOH 224 6 HOH HOH 319 A HOH 225 6 HOH HOH 320 A HOH 226 6 HOH HOH 321 A HOH 227 6 HOH HOH 322 A HOH 228 6 HOH HOH 323 A HOH 229 6 HOH HOH 324 A HOH 230 6 HOH HOH 325 A HOH 231 6 HOH HOH 326 A HOH 232 6 HOH HOH 327 A HOH 233 6 HOH HOH 328 A HOH 234 6 HOH HOH 329 A HOH 235 6 HOH HOH 330 A HOH 236 6 HOH HOH 331 A HOH 237 6 HOH HOH 332 A HOH 238 6 HOH HOH 333 A HOH 239 6 HOH HOH 334 A HOH 240 6 HOH HOH 335 A HOH 241 6 HOH HOH 336 A HOH 242 6 HOH HOH 337 A HOH 243 6 HOH HOH 338 A HOH 244 6 HOH HOH 339 A HOH 245 6 HOH HOH 340 A HOH 246 6 HOH HOH 341 A HOH 247 6 HOH HOH 342 A HOH 248 6 HOH HOH 343 A HOH 249 6 HOH HOH 344 A HOH 250 6 HOH HOH 345 A HOH 251 6 HOH HOH 346 A HOH 252 6 HOH HOH 347 A HOH 253 6 HOH HOH 348 A HOH 254 6 HOH HOH 349 A HOH 255 6 HOH HOH 350 A HOH 256 6 HOH HOH 351 A HOH 257 6 HOH HOH 352 A HOH 258 6 HOH HOH 353 A HOH 259 6 HOH HOH 354 A HOH 260 6 HOH HOH 355 A HOH 261 6 HOH HOH 356 A HOH 262 6 HOH HOH 357 A HOH 263 6 HOH HOH 358 A HOH 264 6 HOH HOH 359 A HOH 265 6 HOH HOH 360 A HOH 266 6 HOH HOH 361 A HOH 267 6 HOH HOH 362 A HOH 268 6 HOH HOH 363 A HOH 269 6 HOH HOH 364 A HOH 270 6 HOH HOH 365 A HOH 271 6 HOH HOH 366 A HOH 272 6 HOH HOH 367 A HOH 273 6 HOH HOH 368 A HOH 274 6 HOH HOH 369 A HOH 275 6 HOH HOH 370 A HOH 276 6 HOH HOH 371 A HOH 277 6 HOH HOH 372 A HOH 278 6 HOH HOH 373 A HOH 279 6 HOH HOH 374 A HOH 280 6 HOH HOH 375 A HOH 281 6 HOH HOH 376 A HOH 282 6 HOH HOH 377 A HOH 283 6 HOH HOH 378 A HOH 284 6 HOH HOH 379 A HOH 285 6 HOH HOH 380 A HOH 286 6 HOH HOH 381 A HOH 287 6 HOH HOH 382 A HOH 288 6 HOH HOH 383 A HOH 289 6 HOH HOH 384 A HOH 290 6 HOH HOH 385 A HOH 291 6 HOH HOH 386 A HOH 292 6 HOH HOH 387 A HOH 293 6 HOH HOH 388 A HOH 294 6 HOH HOH 389 A HOH 295 6 HOH HOH 390 A HOH 296 6 HOH HOH 391 A HOH 297 6 HOH HOH 392 A HOH 298 6 HOH HOH 393 A HOH 299 6 HOH HOH 394 A HOH 300 6 HOH HOH 395 A HOH 301 6 HOH HOH 396 A HOH 302 6 HOH HOH 397 A HOH 303 6 HOH HOH 398 A HOH 304 6 HOH HOH 399 A HOH 305 6 HOH HOH 400 A HOH 306 6 HOH HOH 401 A HOH 307 6 HOH HOH 402 A HOH 308 6 HOH HOH 403 A HOH 309 6 HOH HOH 404 A HOH 310 6 HOH HOH 405 A HOH 311 6 HOH HOH 406 A HOH 312 6 HOH HOH 407 A HOH 313 6 HOH HOH 408 A HOH 314 6 HOH HOH 409 A HOH 315 6 HOH HOH 410 A HOH 316 6 HOH HOH 411 A HOH 317 6 HOH HOH 412 A HOH 318 6 HOH HOH 413 A HOH 319 6 HOH HOH 414 A HOH 320 6 HOH HOH 415 A HOH 321 6 HOH HOH 416 A HOH 322 6 HOH HOH 417 A HOH 