1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Marvin, D.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N C N 64 N O N 65 N N N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 S C N 111 N C N 112 N C N 113 N C N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N C N 135 N C N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N C N 158 N N N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N S N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N O N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 R C N 214 N O N 215 N C N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N sing Y 231 N doub N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 51 792 804 10.1107/S0907444995003027 15299811 Pf1 filamentous bacteriophage: refinement of a molecular model by simulated annealing using 3.3 A resolution X-ray fibre diffraction data. 1995 US Phase Transitions PHTRDP 1101 0141-1594 39 45 Two Forms of Pf1 Inovirus: X-Ray Diffraction Studies on a Structural Phase Transition and a Calculated Libration Normal Mode of the Asymmetric Unit 1992 UK Int.J.Biol.Macromol. IJBMDR 0708 0141-8130 12 125 Model-Building Studies of Inovirus: Genetic Variations on a Geometric Theme 1990 UK Int.J.Biol.Macromol. IJBMDR 0708 0141-8130 11 159 Dynamics of Telescoping Inovirus: A Mechanism for Assembly at Membrane Adhesions 1989 10.2210/pdb4ifm/pdb pdb_00004ifm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 MAJOR COAT PROTEIN ASSEMBLY IN THE LOWER-TEMPERATURE SYMMETRY 4612.393 PF1 FILAMENTOUS BACTERIOPHAGE 1 nat polymer PF1 INOVIRUS no no GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n GROWN IN PSEUDOMONAS AERUGINOSA Inovirus sample 10871 Pseudomonas phage Pf1 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1996-01-01 1 1 2008-03-03 1 2 2011-07-13 1 3 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.type Y BNL 1995-01-16 REL REL 1 no 1 35 3.050000 65.915000 GLY 1 n 1 GLY 1 A VAL 2 n 2 VAL 2 A ILE 3 n 3 ILE 3 A ASP 4 n 4 ASP 4 A THR 5 n 5 THR 5 A SER 6 n 6 SER 6 A ALA 7 n 7 ALA 7 A VAL 8 n 8 VAL 8 A GLU 9 n 9 GLU 9 A SER 10 n 10 SER 10 A ALA 11 n 11 ALA 11 A ILE 12 n 12 ILE 12 A THR 13 n 13 THR 13 A ASP 14 n 14 ASP 14 A GLY 15 n 15 GLY 15 A GLN 16 n 16 GLN 16 A GLY 17 n 17 GLY 17 A ASP 18 n 18 ASP 18 A MET 19 n 19 MET 19 A LYS 20 n 20 LYS 20 A ALA 21 n 21 ALA 21 A ILE 22 n 22 ILE 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A TYR 25 n 25 TYR 25 A ILE 26 n 26 ILE 26 A VAL 27 n 27 VAL 27 A GLY 28 n 28 GLY 28 A ALA 29 n 29 ALA 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A ILE 32 n 32 ILE 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A ALA 36 n 36 ALA 36 A GLY 37 n 37 GLY 37 A LEU 38 n 38 LEU 38 A ILE 39 n 39 ILE 39 A TYR 40 n 40 TYR 40 A SER 41 n 41 SER 41 A MET 42 n 42 MET 42 A LEU 43 n 43 LEU 43 A ARG 44 n 44 ARG 44 A LYS 45 n 45 LYS 45 A ALA 46 n 46 ALA 46 A representative helical assembly 35 helical helical asymmetric unit 1 monomeric helical asymmetric unit, std helical frame 1 monomeric 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 1_555 x,y,z identity operation 0.00000 0.00000 0.00000 0.75978219 0.65017769 0.00000000 -0.65017769 0.75978219 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -51.85000 0.90363453 -0.42830438 0.00000000 0.42830438 0.90363453 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -48.80000 -0.02225111 -0.99975241 0.00000000 0.99975241 -0.02225111 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -45.75000 -0.92179550 -0.38767648 0.00000000 0.38767648 -0.92179550 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -42.70000 -0.73010265 0.68333749 0.00000000 -0.68333749 -0.73010265 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -39.65000 0.32589818 0.94540487 0.00000000 -0.94540487 0.32589818 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -36.60000 0.99609518 0.08828583 0.00000000 -0.08828583 0.99609518 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -33.55000 0.48709771 -0.87334748 0.00000000 0.87334748 0.48709771 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -30.50000 -0.59853435 -0.80109714 