0.026772
0.015457
0.000000
0.000000
0.030913
0.000000
0.000000
0.000000
0.004349
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
37.353
37.353
229.960
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
O
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
R
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
N
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
To be published
0353
Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution
10.2210/pdb4iej/pdb
pdb_00004iej
100
1
Rhodium-coated vertical and horizontal focusing mirrors, liquid-nitrogen cooled double crystal Si(111) monochromator
PIXEL
2012-05-31
DECTRIS PILATUS 6M
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
BL12-2
SSRL
0.9795
SYNCHROTRON
SSRL BEAMLINE BL12-2
11216.549
DNA methyltransferase 1-associated protein 1
SANT domain containing residues 121-212
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
76
nat
water
DNMAP1, DNMT1-associated protein 1
no
no
GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC
AKLANVRAVPGTD
GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC
AKLANVRAVPGTD
A
JCSG-423958
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BC008053, DMAP1, KIAA1425
9606
Homo sapiens
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.06
40.42
VAPOR DIFFUSION, SITTING DROP
0.20M calcium chloride 20.00% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Structure summary
Structure summary
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2013-01-02
1
1
2013-01-09
1
2
2013-01-16
1
3
2017-11-15
1
4
2023-02-01
1
5
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-12-13
REL
REL
CA
CALCIUM ION
HOH
water
THE CONSTRUCT (121-212) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
3HM5
PDB
experimental model
CA
469
2
CA
CA
301
A
HOH
470
3
HOH
HOH
401
A
HOH
471
3
HOH
HOH
402
A
HOH
472
3
HOH
HOH
403
A
HOH
473
3
HOH
HOH
404
A
HOH
474
3
HOH
HOH
405
A
HOH
475
3
HOH
HOH
406
A
HOH
476
3
HOH
HOH
407
A
HOH
477
3
HOH
HOH
408
A
HOH
478
3
HOH
HOH
409
A
HOH
479
3
HOH
HOH
410
A
HOH
480
3
HOH
HOH
411
A
HOH
481
3
HOH
HOH
412
A
HOH
482
3
HOH
HOH
413
A
HOH
483
3
HOH
HOH
414
A
HOH
484
3
HOH
HOH
415
A
HOH
485
3
HOH
HOH
416
A
HOH
486
3
HOH
HOH
417
A
HOH
487
3
HOH
HOH
418
A
HOH
488
3
HOH
HOH
419
A
HOH
489
3
HOH
HOH
420
A
HOH
490
3
HOH
HOH
421
A
HOH
491
3
HOH
HOH
422
A
HOH
492
3
HOH
HOH
423
A
HOH
493
3
HOH
HOH
424
A
HOH
494
3
HOH
HOH
425
A
HOH
495
3
HOH
HOH
426
A
HOH
496
3
HOH
HOH
427
A
HOH
497
3
HOH
HOH
428
A
HOH
498
3
HOH
HOH
429
A
HOH
499
3
HOH
HOH
430
A
HOH
500
3
HOH
HOH
431
A
HOH
501
3
HOH
HOH
432
A
HOH
502
3
HOH
HOH
433
A
HOH
503
3
HOH
HOH
434
A
HOH
504
3
HOH
HOH
435
A
HOH
505
3
HOH
HOH
436
A
HOH
506
3
HOH
HOH
437
A
HOH
507
3
HOH
HOH
438
A
HOH
508
3
HOH
HOH
439
A
HOH
509
3
HOH
HOH
440
A
HOH
510
3
HOH
HOH
441
A
HOH
511
3
HOH
HOH
442
A
HOH
512
3
HOH
HOH
443
A
HOH
513
3
HOH
HOH
444
A
HOH
514
3
HOH
HOH
445
A
HOH
515
3
HOH
HOH
446
A
HOH
516
3
HOH
HOH
447
A
HOH
517
3
HOH
HOH
448
A
HOH
518
3
HOH
HOH
449
A
HOH
519
3
HOH
HOH
450
A
HOH
520
3
HOH
HOH
451
A
HOH
521
3
HOH
HOH
452
A
HOH
522
3
HOH
HOH
453
A
HOH
523
3
HOH
HOH
454
A
HOH
524
3
HOH
HOH
455
A
HOH
525
3
HOH
HOH
456
A
HOH
526
3
HOH
HOH
457
A
HOH
527
3
HOH
HOH
458
A
HOH
528
3
HOH
HOH
459
A
HOH
529
3
HOH
HOH
460
A
HOH
530
3
HOH
HOH
461
A
HOH
531
3
HOH
HOH
462
A
HOH
532
3
HOH
HOH
463
A
HOH
533
3
HOH
HOH
464
A
HOH
534
3
HOH
HOH
465
A
HOH
535
3
HOH
HOH
466
A
HOH
536
3
HOH
HOH
467
A
HOH
537
