0.014869 0.000000 0.007678 0.000000 0.013437 0.000000 0.000000 0.000000 0.015805 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 117.310 90.000 67.254 74.421 71.206 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a hypothetical protein (BACOVA_05496) from Bacteroides ovatus ATCC 8483 at 2.15 A resolution 10.2210/pdb4id2/pdb pdb_00004id2 100 1 KOHZU: Double Crystal Si(111) CCD 2012-10-18 ADSC QUANTUM 315 Double Crystal Si(111) MAD M x-ray 1 0.918401 1.0 0.979485 1.0 0.979268 1.0 8.2.2 ALS 0.918401, 0.979485, 0.979268 SYNCHROTRON ALS BEAMLINE 8.2.2 18471.895 Uncharacterized protein 2 man polymer 96.063 SULFATE ION 1 syn non-polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 18.015 water 109 nat water no yes GCGGKKGSSDNTSTLA(MSE)IDSVDAHGLQR(MSE)QTSKSETDFKFKGKDYHSLVSRTPDDNLPHVTNELGDTYVDNK IVLHLTRGNETVLNKTFTKNDFSSVVDANFLSKSILEGIVYDKTTPQGIVYAASVCYPQTDLY(MSE)PLSITITADGK (MSE)SIQKVDILEEDYDDEAPN GCGGKKGSSDNTSTLAMIDSVDAHGLQRMQTSKSETDFKFKGKDYHSLVSRTPDDNLPHVTNELGDTYVDNKIVLHLTRG NETVLNKTFTKNDFSSVVDANFLSKSILEGIVYDKTTPQGIVYAASVCYPQTDLYMPLSITITADGKMSIQKVDILEEDY DDEAPN A,B JCSG-416984 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 8483 sample 411476 Bacteroides ovatus 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.14 42.60 VAPOR DIFFUSION, SITTING DROP 2.0 M ammonium sulfate, 0.01 M TCEP Hydrochloride, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI:Biology software database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Structure summary Refinement description Database references Derived calculations 1 0 2013-02-13 1 1 2014-12-24 1 2 2017-11-15 1 3 2023-02-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-12-11 REL REL SO4 SULFATE ION EDO 1,2-ETHANEDIOL HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 19-183 OF THE TARGET SEQUENCE. SO4 200 2 SO4 SO4 201 A EDO 202 3 EDO EDO 202 A EDO 201 3 EDO EDO 201 B HOH 203 4 HOH HOH 301 A HOH 206 4 HOH HOH 302 A HOH 207 4 HOH HOH 303 A HOH 209 4 HOH HOH 304 A HOH 210 4 HOH HOH 305 A HOH 211 4 HOH HOH 306 A HOH 212 4 HOH HOH 307 A HOH 213 4 HOH HOH 308 A HOH 215 4 HOH HOH 309 A HOH 218 4 HOH HOH 310 A HOH 220 4 HOH HOH 311 A HOH 222 4 HOH HOH 312 A HOH 223 4 HOH HOH 313 A HOH 224 4 HOH HOH 314 A HOH 235 4 HOH HOH 315 A HOH 237 4 HOH HOH 316 A HOH 239 4 HOH HOH 317 A HOH 240 4 HOH HOH 318 A HOH 243 4 HOH HOH 319 A HOH 246 4 HOH HOH 320 A HOH 251 4 HOH HOH 321 A HOH 252 4 HOH HOH 322 A HOH 253 4 HOH HOH 323 A HOH 254 4 HOH HOH 324 A HOH 257 4 HOH HOH 325 A HOH 260 4 HOH HOH 326 A HOH 265 4 HOH HOH 327 A HOH 266 4 HOH HOH 328 A HOH 268 4 HOH HOH 329 A HOH 270 4 HOH HOH 330 A