0.006390 0.000000 0.000000 0.000000 0.006390 0.000000 0.000000 0.000000 0.007066 0.000000 0.000000 0.000000 Alanazi, A. Momany, C. Neidle, E.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.000 90.000 90.000 156.493 156.493 141.525 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H2 O4 -2 102.046 MALONATE ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N C N 394 N C N 395 N C N 396 N O N 397 N O N 398 N O N 399 N O N 400 N H N 401 N H N 402 N NA N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C N 431 N C N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C N 448 N O N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 R C N 462 N O N 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C N 503 N C N 504 N C N 505 N O N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub N 410 N sing Y 411 N doub N 412 N sing Y 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 69 1995 2007 10.1107/S0907444913017320 24100318 The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. 2013 UK MOL.MICROBIOL. MOMIEE 2007 0950-382X 72(4) 881 894 19400783 Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1. 2009 UK J.Mol.Biol. JMOBAK 0070 0022-2836 367(3) 616 629 17291527 Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator 2007 DK Acta Crystallogr.,Sect.F 1744-3091 63(Pt 5) 361 368 17565172 Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family.r 2007 10.2210/pdb4ihs/pdb pdb_00004ihs 100 1 CCD 2008-07-23 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.99999 1.0 22-BM APS 0.99999 SYNCHROTRON APS BEAMLINE 22-BM 10937.559 HTH-type transcriptional regulator BenM UNP residues 1-87 4 man polymer 7636.969 catB site 1 DNA 2 syn polymer 7713.048 catB site 1 DNA - complement 2 syn polymer 102.046 MALONATE ION 2 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 20 nat water Ben and cat operon transcriptional regulator, Transcriptional Regulator BenM DNA Binding Domain no no MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIASGHHHHHH MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIASGHHHHHH A,B,C,D polypeptide(L) no no (DT)(DT)(DT)(DA)(DT)(DA)(DT)(DA)(DC)(DC)(DT)(DT)(DT)(DT)(DT)(DA)(DG)(DT)(DA)(DT) (DG)(DC)(DA)(DA)(DA) TTTATATACCTTTTTAGTATGCAAA E,G polydeoxyribonucleotide no no (DT)(DT)(DT)(DG)(DC)(DA)(DT)(DA)(DC)(DT)(DA)(DA)(DA)(DA)(DA)(DG)(DG)(DT)(DA)(DT) (DA)(DT)(DA)(DA)(DA) TTTGCATACTAAAAAGGTATATAAA F,H polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ADP1 sample ACIAD1435, benM, benR 62977 Acinetobacter sp. 469008 Escherichia coli BL21(DE3)RIL plasmid pET21B 1 5.82 78.86 MICROBATCH UNDER OIL 6 Equal volumes of precipitant, protein solution and DNA. Precipitant: sodium malonate Crystal Screen C4- 2.4 M sodium malonate pH 6.0. Protein: 20 mM Tris base (pH 8.0), 0.5 M NaCl, 10% glycerol, 150 mM imidazole, 10 mM BME, MICROBATCH UNDER OIL, temperature 288K 288 -13.834 1 20 E 1 F 25 3.769 E_DT1:DA25_F 1 -30.442 -0.511 0.519 -0.031 -0.780 1 20 E 2 F 24 1.846 E_DT2:DA24_F 2 -14.460 0.064 0.017 -0.139 3.218 1 20 E 3 F 23 4.318 E_DT3:DA23_F 3 -3.986 -0.216 -0.570 -0.037 -1.315 1 20 E 4 F 22 2.523 E_DA4:DT22_F 4 -6.990 -0.272 0.108 0.020 -2.215 1 20 E 5 F 21 -4.246 E_DT5:DA21_F 5 -10.880 0.100 0.476 -0.084 -4.063 1 20 E 6 F 20 5.337 E_DA6:DT20_F 6 1.277 -0.567 0.803 -0.045 -3.720 1 20 E 7 F 19 -0.576 E_DT7:DA19_F 7 0.866 -0.022 0.674 -0.156 -0.473 1 20 E 8 F 18 -3.091 E_DA8:DT18_F 8 -7.587 0.027 0.056 -0.058 6.942 1 19 E 9 F 17 2.184 E_DC9:DG17_F 9 -4.977 0.515 -0.330 -0.226 1.272 1 19 E 10 F 16 0.998 E_DC10:DG16_F 10 -6.303 0.158 -0.311 -0.149 -11.375 1 20 E 11 F 15 -2.261 E_DT11:DA15_F 11 -12.378 -0.028 0.360 -0.228 -11.191 1 20 E 12 F 14 -2.936 E_DT12:DA14_F 12 -14.143 -0.163 0.421 -0.208 -3.745 1 20 E 13 F 13 0.784 E_DT13:DA13_F 13 -14.810 0.031 0.284 -0.160 -2.782 1 20 E 14 F 12 1.499 E_DT14:DA12_F 14 -14.686 -0.064 0.189 -0.267 5.965 1 20 E 15 F 11 0.774 E_DT15:DA11_F 15 -8.198 0.166 -0.300 -0.280 -6.207 1 20 E 16 F 10 0.051 E_DA16:DT10_F 16 -3.563 -0.214 0.096 -0.140 -9.625 1 19 E 17 F 9 2.814 E_DG17:DC9_F 17 -8.919 -0.347 -0.184 -0.145 -4.206 1 20 E 18 F 8 -1.595 E_DT18:DA8_F 18 -3.384 -0.189 0.005 -0.178 -3.199 1 20 E 19 F 7 -3.232 E_DA19:DT7_F 19 -6.644 0.232 -0.158 -0.025 7.799 1 20 E 20 F 6 4.050 E_DT20:DA6_F 20 0.125 0.174 0.100 -0.197 -9.535 1 19 E 21 F 5 0.189 E_DG21:DC5_F 21 -4.642 0.058 -0.123 0.006 2.573 1 19 E 22 F 4 7.559 E_DC22:DG4_F 22 -5.800 0.152 -0.148 0.004 0.449 1 20 E 23 F 3 8.526 E_DA23:DT3_F 23 -12.047 0.016 0.005 -0.052 3.327 1 20 E 24 F 2 5.853 E_DA24:DT2_F 24 -20.167 -0.075 -0.153 -0.076 25.158 1 20 E 25 F 1 1.445 E_DA25:DT1_F 25 -20.606 0.446 0.662 0.191 -12.302 1 20 G 1 H 25 7.176 G_DT1:DA25_H 26 -20.722 0.214 0.422 0.033 -8.033 1 20 G 2 H 24 6.189 G_DT2:DA24_H 27 -10.993 0.283 0.335 -0.076 0.368 1 20 G 3 H 23 3.819 G_DT3:DA23_H 28 -10.597 -0.196 -0.137 -0.177 -0.445 1 20 G 4 H 22 1.442 G_DA4:DT22_H 29 -4.534 -0.407 0.112 -0.208 4.355 1 20 G 5 H 21 -2.268 G_DT5:DA21_H 30 -10.756 0.161 -0.079 -0.159 -6.062 1 20 G 6 H 20 2.253 G_DA6:DT20_H 31 -3.589 -0.252 0.247 -0.118 -1.346 1 20 G 7 H 19 0.121 G_DT7:DA19_H 32 0.440 -0.003 0.284 -0.181 -1.438 1 20 G 8 H 18 -2.337 G_DA8:DT18_H 33 -1.273 0.240 0.065 -0.150 1.411 1 19 G 9 H 17 3.547 G_DC9:DG17_H 34 3.962 0.649 0.272 -0.194 -0.808 1 19 G 10 H 16 8.773 G_DC10:DG16_H 35 -9.646 0.377 0.221 -0.100 -5.109 1 20 G 11 