0.006390
0.000000
0.000000
0.000000
0.006390
0.000000
0.000000
0.000000
0.007066
0.000000
0.000000
0.000000
Alanazi, A.
Momany, C.
Neidle, E.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.000
90.000
90.000
156.493
156.493
141.525
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H2 O4 -2
102.046
MALONATE ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
O
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
NA
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
R
C
N
462
N
O
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
N
503
N
C
N
504
N
C
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
doub
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
doub
N
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
1995
2007
10.1107/S0907444913017320
24100318
The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators.
2013
UK
MOL.MICROBIOL.
MOMIEE
2007
0950-382X
72(4)
881
894
19400783
Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1.
2009
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
367(3)
616
629
17291527
Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator
2007
DK
Acta Crystallogr.,Sect.F
1744-3091
63(Pt 5)
361
368
17565172
Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family.r
2007
10.2210/pdb4ihs/pdb
pdb_00004ihs
100
1
CCD
2008-07-23
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.99999
1.0
22-BM
APS
0.99999
SYNCHROTRON
APS BEAMLINE 22-BM
10937.559
HTH-type transcriptional regulator BenM
UNP residues 1-87
4
man
polymer
7636.969
catB site 1 DNA
2
syn
polymer
7713.048
catB site 1 DNA - complement
2
syn
polymer
102.046
MALONATE ION
2
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
20
nat
water
Ben and cat operon transcriptional regulator, Transcriptional Regulator BenM DNA Binding Domain
no
no
MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS
MTKRIASGHHHHHH
MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS
MTKRIASGHHHHHH
A,B,C,D
polypeptide(L)
no
no
(DT)(DT)(DT)(DA)(DT)(DA)(DT)(DA)(DC)(DC)(DT)(DT)(DT)(DT)(DT)(DA)(DG)(DT)(DA)(DT)
(DG)(DC)(DA)(DA)(DA)
TTTATATACCTTTTTAGTATGCAAA
E,G
polydeoxyribonucleotide
no
no
(DT)(DT)(DT)(DG)(DC)(DA)(DT)(DA)(DC)(DT)(DA)(DA)(DA)(DA)(DA)(DG)(DG)(DT)(DA)(DT)
(DA)(DT)(DA)(DA)(DA)
TTTGCATACTAAAAAGGTATATAAA
F,H
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ADP1
sample
ACIAD1435, benM, benR
62977
Acinetobacter sp.
469008
Escherichia coli
BL21(DE3)RIL
plasmid
pET21B
1
5.82
78.86
MICROBATCH UNDER OIL
6
Equal volumes of precipitant, protein solution and DNA. Precipitant: sodium malonate Crystal Screen C4- 2.4 M sodium malonate pH 6.0. Protein: 20 mM Tris base (pH 8.0), 0.5 M NaCl, 10% glycerol, 150 mM imidazole, 10 mM BME, MICROBATCH UNDER OIL, temperature 288K
288
-13.834
1
20
E
1
F
25
3.769
E_DT1:DA25_F
1
-30.442
-0.511
0.519
-0.031
-0.780
1
20
E
2
F
24
1.846
E_DT2:DA24_F
2
-14.460
0.064
0.017
-0.139
3.218
1
20
E
3
F
23
4.318
E_DT3:DA23_F
3
-3.986
-0.216
-0.570
-0.037
-1.315
1
20
E
4
F
22
2.523
E_DA4:DT22_F
4
-6.990
-0.272
0.108
0.020
-2.215
1
20
E
5
F
21
-4.246
E_DT5:DA21_F
5
-10.880
0.100
0.476
-0.084
-4.063
1
20
E
6
F
20
5.337
E_DA6:DT20_F
6
1.277
-0.567
0.803
-0.045
-3.720
1
20
E
7
F
19
-0.576
E_DT7:DA19_F
7
0.866
-0.022
0.674
-0.156
-0.473
1
20
E
8
F
18
-3.091
E_DA8:DT18_F
8
-7.587
0.027
0.056
-0.058
6.942
1
19
E
9
F
17
2.184
E_DC9:DG17_F
9
-4.977
0.515
-0.330
-0.226
1.272
1
19
E
10
F
16
0.998
E_DC10:DG16_F
10
-6.303
0.158
-0.311
-0.149
-11.375
1
20
E
11
F
15
-2.261
E_DT11:DA15_F
11
-12.378
-0.028
0.360
-0.228
-11.191
1
20
E
12
F
14
-2.936
E_DT12:DA14_F
12
-14.143
-0.163
0.421
-0.208
-3.745
1
20
E
13
F
13
0.784
E_DT13:DA13_F
13
-14.810
0.031
0.284
-0.160
-2.782
1
20
E
14
F
12
1.499
E_DT14:DA12_F
14
-14.686
-0.064
0.189
-0.267
5.965
1
20
E
15
F
11
0.774
E_DT15:DA11_F
15
-8.198
0.166
-0.300
-0.280
-6.207
1
20
E
16
F
10
0.051
E_DA16:DT10_F
16
-3.563
-0.214
0.096
-0.140
-9.625
1
19
E
17
F
9
2.814
E_DG17:DC9_F
17
-8.919
-0.347
-0.184
-0.145
-4.206
1
20
E
18
F
8
-1.595
E_DT18:DA8_F
18
-3.384
-0.189
0.005
-0.178
-3.199
1
20
E
19
F
7
-3.232
E_DA19:DT7_F
19
-6.644
0.232
-0.158
-0.025
7.799
1
20
E
20
F
6
4.050
E_DT20:DA6_F
20
0.125
0.174
0.100
-0.197
-9.535
1
19
E
21
F
5
0.189
E_DG21:DC5_F
21
-4.642
0.058
-0.123
0.006
2.573
1
19
E
22
F
4
7.559
E_DC22:DG4_F
22
-5.800
0.152
-0.148
0.004
0.449
1
20
E
23
F
3
8.526
E_DA23:DT3_F
23
-12.047
0.016
0.005
-0.052
3.327
1
20
E
24
F
2
5.853
E_DA24:DT2_F
24
-20.167
-0.075
-0.153
-0.076
25.158
1
20
E
25
F
1
1.445
E_DA25:DT1_F
25
-20.606
0.446
0.662
0.191
-12.302
1
20
G
1
H
25
7.176
G_DT1:DA25_H
26
-20.722
0.214
0.422
0.033
-8.033
1
20
G
2
H
24
6.189
G_DT2:DA24_H
27
-10.993
0.283
0.335
-0.076
0.368
1
20
G
3
H
23
3.819
G_DT3:DA23_H
28
-10.597
-0.196
-0.137
-0.177
-0.445
1
20
G
4
H
22
1.442
G_DA4:DT22_H
29
-4.534
-0.407
0.112
-0.208
4.355