HOH 273 4 HOH HOH 331 A HOH 274 4 HOH HOH 332 A HOH 275 4 HOH HOH 333 A HOH 276 4 HOH HOH 334 A HOH 277 4 HOH HOH 335 A HOH 279 4 HOH HOH 336 A HOH 280 4 HOH HOH 337 A HOH 284 4 HOH HOH 338 A HOH 287 4 HOH HOH 339 A HOH 288 4 HOH HOH 340 A HOH 290 4 HOH HOH 341 A HOH 291 4 HOH HOH 342 A HOH 294 4 HOH HOH 343 A HOH 298 4 HOH HOH 344 A HOH 299 4 HOH HOH 345 A HOH 302 4 HOH HOH 346 A HOH 303 4 HOH HOH 347 A HOH 304 4 HOH HOH 348 A HOH 305 4 HOH HOH 349 A HOH 310 4 HOH HOH 350 A HOH 311 4 HOH HOH 351 A HOH 204 4 HOH HOH 301 B HOH 205 4 HOH HOH 302 B HOH 208 4 HOH HOH 303 B HOH 214 4 HOH HOH 304 B HOH 216 4 HOH HOH 305 B HOH 217 4 HOH HOH 306 B HOH 219 4 HOH HOH 307 B HOH 221 4 HOH HOH 308 B HOH 225 4 HOH HOH 309 B HOH 226 4 HOH HOH 310 B HOH 227 4 HOH HOH 311 B HOH 228 4 HOH HOH 312 B HOH 229 4 HOH HOH 313 B HOH 230 4 HOH HOH 314 B HOH 231 4 HOH HOH 315 B HOH 232 4 HOH HOH 316 B HOH 233 4 HOH HOH 317 B HOH 234 4 HOH HOH 318 B HOH 236 4 HOH HOH 319 B HOH 238 4 HOH HOH 320 B HOH 241 4 HOH HOH 321 B HOH 242 4 HOH HOH 322 B HOH 244 4 HOH HOH 323 B HOH 245 4 HOH HOH 324 B HOH 247 4 HOH HOH 325 B HOH 248 4 HOH HOH 326 B HOH 249 4 HOH HOH 327 B HOH 250 4 HOH HOH 328 B HOH 255 4 HOH HOH 329 B HOH 256 4 HOH HOH 330 B HOH 258 4 HOH HOH 331 B HOH 259 4 HOH HOH 332 B HOH 261 4 HOH HOH 333 B HOH 262 4 HOH HOH 334 B HOH 263 4 HOH HOH 335 B HOH 264 4 HOH HOH 336 B HOH 267 4 HOH HOH 337 B HOH 269 4 HOH HOH 338 B HOH 271 4 HOH HOH 339 B HOH 272 4 HOH HOH 340 B HOH 278 4 HOH HOH 341 B HOH 281 4 HOH HOH 342 B HOH 282 4 HOH HOH 343 B HOH 283 4 HOH HOH 344 B HOH 285 4 HOH HOH 345 B HOH 286 4 HOH HOH 346 B HOH 289 4 HOH HOH 347 B HOH 292 4 HOH HOH 348 B HOH 293 4 HOH HOH 349 B HOH 295 4 HOH HOH 350 B HOH 296 4 HOH HOH 351 B HOH 297 4 HOH HOH 352 B HOH 300 4 HOH HOH 353 B HOH 301 4 HOH HOH 354 B HOH 306 4 HOH HOH 355 B HOH 307 4 HOH HOH 356 B HOH 308 4 HOH HOH 357 B HOH 309 4 HOH HOH 358 B n 1 18 A n 2 19 A n 3 20 A n 4 21 A n 5 22 A n 6 23 A n 7 24 A n 8 25 A n 9 26 A n 10 27 A n 11 28 A n 12 29 A n 13 30 A n 14 31 A n 15 32 A n 16 33 A n 17 34 A n 18 35 A n 19 36 A n 20 37 A n 21 38 A n 22 39 A n 23 40 A n 24 41 A GLY 42 n 25 GLY 42 A LEU 43 n 26 LEU 43 A GLN 44 n 27 GLN 44 A ARG 45 n 28 ARG 45 A MSE 46 n 29 MSE 46 A GLN 47 n 30 GLN 47 A THR 48 n 31 THR 48 A SER 49 n 32 SER 49 A LYS 50 n 33 LYS 50 A SER 51 n 34 SER 51 A GLU 52 n 35 GLU 52 A THR 53 n 36 THR 53 A ASP 54 n 37 ASP 54 A PHE 55 n 38 PHE 55 A LYS 56 n 39 LYS 56 A PHE 57 n 40 PHE 57 A LYS 58 n 41 LYS 58 A GLY 59 n 42 GLY 59 A LYS 60 n 43 LYS 60 A ASP 61 n 44 ASP 61 A TYR 62 n 45 TYR 62 A HIS 63 n 46 HIS 63 A SER 