0.026772 0.015457 0.000000 0.000000 0.030913 0.000000 0.000000 0.000000 0.004349 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) Partnership for T-Cell Biology (TCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 37.353 37.353 229.960 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C Y 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N O N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 R C N 290 N O N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N N Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N C N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing Y 229 N doub Y 230 N sing Y 231 N sing N 232 N sing Y 233 N doub N 234 N sing Y 235 N doub N 236 N sing Y 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N sing Y 307 N doub N 308 N sing Y 309 N doub N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing To be published 0353 Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution 10.2210/pdb4iej/pdb pdb_00004iej 100 1 Rhodium-coated vertical and horizontal focusing mirrors, liquid-nitrogen cooled double crystal Si(111) monochromator PIXEL 2012-05-31 DECTRIS PILATUS 6M double crystal Si(111) SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 BL12-2 SSRL 0.9795 SYNCHROTRON SSRL BEAMLINE BL12-2 11216.549 DNA methyltransferase 1-associated protein 1 SANT domain containing residues 121-212 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 76 nat water DNMAP1, DNMT1-associated protein 1 no no GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD GGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC AKLANVRAVPGTD A JCSG-423958 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample BC008053, DMAP1, KIAA1425 9606 Homo sapiens 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.06 40.42 VAPOR DIFFUSION, SITTING DROP 0.20M calcium chloride 20.00% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology Partnership for T-Cell Biology TCELL PSI:Biology software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Structure summary Structure summary Refinement description Database references Derived calculations Data collection Refinement description 1 0 2013-01-02 1 1 2013-01-09 1 2 2013-01-16 1 3 2017-11-15 1 4 2023-02-01 1 5 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-12-13 REL REL CA CALCIUM ION HOH water THE CONSTRUCT (121-212) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 3HM5 PDB experimental model CA 469 2 CA CA 301 A HOH 470 3 HOH HOH 401 A HOH 471 3 HOH HOH 402 A HOH 472 3 HOH HOH 403 A HOH 473 3 HOH HOH 404 A HOH 474 3 HOH HOH 405 A HOH 475 3 HOH HOH 406 A HOH 476 3 HOH HOH 407 A HOH 477 3 HOH HOH 408 A HOH 478 3 HOH HOH 409 A HOH 479 3 HOH HOH 410 A HOH 480 3 HOH HOH 411 A HOH 481 3 HOH HOH 412 A HOH 482 3 HOH HOH 413 A HOH 483 3 HOH HOH 414 A HOH 484 3 HOH HOH 415 A HOH 485 3 HOH HOH 416 A HOH 486 3 HOH HOH 417 A HOH 487 3 HOH HOH 418 A HOH 488 3 HOH HOH 419 A HOH 489 3 HOH HOH 420 A HOH 490 3 HOH HOH 421 A HOH 491 3 HOH HOH 422 A HOH 492 3 HOH HOH 423 A HOH 493 3 HOH HOH 424 A HOH 494 3 HOH HOH 425 A HOH 495 3 HOH HOH 426 A HOH 496 3 HOH HOH 427 A HOH 497 3 HOH HOH 428 A HOH 498 3 HOH HOH 429 A HOH 499 3 HOH HOH 430 A HOH 500 3 HOH HOH 431 A HOH 501 3 HOH HOH 432 A HOH 502 3 HOH HOH 433 A HOH 503 3 HOH HOH 434 A HOH 504 3 HOH HOH 435 A HOH 505 3 HOH HOH 436 A HOH 506 3 HOH HOH 437 A HOH 507 3 HOH HOH 438 A HOH 508 3 HOH HOH 439 A HOH 509 3 HOH HOH 440 A HOH 510 3 HOH HOH 441 A HOH 511 3 HOH HOH 442 A HOH 512 3 HOH HOH 443 A HOH 513 3 HOH HOH 444 A HOH 514 3 HOH HOH 445 A HOH 515 3 HOH HOH 446 A HOH 516 3 HOH HOH 447 A HOH 517 3 HOH HOH 448 A HOH 518 