0.00000000 0.80109714 -0.59853435 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -27.45000 -0.97561123 0.21950567 0.00000000 -0.21950567 -0.97561123 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -24.40000 -0.19774288 0.98025392 0.00000000 -0.98025392 -0.19774288 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -21.35000 0.81421686 0.58056086 0.00000000 -0.58056086 0.81421686 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -18.30000 0.86229279 -0.50641006 0.00000000 0.50641006 0.86229279 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -15.25000 -0.11042820 -0.99388410 0.00000000 0.99388410 -0.11042820 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -12.20000 -0.95242240 -0.30478119 0.00000000 0.30478119 -0.95242240 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -9.15000 -0.66692271 0.74512690 0.00000000 -0.74512690 -0.66692271 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -6.10000 0.40809147 0.91294105 0.00000000 -0.91294105 0.40809147 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -3.05000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 1_555 x,y,z identity operation 0.00000 0.00000 -0.00000 0.40809147 -0.91294105 0.00000000 0.91294105 0.40809147 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 3.05000 -0.66692271 -0.74512690 0.00000000 0.74512690 -0.66692271 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 6.10000 -0.95242240 0.30478119 0.00000000 -0.30478119 -0.95242240 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 9.15000 -0.11042820 0.99388410 0.00000000 -0.99388410 -0.11042820 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 12.20000 0.86229279 0.50641006 0.00000000 -0.50641006 0.86229279 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 15.25000 0.81421686 -0.58056086 0.00000000 0.58056086 0.81421686 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 18.30000 -0.19774288 -0.98025392 0.00000000 0.98025392 -0.19774288 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 21.35000 -0.97561123 -0.21950567 0.00000000 0.21950567 -0.97561123 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 24.40000 -0.59853435 0.80109714 0.00000000 -0.80109714 -0.59853435 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 27.45000 0.48709771 0.87334748 0.00000000 -0.87334748 0.48709771 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 30.50000 0.99609518 -0.08828583 0.00000000 0.08828583 0.99609518 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 33.55000 0.32589818 -0.94540487 0.00000000 0.94540487 0.32589818 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 36.60000 -0.73010265 -0.68333749 0.00000000 0.68333749 -0.73010265 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 39.65000 -0.92179550 0.38767648 0.00000000 -0.38767648 -0.92179550 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 42.70000 -0.02225111 0.99975241 0.00000000 -0.99975241 -0.02225111 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 45.75000 0.90363453 0.42830438 0.00000000 -0.42830438 0.90363453 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 48.80000 0.75978219 -0.65017769 0.00000000 0.65017769 0.75978219 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 51.85000 1 A VAL 2 161.65 -171.91 1 A ILE 3 173.52 98.49 1 A THR 5 -91.33 46.81 1 A SER 10 -61.45 -76.83 1 A ALA 11 -36.48 -37.15 COORDINATES ARE GIVEN FOR A SINGLE ASYMMETRIC UNIT OF THE COAT PROTEIN ASSEMBLY. THE COMPLETE PROTEIN ASSEMBLY CONTAINS SEVERAL THOUSAND ASYMMETRIC UNITS; THE EXACT NUMBER DEPENDS ON THE LENGTH OF THE DNA. THE PROTEIN ASSEMBLY FORMS A CYLINDRICAL SHELL SURROUNDING A DNA CORE. 3.3 1 3.3 0 322 0 0 322 model building X-PLOR refinement X-PLOR phasing X-PLOR PF1 FILAMENTOUS BACTERIOPHAGE: REFINEMENT OF A MOLECULAR MODEL BY SIMULATED ANNEALING USING 3.3 ANGSTROMS RESOLUTION X-RAY FIBRE DIFFRACTION DATA 1 Y N A SER 6 A SER 6 HELX_P A LEU 43 A LEU 43 1 1 38 VIRUS VIRUS COAT PROTEIN, Helical virus, Virus COATB_BPPF1 UNP 1 1 P03621 MKAMKQRIAKFSPVASFRNLCIAGSVTAATSLPAFAGVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLR KA 37 82 4IFM 1 46 P03621 A 1 1 46 1 P 1