64 n 47 SER 64 A LEU 65 n 48 LEU 65 A VAL 66 n 49 VAL 66 A SER 67 n 50 SER 67 A ARG 68 n 51 ARG 68 A THR 69 n 52 THR 69 A PRO 70 n 53 PRO 70 A ASP 71 n 54 ASP 71 A ASP 72 n 55 ASP 72 A ASN 73 n 56 ASN 73 A LEU 74 n 57 LEU 74 A PRO 75 n 58 PRO 75 A HIS 76 n 59 HIS 76 A VAL 77 n 60 VAL 77 A THR 78 n 61 THR 78 A ASN 79 n 62 ASN 79 A GLU 80 n 63 GLU 80 A LEU 81 n 64 LEU 81 A GLY 82 n 65 GLY 82 A ASP 83 n 66 ASP 83 A THR 84 n 67 THR 84 A TYR 85 n 68 TYR 85 A VAL 86 n 69 VAL 86 A ASP 87 n 70 ASP 87 A ASN 88 n 71 ASN 88 A LYS 89 n 72 LYS 89 A ILE 90 n 73 ILE 90 A VAL 91 n 74 VAL 91 A LEU 92 n 75 LEU 92 A HIS 93 n 76 HIS 93 A LEU 94 n 77 LEU 94 A THR 95 n 78 THR 95 A ARG 96 n 79 ARG 96 A GLY 97 n 80 GLY 97 A ASN 98 n 81 ASN 98 A GLU 99 n 82 GLU 99 A THR 100 n 83 THR 100 A VAL 101 n 84 VAL 101 A LEU 102 n 85 LEU 102 A ASN 103 n 86 ASN 103 A LYS 104 n 87 LYS 104 A THR 105 n 88 THR 105 A PHE 106 n 89 PHE 106 A THR 107 n 90 THR 107 A LYS 108 n 91 LYS 108 A ASN 109 n 92 ASN 109 A ASP 110 n 93 ASP 110 A PHE 111 n 94 PHE 111 A SER 112 n 95 SER 112 A SER 113 n 96 SER 113 A VAL 114 n 97 VAL 114 A VAL 115 n 98 VAL 115 A ASP 116 n 99 ASP 116 A ALA 117 n 100 ALA 117 A ASN 118 n 101 ASN 118 A PHE 119 n 102 PHE 119 A LEU 120 n 103 LEU 120 A SER 121 n 104 SER 121 A LYS 122 n 105 LYS 122 A SER 123 n 106 SER 123 A ILE 124 n 107 ILE 124 A LEU 125 n 108 LEU 125 A GLU 126 n 109 GLU 126 A GLY 127 n 110 GLY 127 A ILE 128 n 111 ILE 128 A VAL 129 n 112 VAL 129 A TYR 130 n 113 TYR 130 A ASP 131 n 114 ASP 131 A LYS 132 n 115 LYS 132 A THR 133 n 116 THR 133 A THR 134 n 117 THR 134 A PRO 135 n 118 PRO 135 A GLN 136 n 119 GLN 136 A GLY 137 n 120 GLY 137 A ILE 138 n 121 ILE 138 A VAL 139 n 122 VAL 139 A TYR 140 n 123 TYR 140 A ALA 141 n 124 ALA 141 A ALA 142 n 125 ALA 142 A SER 143 n 126 SER 143 A VAL 144 n 127 VAL 144 A CYS 145 n 128 CYS 145 A TYR 146 n 129 TYR 146 A PRO 147 n 130 PRO 147 A GLN 148 n 131 GLN 148 A THR 149 n 132 THR 149 A ASP 150 n 133 ASP 150 A LEU 151 n 134 LEU 151 A TYR 152 n 135 TYR 152 A MSE 153 n 136 MSE 153 A PRO 154 n 137 PRO 154 A LEU 155 n 138 LEU 155 A SER 156 n 139 SER 156 A ILE 157 n 140 ILE 157 A THR 158 n 141 THR 158 A ILE 159 n 142 ILE 159 A THR 160 n 143 THR 160 A ALA 161 n 144 ALA 161 A ASP 162 n 145 ASP 162 A GLY 163 n 146 GLY 163 A LYS 164 n 147 LYS 164 A MSE 165 n 148 MSE 165 A SER 166 n 149 SER 166 A ILE 167 n 150 ILE 167 A GLN 168 n 151 GLN 168 A LYS 169 n 152 LYS 169 A VAL 170 n 153 VAL 170 A ASP 171 n 154 ASP 171 A ILE 172 n 155 ILE 172 A LEU 173 n 156 LEU 173 A GLU 174 n 157 GLU 174 A GLU 175 n 158 GLU 175 A ASP 176 n 159 ASP 176 A TYR 177 