1
20
G
5
H
21
-2.268
G_DT5:DA21_H
30
-10.756
0.161
-0.079
-0.159
-6.062
1
20
G
6
H
20
2.253
G_DA6:DT20_H
31
-3.589
-0.252
0.247
-0.118
-1.346
1
20
G
7
H
19
0.121
G_DT7:DA19_H
32
0.440
-0.003
0.284
-0.181
-1.438
1
20
G
8
H
18
-2.337
G_DA8:DT18_H
33
-1.273
0.240
0.065
-0.150
1.411
1
19
G
9
H
17
3.547
G_DC9:DG17_H
34
3.962
0.649
0.272
-0.194
-0.808
1
19
G
10
H
16
8.773
G_DC10:DG16_H
35
-9.646
0.377
0.221
-0.100
-5.109
1
20
G
11
H
15
1.553
G_DT11:DA15_H
36
-4.196
0.033
0.291
-0.323
-5.227
1
20
G
12
H
14
-3.118
G_DT12:DA14_H
37
-8.735
-0.203
0.418
-0.251
-3.909
1
20
G
13
H
13
-3.773
G_DT13:DA13_H
38
-11.931
-0.032
0.359
-0.241
0.587
1
20
G
14
H
12
0.484
G_DT14:DA12_H
39
-9.454
-0.004
0.219
-0.180
-0.274
1
20
G
15
H
11
2.645
G_DT15:DA11_H
40
-7.121
0.204
0.091
-0.216
0.447
1
20
G
16
H
10
3.731
G_DA16:DT10_H
41
-1.860
0.117
0.238
-0.133
-1.215
1
19
G
17
H
9
2.851
G_DG17:DC9_H
42
-4.903
-0.340
0.046
-0.182
-3.860
1
20
G
18
H
8
0.251
G_DT18:DA8_H
43
-3.717
-0.297
-0.100
-0.100
-3.225
1
20
G
19
H
7
-1.337
G_DA19:DT7_H
44
2.960
0.238
-0.126
-0.150
9.797
1
20
G
20
H
6
4.806
G_DT20:DA6_H
45
5.499
0.283
-0.371
-0.217
-8.917
1
19
G
21
H
5
2.729
G_DG21:DC5_H
46
-1.809
-0.302
-0.502
0.044
13.450
1
19
G
22
H
4
5.911
G_DC22:DG4_H
47
-1.117
-0.042
-0.427
0.245
5.521
1
20
G
23
H
3
0.541
G_DA23:DT3_H
48
-9.879
-0.264
-0.002
-0.166
3.015
1
20
G
24
H
2
3.820
G_DA24:DT2_H
49
-16.834
0.038
0.124
0.039
16.203
1
20
G
25
H
1
0.392
G_DA25:DT1_H
50
-21.172
0.072
0.726
-0.105
2.847
41.831
E
E
1
2
4.644
F
F
25
24
2.882
3.311
-0.001
-0.298
EE_DT1DT2:DA24DA25_FF
1
2.464
-3.456
41.636
-0.722
0.228
3.206
34.878
E
E
2
3
-5.993
F
F
24
23
3.116
-3.555
0.829
0.013
EE_DT2DT3:DA23DA24_FF
2
8.061
-13.587
33.780
0.552
-0.182
3.410
36.200
E
E
3
4
5.897
F
F
23
22
3.415
3.657
0.339
0.286
EE_DT3DA4:DT22DA23_FF
3
-1.522
2.455
35.990
-0.078
-0.769
3.320
36.716
E
E
4
5
3.391
F
F
22
21
3.327
2.134
-0.693
-0.642
EE_DA4DT5:DA21DT22_FF
4
-2.148
3.414
36.596
-1.316
0.801
3.079
40.579
E
E
5
6
-13.851
F
F
21
20
3.156
-9.512
0.493
-0.257
EE_DT5DA6:DT20DA21_FF
5
-3.641
5.302
39.333
0.657
-1.104
3.399
32.790
E
E
6
7
-2.111
F
F
20
19
3.366
-1.191
-0.901
-1.104
EE_DA6DT7:DA19DT20_FF
6
0.156
-0.277
32.768
-1.744
1.624
3.032
35.022
E
E
7
8
-2.253
F
F
19
18
3.062
-1.352
-0.188
-0.613
EE_DT7DA8:DT18DA19_FF
7
4.742
-7.904
34.684
-0.828
0.981
3.095
34.679
E
E
8
9
6.706
F
F
18
17
3.114
3.986
0.839
-0.399
EE_DA8DC9:DG17DT18_FF
8
2.154
-3.624
34.391
-1.253
-1.093
3.348
34.262
E
E
9
10
9.540
F
F
17
16
3.488
5.593
0.405
-0.713
EE_DC9DC10:DG16DG17_FF
9
2.039
-3.478
33.757
-2.136
-0.350
3.718
35.483
E
E
10
11
0.141
F
F
16
15
3.700
0.086
-0.453
-0.836
EE_DC10DT11:DA15DG16_FF
10
-2.032
3.335
35.427
-1.386
0.406
3.229
38.021
E
E
11
12
-10.521
F
F
15
14
3.201
-6.820
-0.051
-0.444
EE_DT11DT12:DA14DA15_FF
11
0.139
-0.214
37.426
0.178
0.096
3.087
35.990
E
E
12
13
-11.249
F
F
14
13
3.040
-6.910
-0.118
-0.538
EE_DT12DT13:DA13DA14_FF
12
0.070
-0.113
35.342
0.058
0.200
3.192
35.382
E
E
13
14
-10.811
F
F
13
12
3.161
-6.535
0.061
-0.458
EE_DT13DT14:DA12DA13_FF
13
0.677
-1.119
34.786
0.189
-0.003
3.094
36.849
E
E
14
15
-8.946
F
F
12
11
3.089
-5.632
0.033
-0.267
EE_DT14DT15:DA11DA12_FF
14
1.645
-2.613
36.395
0.304
0.160
3.555
36.810
E
E
15
16
-0.579
F
F
11
10
3.567
-0.365
-0.038
-0.414
EE_DT15DA16:DT10DA11_FF
15
-4.026
6.388
36.595
-0.601
-0.537
3.424
36.690
E
E
16
17
2.246
F
F
10
9
3.451
1.413
0.022
-0.675
EE_DA16DG17:DC9DT10_FF
16
0.275
-0.436
36.662
-1.276
0.005
3.080
32.406
E
E
17
18
4.231
F
F
9
8
3.119
2.359
-0.595
-0.691
EE_DG17DT18:DA8DC9_FF
17
-1.108
1.987
32.304
-1.633
0.882
3.135
37.529
E
E
18
19
7.991
F
F
8
7
3.202
5.125
0.074
-0.300
EE_DT18DA19:DT7DA8_FF
18
1.479
-2.306
37.162
-1.118
0.073
3.002
28.158
E
E
19
20
-2.215
F
F
7
6
3.037
-1.077
1.067
-0.823
EE_DA19DT20:DA6DT7_FF
19
-1.579
3.249
28.095
-1.459
-2.534
3.712
40.648
E
E
20
21
-2.964
F
F
6
5
3.730
-2.057
-0.384
-0.323
EE_DT20DG21:DC5DA6_FF
20
2.524
-3.636
40.523
-0.205
0.872
3.158
35.513
E
E
21
22
-1.303
F
F
5
4
3.090
-0.794
1.012
0.107
EE_DG21DC22:DG4DC5_FF
21
2.960
-4.859
35.385
0.286
-1.245
3.429
35.235
E
E
22
23
9.387
F
F
4
3
3.375
5.659
-0.214
0.590
EE_DC22DA23:DT3DG4_FF
22
-0.583
0.967
34.788
0.095
0.262
3.114
37.536
E
E
23
24
6.795
F
F
3
2
3.079
4.362
-0.753
0.210
EE_DA23DA24:DT2DT3_FF
23
-1.801
2.806
37.249
-0.215
0.947
2.637
36.272
E
E
24
25
7.931
F
F
2
1
2.722
4.892
0.058
0.012
EE_DA24DA25:DT1DT2_FF
24
-7.285
11.812
35.229
-0.551
-0.942
3.128
40.452
G
G
1
2
2.697
H
H
25
24
3.154
1.862
-0.007
-0.239
GG_DT1DT2:DA24DA25_HH
25
3.680
-5.330
40.250
-0.547
0.408
3.011
35.160
G
G
2
3
-8.855
H
H
24
23
3.081
-5.309
0.249
0.262
GG_DT2DT3:DA23DA24_HH
26
5.538
-9.237
34.339
1.180
0.367
3.359
37.352
G
G
3
4
3.002
H
H
23
22
3.334
1.921
0.138
0.754
GG_DT3DA4:DT22DA23_HH
27
-1.485
2.320
37.276
0.918