323 6 HOH HOH 418 A HOH 324 6 HOH HOH 419 A HOH 325 6 HOH HOH 420 A HOH 326 6 HOH HOH 421 A HOH 327 6 HOH HOH 422 A HOH 328 6 HOH HOH 423 A HOH 329 6 HOH HOH 424 A HOH 330 6 HOH HOH 425 A HOH 331 6 HOH HOH 426 A HOH 332 6 HOH HOH 427 A HOH 333 6 HOH HOH 428 A HOH 334 6 HOH HOH 429 A HOH 335 6 HOH HOH 430 A HOH 336 6 HOH HOH 431 A HOH 337 6 HOH HOH 432 A HOH 338 6 HOH HOH 433 A HOH 339 6 HOH HOH 434 A HOH 340 6 HOH HOH 435 A HOH 341 6 HOH HOH 436 A HOH 342 6 HOH HOH 437 A HOH 343 6 HOH HOH 438 A HOH 344 6 HOH HOH 439 A HOH 345 6 HOH HOH 440 A HOH 346 6 HOH HOH 441 A HOH 347 6 HOH HOH 442 A HOH 348 6 HOH HOH 443 A HOH 349 6 HOH HOH 444 A HOH 350 6 HOH HOH 445 A HOH 351 6 HOH HOH 446 A HOH 352 6 HOH HOH 447 A HOH 353 6 HOH HOH 448 A HOH 354 6 HOH HOH 449 A HOH 355 6 HOH HOH 450 A HOH 356 6 HOH HOH 451 A HOH 357 6 HOH HOH 452 A HOH 358 6 HOH HOH 453 A HOH 359 6 HOH HOH 454 A HOH 360 6 HOH HOH 455 A HOH 361 6 HOH HOH 456 A HOH 362 6 HOH HOH 457 A HOH 363 6 HOH HOH 458 A HOH 364 6 HOH HOH 459 A HOH 365 6 HOH HOH 460 A HOH 366 6 HOH HOH 461 A HOH 367 6 HOH HOH 462 A HOH 368 6 HOH HOH 463 A HOH 369 6 HOH HOH 464 A HOH 370 6 HOH HOH 465 A HOH 371 6 HOH HOH 466 A HOH 372 6 HOH HOH 467 A HOH 373 6 HOH HOH 468 A HOH 374 6 HOH HOH 469 A HOH 375 6 HOH HOH 470 A HOH 376 6 HOH HOH 471 A HOH 377 6 HOH HOH 472 A HOH 378 6 HOH HOH 473 A HOH 379 6 HOH HOH 474 A HOH 380 6 HOH HOH 475 A HOH 381 6 HOH HOH 476 A HOH 382 6 HOH HOH 477 A HOH 383 6 HOH HOH 478 A HOH 384 6 HOH HOH 479 A HOH 385 6 HOH HOH 480 A HOH 386 6 HOH HOH 481 A HOH 387 6 HOH HOH 482 A HOH 388 6 HOH HOH 483 A HOH 389 6 HOH HOH 484 A HOH 390 6 HOH HOH 485 A HOH 391 6 HOH HOH 486 A HOH 392 6 HOH HOH 487 A HOH 393 6 HOH HOH 488 A HOH 394 6 HOH HOH 489 A HOH 395 6 HOH HOH 490 A HOH 396 6 HOH HOH 491 A HOH 397 6 HOH HOH 492 A HOH 398 6 HOH HOH 493 A HOH 399 6 HOH HOH 494 A HOH 400 6 HOH HOH 495 A HOH 401 6 HOH HOH 496 A HOH 402 6 HOH HOH 497 A HOH 403 6 HOH HOH 498 A HOH 404 6 HOH HOH 499 A HOH 405 6 HOH HOH 500 A HOH 406 6 HOH HOH 501 A HOH 407 6 HOH HOH 502 A HOH 408 6 HOH HOH 503 A HOH 409 6 HOH HOH 504 A HOH 410 6 HOH HOH 505 A HOH 411 6 HOH HOH 506 A HOH 412 6 HOH HOH 507 A HOH 413 6 HOH HOH 508 A HOH 414 6 HOH HOH 509 A HOH 415 6 HOH HOH 510 A HOH 416 6 HOH HOH 511 A HOH 417 6 HOH HOH 512 A HOH 418 6 HOH HOH 513 A HOH 419 6 HOH HOH 514 A HOH 420 6 HOH HOH 515 A HOH 421 6 HOH HOH 516 A HOH 422 6 