H 15 1.553 G_DT11:DA15_H 36 -4.196 0.033 0.291 -0.323 -5.227 1 20 G 12 H 14 -3.118 G_DT12:DA14_H 37 -8.735 -0.203 0.418 -0.251 -3.909 1 20 G 13 H 13 -3.773 G_DT13:DA13_H 38 -11.931 -0.032 0.359 -0.241 0.587 1 20 G 14 H 12 0.484 G_DT14:DA12_H 39 -9.454 -0.004 0.219 -0.180 -0.274 1 20 G 15 H 11 2.645 G_DT15:DA11_H 40 -7.121 0.204 0.091 -0.216 0.447 1 20 G 16 H 10 3.731 G_DA16:DT10_H 41 -1.860 0.117 0.238 -0.133 -1.215 1 19 G 17 H 9 2.851 G_DG17:DC9_H 42 -4.903 -0.340 0.046 -0.182 -3.860 1 20 G 18 H 8 0.251 G_DT18:DA8_H 43 -3.717 -0.297 -0.100 -0.100 -3.225 1 20 G 19 H 7 -1.337 G_DA19:DT7_H 44 2.960 0.238 -0.126 -0.150 9.797 1 20 G 20 H 6 4.806 G_DT20:DA6_H 45 5.499 0.283 -0.371 -0.217 -8.917 1 19 G 21 H 5 2.729 G_DG21:DC5_H 46 -1.809 -0.302 -0.502 0.044 13.450 1 19 G 22 H 4 5.911 G_DC22:DG4_H 47 -1.117 -0.042 -0.427 0.245 5.521 1 20 G 23 H 3 0.541 G_DA23:DT3_H 48 -9.879 -0.264 -0.002 -0.166 3.015 1 20 G 24 H 2 3.820 G_DA24:DT2_H 49 -16.834 0.038 0.124 0.039 16.203 1 20 G 25 H 1 0.392 G_DA25:DT1_H 50 -21.172 0.072 0.726 -0.105 2.847 41.831 E E 1 2 4.644 F F 25 24 2.882 3.311 -0.001 -0.298 EE_DT1DT2:DA24DA25_FF 1 2.464 -3.456 41.636 -0.722 0.228 3.206 34.878 E E 2 3 -5.993 F F 24 23 3.116 -3.555 0.829 0.013 EE_DT2DT3:DA23DA24_FF 2 8.061 -13.587 33.780 0.552 -0.182 3.410 36.200 E E 3 4 5.897 F F 23 22 3.415 3.657 0.339 0.286 EE_DT3DA4:DT22DA23_FF 3 -1.522 2.455 35.990 -0.078 -0.769 3.320 36.716 E E 4 5 3.391 F F 22 21 3.327 2.134 -0.693 -0.642 EE_DA4DT5:DA21DT22_FF 4 -2.148 3.414 36.596 -1.316 0.801 3.079 40.579 E E 5 6 -13.851 F F 21 20 3.156 -9.512 0.493 -0.257 EE_DT5DA6:DT20DA21_FF 5 -3.641 5.302 39.333 0.657 -1.104 3.399 32.790 E E 6 7 -2.111 F F 20 19 3.366 -1.191 -0.901 -1.104 EE_DA6DT7:DA19DT20_FF 6 0.156 -0.277 32.768 -1.744 1.624 3.032 35.022 E E 7 8 -2.253 F F 19 18 3.062 -1.352 -0.188 -0.613 EE_DT7DA8:DT18DA19_FF 7 4.742 -7.904 34.684 -0.828 0.981 3.095 34.679 E E 8 9 6.706 F F 18 17 3.114 3.986 0.839 -0.399 EE_DA8DC9:DG17DT18_FF 8 2.154 -3.624 34.391 -1.253 -1.093 3.348 34.262 E E 9 10 9.540 F F 17 16 3.488 5.593 0.405 -0.713 EE_DC9DC10:DG16DG17_FF 9 2.039 -3.478 33.757 -2.136 -0.350 3.718 35.483 E E 10 11 0.141 F F 16 15 3.700 0.086 -0.453 -0.836 EE_DC10DT11:DA15DG16_FF 10 -2.032 3.335 35.427 -1.386 0.406 3.229 38.021 E E 11 12 -10.521 F F 15 14 3.201 -6.820 -0.051 -0.444 EE_DT11DT12:DA14DA15_FF 11 0.139 -0.214 37.426 0.178 0.096 3.087 35.990 E E 12 13 -11.249 F F 14 13 3.040 -6.910 -0.118 -0.538 EE_DT12DT13:DA13DA14_FF 12 0.070 -0.113 35.342 0.058 0.200 3.192 35.382 E E 13 14 -10.811 F F 13 12 3.161 -6.535 0.061 -0.458 EE_DT13DT14:DA12DA13_FF 13 0.677 -1.119 34.786 0.189 -0.003 3.094 36.849 E E 14 15 -8.946 F F 12 11 3.089 -5.632 0.033 -0.267 EE_DT14DT15:DA11DA12_FF 14 1.645 -2.613 36.395 0.304 0.160 3.555 36.810 E E 15 16 -0.579 F F 11 10 3.567 -0.365 -0.038 -0.414 EE_DT15DA16:DT10DA11_FF 15 -4.026 6.388 36.595 -0.601 -0.537 3.424 36.690 E E 16 17 2.246 F F 10 9 3.451 1.413 0.022 -0.675 EE_DA16DG17:DC9DT10_FF 16 0.275 -0.436 36.662 -1.276 0.005 3.080 32.406 E E 17 18 4.231 F F 9 8 3.119 2.359 -0.595 -0.691 EE_DG17DT18:DA8DC9_FF 17 -1.108 1.987 32.304 -1.633 0.882 3.135 37.529 E E 18 19 7.991 F F 8 7 3.202 5.125 0.074 -0.300 EE_DT18DA19:DT7DA8_FF 18 1.479 -2.306 37.162 -1.118 0.073 3.002 28.158 E E 19 20 -2.215 F F 7 6 3.037 -1.077 1.067 -0.823 EE_DA19DT20:DA6DT7_FF 19 -1.579 3.249 28.095 -1.459 -2.534 3.712 40.648 E E 20 21 -2.964 F F 6 5 3.730 -2.057 -0.384 -0.323 EE_DT20DG21:DC5DA6_FF 20 2.524 -3.636 40.523 -0.205 0.872 3.158 35.513 E E 21 22 -1.303 F F 5 4 3.090 -0.794 1.012 0.107 EE_DG21DC22:DG4DC5_FF 21 2.960 -4.859 35.385 0.286 -1.245 3.429 35.235 E E 22 23 9.387 F F 4 3 3.375 5.659 -0.214 0.590 EE_DC22DA23:DT3DG4_FF 22 -0.583 0.967 34.788 0.095 0.262 3.114 37.536 E E 23 24 6.795 F F 3 2 3.079 4.362 -0.753 0.210 EE_DA23DA24:DT2DT3_FF 23 -1.801 2.806 37.249 -0.215 0.947 2.637 36.272 E E 24 25 7.931 F F 2 1 2.722 4.892 0.058 0.012 EE_DA24DA25:DT1DT2_FF 24 -7.285 11.812 35.229 -0.551 -0.942 3.128 40.452 G G 1 2 2.697 H H 25 24 3.154 1.862 -0.007 -0.239 GG_DT1DT2:DA24DA25_HH 25 3.680 -5.330 40.250 -0.547 0.408 3.011 35.160 G G 2 3 -8.855 H H 24 23 3.081 -5.309 0.249 0.262 GG_DT2DT3:DA23DA24_HH 26 5.538 -9.237 34.339 1.180 0.367 3.359 37.352 G G 3 4 3.002 H H 23 22 3.334 1.921 0.138 0.754 GG_DT3DA4:DT22DA23_HH 27 -1.485 2.320 37.276 0.918 -0.416 3.124 37.137 G G 4 5 -1.114 H H 22 21 3.147 -0.709 -0.557 -0.521 GG_DA4DT5:DA21DT22_HH 28 1.915 -3.008 37.082 -0.728 1.120 3.458 41.106 G G 5 6 -6.291 H H 21 20 3.496 -4.408 0.378 -0.002 GG_DT5DA6:DT20DA21_HH 29 -1.855 2.647 40.839 0.507 -0.753 3.204 31.832 G G 6 7 -0.189 H H 20 19 3.172 -0.103 -0.686 -1.065 GG_DA6DT7:DA19DT20_HH 30 -1.517 2.767 31.796 -1.924 0.980 3.147 36.601 G G 7 8 2.182 H H 19 18 3.179 1.369 -0.273 -0.471 GG_DT7DA8:DT18DA19_HH 31 1.530 -2.437 36.546 -0.932 0.638 3.155 33.928 G G 8 9 6.409 H H 18 17 3.318 3.728 0.815 -0.566 GG_DA8DC9:DG17DT18_HH 32 -3.050 5.244 33.594 -1.565 -1.883 3.177 33.260 G G 9 10 5.658 H H 17 16 3.238 3.230 0.569 -0.867 GG_DC9DC10:DG16DG17_HH 33 2.848 -4.988 32.988 -2.047 -0.525 3.420 34.108 G G 10 11 -5.193 H H 16 15 3.374 -3.042 -0.851 -0.805 GG_DC10DT11:DA15DG16_HH 34 0.440 -0.752 33.974 -0.871 1.523 3.311 38.972 G G 11 12 -9.728 H H 15 14 3.259 -6.462 -0.071 -0.587 GG_DT11DT12:DA14DA15_HH 35 -0.313 0.471 38.452 -0.090 