3
HOH
HOH
468
A
HOH
538
3
HOH
HOH
469
A
HOH
539
3
HOH
HOH
470
A
HOH
540
3
HOH
HOH
471
A
HOH
541
3
HOH
HOH
472
A
HOH
542
3
HOH
HOH
473
A
HOH
543
3
HOH
HOH
474
A
HOH
544
3
HOH
HOH
475
A
HOH
545
3
HOH
HOH
476
A
n
1
0
A
n
2
121
A
n
3
122
A
n
4
123
A
n
5
124
A
n
6
125
A
n
7
126
A
n
8
127
A
n
9
128
A
n
10
129
A
n
11
130
A
n
12
131
A
n
13
132
A
VAL
133
n
14
VAL
133
A
GLN
134
n
15
GLN
134
A
VAL
135
n
16
VAL
135
A
PRO
136
n
17
PRO
136
A
VAL
137
n
18
VAL
137
A
TYR
138
n
19
TYR
138
A
SER
139
n
20
SER
139
A
GLU
140
n
21
GLU
140
A
GLN
141
n
22
GLN
141
A
GLU
142
n
23
GLU
142
A
TYR
143
n
24
TYR
143
A
GLN
144
n
25
GLN
144
A
LEU
145
n
26
LEU
145
A
TYR
146
n
27
TYR
146
A
LEU
147
n
28
LEU
147
A
HIS
148
n
29
HIS
148
A
ASP
149
n
30
ASP
149
A
ASP
150
n
31
ASP
150
A
ALA
151
n
32
ALA
151
A
TRP
152
n
33
TRP
152
A
THR
153
n
34
THR
153
A
LYS
154
n
35
LYS
154
A
ALA
155
n
36
ALA
155
A
GLU
156
n
37
GLU
156
A
THR
157
n
38
THR
157
A
ASP
158
n
39
ASP
158
A
HIS
159
n
40
HIS
159
A
LEU
160
n
41
LEU
160
A
PHE
161
n
42
PHE
161
A
ASP
162
n
43
ASP
162
A
LEU
163
n
44
LEU
163
A
SER
164
n
45
SER
164
A
ARG
165
n
46
ARG
165
A
ARG
166
n
47
ARG
166
A
PHE
167
n
48
PHE
167
A
ASP
168
n
49
ASP
168
A
LEU
169
n
50
LEU
169
A
ARG
170
n
51
ARG
170
A
PHE
171
n
52
PHE
171
A
VAL
172
n
53
VAL
172
A
VAL
173
n
54
VAL
173
A
ILE
174
n
55
ILE
174
A
HIS
175
n
56
HIS
175
A
ASP
176
n
57
ASP
176
A
ARG
177
n
58
ARG
177
A
TYR
178
n
59
TYR
178
A
ASP
179
n
60
ASP
179
A
HIS
180
n
61
HIS
180
A
GLN
181
n
62
GLN
181
A
GLN
182
n
63
GLN
182
A
PHE
183
n
64
PHE
183
A
LYS
184
n
65
LYS
184
A
LYS
185
n
66
LYS
185
A
ARG
186
n
67
ARG
186
A
SER
187
n
68
SER
187
A
VAL
188
n
69
VAL
188
A
GLU
189
n
70
GLU
189
A
ASP
190
n
71
ASP
190
A
LEU
191
n
72
LEU
191
A
LYS
192
n
73
LYS
192
A
GLU
193
n
74
GLU
193
A
ARG
194
n
75
ARG
194
A
TYR
195
n
76
TYR
195
A
TYR
196
n
77
TYR
196
A
HIS
197
n
78
HIS
197
A
ILE
198
n
79
ILE
198
A
CYS
199
n
80
CYS
199
A
ALA
200
n
81
ALA
200
A
LYS
201
n
82
LYS
201
A
LEU
202
n
83
LEU
202
A
ALA
203
n
84
ALA
203
A
ASN
204
n
85
ASN
204
A
VAL
205
n
86
VAL
205
A
ARG
206
n
87
ARG
206
A
ALA
207
n
88
ALA
207
A
n
89
208
A
n
90
209
A
n
91
210
A
n
92
211
A
n
93
212
A
1.1018
-0.0185
0.3331
2.1430
-0.0450
6.3766
-0.0223
-0.0360
-0.0515
0.1197
-0.0648
-0.0139
-0.1000
-0.4342
0.0871
-0.0424
0.0191
-0.0041
-0.0414
-0.0109
-0.1080
refined
4.3298
24.2719
6.9730
X-RAY DIFFRACTION
A
133
A
207
X-RAY DIFFRACTION
1
{ A|133 - A|207 }
author_defined_assembly
1
monomeric
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
A
ASP
168
A
OD1
ASP
49
1_555
89.2
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
412
C
O
HOH
1_555
75.2
A
ASP
168
A
OD1
ASP
49
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
412
C
O
HOH
1_555
97.8
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
419
C
O
HOH
1_555
78.0
A
ASP
168
A
OD1
ASP
49
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
419
C
O
HOH
1_555
87.5
A
HOH
412
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
419
C
O
HOH
1_555
152.6
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
471
C
O
HOH
1_555
155.9
A
ASP
168
A
OD1
ASP
49
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
471
C
O
HOH
1_555
106.1
A
HOH
412
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
471
C
O
HOH
1_555
84.1
A
HOH
419
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
471
C
O
HOH
1_555
120.3
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
135.6
A
ASP
168
A
OD1
ASP
49