HOH HOH 517 A HOH 423 6 HOH HOH 518 A HOH 424 6 HOH HOH 519 A HOH 425 6 HOH HOH 520 A HOH 426 6 HOH HOH 521 A HOH 427 6 HOH HOH 522 A HOH 428 6 HOH HOH 523 A HOH 429 6 HOH HOH 524 A HOH 430 6 HOH HOH 525 A HOH 431 6 HOH HOH 526 A HOH 432 6 HOH HOH 527 A HOH 433 6 HOH HOH 528 A HOH 434 6 HOH HOH 529 A HOH 435 6 HOH HOH 530 A HOH 436 6 HOH HOH 531 A HOH 437 6 HOH HOH 532 A HOH 438 6 HOH HOH 533 A HOH 439 6 HOH HOH 534 A HOH 440 6 HOH HOH 535 A HOH 441 6 HOH HOH 536 A HOH 442 6 HOH HOH 537 A HOH 443 6 HOH HOH 538 A HOH 444 6 HOH HOH 539 A HOH 445 6 HOH HOH 540 A HOH 446 6 HOH HOH 541 A HOH 447 6 HOH HOH 542 A HOH 448 6 HOH HOH 543 A HOH 449 6 HOH HOH 544 A HOH 450 6 HOH HOH 545 A HOH 451 6 HOH HOH 546 A HOH 452 6 HOH HOH 547 A HOH 453 6 HOH HOH 548 A HOH 454 6 HOH HOH 549 A HOH 455 6 HOH HOH 550 A HOH 456 6 HOH HOH 551 A HOH 457 6 HOH HOH 552 A HOH 458 6 HOH HOH 553 A HOH 459 6 HOH HOH 554 A HOH 460 6 HOH HOH 555 A n 1 0 A n 2 21 A n 3 22 A n 4 23 A n 5 24 A n 6 25 A n 7 26 A n 8 27 A n 9 28 A n 10 29 A n 11 30 A n 12 31 A ASN 32 n 13 ASN 32 A SER 33 n 14 SER 33 A LYS 34 n 15 LYS 34 A ILE 35 n 16 ILE 35 A LEU 36 n 17 LEU 36 A VAL 37 n 18 VAL 37 A ALA 38 n 19 ALA 38 A TYR 39 n 20 TYR 39 A PHE 40 n 21 PHE 40 A SER 41 n 22 SER 41 A ALA 42 n 23 ALA 42 A THR 43 n 24 THR 43 A GLY 44 n 25 GLY 44 A THR 45 n 26 THR 45 A THR 46 n 27 THR 46 A ALA 47 n 28 ALA 47 A ARG 48 n 29 ARG 48 A ALA 49 n 30 ALA 49 A ALA 50 n 31 ALA 50 A GLU 51 n 32 GLU 51 A LYS 52 n 33 LYS 52 A LEU 53 n 34 LEU 53 A GLY 54 n 35 GLY 54 A ALA 55 n 36 ALA 55 A ALA 56 n 37 ALA 56 A VAL 57 n 38 VAL 57 A GLY 58 n 39 GLY 58 A GLY 59 n 40 GLY 59 A ASP 60 n 41 ASP 60 A LEU 61 n 42 LEU 61 A TYR 62 n 43 TYR 62 A PRO 63 n 44 PRO 63 A ILE 64 n 45 ILE 64 A ALA 65 n 46 ALA 65 A PRO 66 n 47 PRO 66 A ALA 67 n 48 ALA 67 A GLN 68 n 49 GLN 68 A PRO 69 n 50 PRO 69 A TYR 70 n 51 TYR 70 A THR 71 n 52 THR 71 A SER 72 n 53 SER 72 A ALA 73 n 54 ALA 73 A ASP 74 n 55 ASP 74 A LEU 75 n 56 LEU 75 A ASP 76 n 57 ASP 76 A TRP 77 n 58 TRP 77 A ASN 78 n 59 ASN 78 A ASN 79 n 60 ASN 79 A LYS 80 n 61 LYS 80 A ARG 81 n 62 ARG 81 A SER 82 n 63 SER 82 A ARG 83 n 64 ARG 83 A SER 84 n 65 SER 84 A SER 85 n 66 SER 85 A VAL 86 n 67 VAL 86 A GLU 87 n 68 GLU 87 A MSE 88 n 69 MSE 88 A ASN 89 n 70 ASN 89 A ASP 90 n 71 ASP 90 A PRO 91 n 72 PRO 91 A LYS 92 n 73 LYS 92 A MSE 93 n 74 MSE 93 A ARG 94 n 75 ARG 94 A PRO 95 n 76 PRO 95 A