0.069 3.203 36.798 G G 12 13 -12.621 H H 14 13 3.170 -7.908 -0.199 -0.527 GG_DT12DT13:DA13DA14_HH 36 1.026 -1.638 35.953 0.226 0.453 3.156 35.347 G G 13 14 -11.981 H H 13 12 3.092 -7.225 0.266 -0.598 GG_DT13DT14:DA12DA13_HH 37 1.257 -2.085 34.601 0.045 -0.260 3.282 37.172 G G 14 15 -6.210 H H 12 11 3.252 -3.950 0.260 -0.383 GG_DT14DT15:DA11DA12_HH 38 1.745 -2.743 36.929 -0.074 -0.174 3.213 37.816 G G 15 16 -5.751 H H 11 10 3.200 -3.720 -0.146 -0.263 GG_DT15DA16:DT10DA11_HH 39 -2.020 3.123 37.586 0.064 -0.031 3.398 35.564 G G 16 17 -1.410 H H 10 9 3.383 -0.861 0.032 -0.693 GG_DA16DG17:DC9DT10_HH 40 -0.156 0.256 35.554 -1.005 -0.076 3.257 32.524 G G 17 18 2.575 H H 9 8 3.337 1.440 -0.472 -0.765 GG_DG17DT18:DA8DC9_HH 41 2.440 -4.362 32.404 -1.620 1.274 3.163 38.097 G G 18 19 8.815 H H 8 7 3.251 5.733 0.272 -0.337 GG_DT18DA19:DT7DA8_HH 42 -0.694 1.068 37.673 -1.232 -0.504 3.148 28.846 G G 19 20 0.417 H H 7 6 3.070 0.208 1.036 -0.718 GG_DA19DT20:DA6DT7_HH 43 2.712 -5.453 28.720 -1.485 -1.505 3.564 38.304 G G 20 21 6.734 H H 6 5 3.677 4.405 -0.428 -0.410 GG_DT20DG21:DC5DA6_HH 44 3.078 -4.705 37.940 -1.238 1.082 2.805 34.460 G G 21 22 3.206 H H 5 4 2.797 1.898 0.640 0.214 GG_DG21DC22:DG4DC5_HH 45 0.069 -0.117 34.409 0.108 -1.071 3.537 35.223 G G 22 23 10.032 H H 4 3 3.462 6.034 -0.763 0.408 GG_DC22DA23:DT3DG4_HH 46 -3.366 5.597 34.560 -0.294 0.721 3.281 39.323 G G 23 24 -0.064 H H 3 2 3.269 -0.043 -0.337 -0.136 GG_DA23DA24:DT2DT3_HH 47 -1.702 2.530 39.288 -0.197 0.299 2.817 36.281 G G 24 25 -3.383 H H 2 1 2.842 -2.099 0.089 -0.306 GG_DA24DA25:DT1DT2_HH 48 -5.061 8.156 35.879 -0.236 -0.759 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-07-10 1 1 2013-10-02 1 2 2014-01-15 1 3 2017-11-15 1 4 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure of BenM DNA binding domain RCSB Y RCSB 2012-12-19 REL REL MLI MALONATE ION NA SODIUM ION HOH water synthetic DNA purchased from IDT sample synthetic DNA purchased from IDT sample 3M1E PDB entry 3M1E PDB experimental model MLI 1 4 MLI MLI 101 A MLI 2 4 MLI MLI 101 C NA 3 5 NA NA 102 C HOH 1 6 HOH HOH 201 A HOH 7 6 HOH HOH 202 A HOH 8 6 HOH HOH 203 A HOH 18 6 HOH HOH 204 A HOH 20 6 HOH HOH 205 A HOH 21 6 HOH HOH 206 A HOH 9 6 HOH HOH 101 B HOH 2 6 HOH HOH 102 B HOH 15 6 HOH HOH 103 B HOH 11 6 HOH HOH 201 C HOH 13 6 HOH HOH 202 C HOH 16 6 HOH HOH 203 C HOH 3 6 HOH HOH 101 D HOH 4 6 HOH HOH 102 D HOH 5 6 HOH HOH 103 D HOH 10 6 HOH HOH 104 D HOH 12 6 HOH HOH 105 D HOH 17 6 HOH HOH 101 E HOH 19 6 HOH HOH 101 F HOH 6 6 HOH HOH 101 H MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A LEU 3 n 3 LEU 3 A ARG 4 n 4 ARG 4 A HIS 5 n 5 HIS 5 A LEU 6 n 6 LEU 6 A ARG 7 n 7 ARG 7 A TYR 8 n 8 TYR 8 A PHE 9 n 9 PHE 9 A VAL 10 n 10 VAL 10 A ALA 11 n 11 ALA 11 A VAL 12 n 12 VAL 12 A VAL 13 n 13 VAL 13 A GLU 14 n 14 GLU 14 A GLU 15 n 15 GLU 15 A GLN 16 n 16 GLN 16 A SER 17 n 17 SER 17 A PHE 18 n 18 PHE 18 A THR 19 n 19 THR 19 A LYS 20 n 20 LYS 20 A ALA 21 n 21 ALA 21 A ALA 22 n 22 ALA 22 A ASP 23 n 23 ASP 23 A LYS 24 n 24 LYS 24 A LEU 25 n 25 LEU 25 A CYS 26 n 26 CYS 26 A ILE 27 n 27 ILE 27 A ALA 28 n 28 ALA 28 A GLN 29 n 29 GLN 29 A PRO 30 n 30 PRO 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A SER 33 n 33 SER 33 A ARG 34 n 34 ARG 34 A GLN 35 n 35 GLN 35 A ILE 36 n 36 ILE 36 A GLN 37 n 37 GLN 37 A ASN 38 n 38 ASN 38 A LEU 39 n 39 LEU 39 A GLU 40 n 40 GLU 40 A GLU 41 n 41 GLU 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A GLY 44 n 44 GLY 44 A ILE 45 n 45 ILE 45 A GLN 46 n 46 GLN 46 A LEU 47 n 47 LEU 47 A LEU 48 n 48 LEU 48 A GLU 49 n 49 GLU 49 A ARG 50 n 50 ARG 50 A GLY 51 n 51 GLY 51 A SER 52 n 52 SER 52 A ARG 53 n 53 ARG 53 A PRO 54 n 54 PRO 54 A VAL 55 n 55 VAL 55 A LYS 56 n 56 LYS 56 A THR 57 n 57 THR 57 A THR 58 n 58 THR 58 A PRO 59 n 59 PRO 59 A GLU 60 n 60 GLU 60 A GLY 61 n 61 GLY 61 A HIS 62 n 62 HIS 62 A PHE 63 n 63 PHE 63 A PHE 64 n 64 PHE 64 A TYR 65 n 65 TYR 65 A GLN 66 n 66 GLN 66 A TYR 67 n 67 TYR 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A LYS 70 n 70 LYS 70 A LEU 71 n 71 LEU 71 A LEU 72 n 72 LEU 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A VAL 75 n 75 VAL 75 A ASP 76 n 76 ASP 76 A GLN 77 n 77 GLN 77 A MET 78 n 78 MET 78 A VAL 79 n 79 VAL 79 A SER 80 n 80 SER 80 A MET 81 n 81 MET 81 A THR 82 n 82 THR 82 A LYS 83 n 83 LYS 83 A ARG 84 n 84 ARG 84 A ILE 85 n 85 ILE 85 A ALA 86 n 86 ALA 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A HIS 89 n 89 HIS 89 A n 90 90 A n 91 91 A n 92 92 A n 93 93 A n 94 94 A MET 1 n 1 MET 1 B GLU 2 n 2 GLU 2 B LEU 3 n 3 LEU 3 B ARG 4 n 4 ARG 4 B HIS 5 n 5 HIS 5 B LEU 6 n 6 LEU 6 B ARG 7 n 7 ARG 7 B TYR 8 n 8 TYR 8 B PHE 9 n 9 PHE 9 B VAL 10 n 10 VAL 10 B ALA 11 n 11 ALA 11 B VAL 12 n 12 VAL 12 B VAL 13 n 13 VAL 13 B GLU 14 n 14 GLU 14 B GLU 15 n 15 GLU 15 B GLN 16 n 16 GLN 16 B SER 17 n 17 SER 17 B PHE 18 n 18 PHE 18 B THR 19 n 19 THR 19 B LYS 20 n 20 LYS 20 B ALA 21 n 21 ALA 21 B ALA 22 n 22 ALA 22 B ASP 23 n 23 ASP 23 B LYS 24 n 24 LYS 24 B LEU 25 n 25 LEU 25 B CYS 26 n 26 CYS 26 B ILE 27 n 27 ILE 27 B ALA 28 n 28 ALA 28 B GLN 29 n 29 GLN 29 B PRO 30 n 30 PRO 30 B PRO 31 n 31 PRO 31 B LEU 32 n 32 LEU 32 B SER 33 n 33 SER 33 B ARG 34 n 34 ARG 34 B GLN 35 n 35 GLN 35 B ILE 36 n 36 ILE 36 B GLN 37 n 37 GLN 37 B ASN 38 n 38 ASN 38 B LEU 39 n 39 LEU 39 B GLU 40 n 40 GLU 40 B GLU 41 n 41 GLU 41 B GLU 42 n 42 GLU 42 B