-0.416
3.124
37.137
G
G
4
5
-1.114
H
H
22
21
3.147
-0.709
-0.557
-0.521
GG_DA4DT5:DA21DT22_HH
28
1.915
-3.008
37.082
-0.728
1.120
3.458
41.106
G
G
5
6
-6.291
H
H
21
20
3.496
-4.408
0.378
-0.002
GG_DT5DA6:DT20DA21_HH
29
-1.855
2.647
40.839
0.507
-0.753
3.204
31.832
G
G
6
7
-0.189
H
H
20
19
3.172
-0.103
-0.686
-1.065
GG_DA6DT7:DA19DT20_HH
30
-1.517
2.767
31.796
-1.924
0.980
3.147
36.601
G
G
7
8
2.182
H
H
19
18
3.179
1.369
-0.273
-0.471
GG_DT7DA8:DT18DA19_HH
31
1.530
-2.437
36.546
-0.932
0.638
3.155
33.928
G
G
8
9
6.409
H
H
18
17
3.318
3.728
0.815
-0.566
GG_DA8DC9:DG17DT18_HH
32
-3.050
5.244
33.594
-1.565
-1.883
3.177
33.260
G
G
9
10
5.658
H
H
17
16
3.238
3.230
0.569
-0.867
GG_DC9DC10:DG16DG17_HH
33
2.848
-4.988
32.988
-2.047
-0.525
3.420
34.108
G
G
10
11
-5.193
H
H
16
15
3.374
-3.042
-0.851
-0.805
GG_DC10DT11:DA15DG16_HH
34
0.440
-0.752
33.974
-0.871
1.523
3.311
38.972
G
G
11
12
-9.728
H
H
15
14
3.259
-6.462
-0.071
-0.587
GG_DT11DT12:DA14DA15_HH
35
-0.313
0.471
38.452
-0.090
0.069
3.203
36.798
G
G
12
13
-12.621
H
H
14
13
3.170
-7.908
-0.199
-0.527
GG_DT12DT13:DA13DA14_HH
36
1.026
-1.638
35.953
0.226
0.453
3.156
35.347
G
G
13
14
-11.981
H
H
13
12
3.092
-7.225
0.266
-0.598
GG_DT13DT14:DA12DA13_HH
37
1.257
-2.085
34.601
0.045
-0.260
3.282
37.172
G
G
14
15
-6.210
H
H
12
11
3.252
-3.950
0.260
-0.383
GG_DT14DT15:DA11DA12_HH
38
1.745
-2.743
36.929
-0.074
-0.174
3.213
37.816
G
G
15
16
-5.751
H
H
11
10
3.200
-3.720
-0.146
-0.263
GG_DT15DA16:DT10DA11_HH
39
-2.020
3.123
37.586
0.064
-0.031
3.398
35.564
G
G
16
17
-1.410
H
H
10
9
3.383
-0.861
0.032
-0.693
GG_DA16DG17:DC9DT10_HH
40
-0.156
0.256
35.554
-1.005
-0.076
3.257
32.524
G
G
17
18
2.575
H
H
9
8
3.337
1.440
-0.472
-0.765
GG_DG17DT18:DA8DC9_HH
41
2.440
-4.362
32.404
-1.620
1.274
3.163
38.097
G
G
18
19
8.815
H
H
8
7
3.251
5.733
0.272
-0.337
GG_DT18DA19:DT7DA8_HH
42
-0.694
1.068
37.673
-1.232
-0.504
3.148
28.846
G
G
19
20
0.417
H
H
7
6
3.070
0.208
1.036
-0.718
GG_DA19DT20:DA6DT7_HH
43
2.712
-5.453
28.720
-1.485
-1.505
3.564
38.304
G
G
20
21
6.734
H
H
6
5
3.677
4.405
-0.428
-0.410
GG_DT20DG21:DC5DA6_HH
44
3.078
-4.705
37.940
-1.238
1.082
2.805
34.460
G
G
21
22
3.206
H
H
5
4
2.797
1.898
0.640
0.214
GG_DG21DC22:DG4DC5_HH
45
0.069
-0.117
34.409
0.108
-1.071
3.537
35.223
G
G
22
23
10.032
H
H
4
3
3.462
6.034
-0.763
0.408
GG_DC22DA23:DT3DG4_HH
46
-3.366
5.597
34.560
-0.294
0.721
3.281
39.323
G
G
23
24
-0.064
H
H
3
2
3.269
-0.043
-0.337
-0.136
GG_DA23DA24:DT2DT3_HH
47
-1.702
2.530
39.288
-0.197
0.299
2.817
36.281
G
G
24
25
-3.383
H
H
2
1
2.842
-2.099
0.089
-0.306
GG_DA24DA25:DT1DT2_HH
48
-5.061
8.156
35.879
-0.236
-0.759
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-07-10
1
1
2013-10-02
1
2
2014-01-15
1
3
2017-11-15
1
4
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure of BenM DNA binding domain
RCSB
Y
RCSB
2012-12-19
REL
REL
MLI
MALONATE ION
NA
SODIUM ION
HOH
water
synthetic DNA purchased from IDT
sample
synthetic DNA purchased from IDT
sample
3M1E
PDB entry 3M1E
PDB
experimental model
MLI
1
4
MLI
MLI
101
A
MLI
2
4
MLI
MLI
101
C
NA
3
5
NA
NA
102
C
HOH
1
6
HOH
HOH
201
A
HOH
7
6
HOH
HOH
202
A
HOH
8
6
HOH
HOH
203
A
HOH
18
6
HOH
HOH
204
A
HOH
20
6
HOH
HOH
205
A
HOH
21
6
HOH
HOH
206
A
HOH
9
6
HOH
HOH
101
B
HOH
2
6
HOH
HOH
102
B
HOH
15
6
HOH
HOH
103
B
HOH
11
6
HOH
HOH
201
C
HOH
13
6
HOH
HOH
202
C
HOH
16
6
HOH
HOH
203
C
HOH
3
6
HOH
HOH
101
D
HOH
4
6
HOH
HOH
102
D
HOH
5
6
HOH
HOH
103
D
HOH
10
6
HOH
HOH
104
D
HOH
12
6
HOH
HOH
105
D
HOH
17
6
HOH
HOH
101
E
HOH
19
6
HOH
HOH
101
F
HOH
6
6
HOH
HOH
101
H
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
LEU
3
n
3
LEU
3
A
ARG
4
n
4
ARG
4
A
HIS
5
n
5
HIS
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
TYR
8
n
8
TYR
8
A
PHE
9
n
9
PHE
9
A
VAL
10
n
10
VAL
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
GLU
14
n
14
GLU
14
A
GLU
15
n
15
GLU
15
A
GLN
16
n
16
GLN
16
A
SER
17
n
17
SER
17
A
PHE
18
n
18
PHE
18
A
THR
19
n
19
THR
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
ALA
22
n
22
ALA
22
A
ASP
23
n
23
ASP
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
CYS
26
n
26
CYS
26
A
ILE
27
n
27
ILE
27
A
ALA
28
n
28
ALA
28
A
GLN
29
n
29
GLN
29
A
PRO
30
n
30
PRO
30
A
PRO
31
n
31
PRO
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
ARG
34
n
34
ARG
34
A
GLN
35
n
35
GLN
35
A
ILE
36
n
36
ILE
36
A
GLN
37
n
37
GLN
37
A
ASN
38
n
38
ASN
38
A
LEU
39
n
39
LEU
39
A
GLU
40
n
40
GLU
40
A
GLU
41
n
41
GLU
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
GLY
44
n
44
GLY
44
A
ILE
45
n
45
ILE
45
A
GLN
46
n
46
GLN
46
A
LEU
47
n
47
LEU
47
A
LEU
48
n
48
LEU
48
A
GLU
49
n
49
GLU
49
A
ARG
50
n
50
ARG
50
A
GLY
51
n
51
GLY
51
A
SER
52
n
52
SER
52
A
ARG
53
n
53
ARG
53
A
PRO
54
n
54
PRO
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
THR
57
n
57
THR
57
A
THR
58
n
58
THR
58
A
PRO
59
n
59
PRO