ALA 96 n 77 ALA 96 A ILE 97 n 78 ILE 97 A LYS 98 n 79 LYS 98 A SER 99 n 80 SER 99 A LYS 100 n 81 LYS 100 A LYS 101 n 82 LYS 101 A GLU 102 n 83 GLU 102 A ASN 103 n 84 ASN 103 A ILE 104 n 85 ILE 104 A GLY 105 n 86 GLY 105 A THR 106 n 87 THR 106 A TYR 107 n 88 TYR 107 A ASP 108 n 89 ASP 108 A VAL 109 n 90 VAL 109 A VAL 110 n 91 VAL 110 A PHE 111 n 92 PHE 111 A ILE 112 n 93 ILE 112 A GLY 113 n 94 GLY 113 A TYR 114 n 95 TYR 114 A PRO 115 n 96 PRO 115 A ILE 116 n 97 ILE 116 A TRP 117 n 98 TRP 117 A TRP 118 n 99 TRP 118 A ASP 119 n 100 ASP 119 A LEU 120 n 101 LEU 120 A ALA 121 n 102 ALA 121 A PRO 122 n 103 PRO 122 A ARG 123 n 104 ARG 123 A ILE 124 n 105 ILE 124 A ILE 125 n 106 ILE 125 A ASN 126 n 107 ASN 126 A THR 127 n 108 THR 127 A PHE 128 n 109 PHE 128 A ILE 129 n 110 ILE 129 A GLU 130 n 111 GLU 130 A GLY 131 n 112 GLY 131 A HIS 132 n 113 HIS 132 A SER 133 n 114 SER 133 A LEU 134 n 115 LEU 134 A LYS 135 n 116 LYS 135 A GLY 136 n 117 GLY 136 A LYS 137 n 118 LYS 137 A THR 138 n 119 THR 138 A VAL 139 n 120 VAL 139 A VAL 140 n 121 VAL 140 A PRO 141 n 122 PRO 141 A PHE 142 n 123 PHE 142 A ALA 143 n 124 ALA 143 A THR 144 n 125 THR 144 A SER 145 n 126 SER 145 A GLY 146 n 127 GLY 146 A GLY 147 n 128 GLY 147 A SER 148 n 129 SER 148 A SER 149 n 130 SER 149 A ILE 150 n 131 ILE 150 A GLY 151 n 132 GLY 151 A ASN 152 n 133 ASN 152 A SER 153 n 134 SER 153 A ALA 154 n 135 ALA 154 A THR 155 n 136 THR 155 A VAL 156 n 137 VAL 156 A LEU 157 n 138 LEU 157 A LYS 158 n 139 LYS 158 A LYS 159 n 140 LYS 159 A THR 160 n 141 THR 160 A TYR 161 n 142 TYR 161 A PRO 162 n 143 PRO 162 A ASP 163 n 144 ASP 163 A LEU 164 n 145 LEU 164 A ASN 165 n 146 ASN 165 A TRP 166 n 147 TRP 166 A LYS 167 n 148 LYS 167 A GLU 168 n 149 GLU 168 A GLY 169 n 150 GLY 169 A ARG 170 n 151 ARG 170 A LEU 171 n 152 LEU 171 A LEU 172 n 153 LEU 172 A ASN 173 n 154 ASN 173 A ARG 174 n 155 ARG 174 A THR 175 n 156 THR 175 A ASP 176 n 157 ASP 176 A GLU 177 n 158 GLU 177 A LYS 178 n 159 LYS 178 A ALA 179 n 160 ALA 179 A ILE 180 n 161 ILE 180 A ARG 181 n 162 ARG 181 A ALA 182 n 163 ALA 182 A TRP 183 n 164 TRP 183 A LEU 184 n 165 LEU 184 A ASP 185 n 166 ASP 185 A VAL 186 n 167 VAL 186 A ILE 187 n 168 ILE 187 A ALA 188 n 169 ALA 188 A VAL 189 n 170 VAL 189 A LYS 190 n 171 LYS 190 A author_and_software_defined_assembly PISA 1 monomeric A MSE 88 SELENOMETHIONINE A MSE 69 MET A MSE 93 SELENOMETHIONINE A MSE 74 