LEU 43 n 43 LEU 43 B GLY 44 n 44 GLY 44 B ILE 45 n 45 ILE 45 B GLN 46 n 46 GLN 46 B LEU 47 n 47 LEU 47 B LEU 48 n 48 LEU 48 B GLU 49 n 49 GLU 49 B ARG 50 n 50 ARG 50 B GLY 51 n 51 GLY 51 B SER 52 n 52 SER 52 B ARG 53 n 53 ARG 53 B PRO 54 n 54 PRO 54 B VAL 55 n 55 VAL 55 B LYS 56 n 56 LYS 56 B THR 57 n 57 THR 57 B THR 58 n 58 THR 58 B PRO 59 n 59 PRO 59 B GLU 60 n 60 GLU 60 B GLY 61 n 61 GLY 61 B HIS 62 n 62 HIS 62 B PHE 63 n 63 PHE 63 B PHE 64 n 64 PHE 64 B TYR 65 n 65 TYR 65 B GLN 66 n 66 GLN 66 B TYR 67 n 67 TYR 67 B ALA 68 n 68 ALA 68 B ILE 69 n 69 ILE 69 B LYS 70 n 70 LYS 70 B LEU 71 n 71 LEU 71 B LEU 72 n 72 LEU 72 B SER 73 n 73 SER 73 B ASN 74 n 74 ASN 74 B VAL 75 n 75 VAL 75 B ASP 76 n 76 ASP 76 B GLN 77 n 77 GLN 77 B MET 78 n 78 MET 78 B VAL 79 n 79 VAL 79 B SER 80 n 80 SER 80 B MET 81 n 81 MET 81 B THR 82 n 82 THR 82 B LYS 83 n 83 LYS 83 B ARG 84 n 84 ARG 84 B ILE 85 n 85 ILE 85 B ALA 86 n 86 ALA 86 B SER 87 n 87 SER 87 B GLY 88 n 88 GLY 88 B HIS 89 n 89 HIS 89 B HIS 90 n 90 HIS 90 B HIS 91 n 91 HIS 91 B HIS 92 n 92 HIS 92 B HIS 93 n 93 HIS 93 B n 94 94 B MET 1 n 1 MET 1 C GLU 2 n 2 GLU 2 C LEU 3 n 3 LEU 3 C ARG 4 n 4 ARG 4 C HIS 5 n 5 HIS 5 C LEU 6 n 6 LEU 6 C ARG 7 n 7 ARG 7 C TYR 8 n 8 TYR 8 C PHE 9 n 9 PHE 9 C VAL 10 n 10 VAL 10 C ALA 11 n 11 ALA 11 C VAL 12 n 12 VAL 12 C VAL 13 n 13 VAL 13 C GLU 14 n 14 GLU 14 C GLU 15 n 15 GLU 15 C GLN 16 n 16 GLN 16 C SER 17 n 17 SER 17 C PHE 18 n 18 PHE 18 C THR 19 n 19 THR 19 C LYS 20 n 20 LYS 20 C ALA 21 n 21 ALA 21 C ALA 22 n 22 ALA 22 C ASP 23 n 23 ASP 23 C LYS 24 n 24 LYS 24 C LEU 25 n 25 LEU 25 C CYS 26 n 26 CYS 26 C ILE 27 n 27 ILE 27 C ALA 28 n 28 ALA 28 C GLN 29 n 29 GLN 29 C PRO 30 n 30 PRO 30 C PRO 31 n 31 PRO 31 C LEU 32 n 32 LEU 32 C SER 33 n 33 SER 33 C ARG 34 n 34 ARG 34 C GLN 35 n 35 GLN 35 C ILE 36 n 36 ILE 36 C GLN 37 n 37 GLN 37 C ASN 38 n 38 ASN 38 C LEU 39 n 39 LEU 39 C GLU 40 n 40 GLU 40 C GLU 41 n 41 GLU 41 C GLU 42 n 42 GLU 42 C LEU 43 n 43 LEU 43 C GLY 44 n 44 GLY 44 C ILE 45 n 45 ILE 45 C GLN 46 n 46 GLN 46 C LEU 47 n 47 LEU 47 C LEU 48 n 48 LEU 48 C GLU 49 n 49 GLU 49 C ARG 50 n 50 ARG 50 C GLY 51 n 51 GLY 51 C SER 52 n 52 SER 52 C ARG 53 n 53 ARG 53 C PRO 54 n 54 PRO 54 C VAL 55 n 55 VAL 55 C LYS 56 n 56 LYS 56 C THR 57 n 57 THR 57 C THR 58 n 58 THR 58 C PRO 59 n 59 PRO 59 C GLU 60 n 60 GLU 60 C GLY 61 n 61 GLY 61 C HIS 62 n 62 HIS 62 C PHE 63 n 63 PHE 63 C PHE 64 n 64 PHE 64 C TYR 65 n 65 TYR 65 C GLN 66 n 66 GLN 66 C TYR 67 n 67 TYR 67 C ALA 68 n 68 ALA 68 C ILE 69 n 69 ILE 69 C LYS 70 n 70 LYS 70 C LEU 71 n 71 LEU 71 C LEU 72 n 72 LEU 72 C SER 73 n 73 SER 73 C ASN 74 n 74 ASN 74 C VAL 75 n 75 VAL 75 C ASP 76 n 76 ASP 76 C GLN 77 n 77 GLN 77 C MET 78 n 78 MET 78 C VAL 79 n 79 VAL 79 C SER 80 n 80 SER 80 C MET 81 n 81 MET 81 C THR 82 n 82 THR 82 C LYS 83 n 83 LYS 83 C ARG 84 n 84 ARG 84 C ILE 85 n 85 ILE 85 C ALA 86 n 86 ALA 86 C SER 87 n 87 SER 87 C GLY 88 n 88 GLY 88 C HIS 89 n 89 HIS 89 C HIS 90 n 90 HIS 90 C n 91 91 C n 92 92 C n 93 93 C n 94 94 C MET 1 n 1 MET 1 D GLU 2 n 2 GLU 2 D LEU 3 n 3 LEU 3 D ARG 4 n 4 ARG 4 D HIS 5 n 5 HIS 5 D LEU 6 n 6 LEU 6 D ARG 7 n 7 ARG 7 D TYR 8 n 8 TYR 8 D PHE 9 n 9 PHE 9 D VAL 10 n 10 VAL 10 D ALA 11 n 11 ALA 11 D VAL 12 n 12 VAL 12 D VAL 13 n 13 VAL 13 D GLU 14 n 14 GLU 14 D GLU 15 n 15 GLU 15 D GLN 16 n 16 GLN 16 D SER 17 n 17 SER 17 D PHE 18 n 18 PHE 18 D THR 19 n 19 THR 19 D LYS 20 n 20 LYS 20 D ALA 21 n 21 ALA 21 D ALA 22 n 22 ALA 22 D ASP 23 n 23 ASP 23 D LYS 24 n 24 LYS 24 D LEU 25 n 25 LEU 25 D CYS 26 n 26 CYS 26 D ILE 27 n 27 ILE 27 D ALA 28 n 28 ALA 28 D GLN 29 n 29 GLN 29 D PRO 30 n 30 PRO 30 D PRO 31 n 31 PRO 31 D LEU 32 n 32 LEU 32 D SER 33 n 33 SER 33 D ARG 34 n 34 ARG 34 D GLN 35 n 35 GLN 35 D ILE 36 n 36 ILE 36 D GLN 37 n 37 GLN 37 D ASN 38 n 38 ASN 38 D LEU 39 n 39 LEU 39 D GLU 40 n 40 GLU 40 D GLU 41 n 41 GLU 41 D GLU 42 n 42 GLU 42 D LEU 43 n 43 LEU 43 D GLY 44 n 44 GLY 44 D ILE 45 n 45 ILE 45 D GLN 46 n 46 GLN 46 D LEU 47 n 47 LEU 47 D LEU 48 n 48 LEU 48 D GLU 49 n 49 GLU 49 D ARG 50 n 50 ARG 50 D GLY 51 n 51 GLY 51 D SER 52 n 52 SER 52 D ARG 53 n 53 ARG 53 D PRO 54 n 54 PRO 54 D VAL 55 n 55 VAL 55 D LYS 56 n 56 LYS 56 D THR 57 n 57 THR 57 D THR 58 n 58 THR 58 D PRO 59 n 59 PRO 59 D GLU 60 n 60 GLU 60 D GLY 61 n 61 GLY 61 D HIS 62 n 62 HIS 62 D PHE 63 n 63 PHE 63 D PHE 64 n 64 PHE 64 D TYR 65 n 65 TYR 65 D GLN 66 n 66 GLN 66 D TYR 67 n 67 TYR 67 D ALA 68 n 68 ALA 68 D ILE 69 n 69 ILE 69 D LYS 70 n 70 LYS 70 D LEU 71 n 71 LEU 71 D LEU 72 n 72 LEU 72 D SER 73 n 73 SER 73 D ASN 74 n 74 ASN 74 D VAL 75 n 75 VAL 75 D ASP 76 n 76 ASP 76 D GLN 77 n 77 GLN 77 D MET 78 n 78 MET 78 D VAL 79 n 79 VAL 79 D SER 80 n 80 SER 80 D MET 81 n 81 MET 81 D THR 82 n 82 THR 82 D LYS 83 n 83 LYS 83 D ARG 84 n 84 ARG 84 D ILE 85 n 85 ILE 85 D ALA 86 n 86 ALA 86 D SER 87 n 87 SER 87 D GLY 88 n 88 GLY 88 D HIS 89 n 89 HIS 89 D n 90 90 D n 91 91 D n 92 92 D n 93 93 D n 94 94 D DT 1 n 1 DT 1 E DT 2 n 2 DT 2 E DT 3 n 3 DT 3 E DA 4 n 4 DA 4 E DT 5 n 5 DT 5 E DA 6 n 6 DA 6 E DT 7 n 7 DT 7 E DA 8 n 8 DA 8 E DC 9 n 9 DC 9 E DC 10 n 10 DC 10 E DT 11 n 11 DT 11 E DT 12 n 12 DT 12 E DT 13 n 13 DT 13 E DT 14 n 14 DT 14 E DT 15 n 15 DT 15 E DA 16 n 16 DA 16 E DG 17 n 17 DG 17 E DT 18 n 18 DT 18 E DA 19 n 19 DA 19 E DT 20 n 20 DT 20 E DG 21 n 21 DG 21 E DC 22 n 22 DC 22 E DA 23 n 23 DA 23 E DA 24 n 24 DA 24 E DA 25 n 25 DA 