n 160 TYR 177 A n 161 178 A n 162 179 A n 163 180 A n 164 181 A n 165 182 A n 166 183 A n 1 18 B n 2 19 B n 3 20 B n 4 21 B n 5 22 B n 6 23 B n 7 24 B n 8 25 B n 9 26 B n 10 27 B n 11 28 B n 12 29 B n 13 30 B n 14 31 B n 15 32 B n 16 33 B n 17 34 B n 18 35 B n 19 36 B n 20 37 B n 21 38 B n 22 39 B n 23 40 B n 24 41 B GLY 42 n 25 GLY 42 B LEU 43 n 26 LEU 43 B GLN 44 n 27 GLN 44 B ARG 45 n 28 ARG 45 B MSE 46 n 29 MSE 46 B GLN 47 n 30 GLN 47 B THR 48 n 31 THR 48 B SER 49 n 32 SER 49 B LYS 50 n 33 LYS 50 B SER 51 n 34 SER 51 B GLU 52 n 35 GLU 52 B THR 53 n 36 THR 53 B ASP 54 n 37 ASP 54 B PHE 55 n 38 PHE 55 B LYS 56 n 39 LYS 56 B PHE 57 n 40 PHE 57 B LYS 58 n 41 LYS 58 B GLY 59 n 42 GLY 59 B LYS 60 n 43 LYS 60 B ASP 61 n 44 ASP 61 B TYR 62 n 45 TYR 62 B HIS 63 n 46 HIS 63 B SER 64 n 47 SER 64 B LEU 65 n 48 LEU 65 B VAL 66 n 49 VAL 66 B SER 67 n 50 SER 67 B ARG 68 n 51 ARG 68 B THR 69 n 52 THR 69 B PRO 70 n 53 PRO 70 B ASP 71 n 54 ASP 71 B ASP 72 n 55 ASP 72 B ASN 73 n 56 ASN 73 B LEU 74 n 57 LEU 74 B PRO 75 n 58 PRO 75 B HIS 76 n 59 HIS 76 B VAL 77 n 60 VAL 77 B THR 78 n 61 THR 78 B ASN 79 n 62 ASN 79 B GLU 80 n 63 GLU 80 B LEU 81 n 64 LEU 81 B GLY 82 n 65 GLY 82 B ASP 83 n 66 ASP 83 B THR 84 n 67 THR 84 B TYR 85 n 68 TYR 85 B VAL 86 n 69 VAL 86 B ASP 87 n 70 ASP 87 B ASN 88 n 71 ASN 88 B LYS 89 n 72 LYS 89 B ILE 90 n 73 ILE 90 B VAL 91 n 74 VAL 91 B LEU 92 n 75 LEU 92 B HIS 93 n 76 HIS 93 B LEU 94 n 77 LEU 94 B THR 95 n 78 THR 95 B ARG 96 n 79 ARG 96 B GLY 97 n 80 GLY 97 B ASN 98 n 81 ASN 98 B GLU 99 n 82 GLU 99 B THR 100 n 83 THR 100 B VAL 101 n 84 VAL 101 B LEU 102 n 85 LEU 102 B ASN 103 n 86 ASN 103 B LYS 104 n 87 LYS 104 B THR 105 n 88 THR 105 B PHE 106 n 89 PHE 106 B THR 107 n 90 THR 107 B LYS 108 n 91 LYS 108 B ASN 109 n 92 ASN 109 B ASP 110 n 93 ASP 110 B PHE 111 n 94 PHE 111 B SER 112 n 95 SER 112 B SER 113 n 96 SER 113 B VAL 114 n 97 VAL 114 B VAL 115 n 98 VAL 115 B ASP 116 n 99 ASP 116 B ALA 117 n 100 ALA 117 B ASN 118 n 101 ASN 118 B PHE 119 n 102 PHE 119 B LEU 120 n 103 LEU 120 B SER 121 n 104 SER 121 B LYS 122 n 105 LYS 122 B SER 123 n 106 SER 123 B ILE 124 n 107 ILE 124 B LEU 125 n 108 LEU 125 B GLU 126 n 109 GLU 126 B GLY 127 n 110 GLY 127 B ILE 128 n 111 ILE 128 B VAL 129 n 112 VAL 129 B TYR 130 n 113 TYR 130 B ASP 131 n 114 ASP 131 B LYS 132 n 115 LYS 132 B THR 133 n 116 THR 133 B THR 134 n 117 THR 134 B PRO 135 n 118 PRO 135 B GLN 136 n 119 GLN 136 B GLY 137 n 120 GLY 137 B ILE 138 n 121 ILE 138 B VAL 139 n 122 VAL 139 B TYR 140 n 123 TYR 140 B ALA 141 n 124 ALA 141 B ALA 142 n 125 ALA 142 B SER 143 n 126 SER 143 B VAL 144 n 127 