59
A
GLU
60
n
60
GLU
60
A
GLY
61
n
61
GLY
61
A
HIS
62
n
62
HIS
62
A
PHE
63
n
63
PHE
63
A
PHE
64
n
64
PHE
64
A
TYR
65
n
65
TYR
65
A
GLN
66
n
66
GLN
66
A
TYR
67
n
67
TYR
67
A
ALA
68
n
68
ALA
68
A
ILE
69
n
69
ILE
69
A
LYS
70
n
70
LYS
70
A
LEU
71
n
71
LEU
71
A
LEU
72
n
72
LEU
72
A
SER
73
n
73
SER
73
A
ASN
74
n
74
ASN
74
A
VAL
75
n
75
VAL
75
A
ASP
76
n
76
ASP
76
A
GLN
77
n
77
GLN
77
A
MET
78
n
78
MET
78
A
VAL
79
n
79
VAL
79
A
SER
80
n
80
SER
80
A
MET
81
n
81
MET
81
A
THR
82
n
82
THR
82
A
LYS
83
n
83
LYS
83
A
ARG
84
n
84
ARG
84
A
ILE
85
n
85
ILE
85
A
ALA
86
n
86
ALA
86
A
SER
87
n
87
SER
87
A
GLY
88
n
88
GLY
88
A
HIS
89
n
89
HIS
89
A
n
90
90
A
n
91
91
A
n
92
92
A
n
93
93
A
n
94
94
A
MET
1
n
1
MET
1
B
GLU
2
n
2
GLU
2
B
LEU
3
n
3
LEU
3
B
ARG
4
n
4
ARG
4
B
HIS
5
n
5
HIS
5
B
LEU
6
n
6
LEU
6
B
ARG
7
n
7
ARG
7
B
TYR
8
n
8
TYR
8
B
PHE
9
n
9
PHE
9
B
VAL
10
n
10
VAL
10
B
ALA
11
n
11
ALA
11
B
VAL
12
n
12
VAL
12
B
VAL
13
n
13
VAL
13
B
GLU
14
n
14
GLU
14
B
GLU
15
n
15
GLU
15
B
GLN
16
n
16
GLN
16
B
SER
17
n
17
SER
17
B
PHE
18
n
18
PHE
18
B
THR
19
n
19
THR
19
B
LYS
20
n
20
LYS
20
B
ALA
21
n
21
ALA
21
B
ALA
22
n
22
ALA
22
B
ASP
23
n
23
ASP
23
B
LYS
24
n
24
LYS
24
B
LEU
25
n
25
LEU
25
B
CYS
26
n
26
CYS
26
B
ILE
27
n
27
ILE
27
B
ALA
28
n
28
ALA
28
B
GLN
29
n
29
GLN
29
B
PRO
30
n
30
PRO
30
B
PRO
31
n
31
PRO
31
B
LEU
32
n
32
LEU
32
B
SER
33
n
33
SER
33
B
ARG
34
n
34
ARG
34
B
GLN
35
n
35
GLN
35
B
ILE
36
n
36
ILE
36
B
GLN
37
n
37
GLN
37
B
ASN
38
n
38
ASN
38
B
LEU
39
n
39
LEU
39
B
GLU
40
n
40
GLU
40
B
GLU
41
n
41
GLU
41
B
GLU
42
n
42
GLU
42
B
LEU
43
n
43
LEU
43
B
GLY
44
n
44
GLY
44
B
ILE
45
n
45
ILE
45
B
GLN
46
n
46
GLN
46
B
LEU
47
n
47
LEU
47
B
LEU
48
n
48
LEU
48
B
GLU
49
n
49
GLU
49
B
ARG
50
n
50
ARG
50
B
GLY
51
n
51
GLY
51
B
SER
52
n
52
SER
52
B
ARG
53
n
53
ARG
53
B
PRO
54
n
54
PRO
54
B
VAL
55
n
55
VAL
55
B
LYS
56
n
56
LYS
56
B
THR
57
n
57
THR
57
B
THR
58
n
58
THR
58
B
PRO
59
n
59
PRO
59
B
GLU
60
n
60
GLU
60
B
GLY
61
n
61
GLY
61
B
HIS
62
n
62
HIS
62
B
PHE
63
n
63
PHE
63
B
PHE
64
n
64
PHE
64
B
TYR
65
n
65
TYR
65
B
GLN
66
n
66
GLN
66
B
TYR
67
n
67
TYR
67
B
ALA
68
n
68
ALA
68
B
ILE
69
n
69
ILE
69
B
LYS
70
n
70
LYS
70
B
LEU
71
n
71
LEU
71
B
LEU
72
n
72
LEU
72
B
SER
73
n
73
SER
73
B
ASN
74
n
74
ASN
74
B
VAL
75
n
75
VAL
75
B
ASP
76
n
76
ASP
76
B
GLN
77
n
77
GLN
77
B
MET
78
n
78
MET
78
B
VAL
79
n
79
VAL
79
B
SER
80
n
80
SER
80
B
MET
81
n
81
MET
81
B
THR
82
n
82
THR
82
B
LYS
83
n
83
LYS
83
B
ARG
84
n
84
ARG
84
B
ILE
85
n
85
ILE
85
B
ALA
86
n
86
ALA
86
B
SER
87
n
87
SER
87
B
GLY
88
n
88
GLY
88
B
HIS
89
n
89
HIS
89
B
HIS
90
n
90
HIS
90
B
HIS
91
n
91
HIS
91
B
HIS
92
n
92
HIS
92
B
HIS
93
n
93
HIS
93
B
n
94
94
B
MET
1
n
1
MET
1
C
GLU
2
n
2
GLU
2
C
LEU
3
n
3
LEU
3
C
ARG
4
n
4
ARG
4
C
HIS
5
n
5
HIS
5
C
LEU
6
n
6
LEU
6
C
ARG
7
n
7
ARG
7
C
TYR
8
n
8
TYR
8
C
PHE
9
n
9
PHE
9
C
VAL
10
n
10
VAL
10
C
ALA
11
n
11
ALA
11
C
VAL
12
n
12
VAL
12
C
VAL
13
n
13
VAL
13
C
GLU
14
n
14
GLU
14
C
GLU
15
n
15
GLU
15
C
GLN
16
n
16
GLN
16
C
SER
17
n
17
SER
17
C
PHE
18
n
18
PHE
18
C
THR
19
n
19
THR
19
C
LYS
20
n
20
LYS
20
C
ALA
21
n
21
ALA
21
C
ALA
22
n
22
ALA
22
C
ASP
23
n
23
ASP
23
C
LYS
24
n
24
LYS
24
C
LEU
25
n
25
LEU
25
C
CYS
26
n
26
CYS
26
C
ILE
27
n
27
ILE
27
C
ALA
28
n
28
ALA
28
C
GLN
29
n
29
GLN
29
C
PRO
30
n
30
PRO
30
C
PRO
31
n
31
PRO
31
C
LEU
32
n
32
LEU
32
C
SER
33
n
33
SER
33
C
ARG
34
n
34
ARG
34
C
GLN
35
n
35
GLN
35
C
ILE
36
n
36
ILE
36
C
GLN
37
n
37
GLN
37
C
ASN
38
n
38
ASN
38
C
LEU
39
n
39
LEU
39
C
GLU
40
n
40
GLU
40
C
GLU
41
n
41
GLU
41
C
GLU
42
n
42
GLU
42
C
LEU
43
n
43
LEU
43
C
GLY
44
n
44
GLY
44
C
ILE
45
n
45
ILE
45
C
GLN
46
n
46
GLN
46
C
LEU
47
n
47
LEU
47
C
LEU
48
n
48
LEU
48
C
GLU
49
n
49
GLU
49
C
ARG
50
n
50
ARG
50
C
GLY
51
n
51
GLY
51
C
SER
52
n
52
SER
52
C
ARG
53
n
53
ARG
53
C
PRO
54
n
54
PRO
54
C
VAL
55
n
55
VAL
55
C
LYS
56
n
56
LYS
56
C
THR
57
n
57
THR
57
C
THR
58
n
58
THR
58
C
PRO
59
n
59
PRO
59
C
GLU
60
n
60
GLU
60
C
GLY
61
n
61
GLY
61
C
HIS
62
n
62
HIS
62
C
PHE
63
n
63
PHE
63
C
PHE
64
n
64
PHE
64
C
TYR
65
n
65
TYR
65
C
GLN
66
n
66
GLN
66
C
TYR
67
n
67
TYR
67
C
ALA
68
n
68
ALA
68
C
ILE
69
n
69
ILE
69
C
LYS
70
n
70
LYS
70
C
LEU
71
n
71
LEU
71
C
LEU
72
n
72
LEU
72
C
SER
73
n
73
SER
73
C
ASN
74
n
74
ASN
74
C
VAL
75
n
75
VAL
75
C
ASP
76
n
76
ASP
76
C
GLN
77
n
77
GLN
77
C
MET
78
n
78
MET
78
C
VAL
79
n
79
VAL
79
C
SER
80
n
80
SER
80
C
MET
81
n
81
MET
81
C
THR
82
n
82
THR
82
C
LYS
83
n
83
LYS
83
C
ARG
84
n
84
ARG
84
C
ILE
85
n
85
ILE
85
C
ALA
86
n
86
ALA
86
C
SER
87
n
87
SER
87
C
GLY
88
n
88
GLY
88
C
HIS
89
n
89
HIS
89
C
HIS
90
n
90
HIS
90
C
n
91
91
C
n
92
92
C
n
93
93
C
n
94
94
C
MET
1
n
1
MET
1
D
GLU
2
n
2
GLU
2
D
LEU
3
n
3
LEU
3
D
ARG
4
n
4
ARG
4
D
HIS
5
n
5
HIS
5
D
LEU
6
n
6
LEU
6
D
ARG
7
n
7
ARG
7
D
TYR
8
n
8
TYR
8
D
PHE
9
n
9
PHE
9
D
VAL
10
n
10
VAL
10
D
ALA
11
n
11
ALA
11
D
VAL
12
n
12
VAL
12
D
VAL
13
n