25 E DT 1 n 1 DT 1 F DT 2 n 2 DT 2 F DT 3 n 3 DT 3 F DG 4 n 4 DG 4 F DC 5 n 5 DC 5 F DA 6 n 6 DA 6 F DT 7 n 7 DT 7 F DA 8 n 8 DA 8 F DC 9 n 9 DC 9 F DT 10 n 10 DT 10 F DA 11 n 11 DA 11 F DA 12 n 12 DA 12 F DA 13 n 13 DA 13 F DA 14 n 14 DA 14 F DA 15 n 15 DA 15 F DG 16 n 16 DG 16 F DG 17 n 17 DG 17 F DT 18 n 18 DT 18 F DA 19 n 19 DA 19 F DT 20 n 20 DT 20 F DA 21 n 21 DA 21 F DT 22 n 22 DT 22 F DA 23 n 23 DA 23 F DA 24 n 24 DA 24 F DA 25 n 25 DA 25 F DT 1 n 1 DT 1 G DT 2 n 2 DT 2 G DT 3 n 3 DT 3 G DA 4 n 4 DA 4 G DT 5 n 5 DT 5 G DA 6 n 6 DA 6 G DT 7 n 7 DT 7 G DA 8 n 8 DA 8 G DC 9 n 9 DC 9 G DC 10 n 10 DC 10 G DT 11 n 11 DT 11 G DT 12 n 12 DT 12 G DT 13 n 13 DT 13 G DT 14 n 14 DT 14 G DT 15 n 15 DT 15 G DA 16 n 16 DA 16 G DG 17 n 17 DG 17 G DT 18 n 18 DT 18 G DA 19 n 19 DA 19 G DT 20 n 20 DT 20 G DG 21 n 21 DG 21 G DC 22 n 22 DC 22 G DA 23 n 23 DA 23 G DA 24 n 24 DA 24 G DA 25 n 25 DA 25 G DT 1 n 1 DT 1 H DT 2 n 2 DT 2 H DT 3 n 3 DT 3 H DG 4 n 4 DG 4 H DC 5 n 5 DC 5 H DA 6 n 6 DA 6 H DT 7 n 7 DT 7 H DA 8 n 8 DA 8 H DC 9 n 9 DC 9 H DT 10 n 10 DT 10 H DA 11 n 11 DA 11 H DA 12 n 12 DA 12 H DA 13 n 13 DA 13 H DA 14 n 14 DA 14 H DA 15 n 15 DA 15 H DG 16 n 16 DG 16 H DG 17 n 17 DG 17 H DT 18 n 18 DT 18 H DA 19 n 19 DA 19 H DT 20 n 20 DT 20 H DA 21 n 21 DA 21 H DT 22 n 22 DT 22 H DA 23 n 23 DA 23 H DA 24 n 24 DA 24 H DA 25 n 25 DA 25 H 6.2433 0.1317 0.0368 5.1009 -0.5381 2.8932 -0.0227 0.0609 -0.0446 -0.2798 0.1602 0.3186 -0.1535 -0.1861 -0.1375 0.1406 -0.0065 -0.0290 0.4420 0.0468 0.1062 refined -13.9433 -9.5411 -54.4561 X-RAY DIFFRACTION 3.3964 4.5217 -6.8980 10.7435 -10.8474 16.4982 -0.4673 -0.3350 -0.7895 -0.0247 -0.5921 -1.4099 0.3759 0.0516 1.0594 0.3896 0.0182 0.0312 0.8151 0.2036 0.6637 refined -5.6288 -21.7672 -43.2598 X-RAY DIFFRACTION 0.6516 0.6713 -0.7806 8.4744 2.3047 13.0093 0.1849 -0.3024 0.1918 1.0544 -0.2747 0.1025 -0.8466 -0.1438 0.0898 0.6835 -0.1595 -0.0395 0.9215 0.0861 0.2705 refined -6.1152 -8.5663 -27.7850 X-RAY DIFFRACTION 2.9825 8.6655 0.7226 40.7539 7.0619 1.9009 -0.4726 -0.0689 0.5304 1.4324 0.4861 1.8930 0.5216 0.0636 -0.0135 1.1102 -0.0231 0.1977 1.3288 0.1594 0.6173 refined -14.8359 -11.8318 -26.5268 X-RAY DIFFRACTION 6.2105 -1.4778 -5.5977 21.0915 3.7435 5.3660 -0.1271 -1.3008 -0.0738 3.4439 0.2146 0.0492 0.5360 0.9957 -0.0875 1.0658 -0.1261 -0.0497 1.3393 0.4674 0.4381 refined -7.9673 -18.5766 -19.2051 X-RAY DIFFRACTION 4.7933 3.9022 -5.0926 7.5459 -8.4366 13.2058 -0.1618 -0.5459 -0.6779 0.4976 -0.9650 -1.1894 -0.1721 0.8332 1.1268 0.3730 -0.0501 -0.0435 0.7032 0.1332 0.4252 refined 0.7089 -14.8061 -39.9771 X-RAY DIFFRACTION 56.8670 20.7685 38.4876 7.6038 14.0636 26.0615 2.5182 0.7968 -5.3087 0.6350 0.7623 -2.0483 1.4835 0.7226 -3.2805 2.2735 -0.2927 0.5043 2.7031 -0.4621 1.5228 refined 10.2951 -8.9190 -57.5560 X-RAY DIFFRACTION 3.1412 -2.4496 -0.1068 3.8490 0.5207 7.5914 0.0234 -0.0796 -0.8640 -0.0456 -0.1168 -0.0981 0.5714 0.4148 0.0934 0.1888 0.0164 0.0098 0.6334 0.2966 0.8616 refined -0.5911 -35.8095 -42.6098 X-RAY DIFFRACTION 4.4767 -2.5137 -0.3203 5.9325 -0.0904 4.3960 0.4161 0.0964 -0.4614 -0.5563 -0.3686 -0.3001 0.0449 0.3106 -0.0475 0.1969 -0.0642 0.0307 0.4909 0.0861 0.3709 refined -6.4470 -28.3979 -49.1183 X-RAY DIFFRACTION 4.0653 0.7697 -3.6293 6.6596 -2.8833 4.0726 -0.0775 0.0328 -0.7072 -0.0977 -0.1955 0.3402 0.2473 -0.1092 0.2730 0.3404 -0.1746 -0.1742 0.7733 0.2800 0.8177 refined -25.8273 -38.3134 -41.3953 X-RAY DIFFRACTION 6.4778 -1.1518 -1.0214 6.4271 -0.3002 2.7351 0.3056 0.6023 -0.2126 -0.3977 -0.1272 0.3680 0.0407 -0.7279 -0.1784 0.1428 -0.0707 -0.0898 0.5622 0.1176 0.3244 refined -21.9995 -31.5318 -49.7849 X-RAY DIFFRACTION 8.6426 8.4913 12.7691 19.6231 38.5527 78.8607 0.5522 -0.0769 1.8004 -0.9589 0.8623 -0.0072 -2.7991 1.8222 -1.4144 2.4767 -0.4403 0.0008 1.7016 0.1737 0.7576 refined -9.5546 -4.9207 -7.4121 X-RAY DIFFRACTION 1.7905 0.2867 0.1281 3.5783 -0.7524 7.7108 0.2132 -0.3719 0.1129 0.1874 0.2663 0.5591 -0.9790 -0.8548 -0.4795 0.2543 0.1147 0.1054 0.6722 0.0465 0.4721 refined -24.4101 -1.5012 -44.3150 X-RAY DIFFRACTION 3.6121 0.2519 0.5287 2.9543 -1.0672 5.0897 0.0352 -0.1857 0.2430 0.0265 0.5241 0.8789 -0.4783 -0.5852 -0.5593 0.2607 0.0940 -0.0265 0.5495 0.1156 0.4556 refined -25.9147 -2.3719 -53.0607 X-RAY DIFFRACTION 4.2090 -0.2761 1.0622 0.2076 -1.3702 12.4448 0.6170 -0.4792 -0.4457 0.2995 -0.0255 0.1960 -1.1419 -0.5804 -0.5915 1.5318 -0.1863 0.2000 1.1884 -0.0273 0.5339 refined -16.6419 -3.9894 -14.1440 X-RAY DIFFRACTION 7.0694 0.1124 -0.1298 1.6901 -0.0445 0.9377 -0.2971 -1.1534 -1.2041 0.3217 0.0305 -0.0337 0.3669 -0.0830 0.2666 0.3035 -0.0723 0.0891 0.8240 0.4557 0.8348 refined -21.9494 -45.6653 -30.8347 X-RAY DIFFRACTION 16.2152 -1.3884 -3.9655 11.8041 -5.9835 8.0044 -0.7687 -0.1526 -0.8560 -0.8457 -0.0159 -0.9403 1.1363 0.6004 0.7846 0.4900 0.1944 -0.1661 1.1300 0.2070 1.1679 refined 17.9516 -44.1026 -38.6351 X-RAY DIFFRACTION 58.4389 13.8205 31.0955 9.4856 5.9988 16.8427 0.0595 -1.5538 -0.5338 0.8583 0.2258 -0.1955 -0.1637 -0.9366 -0.2853 0.2375 0.1750 0.0793 1.4326 0.3114 1.2019 refined 16.9490 -39.0030 -36.9206 X-RAY DIFFRACTION 9.4101 -0.2279 -1.0016 1.4931 0.1660 0.9557 -0.3478 -0.8209 -0.8541 0.3136 0.0141 0.0106 0.4864 -0.1659 0.3337 0.3500 -0.0568 0.0652 0.8569 0.4784 0.9762 refined -20.9645 -46.1753 -30.6570 X-RAY DIFFRACTION A 1 A 58 X-RAY DIFFRACTION 