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 60 A O ASP 41 A N VAL 37 A N VAL 18 A N LEU 36 A N LEU 17 A O PHE 111 A O PHE 92 A N VAL 110 A N VAL 91 A O THR 138 A O THR 119 A N VAL 139 A N VAL 120 A O ASN 165 A O ASN 146 A O ASP 60 A O ASP 41 A N VAL 37 A N VAL 18 A N LEU 36 A N LEU 17 A O PHE 111 A O PHE 92 A N VAL 110 A N VAL 91 A O THR 138 A O THR 119 A N ALA 143 A N ALA 124 A O ARG 170 A O ARG 151 1 A CD LYS 80 A CD LYS 61 1 Y 1 A CE LYS 80 A CE LYS 61 1 Y 1 A NZ LYS 80 A NZ LYS 61 1 Y 1 A NE ARG 81 A NE ARG 62 1 Y 1 A CZ ARG 81 A CZ ARG 62 1 Y 1 A NH1 ARG 81 A NH1 ARG 62 1 Y 1 A NH2 ARG 81 A NH2 ARG 62 1 Y 1 A CD GLU 102 A CD GLU 83 1 Y 1 A OE1 GLU 102 A OE1 GLU 83 1 Y 1 A OE2 GLU 102 A OE2 GLU 83 1 Y 1 A CD ARG 174 A CD ARG 155 1 Y 1 A NE ARG 174 A NE ARG 155 1 Y 1 A CZ ARG 174 A CZ ARG 155 1 Y 1 A NH1 ARG 174 A NH1 ARG 155 1 Y 1 A NH2 ARG 174 A NH2 ARG 155 1 Y 1 A CG LYS 190 A CG LYS 171 1 Y 1 A CD LYS 190 A CD LYS 171 1 Y 1 A CE LYS 190 A CE LYS 171 1 Y 1 A NZ LYS 190 A NZ LYS 171 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A GLN 21 A GLN 2 1 Y 1 A GLN 22 A GLN 3 1 Y 1 A LYS 23 A LYS 4 1 Y 1 A GLN 24 A GLN 5 1 Y 1 A LYS 25 A LYS 6 1 Y 1 A MSE 26 A MSE 7 1 Y 1 A ASN 27 A ASN 8 1 Y 1 A SER 28 A SER 9 1 Y 1 A LYS 29 A LYS 10 1 Y 1 A HIS 30 A HIS 11 1 Y 1 A SER 31 A SER 12 1 Y 58.860 17.7760 7.600 -0.2800 0.0000 0.0000 -0.2800 0.0000 0.5600 0.9820 0.9740 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. HEPES (EPE) AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 4. A FLAVIN MONONUCLEOTIDE (FMN) MOLECULE IS MODELED IN THE ACTIVE SITE BASED ON THE ELECTRON DENSITY. 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED ADJACENT TO THE ISOALLOXAZINE RING OF FMN. 0.1468 0.1147 0.1163 1.4000 29.067 2029 40456 5.0000 97.8300 1.000 0.250 1.3620 0.0240 RANDOM 1 THROUGHOUT 0.000 MAD 0.0420 0.0430 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.4000 29.067 255 1533 64 0 1214 0.014 0.022 1363 0.001 0.020 938 1.622 2.013 1864 1.027 3.000 2310 5.995 5.000 172 33.490 24.167 48 10.655 15.000 221 8.613 15.000 6 0.083 0.200 203 0.008 0.021 1460 0.001 0.020 252 2.419 3.000 816 1.603 3.000 328 3.441 5.000 1326 4.605 8.000 547 6.033 11.000 530 1.906 3.000 2301 7.658 3.000 267 4.230 3.000 2265 0.2620 0.1940 1.4360 143 2821 2964 20 99.1600 12.318 1.40 29.067 4ICI 40475 40475 0.085 1 9.200 3.900 98.400 0.689 1.400 1.440 2.2 