13
VAL
13
D
GLU
14
n
14
GLU
14
D
GLU
15
n
15
GLU
15
D
GLN
16
n
16
GLN
16
D
SER
17
n
17
SER
17
D
PHE
18
n
18
PHE
18
D
THR
19
n
19
THR
19
D
LYS
20
n
20
LYS
20
D
ALA
21
n
21
ALA
21
D
ALA
22
n
22
ALA
22
D
ASP
23
n
23
ASP
23
D
LYS
24
n
24
LYS
24
D
LEU
25
n
25
LEU
25
D
CYS
26
n
26
CYS
26
D
ILE
27
n
27
ILE
27
D
ALA
28
n
28
ALA
28
D
GLN
29
n
29
GLN
29
D
PRO
30
n
30
PRO
30
D
PRO
31
n
31
PRO
31
D
LEU
32
n
32
LEU
32
D
SER
33
n
33
SER
33
D
ARG
34
n
34
ARG
34
D
GLN
35
n
35
GLN
35
D
ILE
36
n
36
ILE
36
D
GLN
37
n
37
GLN
37
D
ASN
38
n
38
ASN
38
D
LEU
39
n
39
LEU
39
D
GLU
40
n
40
GLU
40
D
GLU
41
n
41
GLU
41
D
GLU
42
n
42
GLU
42
D
LEU
43
n
43
LEU
43
D
GLY
44
n
44
GLY
44
D
ILE
45
n
45
ILE
45
D
GLN
46
n
46
GLN
46
D
LEU
47
n
47
LEU
47
D
LEU
48
n
48
LEU
48
D
GLU
49
n
49
GLU
49
D
ARG
50
n
50
ARG
50
D
GLY
51
n
51
GLY
51
D
SER
52
n
52
SER
52
D
ARG
53
n
53
ARG
53
D
PRO
54
n
54
PRO
54
D
VAL
55
n
55
VAL
55
D
LYS
56
n
56
LYS
56
D
THR
57
n
57
THR
57
D
THR
58
n
58
THR
58
D
PRO
59
n
59
PRO
59
D
GLU
60
n
60
GLU
60
D
GLY
61
n
61
GLY
61
D
HIS
62
n
62
HIS
62
D
PHE
63
n
63
PHE
63
D
PHE
64
n
64
PHE
64
D
TYR
65
n
65
TYR
65
D
GLN
66
n
66
GLN
66
D
TYR
67
n
67
TYR
67
D
ALA
68
n
68
ALA
68
D
ILE
69
n
69
ILE
69
D
LYS
70
n
70
LYS
70
D
LEU
71
n
71
LEU
71
D
LEU
72
n
72
LEU
72
D
SER
73
n
73
SER
73
D
ASN
74
n
74
ASN
74
D
VAL
75
n
75
VAL
75
D
ASP
76
n
76
ASP
76
D
GLN
77
n
77
GLN
77
D
MET
78
n
78
MET
78
D
VAL
79
n
79
VAL
79
D
SER
80
n
80
SER
80
D
MET
81
n
81
MET
81
D
THR
82
n
82
THR
82
D
LYS
83
n
83
LYS
83
D
ARG
84
n
84
ARG
84
D
ILE
85
n
85
ILE
85
D
ALA
86
n
86
ALA
86
D
SER
87
n
87
SER
87
D
GLY
88
n
88
GLY
88
D
HIS
89
n
89
HIS
89
D
n
90
90
D
n
91
91
D
n
92
92
D
n
93
93
D
n
94
94
D
DT
1
n
1
DT
1
E
DT
2
n
2
DT
2
E
DT
3
n
3
DT
3
E
DA
4
n
4
DA
4
E
DT
5
n
5
DT
5
E
DA
6
n
6
DA
6
E
DT
7
n
7
DT
7
E
DA
8
n
8
DA
8
E
DC
9
n
9
DC
9
E
DC
10
n
10
DC
10
E
DT
11
n
11
DT
11
E
DT
12
n
12
DT
12
E
DT
13
n
13
DT
13
E
DT
14
n
14
DT
14
E
DT
15
n
15
DT
15
E
DA
16
n
16
DA
16
E
DG
17
n
17
DG
17
E
DT
18
n
18
DT
18
E
DA
19
n
19
DA
19
E
DT
20
n
20
DT
20
E
DG
21
n
21
DG
21
E
DC
22
n
22
DC
22
E
DA
23
n
23
DA
23
E
DA
24
n
24
DA
24
E
DA
25
n
25
DA
25
E
DT
1
n
1
DT
1
F
DT
2
n
2
DT
2
F
DT
3
n
3
DT
3
F
DG
4
n
4
DG
4
F
DC
5
n
5
DC
5
F
DA
6
n
6
DA
6
F
DT
7
n
7
DT
7
F
DA
8
n
8
DA
8
F
DC
9
n
9
DC
9
F
DT
10
n
10
DT
10
F
DA
11
n
11
DA
11
F
DA
12
n
12
DA
12
F
DA
13
n
13
DA
13
F
DA
14
n
14
DA
14
F
DA
15
n
15
DA
15
F
DG
16
n
16
DG
16
F
DG
17
n
17
DG
17
F
DT
18
n
18
DT
18
F
DA
19
n
19
DA
19
F
DT
20
n
20
DT
20
F
DA
21
n
21
DA
21
F
DT
22
n
22
DT
22
F
DA
23
n
23
DA
23
F
DA
24
n
24
DA
24
F
DA
25
n
25
DA
25
F
DT
1
n
1
DT
1
G
DT
2
n
2
DT
2
G
DT
3
n
3
DT
3
G
DA
4
n
4
DA
4
G
DT
5
n
5
DT
5
G
DA
6
n
6
DA
6
G
DT
7
n
7
DT
7
G
DA
8
n
8
DA
8
G
DC
9
n
9
DC
9
G
DC
10
n
10
DC
10
G
DT
11
n
11
DT
11
G
DT
12
n
12
DT
12
G
DT
13
n
13
DT
13
G
DT
14
n
14
DT
14
G
DT
15
n
15
DT
15
G
DA
16
n
16
DA
16
G
DG
17
n
17
DG
17
G
DT
18
n
18
DT
18
G
DA
19
n
19
DA
19
G
DT
20
n
20
DT
20
G
DG
21
n
21
DG
21
G
DC
22
n
22
DC
22
G
DA
23
n
23
DA
23
G
DA
24
n
24
DA
24
G
DA
25
n
25
DA
25
G
DT
1
n
1
DT
1
H
DT
2
n
2
DT
2
H
DT
3
n
3
DT
3
H
DG
4
n
4
DG
4
H
DC
5
n
5
DC
5
H
DA
6
n
6
DA
6
H
DT
7
n
7
DT
7
H
DA
8
n
8
DA
8
H
DC
9
n
9
DC
9
H
DT
10
n
10
DT
10
H
DA
11
n
11
DA
11
H
DA
12
n
12
DA
12
H
DA
13
n
13
DA
13
H
DA
14
n
14
DA
14
H
DA
15
n
15
DA
15
H
DG
16
n
16
DG
16
H
DG
17
n
17
DG
17
H
DT
18
n
18
DT
18
H
DA
19
n
19
DA
19
H
DT
20
n
20
DT
20
H
DA
21
n
21
DA
21
H
DT
22
n
22
DT
22
H
DA
23
n
23
DA
23
H
DA
24
n
24
DA
24
H
DA
25
n
25
DA
25
H
6.2433
0.1317
0.0368
5.1009
-0.5381
2.8932
-0.0227
0.0609
-0.0446
-0.2798
0.1602
0.3186
-0.1535
-0.1861
-0.1375
0.1406
-0.0065
-0.0290
0.4420
0.0468
0.1062
refined
-13.9433
-9.5411
-54.4561
X-RAY DIFFRACTION
3.3964
4.5217
-6.8980
10.7435
-10.8474
16.4982
-0.4673
-0.3350
-0.7895
-0.0247
-0.5921
-1.4099
0.3759
0.0516
1.0594
0.3896
0.0182
0.0312
0.8151
0.2036
0.6637
refined
-5.6288
-21.7672
-43.2598
X-RAY DIFFRACTION
0.6516
0.6713
-0.7806
8.4744
2.3047
13.0093
0.1849
-0.3024
0.1918
1.0544
-0.2747
0.1025
-0.8466
-0.1438
0.0898
0.6835
-0.1595
-0.0395
0.9215
0.0861
0.2705
refined
-6.1152
-8.5663
-27.7850
X-RAY DIFFRACTION
2.9825
8.6655
0.7226
40.7539
7.0619
1.9009
-0.4726
-0.0689
0.5304
1.4324
0.4861
1.8930
0.5216
0.0636
-0.0135
1.1102
-0.0231
0.1977
1.3288
0.1594
0.6173
refined
-14.8359
-11.8318
-26.5268
X-RAY DIFFRACTION
6.2105
-1.4778
-5.5977
21.0915
3.7435
5.3660
-0.1271
-1.3008
-0.0738
3.4439
0.2146
0.0492
0.5360
0.9957
-0.0875
1.0658
-0.1261
-0.0497
1.3393
0.4674
0.4381
refined
-7.9673
-18.5766
-19.2051
X-RAY DIFFRACTION
4.7933
3.9022
-5.0926
7.5459
-8.4366
13.2058
-0.1618
-0.5459
-0.6779
0.4976
-0.9650
-1.1894
-0.1721
0.8332
1.1268
0.3730
-0.0501
-0.0435
0.7032
0.1332
0.4252
refined
0.7089
-14.8061
-39.9771
X-RAY DIFFRACTION
56.8670
20.7685
38.4876
7.6038
14.0636
26.0615
2.5182
0.7968