1 A 59 A 89 X-RAY DIFFRACTION 2 B 1 B 28 X-RAY DIFFRACTION 3 B 29 B 43 X-RAY DIFFRACTION 4 B 44 B 58 X-RAY DIFFRACTION 5 B 59 B 87 X-RAY DIFFRACTION 6 B 88 B 93 X-RAY DIFFRACTION 7 C 1 C 43 X-RAY DIFFRACTION 8 C 44 C 90 X-RAY DIFFRACTION 9 D 1 D 43 X-RAY DIFFRACTION 10 D 44 D 89 X-RAY DIFFRACTION 11 E 1 E 5 X-RAY DIFFRACTION 12 E 6 E 25 X-RAY DIFFRACTION 13 F 1 F 15 X-RAY DIFFRACTION 14 F 16 F 25 X-RAY DIFFRACTION 15 G 1 G 19 X-RAY DIFFRACTION 16 G 20 G 25 X-RAY DIFFRACTION 17 H 1 H 6 X-RAY DIFFRACTION 18 H 7 H 25 X-RAY DIFFRACTION 19 author_defined_assembly 4 tetrameric author_defined_assembly 4 tetrameric software_defined_assembly PISA 8 octameric 20370 -130 27660 A MLI 101 I O8 MLI 1_555 C NA 102 K NA NA 1_555 C ASP 76 C OD1 ASP 76 1_555 140.0 A MLI 101 I O8 MLI 1_555 C NA 102 K NA NA 1_555 C MLI 101 J O8 MLI 1_555 83.1 C ASP 76 C OD1 ASP 76 1_555 C NA 102 K NA NA 1_555 C MLI 101 J O8 MLI 1_555 114.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 49 A N GLU 49 A O LYS 56 A O LYS 56 B N GLU 49 B N GLU 49 B O LYS 56 B O LYS 56 C N GLU 49 C N GLU 49 C O LYS 56 C O LYS 56 1 A HOH 203 L HOH 1 A HIS 90 A HIS 90 1 Y 1 A HIS 91 A HIS 91 1 Y 1 A HIS 92 A HIS 92 1 Y 1 A HIS 93 A HIS 93 1 Y 1 A HIS 94 A HIS 94 1 Y 1 B HIS 94 B HIS 94 1 Y 1 C HIS 91 C HIS 91 1 Y 1 C HIS 92 C HIS 92 1 Y 1 C HIS 93 C HIS 93 1 Y 1 C HIS 94 C HIS 94 1 Y 1 D HIS 90 D HIS 90 1 Y 1 D HIS 91 D HIS 91 1 Y 1 D HIS 92 D HIS 92 1 Y 1 D HIS 93 D HIS 93 1 Y 1 D HIS 94 D HIS 94 1 Y 1 C H OG OP2 SER DA 33 6 1.91 1 A GLN 16 44.16 29.70 1 A SER 52 54.60 84.65 1 B SER 17 -172.51 128.48 1 B PRO 54 -53.61 87.23 1 C SER 52 -169.74 106.17 1 D ARG 53 -82.21 -132.49 1 D PRO 54 1.91 65.61 268.450 108.1734 55.020 0.8500 0.0000 0.0000 0.8500 0.0000 -1.7000 0.9560 0.9510 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED 0.2029 0.1782 0.1794 3.10 48.95 1523 30320 5.0000 91.9700 0.1990 0.1710 1.000 0.500 24.6680 0.1920 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.4330 0.2730 0.8000 0.8000 1.2000 PDB entry 3M1E MAXIMUM LIKELIHOOD MASK 3.10 48.95 20 4995 15 2038 2922 0.004 0.016 5275 0.001 0.020 4131 0.994 1.660 7927 0.843 3.001 9510 5.336 5.000 357 35.280 23.586 145 17.221 15.000 557 14.370 15.000 24 0.062 0.200 841 0.005 0.020 4507 0.001 0.020 1024 1 A 1 1452 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.460 0.500 1 A 1 1452 X-RAY DIFFRACTION MEDIUM THERMAL 7.740 2.000 1 B 2 1453 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.500 0.500 1 B 2 1453 X-RAY DIFFRACTION MEDIUM THERMAL 12.580 2.000 1 E 3 795 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.430 0.500 1 E 3 795 X-RAY DIFFRACTION MEDIUM THERMAL 11.840 2.000 1 F 4 798 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.410 0.500 1 F 4 798 X-RAY DIFFRACTION MEDIUM THERMAL 8.300 2.000 0.294 0.250 3.165 68 1481 2298 20 67.406 0.256 0.215 3.252 102 1607 2185 20 78.215 0.263 0.229 3.346 114 1662 2103 20 84.451 0.254 0.228 3.449 80 1802 2052 20 91.715 0.241 0.206 3.562 94 1753 1959 20 94.283 0.239 0.196 3.687 93 1695 1884 20 94.904 0.181 0.189 3.826 70 1686 1837 20 95.591 0.250 0.181 3.982 85 1620 1762 20 96.765 0.223 0.166 4.159 78 1532 1673 20 96.234 0.197 0.141 4.361 82 1465 1588 20 97.418 0.143 0.132 4.597 75 1401 1529 20 96.534 0.161 0.149 4.875 77 1290 1417 20 96.471 0.177 0.175 5.211 64 1236 1345 20 96.654 0.209 0.190 5.628 57 1139 1241 20 96.374 0.283 0.222 6.163 49 1045 1143 20 95.713 0.206 0.182 6.888 50 929 1018 20 96.169 0.175 0.135 7.949 38 816 901 20 94.784 0.149 0.141 9.722 47 658 746 20 94.504 0.155 0.162 13.697 16 503 559 20 92.844 0.291 0.276 110.657 6 244 303 20 82.508 99.4 3.100 200.000 4IHS 30569 0.114 3.317 1 12.800 8.200 92.700 0.399 3.100 3.210 2350 3.964 1 3.000 72.500 0.322 3.210 3.340 2714 3.544 1 4.100 84.200 0.401 3.340 3.490 3021 3.705 1 5.900 93.000 0.346 3.490 3.680 3120 3.311 1 8.000 96.100 0.258 3.680 3.910 3158 3.495 1 9.500 97.200 0.217 3.910 4.210 3199 3.840 1 10.300 97.700 0.145 4.210 4.630 3223 2.846 1 10.300 97.500 0.116 4.630 5.300 3203 2.846 1 10.200 97.000 0.100 5.300 6.680 3227 2.967 1 10.000 96.500 0.054 6.680 200.000 3354 3.595 1 8.700 94.300 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Garib N. Murshudov garib@ysbl.york.ac.uk 24/04/2001 Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program refmac_5.6.0117 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of BenM_DBD/catB site 1 DNA Complex 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N A GLU 2 A GLU 2 HELX_P A GLU 15 A GLU 15 1 1 14 A SER 17 A SER 17 HELX_P A CYS 26 A CYS 26 1 2 10 A ALA 28 A ALA 28 HELX_P A GLY 44 A GLY 44 1 3 17 A THR 58 A THR 58 HELX_P A SER 87 A SER 87 1 4 30 B GLU 2 B GLU 2 HELX_P B GLN 16 B GLN 16 1 5 15 B SER 17 B SER 17 HELX_P B LEU 25 B LEU 25 1 6 9 B ALA 28 B ALA 28 HELX_P B GLY 44 B GLY 44 1 7 17 B THR 58 B THR 58 HELX_P B SER 87 B SER 87 1 8 30 C GLU 2 C GLU 2 HELX_P C GLN 16 C GLN 16 1 9 15 C SER 17 C SER 17 HELX_P C CYS 26 C CYS 26 1 10 10 C ALA 28 C ALA 28 HELX_P C GLY 44 C GLY 44 1 11 17 C THR 58 C THR 58 HELX_P C SER 87 C SER 87 1 12 30 D GLU 2 D GLU 2 HELX_P D GLN 16 D GLN 16 1 13 15 D SER 17 D SER 17 HELX_P D LEU 25 D LEU 25 1 14 9 D ALA 28 D ALA 28 HELX_P D GLY 44 D GLY 44 1 15 17 D THR 58 D THR 58 HELX_P D SER 87 D SER 87 1 16 30 metalc 2.613 A MLI 101 I O8 MLI 1_555 C NA 102 K NA NA 1_555 metalc 2.705 C ASP 76 C OD1 