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
57.4
A
HOH
412
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
132.4
A
HOH
419
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
72.6
A
HOH
471
C
O
HOH
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
68.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
413
C
HOH
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLY
121
A
GLY
2
1
Y
1
A
LYS
122
A
LYS
3
1
Y
1
A
ASP
123
A
ASP
4
1
Y
1
A
TYR
124
A
TYR
5
1
Y
1
A
PRO
125
A
PRO
6
1
Y
1
A
PHE
126
A
PHE
7
1
Y
1
A
ALA
127
A
ALA
8
1
Y
1
A
ARG
128
A
ARG
9
1
Y
1
A
PHE
129
A
PHE
10
1
Y
1
A
ASN
130
A
ASN
11
1
Y
1
A
LYS
131
A
LYS
12
1
Y
1
A
THR
132
A
THR
13
1
Y
1
A
VAL
208
A
VAL
89
1
Y
1
A
PRO
209
A
PRO
90
1
Y
1
A
GLY
210
A
GLY
91
1
Y
1
A
THR
211
A
THR
92
1
Y
1
A
ASP
212
A
ASP
93
1
Y
112.380
36.2049
17.680
-2.9136
0.0000
0.0000
-2.9136
0.0000
5.8272
0.9512
0.9482
1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. CALCIUM ION MODELED IS PRESENT IN CRYSTALLIZATION BUFFER.
0.2259
0.1970
0.1984
1.4500
38.327
920
18079
5.0900
99.7800
1.000
0.300
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
3hm5
0.251
1.4500
38.327
76
732
1
0
655
371
SINUSOIDAL
2.000
23
HARMONIC
2.000
120
HARMONIC
5.000
747
HARMONIC
20.000
0
SEMIHARMONIC
5.000
89
SEMIHARMONIC
5.000
882
SEMIHARMONIC
4.000
0.010
747
HARMONIC
2.000
0.920
1023
HARMONIC
2.000
3.810
2.900
0.2340
0.2231
0.2237
1.5400
163
2649
2812
9
5.8000
99.7800
23.311
1.45
38.327
4IEJ
18199
-3.000
0.050
1
18.990
99.700
0.984
1.450
1.500
2.3
15770
1696
1
99.700
0.757
1.500
1.560
3.0
15901
1763
1
99.900
0.533
1.560
1.630
4.2
15565
1733
1
99.900
0.350
1.630
1.720
6.4
17124
1837
1
99.800
0.239
1.720
1.830
9.3
16332
1804
1
99.900
0.140
1.830
1.970
14.3
15716
1775
1
99.400
0.080
1.970
2.170
23.5
16795
1818
1
100.000
0.053
2.170
2.480
32.4
15603
1799
1
99.400
0.043
2.480
3.120
41.4
16570
1880
1
99.900
0.035
3.120
38.327
46.0
15913
2094
1
99.200
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
MOLREP
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
March 15, 2012
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.10.0
data reduction
XDS
refinement
BUSTER
2.10.0
Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution
1
N
N
2
N
N
3
N
N
A
SER
139
A
SER
20
HELX_P
A
LEU
147
A
LEU
28
1
1
9
A
THR
153
A
THR
34
HELX_P
A
PHE
167
A
PHE
48
1
2
15
A
ARG
170
A
ARG
51
HELX_P
A
TYR
178
A
TYR
59
1
3
9
A
SER
187
A
SER
68
HELX_P
A
ARG
206
A
ARG
87
1
4
20
metalc
2.416
A
ARG
165
A
O
ARG
46
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.943
A
ASP
168
A
OD1
ASP
49
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.170
A
CA
301
B
CA
CA
1_555
A
HOH
412
C
O
HOH
1_555
metalc
2.654
A
CA
301
B
CA
CA
1_555
A
HOH
419
C
O
HOH
1_555
metalc
2.383
A
CA
301
B
CA
CA
1_555
A
HOH
471
C
O
HOH
1_555
metalc
2.570
A
CA
301
B
CA
CA
1_555
A
HOH
473
C
O
HOH
1_555
TRANSCRIPTION
DNA methylation, chromatin regulator, repressor, Structural Genomics, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION
DMAP1_HUMAN
UNP
1
121
Q9NPF5
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA
KLANVRAVPGTD
121
212
4IEJ
121
212
Q9NPF5
A
1
2
93
1
expression tag
GLY
0
4IEJ
A
Q9NPF5
UNP
1
BINDING SITE FOR RESIDUE CA A 301
A
CA
301
Software
7
A
ARG
165
A
ARG
46
7
1_555
A
ASP
168
A
ASP
49
7
1_555
A
ASP
176
A
ASP
57
7
8_665
A
HOH
412
C
HOH
7
1_555
A
HOH
419
C
HOH
7
1_555
A
HOH
471
C
HOH
7
1_555
A
HOH
473
C
HOH
7
1_555
178
P 61 2 2