11478 2976 0.689 1 3.900 99.500 0.569 1.440 1.480 2.7 11397 2953 0.569 1 3.900 99.500 0.451 1.480 1.520 3.3 11212 2888 0.451 1 3.900 99.300 0.364 1.520 1.570 4.0 10733 2755 0.364 1 3.900 99.000 0.297 1.570 1.620 4.7 10462 2667 0.297 1 3.900 98.800 0.246 1.620 1.670 5.5 10163 2595 0.246 1 3.900 98.600 0.218 1.670 1.740 6.1 9734 2486 0.218 1 3.900 98.600 0.165 1.740 1.810 7.3 9533 2422 0.165 1 3.900 98.300 0.127 1.810 1.890 8.6 8968 2274 0.127 1 3.900 98.300 0.098 1.890 1.980 10.5 8673 2208 0.098 1 3.900 98.200 0.082 1.980 2.090 12.1 8152 2078 0.082 1 3.900 98.300 0.072 2.090 2.210 13.9 7777 1983 0.072 1 3.900 98.400 0.067 2.210 2.370 15.1 7240 1853 0.067 1 3.900 98.100 0.063 2.370 2.560 15.5 6691 1734 0.063 1 3.900 98.100 0.062 2.560 2.800 16.4 6135 1597 0.062 1 3.800 98.000 0.065 2.800 3.130 18.0 5219 1423 0.065 1 3.700 97.700 0.066 3.130 3.610 20.5 4747 1260 0.066 1 3.800 96.500 0.049 3.610 4.430 22.7 4481 1067 0.049 1 4.200 96.800 0.046 4.430 6.260 21.8 3469 822 0.046 1 4.200 95.700 0.046 6.260 29.067 21.9 1843 434 0.046 1 4.200 92.200 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program data scaling Phil Evans pre@mrc-lmb.cam.ac.uk SCALA package 3.3.20 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data reduction MOSFLM Crystal structure of a putative flavoprotein (BACEGG_01620) from Bacteroides eggerthii DSM 20697 at 1.40 A resolution 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A GLY 44 A GLY 25 HELX_P A GLY 58 A GLY 39 1 1 15 A SER 72 A SER 53 HELX_P A ASP 76 A ASP 57 5 2 5 A SER 82 A SER 63 HELX_P A ASP 90 A ASP 71 1 3 9 A ASN 103 A ASN 84 HELX_P A TYR 107 A TYR 88 5 4 5 A PRO 122 A PRO 103 HELX_P A HIS 132 A HIS 113 1 5 11 A ILE 150 A ILE 131 HELX_P A TYR 161 A TYR 142 1 6 12 A ASP 176 A ASP 157 HELX_P A ALA 188 A ALA 169 1 7 13 covale 1.320 both A GLU 87 A C GLU 68 1_555 A MSE 88 A N MSE 69 1_555 covale 1.335 both A MSE 88 A C MSE 69 1_555 A ASN 89 A N ASN 70 1_555 covale 1.333 both A LYS 92 A C LYS 73 1_555 A MSE 93 A N MSE 74 1_555 covale 1.339 both A MSE 93 A C MSE 74 1_555 A ARG 94 A N ARG 75 1_555 FLAVOPROTEIN PF12682 family protein, flavodoxin_4, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, FLAVOPROTEIN B7AGU1_9BACE UNP 1 21 B7AGU1 QQKQKMNSKHSNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSK KENIGTYDVVFIGYPIWWDLAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNRTDEKAI RAWLDVIAVK 