3 HOH HOH 449 A HOH 519 3 HOH HOH 450 A HOH 520 3 HOH HOH 451 A HOH 521 3 HOH HOH 452 A HOH 522 3 HOH HOH 453 A HOH 523 3 HOH HOH 454 A HOH 524 3 HOH HOH 455 A HOH 525 3 HOH HOH 456 A HOH 526 3 HOH HOH 457 A HOH 527 3 HOH HOH 458 A HOH 528 3 HOH HOH 459 A HOH 529 3 HOH HOH 460 A HOH 530 3 HOH HOH 461 A HOH 531 3 HOH HOH 462 A HOH 532 3 HOH HOH 463 A HOH 533 3 HOH HOH 464 A HOH 534 3 HOH HOH 465 A HOH 535 3 HOH HOH 466 A HOH 536 3 HOH HOH 467 A HOH 537 3 HOH HOH 468 A HOH 538 3 HOH HOH 469 A HOH 539 3 HOH HOH 470 A HOH 540 3 HOH HOH 471 A HOH 541 3 HOH HOH 472 A HOH 542 3 HOH HOH 473 A HOH 543 3 HOH HOH 474 A HOH 544 3 HOH HOH 475 A HOH 545 3 HOH HOH 476 A n 1 0 A n 2 121 A n 3 122 A n 4 123 A n 5 124 A n 6 125 A n 7 126 A n 8 127 A n 9 128 A n 10 129 A n 11 130 A n 12 131 A n 13 132 A VAL 133 n 14 VAL 133 A GLN 134 n 15 GLN 134 A VAL 135 n 16 VAL 135 A PRO 136 n 17 PRO 136 A VAL 137 n 18 VAL 137 A TYR 138 n 19 TYR 138 A SER 139 n 20 SER 139 A GLU 140 n 21 GLU 140 A GLN 141 n 22 GLN 141 A GLU 142 n 23 GLU 142 A TYR 143 n 24 TYR 143 A GLN 144 n 25 GLN 144 A LEU 145 n 26 LEU 145 A TYR 146 n 27 TYR 146 A LEU 147 n 28 LEU 147 A HIS 148 n 29 HIS 148 A ASP 149 n 30 ASP 149 A ASP 150 n 31 ASP 150 A ALA 151 n 32 ALA 151 A TRP 152 n 33 TRP 152 A THR 153 n 34 THR 153 A LYS 154 n 35 LYS 154 A ALA 155 n 36 ALA 155 A GLU 156 n 37 GLU 156 A THR 157 n 38 THR 157 A ASP 158 n 39 ASP 158 A HIS 159 n 40 HIS 159 A LEU 160 n 41 LEU 160 A PHE 161 n 42 PHE 161 A ASP 162 n 43 ASP 162 A LEU 163 n 44 LEU 163 A SER 164 n 45 SER 164 A ARG 165 n 46 ARG 165 A ARG 166 n 47 ARG 166 A PHE 167 n 48 PHE 167 A ASP 168 n 49 ASP 168 A LEU 169 n 50 LEU 169 A ARG 170 n 51 ARG 170 A PHE 171 n 52 PHE 171 A VAL 172 n 53 VAL 172 A VAL 173 n 54 VAL 173 A ILE 174 n 55 ILE 174 A HIS 175 n 56 HIS 175 A ASP 176 n 57 ASP 176 A ARG 177 n 58 ARG 177 A TYR 178 n 59 TYR 178 A ASP 179 n 60 ASP 179 A HIS 180 n 61 HIS 180 A GLN 181 n 62 GLN 181 A GLN 182 n 63 GLN 182 A PHE 183 n 64 PHE 183 A LYS 184 n 65 LYS 184 A LYS 185 n 66 LYS 185 A ARG 186 n 67 ARG 186 A SER 187 n 68 SER 187 A VAL 188 n 69 VAL 188 A GLU 189 n 70 GLU 189 A ASP 190 n 71 ASP 190 A LEU 191 n 72 LEU 191 A LYS 192 n 73 LYS 192 A GLU 193 n 74 GLU 193 A ARG 194 n 75 ARG 194 A TYR 195 n 76 TYR 195 A TYR 196 n 77 TYR 196 A HIS 197 n 78 HIS 197 A ILE 198 n 79 ILE 198 A CYS 199 n 80 CYS 199 A ALA 200 n 81 ALA 200 A LYS 201 n 82 LYS 201 A LEU 202 n 83 LEU 202 A ALA 203 n 84 ALA 203 A ASN 204 n 85 ASN 204 A VAL 205 n 86 VAL 205 A ARG 206 n 87 ARG 206 A ALA 207 n 88 ALA 207 A n 89 208 A n 90 209 A n 91 210 A n 92 211 A n 93 212 A 1.1018 -0.0185 0.3331 2.1430 -0.0450 6.3766 -0.0223 -0.0360 -0.0515 0.1197 -0.0648 -0.0139 -0.1000 -0.4342 0.0871 -0.0424 0.0191 -0.0041 -0.0414 -0.0109 -0.1080 refined 4.3298 24.2719 6.9730 X-RAY DIFFRACTION A 133 A 207 X-RAY DIFFRACTION 1 { A|133 - A|207 } author_defined_assembly 1 monomeric A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 A ASP 168 A OD1 ASP 49 1_555 89.2 A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 A HOH 412 C O HOH 1_555 75.2 A ASP 168 A OD1 ASP 49 1_555 A CA 301 B CA CA 1_555 A HOH 412 C O HOH 1_555 97.8 A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 A HOH 419 C O HOH 1_555 78.0 A ASP 168 A OD1 ASP 49 1_555 A CA 301 B CA CA 1_555 A HOH 419 C O HOH 1_555 87.5 A HOH 412 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 419 C O HOH 1_555 152.6 A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 A HOH 471 C O HOH 1_555 155.9 A ASP 168 A OD1 ASP 49 1_555 A CA 301 B CA CA 1_555 A HOH 471 C O HOH 1_555 106.1 A HOH 412 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 471 C O HOH 1_555 84.1 A HOH 419 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 471 C O HOH 1_555 120.3 A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 135.6 A ASP 168 A OD1 ASP 49 1_555 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 57.4 A HOH 412 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 132.4 A HOH 419 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 72.6 A HOH 471 C O HOH 1_555 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 68.