ASP 76 1_555 C NA 102 K NA NA 1_555 metalc 2.664 C MLI 101 J O8 MLI 1_555 C NA 102 K NA NA 1_555 hydrog WATSON-CRICK E DT 1 E N3 DT 1 1_555 F DA 25 F N1 DA 25 1_555 hydrog WATSON-CRICK E DT 1 E O4 DT 1 1_555 F DA 25 F N6 DA 25 1_555 hydrog WATSON-CRICK E DT 2 E N3 DT 2 1_555 F DA 24 F N1 DA 24 1_555 hydrog WATSON-CRICK E DT 2 E O4 DT 2 1_555 F DA 24 F N6 DA 24 1_555 hydrog WATSON-CRICK E DT 3 E N3 DT 3 1_555 F DA 23 F N1 DA 23 1_555 hydrog WATSON-CRICK E DT 3 E O4 DT 3 1_555 F DA 23 F N6 DA 23 1_555 hydrog WATSON-CRICK E DA 4 E N1 DA 4 1_555 F DT 22 F N3 DT 22 1_555 hydrog WATSON-CRICK E DA 4 E N6 DA 4 1_555 F DT 22 F O4 DT 22 1_555 hydrog WATSON-CRICK E DT 5 E N3 DT 5 1_555 F DA 21 F N1 DA 21 1_555 hydrog WATSON-CRICK E DT 5 E O4 DT 5 1_555 F DA 21 F N6 DA 21 1_555 hydrog WATSON-CRICK E DA 6 E N1 DA 6 1_555 F DT 20 F N3 DT 20 1_555 hydrog WATSON-CRICK E DA 6 E N6 DA 6 1_555 F DT 20 F O4 DT 20 1_555 hydrog WATSON-CRICK E DT 7 E N3 DT 7 1_555 F DA 19 F N1 DA 19 1_555 hydrog WATSON-CRICK E DT 7 E O4 DT 7 1_555 F DA 19 F N6 DA 19 1_555 hydrog WATSON-CRICK E DA 8 E N1 DA 8 1_555 F DT 18 F N3 DT 18 1_555 hydrog WATSON-CRICK E DA 8 E N6 DA 8 1_555 F DT 18 F O4 DT 18 1_555 hydrog WATSON-CRICK E DC 9 E N3 DC 9 1_555 F DG 17 F N1 DG 17 1_555 hydrog WATSON-CRICK E DC 9 E N4 DC 9 1_555 F DG 17 F O6 DG 17 1_555 hydrog WATSON-CRICK E DC 9 E O2 DC 9 1_555 F DG 17 F N2 DG 17 1_555 hydrog WATSON-CRICK E DC 10 E N3 DC 10 1_555 F DG 16 F N1 DG 16 1_555 hydrog WATSON-CRICK E DC 10 E N4 DC 10 1_555 F DG 16 F O6 DG 16 1_555 hydrog WATSON-CRICK E DC 10 E O2 DC 10 1_555 F DG 16 F N2 DG 16 1_555 hydrog WATSON-CRICK E DT 11 E N3 DT 11 1_555 F DA 15 F N1 DA 15 1_555 hydrog WATSON-CRICK E DT 11 E O4 DT 11 1_555 F DA 15 F N6 DA 15 1_555 hydrog WATSON-CRICK E DT 12 E N3 DT 12 1_555 F DA 14 F N1 DA 14 1_555 hydrog WATSON-CRICK E DT 12 E O4 DT 12 1_555 F DA 14 F N6 DA 14 1_555 hydrog WATSON-CRICK E DT 13 E N3 DT 13 1_555 F DA 13 F N1 DA 13 1_555 hydrog WATSON-CRICK E DT 13 E O4 DT 13 1_555 F DA 13 F N6 DA 13 1_555 hydrog WATSON-CRICK E DT 14 E N3 DT 14 1_555 F DA 12 F N1 DA 12 1_555 hydrog WATSON-CRICK E DT 14 E O4 DT 14 1_555 F DA 12 F N6 DA 12 1_555 hydrog WATSON-CRICK E DT 15 E N3 DT 15 1_555 F DA 11 F N1 DA 11 1_555 hydrog WATSON-CRICK E DT 15 E O4 DT 15 1_555 F DA 11 F N6 DA 11 1_555 hydrog WATSON-CRICK E DA 16 E N1 DA 16 1_555 F DT 10 F N3 DT 10 1_555 hydrog WATSON-CRICK E DA 16 E N6 DA 16 1_555 F DT 10 F O4 DT 10 1_555 hydrog WATSON-CRICK E DG 17 E N1 DG 17 1_555 F DC 9 F N3 DC 9 1_555 hydrog WATSON-CRICK E DG 17 E N2 DG 17 1_555 F DC 9 F O2 DC 9 1_555 hydrog WATSON-CRICK E DG 17 E O6 DG 17 1_555 F DC 9 F N4 DC 9 1_555 hydrog WATSON-CRICK E DT 18 E N3 DT 18 1_555 F DA 8 F N1 DA 8 1_555 hydrog WATSON-CRICK E DT 18 E O4 DT 18 1_555 F DA 8 F N6 DA 8 1_555 hydrog WATSON-CRICK E DA 19 E N1 DA 19 1_555 F DT 7 F N3 DT 7 1_555 hydrog WATSON-CRICK E DA 19 E N6 DA 19 1_555 F DT 7 F O4 DT 7 1_555 hydrog WATSON-CRICK E DT 20 E N3 DT 20 1_555 F DA 6 F N1 DA 6 1_555 hydrog WATSON-CRICK E DT 20 E O4 DT 20 1_555 F DA 6 F N6 DA 6 1_555 hydrog WATSON-CRICK E DG 21 E N1 DG 21 1_555 F DC 5 F N3 DC 5 1_555 hydrog WATSON-CRICK E DG 21 E N2 DG 21 1_555 F DC 5 F O2 DC 5 1_555 hydrog WATSON-CRICK E DG 21 E O6 DG 21 1_555 F DC 5 F N4 DC 5 1_555 hydrog WATSON-CRICK E DC 22 E N3 DC 22 1_555 F DG 4 F N1 DG 4 1_555 hydrog WATSON-CRICK E DC 22 E N4 DC 22 1_555 F DG 4 F O6 DG 4 1_555 hydrog WATSON-CRICK E DC 22 E O2 DC 22 1_555 F DG 4 F N2 DG 4 1_555 hydrog WATSON-CRICK E DA 23 E N1 DA 23 1_555 F DT 3 F N3 DT 3 1_555 hydrog WATSON-CRICK E DA 23 E N6 DA 23 1_555 F DT 3 F O4 DT 3 1_555 hydrog DA-DT PAIR E DA 24 E N6 DA 24 1_555 F DT 1 F O4 DT 1 1_555 hydrog WATSON-CRICK E DA 24 E N1 DA 24 1_555 F DT 2 F N3 DT 2 1_555 hydrog WATSON-CRICK E DA 24 E N6 DA 24 1_555 F DT 2 F O4 DT 2 1_555 hydrog WATSON-CRICK E DA 25 E N1 DA 25 1_555 F DT 1 F N3 DT 1 1_555 hydrog WATSON-CRICK E DA 25 E N6 DA 25 1_555 F DT 1 F O4 DT 1 1_555 hydrog WATSON-CRICK G DT 1 G N3 DT 1 1_555 H DA 25 H N1 DA 25 1_555 hydrog WATSON-CRICK G DT 1 G O4 DT 1 1_555 H DA 25 H N6 DA 25 1_555 hydrog WATSON-CRICK G DT 2 G N3 DT 2 1_555 H DA 24 H N1 DA 24 1_555 hydrog WATSON-CRICK G DT 2 G O4 DT 2 1_555 H DA 24 H N6 DA 24 1_555 hydrog WATSON-CRICK G DT 3 G N3 DT 3 1_555 H DA 23 H N1 DA 23 1_555 hydrog WATSON-CRICK G DT 3 G O4 DT 3 1_555 H DA 23 H N6 DA 23 1_555 hydrog WATSON-CRICK G DA 4 G N1 DA 4 1_555 H DT 22 H N3 DT 22 1_555 hydrog WATSON-CRICK G DA 4 G N6 DA 4 1_555 H DT 22 H O4 DT 22 1_555 hydrog WATSON-CRICK G DT 5 G N3 DT 5 1_555 H DA 21 H N1 DA 21 1_555 hydrog WATSON-CRICK G DT 5 G O4 DT 5 1_555 H DA 21 H N6 DA 21 1_555 hydrog WATSON-CRICK G DA 6 G N1 DA 6 1_555 H DT 20 H N3 DT 20 1_555 hydrog WATSON-CRICK G DA 6 G N6 DA 6 1_555 H DT 20 H O4 DT 20 1_555 hydrog WATSON-CRICK G DT 7 G N3 DT 7 1_555 H DA 19 H N1 DA 19 1_555 hydrog WATSON-CRICK G DT 7 G O4 DT 7 1_555 H DA 19 H N6 DA 19 1_555 hydrog WATSON-CRICK G DA 8 G N1 DA 8 1_555 H DT 18 H N3 DT 18 1_555 hydrog WATSON-CRICK G DA 8 G N6 DA 8 1_555 H DT 18 H O4 DT 18 1_555 hydrog WATSON-CRICK G DC 9 G N3 DC 9 1_555 H DG 17 H N1 DG 17 1_555 hydrog WATSON-CRICK G DC 9 G N4 DC 9 1_555 H DG 17 H O6 DG 17 1_555 hydrog WATSON-CRICK G DC 9 G O2 DC 9 1_555 H DG 17 H N2 DG 17 1_555 hydrog WATSON-CRICK G DC 10 G N3 DC 10 1_555 H DG 16 H N1 DG 16 1_555 hydrog WATSON-CRICK G DC 