-5.3087
0.6350
0.7623
-2.0483
1.4835
0.7226
-3.2805
2.2735
-0.2927
0.5043
2.7031
-0.4621
1.5228
refined
10.2951
-8.9190
-57.5560
X-RAY DIFFRACTION
3.1412
-2.4496
-0.1068
3.8490
0.5207
7.5914
0.0234
-0.0796
-0.8640
-0.0456
-0.1168
-0.0981
0.5714
0.4148
0.0934
0.1888
0.0164
0.0098
0.6334
0.2966
0.8616
refined
-0.5911
-35.8095
-42.6098
X-RAY DIFFRACTION
4.4767
-2.5137
-0.3203
5.9325
-0.0904
4.3960
0.4161
0.0964
-0.4614
-0.5563
-0.3686
-0.3001
0.0449
0.3106
-0.0475
0.1969
-0.0642
0.0307
0.4909
0.0861
0.3709
refined
-6.4470
-28.3979
-49.1183
X-RAY DIFFRACTION
4.0653
0.7697
-3.6293
6.6596
-2.8833
4.0726
-0.0775
0.0328
-0.7072
-0.0977
-0.1955
0.3402
0.2473
-0.1092
0.2730
0.3404
-0.1746
-0.1742
0.7733
0.2800
0.8177
refined
-25.8273
-38.3134
-41.3953
X-RAY DIFFRACTION
6.4778
-1.1518
-1.0214
6.4271
-0.3002
2.7351
0.3056
0.6023
-0.2126
-0.3977
-0.1272
0.3680
0.0407
-0.7279
-0.1784
0.1428
-0.0707
-0.0898
0.5622
0.1176
0.3244
refined
-21.9995
-31.5318
-49.7849
X-RAY DIFFRACTION
8.6426
8.4913
12.7691
19.6231
38.5527
78.8607
0.5522
-0.0769
1.8004
-0.9589
0.8623
-0.0072
-2.7991
1.8222
-1.4144
2.4767
-0.4403
0.0008
1.7016
0.1737
0.7576
refined
-9.5546
-4.9207
-7.4121
X-RAY DIFFRACTION
1.7905
0.2867
0.1281
3.5783
-0.7524
7.7108
0.2132
-0.3719
0.1129
0.1874
0.2663
0.5591
-0.9790
-0.8548
-0.4795
0.2543
0.1147
0.1054
0.6722
0.0465
0.4721
refined
-24.4101
-1.5012
-44.3150
X-RAY DIFFRACTION
3.6121
0.2519
0.5287
2.9543
-1.0672
5.0897
0.0352
-0.1857
0.2430
0.0265
0.5241
0.8789
-0.4783
-0.5852
-0.5593
0.2607
0.0940
-0.0265
0.5495
0.1156
0.4556
refined
-25.9147
-2.3719
-53.0607
X-RAY DIFFRACTION
4.2090
-0.2761
1.0622
0.2076
-1.3702
12.4448
0.6170
-0.4792
-0.4457
0.2995
-0.0255
0.1960
-1.1419
-0.5804
-0.5915
1.5318
-0.1863
0.2000
1.1884
-0.0273
0.5339
refined
-16.6419
-3.9894
-14.1440
X-RAY DIFFRACTION
7.0694
0.1124
-0.1298
1.6901
-0.0445
0.9377
-0.2971
-1.1534
-1.2041
0.3217
0.0305
-0.0337
0.3669
-0.0830
0.2666
0.3035
-0.0723
0.0891
0.8240
0.4557
0.8348
refined
-21.9494
-45.6653
-30.8347
X-RAY DIFFRACTION
16.2152
-1.3884
-3.9655
11.8041
-5.9835
8.0044
-0.7687
-0.1526
-0.8560
-0.8457
-0.0159
-0.9403
1.1363
0.6004
0.7846
0.4900
0.1944
-0.1661
1.1300
0.2070
1.1679
refined
17.9516
-44.1026
-38.6351
X-RAY DIFFRACTION
58.4389
13.8205
31.0955
9.4856
5.9988
16.8427
0.0595
-1.5538
-0.5338
0.8583
0.2258
-0.1955
-0.1637
-0.9366
-0.2853
0.2375
0.1750
0.0793
1.4326
0.3114
1.2019
refined
16.9490
-39.0030
-36.9206
X-RAY DIFFRACTION
9.4101
-0.2279
-1.0016
1.4931
0.1660
0.9557
-0.3478
-0.8209
-0.8541
0.3136
0.0141
0.0106
0.4864
-0.1659
0.3337
0.3500
-0.0568
0.0652
0.8569
0.4784
0.9762
refined
-20.9645
-46.1753
-30.6570
X-RAY DIFFRACTION
A
1
A
58
X-RAY DIFFRACTION
1
A
59
A
89
X-RAY DIFFRACTION
2
B
1
B
28
X-RAY DIFFRACTION
3
B
29
B
43
X-RAY DIFFRACTION
4
B
44
B
58
X-RAY DIFFRACTION
5
B
59
B
87
X-RAY DIFFRACTION
6
B
88
B
93
X-RAY DIFFRACTION
7
C
1
C
43
X-RAY DIFFRACTION
8
C
44
C
90
X-RAY DIFFRACTION
9
D
1
D
43
X-RAY DIFFRACTION
10
D
44
D
89
X-RAY DIFFRACTION
11
E
1
E
5
X-RAY DIFFRACTION
12
E
6
E
25
X-RAY DIFFRACTION
13
F
1
F
15
X-RAY DIFFRACTION
14
F
16
F
25
X-RAY DIFFRACTION
15
G
1
G
19
X-RAY DIFFRACTION
16
G
20
G
25
X-RAY DIFFRACTION
17
H
1
H
6
X-RAY DIFFRACTION
18
H
7
H
25
X-RAY DIFFRACTION
19
author_defined_assembly
4
tetrameric
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA
8
octameric
20370
-130
27660
A
MLI
101
I
O8
MLI
1_555
C
NA
102
K
NA
NA
1_555
C
ASP
76
C
OD1
ASP
76
1_555
140.0
A
MLI
101
I
O8
MLI
1_555
C
NA
102
K
NA
NA
1_555
C
MLI
101
J
O8
MLI
1_555
83.1
C
ASP
76
C
OD1
ASP
76
1_555
C
NA
102
K
NA
NA
1_555
C
MLI
101
J
O8
MLI
1_555
114.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
49
A
N
GLU
49
A
O
LYS
56
A
O
LYS
56
B
N
GLU
49
B
N
GLU
49
B
O
LYS
56
B
O
LYS
56
C
N
GLU
49
C
N
GLU
49
C
O
LYS
56
C
O
LYS
56
1
A
HOH
203
L
HOH
1
A
HIS
90
A
HIS
90
1
Y
1
A
HIS
91
A
HIS
91
1
Y
1
A
HIS
92
A
HIS
92
1
Y
1
A
HIS
93
A
HIS
93
1
Y
1
A
HIS
94
A
HIS
94
1
Y
1
B
HIS
94
B
HIS
94
1
Y
1
C
HIS
91
C
HIS
91
1
Y
1
C
HIS
92
C
HIS
92
1
Y
1
C
HIS
93
C
HIS
93
1
Y
1
C
HIS
94
C
HIS
94
1
Y
1
D
HIS
90
D
HIS
90
1
Y
1
D
HIS
91
D
HIS
91
1
Y
1
D
HIS
92
D
HIS
92
1
Y
1
D
HIS
93
D
HIS
93
1
Y
1
D
HIS
94
D
HIS
94
1
Y
1
C
H
OG
OP2
SER
DA
33
6
1.91
1
A
GLN
16
44.16
29.70
1
A
SER
52
54.60
84.65
1
B
SER
17
-172.51
128.48
1
B
PRO
54
-53.61
87.23
1
C
SER
52
-169.74
106.17
1
D
ARG
53
-82.21
-132.49
1
D
PRO
54
1.91
65.61
268.450
108.1734
55.020
0.8500
0.0000
0.0000
0.8500
0.0000
-1.7000
0.9560
0.9510
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED
0.2029
0.1782
0.1794
3.10
48.95
1523
30320
5.0000
91.9700
0.1990
0.1710
1.000
0.500
24.6680
0.1920
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.4330
0.2730
0.8000
0.8000
1.2000
PDB entry 3M1E
MAXIMUM LIKELIHOOD
MASK
3.10
48.95
20
4995
15
2038
2922
0.004
0.016
5275
0.001
0.020
4131
0.994