VAL 144 B CYS 145 n 128 CYS 145 B TYR 146 n 129 TYR 146 B PRO 147 n 130 PRO 147 B GLN 148 n 131 GLN 148 B THR 149 n 132 THR 149 B ASP 150 n 133 ASP 150 B LEU 151 n 134 LEU 151 B TYR 152 n 135 TYR 152 B MSE 153 n 136 MSE 153 B PRO 154 n 137 PRO 154 B LEU 155 n 138 LEU 155 B SER 156 n 139 SER 156 B ILE 157 n 140 ILE 157 B THR 158 n 141 THR 158 B ILE 159 n 142 ILE 159 B THR 160 n 143 THR 160 B ALA 161 n 144 ALA 161 B ASP 162 n 145 ASP 162 B GLY 163 n 146 GLY 163 B LYS 164 n 147 LYS 164 B MSE 165 n 148 MSE 165 B SER 166 n 149 SER 166 B ILE 167 n 150 ILE 167 B GLN 168 n 151 GLN 168 B LYS 169 n 152 LYS 169 B VAL 170 n 153 VAL 170 B ASP 171 n 154 ASP 171 B ILE 172 n 155 ILE 172 B LEU 173 n 156 LEU 173 B GLU 174 n 157 GLU 174 B GLU 175 n 158 GLU 175 B ASP 176 n 159 ASP 176 B TYR 177 n 160 TYR 177 B n 161 178 B n 162 179 B n 163 180 B n 164 181 B n 165 182 B n 166 183 B 2.2447 0.0122 0.2290 3.7067 -0.1810 2.6072 -0.0953 0.0608 -0.1334 -0.1562 0.0011 -0.1527 0.3490 0.1049 0.0942 -0.0756 0.0620 -0.1011 -0.2837 0.0203 -0.0011 refined 5.4498 3.2450 16.1178 X-RAY DIFFRACTION 2.6632 -1.0235 0.3712 5.1265 0.3007 3.1113 0.0257 0.0389 0.0235 -0.3387 -0.0752 0.0120 -0.2486 -0.1162 0.0496 -0.0759 0.0570 -0.1116 -0.2987 -0.0105 -0.0494 refined -4.2189 20.7631 16.2740 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 { A|42-177 } X-RAY DIFFRACTION 2 { B|42-177 } author_and_software_defined_assembly PISA 4 tetrameric 9040 -47 24710 A MSE 46 SELENOMETHIONINE A MSE 29 MET A MSE 153 SELENOMETHIONINE A MSE 136 MET A MSE 165 SELENOMETHIONINE A MSE 148 MET B MSE 46 SELENOMETHIONINE B MSE 29 MET B MSE 153 SELENOMETHIONINE B MSE 136 MET B MSE 165 SELENOMETHIONINE B MSE 148 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 44 A N GLN 27 A O THR 84 A O THR 67 A O TYR 85 A O TYR 68 A N VAL 77 A N VAL 60 A O PHE 106 A O PHE 89 A N ILE 90 A N ILE 73 A O HIS 93 A O HIS 76 A N LEU 65 A N LEU 48 A O TYR 62 A O TYR 45 A N PHE 55 A N PHE 38 A N ASP 54 A N ASP 37 B O GLU 52 B O GLU 35 B N PHE 55 B N PHE 38 B O TYR 62 B O TYR 45 B N LEU 65 B N LEU 48 B O HIS 93 B O HIS 76 B N ILE 90 B N ILE 73 B O PHE 106 B O PHE 89 A N VAL 129 A N VAL 112 A O ALA 141 A O ALA 124 A N ILE 138 A N ILE 121 A O ILE 159 A O ILE 142 A N THR 158 A N THR 141 A O SER 166 A O SER 149 B N VAL 77 B N VAL 60 B O TYR 85 B O TYR 68 B N LYS 132 B N LYS 115 B O VAL 139 B O VAL 122 B N ILE 138 B N ILE 121 B O ILE 159 B O ILE 142 B N THR 158 B N THR 141 B O SER 166 B O SER 149 1 A CG GLN 47 A CG GLN 30 1 Y 1 A CD GLN 47 A CD GLN 30 1 Y 1 A OE1 GLN 47 A OE1 GLN 30 1 Y 1 A NE2 GLN 47 A NE2 GLN 30 1 Y 1 A CG GLU 80 A CG