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 413 C HOH 1 A GLY 0 A GLY 1 1 Y 1 A GLY 121 A GLY 2 1 Y 1 A LYS 122 A LYS 3 1 Y 1 A ASP 123 A ASP 4 1 Y 1 A TYR 124 A TYR 5 1 Y 1 A PRO 125 A PRO 6 1 Y 1 A PHE 126 A PHE 7 1 Y 1 A ALA 127 A ALA 8 1 Y 1 A ARG 128 A ARG 9 1 Y 1 A PHE 129 A PHE 10 1 Y 1 A ASN 130 A ASN 11 1 Y 1 A LYS 131 A LYS 12 1 Y 1 A THR 132 A THR 13 1 Y 1 A VAL 208 A VAL 89 1 Y 1 A PRO 209 A PRO 90 1 Y 1 A GLY 210 A GLY 91 1 Y 1 A THR 211 A THR 92 1 Y 1 A ASP 212 A ASP 93 1 Y 112.380 36.2049 17.680 -2.9136 0.0000 0.0000 -2.9136 0.0000 5.8272 0.9512 0.9482 1. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 2. CALCIUM ION MODELED IS PRESENT IN CRYSTALLIZATION BUFFER. 0.2259 0.1970 0.1984 1.4500 38.327 920 18079 5.0900 99.7800 1.000 0.300 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 3hm5 0.251 1.4500 38.327 76 732 1 0 655 371 SINUSOIDAL 2.000 23 HARMONIC 2.000 120 HARMONIC 5.000 747 HARMONIC 20.000 0 SEMIHARMONIC 5.000 89 SEMIHARMONIC 5.000 882 SEMIHARMONIC 4.000 0.010 747 HARMONIC 2.000 0.920 1023 HARMONIC 2.000 3.810 2.900 0.2340 0.2231 0.2237 1.5400 163 2649 2812 9 5.8000 99.7800 23.311 1.45 38.327 4IEJ 18199 -3.000 0.050 1 18.990 99.700 0.984 1.450 1.500 2.3 15770 1696 1 99.700 0.757 1.500 1.560 3.0 15901 1763 1 99.900 0.533 1.560 1.630 4.2 15565 1733 1 99.900 0.350 1.630 1.720 6.4 17124 1837 1 99.800 0.239 1.720 1.830 9.3 16332 1804 1 99.900 0.140 1.830 1.970 14.3 15716 1775 1 99.400 0.080 1.970 2.170 23.5 16795 1818 1 100.000 0.053 2.170 2.480 32.4 15603 1799 1 99.400 0.043 2.480 3.120 41.4 16570 1880 1 99.900 0.035 3.120 38.327 46.0 15913 2094 1 99.200 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing MOLREP data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package March 15, 2012 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS refinement BUSTER 2.10.0 Crystal structure of a DNA methyltransferase 1 associated protein 1 (DMAP1) from Homo sapiens at 1.45 A resolution 1 N N 2 N N 3 N N A SER 139 A SER 20 HELX_P A LEU 147 A LEU 28 1 1 9 A THR 153 A THR 34 HELX_P A PHE 167 A PHE 48 1 2 15 A ARG 170 A ARG 51 HELX_P A TYR 178 A TYR 59 1 3 9 A SER 187 A SER 68 HELX_P A ARG 206 A ARG 87 1 4 20 metalc 2.416 A ARG 165 A O ARG 46 1_555 A CA 301 B CA CA 1_555 metalc 2.943 A ASP 168 A OD1 ASP 49 1_555 A CA 301 B CA CA 1_555 metalc 2.170 A CA 301 B CA CA 1_555 A HOH 412 C O HOH 1_555 metalc 2.654 A CA 301 B CA CA 1_555 A HOH 419 C O HOH 1_555 metalc 2.383 A CA 301 B CA CA 1_555 A HOH 471 C O HOH 1_555 metalc 2.570 A CA 301 B CA CA 1_555 A HOH 473 C O HOH 1_555 TRANSCRIPTION DNA methylation, chromatin regulator, repressor, Structural Genomics, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION DMAP1_HUMAN UNP 1 121 Q9NPF5 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA KLANVRAVPGTD 121 212 4IEJ 121 212 Q9NPF5 A 1 2 93 1 expression tag GLY 0 4IEJ A Q9NPF5 UNP 1 BINDING SITE FOR RESIDUE CA A 301 A CA 301 Software 7 A ARG 165 A ARG 46 7 1_555 A ASP 168 A ASP 49 7 1_555 A ASP 176 A ASP 57 7 8_665 A HOH 412 C HOH 7 1_555 A HOH 419 C HOH 7 1_555 A HOH 471 C HOH 7 1_555 A HOH 473 C HOH 7 1_555 178 P 61 2 2