21 190 4ICI 21 190 B7AGU1 A 1 2 171 1 expression tag GLY 0 4ICI A B7AGU1 UNP 1 5 5 parallel parallel parallel parallel parallel parallel parallel parallel A ASP 60 A ASP 41 A PRO 63 A PRO 44 A ILE 35 A ILE 16 A TYR 39 A TYR 20 A VAL 109 A VAL 90 A PRO 115 A PRO 96 A THR 138 A THR 119 A THR 144 A THR 125 A ASN 165 A ASN 146 A TRP 166 A TRP 147 A ASP 60 A ASP 41 A PRO 63 A PRO 44 A ILE 35 A ILE 16 A TYR 39 A TYR 20 A VAL 109 A VAL 90 A PRO 115 A PRO 96 A THR 138 A THR 119 A THR 144 A THR 125 A ARG 170 A ARG 151 A LEU 171 A LEU 152 BINDING SITE FOR RESIDUE FMN A 200 A FMN 200 Software 25 BINDING SITE FOR RESIDUE EPE A 202 A EPE 202 Software 16 BINDING SITE FOR RESIDUE EDO A 203 A EDO 203 Software 6 BINDING SITE FOR RESIDUE EDO A 204 A EDO 204 Software 6 BINDING SITE FOR RESIDUE EDO A 205 A EDO 205 Software 6 A SER 41 A SER 22 25 1_555 A ALA 42 A ALA 23 25 1_555 A THR 43 A THR 24 25 1_555 A GLY 44 A GLY 25 25 1_555 A THR 45 A THR 26 25 1_555 A THR 46 A THR 27 25 1_555 A LEU 75 A LEU 56 25 1_555 A TRP 77 A TRP 58 25 1_555 A SER 84 A SER 65 25 1_555 A PRO 115 A PRO 96 25 1_555 A ILE 116 A ILE 97 25 1_555 A TRP 117 A TRP 98 25 1_555 A TRP 118 A TRP 99 25 1_555 A ASP 119 A ASP 100 25 1_555 A THR 144 A THR 125 25 1_555 A SER 145 A SER 126 25 1_555 A GLY 146 A GLY 127 25 1_555 A GLY 147 A GLY 128 25 1_555 A SER 148 A SER 129 25 1_555 A HOH 328 H HOH 25 1_555 A HOH 385 H HOH 25 1_555 A HOH 474 H HOH 25 1_555 A HOH 494 H HOH 25 1_555 A HOH 503 H HOH 25 1_555 A HOH 507 H HOH 25 1_555 A GLN 68 A GLN 49 16 1_555 A ARG 83 A ARG 64 16 1_555 A MSE 88 A MSE 69 16 7_554 A PRO 91 A PRO 72 16 7_554 A PRO 95 A PRO 76 16 1_555 A ALA 96 A ALA 77 16 1_555 A TRP 118 A TRP 99 16 7_554 A LEU 120 A LEU 101 16 7_554 A EDO 204 F EDO 16 7_554 A HOH 314 H HOH 16 1_555 A HOH 335 H HOH 16 1_555 A HOH 446 H HOH 16 7_554 A HOH 479 H HOH 16 1_555 A HOH 508 H HOH 16 7_554 A HOH 554 H HOH 16 1_555 A HOH 555 H HOH 16 1_555 A PHE 40 A PHE 21 6 1_555 A SER 41 A SER 22 6 1_555 A PRO 63 A PRO 44 6 1_555 A ILE 64 A ILE 45 6 1_555 A ALA 65 A ALA 46 6 1_555 A HOH 338 H HOH 6 1_555 A SER 85 A SER 66 6 1_555 A MSE 88 A MSE 69 6 1_555 A ASN 89 A ASN 70 6 1_555 A TRP 118 A TRP 99 6 1_555 A EPE 202 D EPE 6 8_555 A HOH 543 H HOH 6 1_555 A TYR 39 A TYR 20 6 1_555 A ALA 47 A ALA 28 6 1_555 A VAL 186 A VAL 167 6 4_564 A HOH 356 H HOH 6 1_555 A HOH 370 H HOH 6 4_564 A HOH 448 H HOH 6 4_564 80 I 41