GLU 63 1 Y 1 A CD GLU 80 A CD GLU 63 1 Y 1 A OE1 GLU 80 A OE1 GLU 63 1 Y 1 A OE2 GLU 80 A OE2 GLU 63 1 Y 1 A CG LEU 81 A CG LEU 64 1 Y 1 A CD1 LEU 81 A CD1 LEU 64 1 Y 1 A CD2 LEU 81 A CD2 LEU 64 1 Y 1 A CG ASN 118 A CG ASN 101 1 Y 1 A OD1 ASN 118 A OD1 ASN 101 1 Y 1 A ND2 ASN 118 A ND2 ASN 101 1 Y 1 A CG PHE 119 A CG PHE 102 1 Y 1 A CD1 PHE 119 A CD1 PHE 102 1 Y 1 A CD2 PHE 119 A CD2 PHE 102 1 Y 1 A CE1 PHE 119 A CE1 PHE 102 1 Y 1 A CE2 PHE 119 A CE2 PHE 102 1 Y 1 A CZ PHE 119 A CZ PHE 102 1 Y 1 A CG GLN 148 A CG GLN 131 1 Y 1 A CD GLN 148 A CD GLN 131 1 Y 1 A OE1 GLN 148 A OE1 GLN 131 1 Y 1 A NE2 GLN 148 A NE2 GLN 131 1 Y 1 A CG ASP 150 A CG ASP 133 1 Y 1 A OD1 ASP 150 A OD1 ASP 133 1 Y 1 A OD2 ASP 150 A OD2 ASP 133 1 Y 1 B CG GLU 80 B CG GLU 63 1 Y 1 B CD GLU 80 B CD GLU 63 1 Y 1 B OE1 GLU 80 B OE1 GLU 63 1 Y 1 B OE2 GLU 80 B OE2 GLU 63 1 Y 1 B CG LEU 81 B CG LEU 64 1 Y 1 B CD1 LEU 81 B CD1 LEU 64 1 Y 1 B CD2 LEU 81 B CD2 LEU 64 1 Y 1 B CG ASP 83 B CG ASP 66 1 Y 1 B OD1 ASP 83 B OD1 ASP 66 1 Y 1 B OD2 ASP 83 B OD2 ASP 66 1 Y 1 B CG ASN 118 B CG ASN 101 1 Y 1 B OD1 ASN 118 B OD1 ASN 101 1 Y 1 B ND2 ASN 118 B ND2 ASN 101 1 Y 1 B CG GLN 148 B CG GLN 131 1 Y 1 B CD GLN 148 B CD GLN 131 1 Y 1 B OE1 GLN 148 B OE1 GLN 131 1 Y 1 B NE2 GLN 148 B NE2 GLN 131 1 Y 1 B CG ASP 176 B CG ASP 159 1 Y 1 B OD1 ASP 176 B OD1 ASP 159 1 Y 1 B OD2 ASP 176 B OD2 ASP 159 1 Y 1 B CG TYR 177 B CG TYR 160 1 Y 1 B CD1 TYR 177 B CD1 TYR 160 1 Y 1 B CD2 TYR 177 B CD2 TYR 160 1 Y 1 B CE1 TYR 177 B CE1 TYR 160 1 Y 1 B CE2 TYR 177 B CE2 TYR 160 1 Y 1 B CZ TYR 177 B CZ TYR 160 1 Y 1 B OH TYR 177 B OH TYR 160 1 Y 1 A GLY 18 A GLY 1 1 Y 1 A CYS 19 A CYS 2 1 Y 1 A GLY 20 A GLY 3 1 Y 1 A GLY 21 A GLY 4 1 Y 1 A LYS 22 A LYS 5 1 Y 1 A LYS 23 A LYS 6 1 Y 1 A GLY 24 A GLY 7 1 Y 1 A SER 25 A SER 8 1 Y 1 A SER 26 A SER 9 1 Y 1 A ASP 27 A ASP 10 1 Y 1 A ASN 28 A ASN 11 1 Y 1 A THR 29 A THR 12 1 Y 1 A SER 30 A SER 13 1 Y 1 A THR 31 A THR 14 1 Y 1 A LEU 32 A LEU 15 1 Y 1 A ALA 33 A ALA 16 1 Y 1 A MSE 34 A MSE 17 1 Y 1 A ILE 35 A ILE 18 1 Y 1 A ASP 36 A ASP 19 1 Y 1 A SER 37 A SER 20 1 Y 1 A VAL 38 A VAL 21 1 Y 1 A ASP 39 A ASP 22 1 Y 1 A ALA 40 A ALA 23 1 Y 1 A HIS 41 A HIS 24 1 Y 1 A ASP 178 A ASP 161 1 Y 1 A ASP 179 A ASP 162 1 Y 1 A GLU 180 A GLU 163 1 Y 1 A ALA 181 A ALA 164 1 Y 1 A PRO 182 A PRO 165 1 Y 1 A ASN 183 A ASN 166 1 Y 1 B GLY 18 B GLY 1 1 Y 1 B CYS 19 B CYS 2 1 Y 1 B GLY 20 B GLY 3 1 Y 1 B GLY 21 B GLY 4 1 Y 1 B LYS 22 B LYS 5 1 Y 1 B LYS 23 B LYS 6 1 Y 1 B GLY 24 B GLY 7 1 Y 1 B SER 25 B SER 8 1 Y 1 B SER 26 B SER 9 1 Y 1 B ASP 27 B ASP 10 1 Y 1 B ASN 28 B ASN 11 1 Y 1 B