1.660
7927
0.843
3.001
9510
5.336
5.000
357
35.280
23.586
145
17.221
15.000
557
14.370
15.000
24
0.062
0.200
841
0.005
0.020
4507
0.001
0.020
1024
1
A
1
1452
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.460
0.500
1
A
1
1452
X-RAY DIFFRACTION
MEDIUM THERMAL
7.740
2.000
1
B
2
1453
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.500
0.500
1
B
2
1453
X-RAY DIFFRACTION
MEDIUM THERMAL
12.580
2.000
1
E
3
795
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.430
0.500
1
E
3
795
X-RAY DIFFRACTION
MEDIUM THERMAL
11.840
2.000
1
F
4
798
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.410
0.500
1
F
4
798
X-RAY DIFFRACTION
MEDIUM THERMAL
8.300
2.000
0.294
0.250
3.165
68
1481
2298
20
67.406
0.256
0.215
3.252
102
1607
2185
20
78.215
0.263
0.229
3.346
114
1662
2103
20
84.451
0.254
0.228
3.449
80
1802
2052
20
91.715
0.241
0.206
3.562
94
1753
1959
20
94.283
0.239
0.196
3.687
93
1695
1884
20
94.904
0.181
0.189
3.826
70
1686
1837
20
95.591
0.250
0.181
3.982
85
1620
1762
20
96.765
0.223
0.166
4.159
78
1532
1673
20
96.234
0.197
0.141
4.361
82
1465
1588
20
97.418
0.143
0.132
4.597
75
1401
1529
20
96.534
0.161
0.149
4.875
77
1290
1417
20
96.471
0.177
0.175
5.211
64
1236
1345
20
96.654
0.209
0.190
5.628
57
1139
1241
20
96.374
0.283
0.222
6.163
49
1045
1143
20
95.713
0.206
0.182
6.888
50
929
1018
20
96.169
0.175
0.135
7.949
38
816
901
20
94.784
0.149
0.141
9.722
47
658
746
20
94.504
0.155
0.162
13.697
16
503
559
20
92.844
0.291
0.276
110.657
6
244
303
20
82.508
99.4
3.100
200.000
4IHS
30569
0.114
3.317
1
12.800
8.200
92.700
0.399
3.100
3.210
2350
3.964
1
3.000
72.500
0.322
3.210
3.340
2714
3.544
1
4.100
84.200
0.401
3.340
3.490
3021
3.705
1
5.900
93.000
0.346
3.490
3.680
3120
3.311
1
8.000
96.100
0.258
3.680
3.910
3158
3.495
1
9.500
97.200
0.217
3.910
4.210
3199
3.840
1
10.300
97.700
0.145
4.210
4.630
3223
2.846
1
10.300
97.500
0.116
4.630
5.300
3203
2.846
1
10.200
97.000
0.100
5.300
6.680
3227
2.967
1
10.000
96.500
0.054
6.680
200.000
3354
3.595
1
8.700
94.300
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
24/04/2001
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
refmac_5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of BenM_DBD/catB site 1 DNA Complex
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLU
2
A
GLU
2
HELX_P
A
GLU
15
A
GLU
15
1
1
14
A
SER
17
A
SER
17
HELX_P
A
CYS
26
A
CYS
26
1
2
10
A
ALA
28
A
ALA
28
HELX_P
A
GLY
44
A
GLY
44
1
3
17
A
THR
58
A
THR
58
HELX_P
A
SER
87
A
SER
87
1
4
30
B
GLU
2
B
GLU
2
HELX_P
B
GLN
16
B
GLN
16
1
5
15
B
SER
17
B
SER
17
HELX_P
B
LEU
25
B
LEU
25
1
6
9
B
ALA
28
B
ALA
28
HELX_P
B
GLY
44
B
GLY
44
1
7
17
B
THR
58
B
THR
58
HELX_P
B
SER
87
B
SER
87
1
8
30
C
GLU
2
C
GLU
2
HELX_P
C
GLN
16
C
GLN
16
1
9
15
C
SER
17
C
SER
17
HELX_P
C
CYS
26
C
CYS
26
1
10
10
C
ALA
28
C
ALA
28
HELX_P
C
GLY
44
C
GLY
44
1
11
17
C
THR
58
C
THR
58
HELX_P
C
SER
87
C
SER
87
1
12
30
D
GLU
2
D
GLU
2
HELX_P
D
GLN
16
D
GLN
16
1
13
15
D
SER
17
D
SER
17
HELX_P
D
LEU
25
D
LEU
25
1
14
9
D
ALA
28
D
ALA
28
HELX_P
D
GLY
44
D
GLY
44
1
15
17
D
THR
58
D
THR
58
HELX_P
D
SER
87
D
SER
87
1
16
30
metalc
2.613
A
MLI
101
I
O8
MLI
1_555
C
NA
102
K
NA
NA
1_555
metalc
2.705
C
ASP
76
C
OD1
ASP
76
1_555
C
NA
102
K
NA
NA
1_555
metalc
2.664
C
MLI
101
J
O8
MLI
1_555
C
NA
102
K
NA
NA
1_555
hydrog
WATSON-CRICK
E
DT
1
E
N3
DT
1
1_555
F
DA
25
F
N1
DA
25
1_555
hydrog
WATSON-CRICK
E
DT
1
E
O4
DT
1
1_555
F
DA
25
F
N6
DA
25
1_555
hydrog
WATSON-CRICK
E
DT
2
E
N3
DT
2
1_555
F
DA
24
F
N1
DA
24
1_555
hydrog
WATSON-CRICK
E
DT
2
E
O4
DT
2
1_555
F
DA
24
F
N6
DA
24
1_555
hydrog
WATSON-CRICK
E
DT
3
E
N3
DT
3
1_555
F
DA
23
F
N1
DA
23
1_555
hydrog
WATSON-CRICK
E
DT
3
E
O4
DT
3
1_555
F
DA
23
F
N6
DA
23
1_555
hydrog
WATSON-CRICK
E
DA
4
E
N1
DA
4
1_555
F
DT
22
F
N3
DT
22
1_555
hydrog
WATSON-CRICK
E
DA
4
E
N6
DA
4
1_555
F
DT
22
F
O4
DT
22
1_555
hydrog
WATSON-CRICK
E
DT
5
E
N3
DT
5
1_555
F
DA
21
F
N1
DA
21
1_555
hydrog
WATSON-CRICK
E
DT
5
E
O4
DT
5
1_555
F
DA
21
F
N6
DA
21
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N1
DA
6
1_555
F
DT
20
F
N3
DT
20
1_555
hydrog
WATSON-CRICK
E
DA
6
E
N6
DA
6
1_555
F
DT
20
F
O4
DT
20
1_555
hydrog
WATSON-CRICK
E
DT
7
E
N3
DT
7
1_555
F
DA
19
F
N1
DA
19
1_555
hydrog
WATSON-CRICK
E
DT
7
E
O4
DT
7
1_555
F
DA
19
F
N6
DA
19
1_555
hydrog
WATSON-CRICK
E
DA
8
E
N1
DA
8
1_555
F
DT
18
F
N3
DT
18
1_555
hydrog
WATSON-CRICK
E
DA
8
E
N6
DA
8
1_555
F
DT
18
F
O4
DT
18
1_555
hydrog
WATSON-CRICK
E
DC
9
E
N3
DC
9
1_555
F
DG
17
F
N1
DG
17
1_555
hydrog
WATSON-CRICK
E
DC
9
E
N4
DC
9
1_555
F
DG
17
F
O6
DG
17
1_555
hydrog
WATSON-CRICK
E
DC
9
E
O2
DC
9
1_555
F
DG
17
F
N2
DG
17
1_555
hydrog
WATSON-CRICK
E
DC
10
E
N3
DC
10
1_555
F
DG
16
F
N1
DG
16
1_555
hydrog
WATSON-CRICK
E
DC
10
E
N4
DC
10
1_555
F
DG
16
F
O6
DG
16
1_555
hydrog
WATSON-CRICK
E
DC
10
E
O2
DC
10
1_555
F
DG
16
F
N2
DG
16