10 G N4 DC 10 1_555 H DG 16 H O6 DG 16 1_555 hydrog WATSON-CRICK G DC 10 G O2 DC 10 1_555 H DG 16 H N2 DG 16 1_555 hydrog WATSON-CRICK G DT 11 G N3 DT 11 1_555 H DA 15 H N1 DA 15 1_555 hydrog WATSON-CRICK G DT 11 G O4 DT 11 1_555 H DA 15 H N6 DA 15 1_555 hydrog WATSON-CRICK G DT 12 G N3 DT 12 1_555 H DA 14 H N1 DA 14 1_555 hydrog WATSON-CRICK G DT 12 G O4 DT 12 1_555 H DA 14 H N6 DA 14 1_555 hydrog WATSON-CRICK G DT 13 G N3 DT 13 1_555 H DA 13 H N1 DA 13 1_555 hydrog WATSON-CRICK G DT 13 G O4 DT 13 1_555 H DA 13 H N6 DA 13 1_555 hydrog WATSON-CRICK G DT 14 G N3 DT 14 1_555 H DA 12 H N1 DA 12 1_555 hydrog WATSON-CRICK G DT 14 G O4 DT 14 1_555 H DA 12 H N6 DA 12 1_555 hydrog WATSON-CRICK G DT 15 G N3 DT 15 1_555 H DA 11 H N1 DA 11 1_555 hydrog WATSON-CRICK G DT 15 G O4 DT 15 1_555 H DA 11 H N6 DA 11 1_555 hydrog WATSON-CRICK G DA 16 G N1 DA 16 1_555 H DT 10 H N3 DT 10 1_555 hydrog WATSON-CRICK G DA 16 G N6 DA 16 1_555 H DT 10 H O4 DT 10 1_555 hydrog WATSON-CRICK G DG 17 G N1 DG 17 1_555 H DC 9 H N3 DC 9 1_555 hydrog WATSON-CRICK G DG 17 G N2 DG 17 1_555 H DC 9 H O2 DC 9 1_555 hydrog WATSON-CRICK G DG 17 G O6 DG 17 1_555 H DC 9 H N4 DC 9 1_555 hydrog WATSON-CRICK G DT 18 G N3 DT 18 1_555 H DA 8 H N1 DA 8 1_555 hydrog WATSON-CRICK G DT 18 G O4 DT 18 1_555 H DA 8 H N6 DA 8 1_555 hydrog WATSON-CRICK G DA 19 G N1 DA 19 1_555 H DT 7 H N3 DT 7 1_555 hydrog WATSON-CRICK G DA 19 G N6 DA 19 1_555 H DT 7 H O4 DT 7 1_555 hydrog WATSON-CRICK G DT 20 G N3 DT 20 1_555 H DA 6 H N1 DA 6 1_555 hydrog WATSON-CRICK G DT 20 G O4 DT 20 1_555 H DA 6 H N6 DA 6 1_555 hydrog WATSON-CRICK G DG 21 G N1 DG 21 1_555 H DC 5 H N3 DC 5 1_555 hydrog WATSON-CRICK G DG 21 G N2 DG 21 1_555 H DC 5 H O2 DC 5 1_555 hydrog WATSON-CRICK G DG 21 G O6 DG 21 1_555 H DC 5 H N4 DC 5 1_555 hydrog WATSON-CRICK G DC 22 G N3 DC 22 1_555 H DG 4 H N1 DG 4 1_555 hydrog WATSON-CRICK G DC 22 G N4 DC 22 1_555 H DG 4 H O6 DG 4 1_555 hydrog WATSON-CRICK G DC 22 G O2 DC 22 1_555 H DG 4 H N2 DG 4 1_555 hydrog WATSON-CRICK G DA 23 G N1 DA 23 1_555 H DT 3 H N3 DT 3 1_555 hydrog WATSON-CRICK G DA 23 G N6 DA 23 1_555 H DT 3 H O4 DT 3 1_555 hydrog DA-DT PAIR G DA 24 G N6 DA 24 1_555 H DT 1 H O4 DT 1 1_555 hydrog WATSON-CRICK G DA 24 G N1 DA 24 1_555 H DT 2 H N3 DT 2 1_555 hydrog WATSON-CRICK G DA 24 G N6 DA 24 1_555 H DT 2 H O4 DT 2 1_555 hydrog WATSON-CRICK G DA 25 G N1 DA 25 1_555 H DT 1 H N3 DT 1 1_555 hydrog WATSON-CRICK G DA 25 G N6 DA 25 1_555 H DT 1 H O4 DT 1 1_555 Transcription/DNA wHTH, HTH, Transcriptional regulator, catB promoter, Transcription-DNA complex A GLY 51 A GLY 51 1 A SER 52 A SER 52 -18.56 A ARG 53 A ARG 53 1 A PRO 54 A PRO 54 1.18 C ARG 53 C ARG 53 1 C PRO 54 C PRO 54 -1.99 A C B D E G F H BENM_ACIAD UNP 1 1 O68014 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIAS 4IHS PDB 2 4IHS TTTATATACCTTTTTAGTATGCAAA 4IHS PDB 3 4IHS TTTGCATACTAAAAAGGTATATAAA 1 87 4IHS 1 87 O68014 A 1 1 87 1 87 4IHS 1 87 O68014 B 1 1 87 1 87 4IHS 1 87 O68014 C 1 1 87 1 87 4IHS 1 87 O68014 D 1 1 87 1 25 4IHS 1 25 4IHS E 2 1 25 1 25 4IHS 1 25 4IHS G 2 1 25 1 25 4IHS 1 25 4IHS F 3 1 25 1 25 4IHS 1 25 4IHS H 3 1 25 1 expression tag GLY 88 4IHS A O68014 UNP 88 1 expression tag HIS 89 4IHS A O68014 UNP 89 1 expression tag HIS 90 4IHS A O68014 UNP 90 1 expression tag HIS 91 4IHS A O68014 UNP 91 1 expression tag HIS 92 4IHS A O68014 UNP 92 1 expression tag HIS 93 4IHS A O68014 UNP 93 1 expression tag HIS 94 4IHS A O68014 UNP 94 2 expression tag GLY 88 4IHS B O68014 UNP 88 2 expression tag HIS 89 4IHS B O68014 UNP 89 2 expression tag HIS 90 4IHS B O68014 UNP 90 2 expression tag HIS 91 4IHS B O68014 UNP 91 2 expression tag HIS 92 4IHS B O68014 UNP 92 2 expression tag HIS 93 4IHS B O68014 UNP 93 2 expression tag HIS 94 4IHS B O68014 UNP 94 3 expression tag GLY 88 4IHS C O68014 UNP 88 3 expression tag HIS 89 4IHS C O68014 UNP 89 3 expression tag HIS 90 4IHS C O68014 UNP 90 3 expression tag HIS 91 4IHS C O68014 UNP 91 3 expression tag HIS 92 4IHS C O68014 UNP 92 3 expression tag HIS 93 4IHS C O68014 UNP 93 3 expression tag HIS 94 4IHS C O68014 UNP 94 4 expression tag GLY 88 4IHS D O68014 UNP 88 4 expression tag HIS 89 4IHS D O68014 UNP 89 4 expression tag HIS 90 4IHS D O68014 UNP 90 4 expression tag HIS 91 4IHS D O68014 UNP 91 4 expression tag HIS 92 4IHS D O68014 UNP 92 4 expression tag HIS 93 4IHS D O68014 UNP 93 4 expression tag HIS 94 4IHS D O68014 UNP 94 2 2 2 anti-parallel anti-parallel anti-parallel A LEU 48 A LEU 48 A GLU 49 A GLU 49 A LYS 56 A LYS 56 A THR 57 A THR 57 B LEU 48 B LEU 48 B GLU 49 B GLU 49 B LYS 56 B LYS 56 B THR 57 B THR 57 C LEU 48 C LEU 48 C GLU 49 C GLU 49 C LYS 56 C LYS 56 C THR 57 C THR 57 BINDING SITE FOR RESIDUE MLI A 101 A MLI 101 Software 9 BINDING SITE FOR RESIDUE MLI C 101 C MLI 101 Software 9 BINDING SITE FOR RESIDUE NA C 102 C NA 102 Software 3 A ASP 76 A ASP 76 9 1_555 A VAL 79 A VAL 79 9 1_555 A SER 80 A SER 80 9 1_555 A HOH 205 L HOH 9 1_555 C ARG 7 C ARG 7 9 1_555 C MLI 101 J MLI 9 1_555 C NA 102 K NA 9 1_555 D MET 1 D MET 1 9 1_555 D GLU 42 D GLU 42 9 1_555 A ARG 7 A ARG 7 9 1_555 A MLI 101 I MLI 9 1_555 A HOH 205 L HOH 9 1_555 B MET 1 B MET 1 9 1_555 C ASP 76 C ASP 76 9 1_555 C SER 80 C SER 80 9 1_555 C LYS 83 C LYS 83 9 1_555 C NA 102 K NA 9 1_555 C HOH 203 N HOH 9 1_555 A MLI 101 I MLI 3 1_555 C ASP 76 C ASP 76 3 1_555 C MLI 101 J MLI 3 1_555 94 P 42 21 2