THR 29 B THR 12 1 Y 1 B SER 30 B SER 13 1 Y 1 B THR 31 B THR 14 1 Y 1 B LEU 32 B LEU 15 1 Y 1 B ALA 33 B ALA 16 1 Y 1 B MSE 34 B MSE 17 1 Y 1 B ILE 35 B ILE 18 1 Y 1 B ASP 36 B ASP 19 1 Y 1 B SER 37 B SER 20 1 Y 1 B VAL 38 B VAL 21 1 Y 1 B ASP 39 B ASP 22 1 Y 1 B ALA 40 B ALA 23 1 Y 1 B HIS 41 B HIS 24 1 Y 1 B ASP 178 B ASP 161 1 Y 1 B ASP 179 B ASP 162 1 Y 1 B GLU 180 B GLU 163 1 Y 1 B ALA 181 B ALA 164 1 Y 1 B PRO 182 B PRO 165 1 Y 1 B ASN 183 B ASN 166 1 Y 1 A ASP 131 -109.83 -64.33 155.640 61.5614 29.510 -4.0304 0.0000 0.3249 11.0061 0.0000 -6.9757 0.9387 0.9162 1. ZERO OCCUPANCY HYDROGENS WERE INCLUDED DURING REFINEMENT TO IMPROVE THE ANTI-BUMPING RESTRAINTS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 5. NCS RESTRAINTS WERE APPLIED DURING REFINEMENT USING LSSR (-AUTONCS) IN BUSTER. 6. MAD PHASE RESTRAINTS WERE USED DURING REFINEMENT. 7. SULPFATE (SO4) IONS AND EDO (ETHYLENE GLYCOL) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 0.2332 0.2070 0.2086 2.1500 24.947 933 16913 5.5200 99.2900 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MAD 0.412 2.1500 24.947 109 2216 13 0 2094 1190 SINUSOIDAL 2.000 52 HARMONIC 2.000 610 HARMONIC 5.000 4202 HARMONIC 20.000 303 SEMIHARMONIC 5.000 4310 SEMIHARMONIC 4.000 0.007 4202 HARMONIC 2.000 1.000 7597 HARMONIC 2.000 3.110 2.700 0.2519 0.2277 0.2290 2.2800 133 2534 2667 9 4.9900 99.2900 44.273 2.15 24.947 4ID2 16940 -3.000 0.048 1 10.010 96.500 0.766 2.150 2.230 1.2 5725 3127 1 89.400 0.587 2.230 2.320 1.6 6074 3250 1 97.300 0.449 2.320 2.420 2.0 5870 3136 1 97.200 0.396 2.420 2.550 2.4 6184 3329 1 97.700 0.239 2.550 2.710 3.6 6118 3276 1 97.600 0.154 2.710 2.920 5.4 6279 3344 1 98.200 0.076 2.920 3.210 9.9 6059 3232 1 97.700 0.039 3.210 3.670 17.3 6084 3260 1 97.100 0.027 3.670 4.610 24.9 6005 3234 1 96.500 0.018 4.610 31.2 6203 3324 1 96.800 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package March 15, 2012 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS phasing SHELXD refinement BUSTER 2.10.0 Y Crystal structure of a DUF4738 family protein (BACOVA_05496) from Bacteroides ovatus ATCC 8483 at 2.15 A resolution 1 N N 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N A THR 107 A THR 90 HELX_P A SER 112 A SER 95 5 1 6 A ASP 116 A ASP 99 HELX_P A LYS 122 A LYS 105 1 2 7 B THR 107 B THR 90 HELX_P B SER 112 B SER 95 5 3 6 B ASP 116 B ASP 99 HELX_P B LYS 122 B LYS 105 1 4 7 covale 1.336 both A ARG 45 A C ARG 28 1_555 A MSE 46 A N MSE 29 1_555 covale 1.336 both A MSE 46 A C MSE 29 1_555 A GLN 47 A N GLN 30 1_555 covale 1.335 both A TYR 152 A C TYR 135 1_555 A MSE 153 A N MSE 136 1_555 covale 1.345 both A MSE 153 A C MSE 136 1_555 A PRO 154 A N PRO 137 1_555 covale 1.334 both A LYS 164 A C LYS 147 1_555 A MSE 165 A N MSE 148 1_555 covale 1.348 both A MSE 165 A C MSE 148 1_555 A SER 166 A N SER 149 1_555 covale 1.363 both B ARG 45 B C ARG 28 1_555 B MSE 46 B N MSE 29 1_555 covale 1.334 both B MSE 46 B C MSE 29 1_555 B GLN 47 B N GLN 30 1_555 covale 1.321 both B TYR 152 B C TYR 135 1_555 B MSE 153 B N MSE 136 1_555 covale 1.348 both B MSE 153 B C MSE 136 1_555 B PRO 154 B N PRO 137 1_555 covale 1.333 both B LYS 164 B C LYS 147 1_555 B MSE 165 B N MSE 148 1_555 covale 1.346 both B MSE 165 B C MSE 148 1_555 B SER 166 B N SER 149 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION beta barrel like fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION A7M5V0_BACOV UNP 1 19 A7M5V0 CGGKKGSSDNTSTLAMIDSVDAHGLQRMQTSKSETDFKFKGKDYHSLVSRTPDDNLPHVTNELGDTYVDNKIVLHLTRGN ETVLNKTFTKNDFSSVVDANFLSKSILEGIVYDKTTPQGIVYAASVCYPQTDLYMPLSITITADGKMSIQKVDILEEDYD DEAPN 19 183 4ID2 19 183 A7M5V0 A 1 2 166 19 183 4ID2 19 183 A7M5V0 B 1 2 166 1 expression tag GLY 18 4ID2 A A7M5V0 UNP 1 2 expression tag GLY 18 4ID2 B A7M5V0 UNP 1 3 8 4 2 4 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 43 A LEU 26 A GLN 44 A GLN 27 A THR 84 A THR 67 A TYR 85 A TYR 68 A VAL 77 A VAL 60 A THR 78 A THR 61 A GLU 99 A GLU 82 A PHE 106 A PHE 89 A ASN 88 A ASN 71 A ARG 96 A ARG 79 A LYS 60 A LYS 43 A PRO 70 A PRO 53 A LYS 50 A LYS 33 A PHE 57 A PHE 40 B LYS 50 B LYS 33 B PHE 57 B PHE 40 B LYS 60 B LYS 43 B PRO 70 B PRO 53 B ASN 88 B ASN 71 B ARG 96 B ARG 79 B GLU 99 B GLU 82 B PHE 106 B PHE 89 A ILE 124 A ILE 107 A THR 133 A THR 116 A ILE 138 A ILE 121 A CYS 145 A CYS 128 A TYR 152 A TYR 135 A ILE 159 A ILE 142 A MSE 165 A MSE 148 A LYS 169 A LYS 152 B VAL 77 B VAL 60 B THR 78 B THR 61 B THR 84 B THR 67 B TYR 85 B TYR 68 B ILE 124 B ILE 107 B THR 133 B THR 116 B ILE 138 B ILE 121 B CYS 145 B CYS 128 B TYR 152 B TYR 135 B ILE 159 B ILE 142 B MSE 165 B MSE 148 B LYS 169 B LYS 152 BINDING SITE FOR RESIDUE SO4 A 201 A SO4 201 Software 7 BINDING SITE FOR RESIDUE EDO A 202 A EDO 202 Software 3 BINDING SITE FOR RESIDUE EDO B 201 B EDO 201 Software 6 A ASP 71 A ASP 54 7 1_555 A ASN 73 A ASN 56 7 1_555 A HOH 301 F HOH 7 1_555 A HOH 314 F HOH 7 1_555 B ASP 71 B ASP 54 7 3_545 B ASN 73 B ASN 56 7 3_545 B LYS 89 B LYS 72 7 3_545 A CYS 145 A CYS 128 3 1_555 A PRO 147 A PRO 130 3 1_555 A HOH 343 F HOH 3 1_555 A THR 100 A THR 83 6 4_556 A ASN 103 A ASN 86 6 4_556 B THR 100 B THR 83 6 1_555 B ASN 103 B ASN 86 6 1_555 B HOH 328 G HOH 6 1_555 B HOH 330 G HOH 6 1_555 5 C 1 2 1