1_555
hydrog
WATSON-CRICK
E
DT
11
E
N3
DT
11
1_555
F
DA
15
F
N1
DA
15
1_555
hydrog
WATSON-CRICK
E
DT
11
E
O4
DT
11
1_555
F
DA
15
F
N6
DA
15
1_555
hydrog
WATSON-CRICK
E
DT
12
E
N3
DT
12
1_555
F
DA
14
F
N1
DA
14
1_555
hydrog
WATSON-CRICK
E
DT
12
E
O4
DT
12
1_555
F
DA
14
F
N6
DA
14
1_555
hydrog
WATSON-CRICK
E
DT
13
E
N3
DT
13
1_555
F
DA
13
F
N1
DA
13
1_555
hydrog
WATSON-CRICK
E
DT
13
E
O4
DT
13
1_555
F
DA
13
F
N6
DA
13
1_555
hydrog
WATSON-CRICK
E
DT
14
E
N3
DT
14
1_555
F
DA
12
F
N1
DA
12
1_555
hydrog
WATSON-CRICK
E
DT
14
E
O4
DT
14
1_555
F
DA
12
F
N6
DA
12
1_555
hydrog
WATSON-CRICK
E
DT
15
E
N3
DT
15
1_555
F
DA
11
F
N1
DA
11
1_555
hydrog
WATSON-CRICK
E
DT
15
E
O4
DT
15
1_555
F
DA
11
F
N6
DA
11
1_555
hydrog
WATSON-CRICK
E
DA
16
E
N1
DA
16
1_555
F
DT
10
F
N3
DT
10
1_555
hydrog
WATSON-CRICK
E
DA
16
E
N6
DA
16
1_555
F
DT
10
F
O4
DT
10
1_555
hydrog
WATSON-CRICK
E
DG
17
E
N1
DG
17
1_555
F
DC
9
F
N3
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
17
E
N2
DG
17
1_555
F
DC
9
F
O2
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
17
E
O6
DG
17
1_555
F
DC
9
F
N4
DC
9
1_555
hydrog
WATSON-CRICK
E
DT
18
E
N3
DT
18
1_555
F
DA
8
F
N1
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
18
E
O4
DT
18
1_555
F
DA
8
F
N6
DA
8
1_555
hydrog
WATSON-CRICK
E
DA
19
E
N1
DA
19
1_555
F
DT
7
F
N3
DT
7
1_555
hydrog
WATSON-CRICK
E
DA
19
E
N6
DA
19
1_555
F
DT
7
F
O4
DT
7
1_555
hydrog
WATSON-CRICK
E
DT
20
E
N3
DT
20
1_555
F
DA
6
F
N1
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
20
E
O4
DT
20
1_555
F
DA
6
F
N6
DA
6
1_555
hydrog
WATSON-CRICK
E
DG
21
E
N1
DG
21
1_555
F
DC
5
F
N3
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
21
E
N2
DG
21
1_555
F
DC
5
F
O2
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
21
E
O6
DG
21
1_555
F
DC
5
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
DC
22
E
N3
DC
22
1_555
F
DG
4
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
22
E
N4
DC
22
1_555
F
DG
4
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
22
E
O2
DC
22
1_555
F
DG
4
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DA
23
E
N1
DA
23
1_555
F
DT
3
F
N3
DT
3
1_555
hydrog
WATSON-CRICK
E
DA
23
E
N6
DA
23
1_555
F
DT
3
F
O4
DT
3
1_555
hydrog
DA-DT PAIR
E
DA
24
E
N6
DA
24
1_555
F
DT
1
F
O4
DT
1
1_555
hydrog
WATSON-CRICK
E
DA
24
E
N1
DA
24
1_555
F
DT
2
F
N3
DT
2
1_555
hydrog
WATSON-CRICK
E
DA
24
E
N6
DA
24
1_555
F
DT
2
F
O4
DT
2
1_555
hydrog
WATSON-CRICK
E
DA
25
E
N1
DA
25
1_555
F
DT
1
F
N3
DT
1
1_555
hydrog
WATSON-CRICK
E
DA
25
E
N6
DA
25
1_555
F
DT
1
F
O4
DT
1
1_555
hydrog
WATSON-CRICK
G
DT
1
G
N3
DT
1
1_555
H
DA
25
H
N1
DA
25
1_555
hydrog
WATSON-CRICK
G
DT
1
G
O4
DT
1
1_555
H
DA
25
H
N6
DA
25
1_555
hydrog
WATSON-CRICK
G
DT
2
G
N3
DT
2
1_555
H
DA
24
H
N1
DA
24
1_555
hydrog
WATSON-CRICK
G
DT
2
G
O4
DT
2
1_555
H
DA
24
H
N6
DA
24
1_555
hydrog
WATSON-CRICK
G
DT
3
G
N3
DT
3
1_555
H
DA
23
H
N1
DA
23
1_555
hydrog
WATSON-CRICK
G
DT
3
G
O4
DT
3
1_555
H
DA
23
H
N6
DA
23
1_555
hydrog
WATSON-CRICK
G
DA
4
G
N1
DA
4
1_555
H
DT
22
H
N3
DT
22
1_555
hydrog
WATSON-CRICK
G
DA
4
G
N6
DA
4
1_555
H
DT
22
H
O4
DT
22
1_555
hydrog
WATSON-CRICK
G
DT
5
G
N3
DT
5
1_555
H
DA
21
H
N1
DA
21
1_555
hydrog
WATSON-CRICK
G
DT
5
G
O4
DT
5
1_555
H
DA
21
H
N6
DA
21
1_555
hydrog
WATSON-CRICK
G
DA
6
G
N1
DA
6
1_555
H
DT
20
H
N3
DT
20
1_555
hydrog
WATSON-CRICK
G
DA
6
G
N6
DA
6
1_555
H
DT
20
H
O4
DT
20
1_555
hydrog
WATSON-CRICK
G
DT
7
G
N3
DT
7
1_555
H
DA
19
H
N1
DA
19
1_555
hydrog
WATSON-CRICK
G
DT
7
G
O4
DT
7
1_555
H
DA
19
H
N6
DA
19
1_555
hydrog
WATSON-CRICK
G
DA
8
G
N1
DA
8
1_555
H
DT
18
H
N3
DT
18
1_555
hydrog
WATSON-CRICK
G
DA
8
G
N6
DA
8
1_555
H
DT
18
H
O4
DT
18
1_555
hydrog
WATSON-CRICK
G
DC
9
G
N3
DC
9
1_555
H
DG
17
H
N1
DG
17
1_555
hydrog
WATSON-CRICK
G
DC
9
G
N4
DC
9
1_555
H
DG
17
H
O6
DG
17
1_555
hydrog
WATSON-CRICK
G
DC
9
G
O2
DC
9
1_555
H
DG
17
H
N2
DG
17
1_555
hydrog
WATSON-CRICK
G
DC
10
G
N3
DC
10
1_555
H
DG
16
H
N1
DG
16
1_555
hydrog
WATSON-CRICK
G
DC
10
G
N4
DC
10
1_555
H
DG
16
H
O6
DG
16
1_555
hydrog
WATSON-CRICK
G
DC
10
G
O2
DC
10
1_555
H
DG
16
H
N2
DG
16
1_555
hydrog
WATSON-CRICK
G
DT
11
G
N3
DT
11
1_555
H
DA
15
H
N1
DA
15
1_555
hydrog
WATSON-CRICK
G
DT
11
G
O4
DT
11
1_555
H
DA
15
H
N6
DA
15
1_555
hydrog
WATSON-CRICK
G
DT
12
G
N3
DT
12
1_555
H
DA
14
H
N1
DA
14
1_555
hydrog
WATSON-CRICK
G
DT
12
G
O4
DT
12
1_555
H
DA
14
H
N6
DA
14
1_555
hydrog
WATSON-CRICK
G
DT
13
G
N3
DT
13
1_555
H
DA
13
H
N1
DA
13
1_555
hydrog
WATSON-CRICK
G
DT
13
G
O4
DT
13
1_555
H
DA
13
H
N6
DA
13
1_555
hydrog
WATSON-CRICK
G
DT
14
G
N3
DT
14
1_555
H
DA
12
H
N1
DA
12
1_555
hydrog
WATSON-CRICK
G
DT
14
G
O4
DT
14
1_555
H
DA
12
H
N6
DA
12
1_555
hydrog
WATSON-CRICK
G
DT
15
G
N3
DT
15
1_555
H
DA
11
H
N1
DA
11
1_555
hydrog
WATSON-CRICK
G
DT
15
G
O4
DT
15
1_555
H
DA
11
H
N6
DA
11
1_555
hydrog
WATSON-CRICK
G
DA
16
G
N1
DA
16
1_555
H
DT
10
H
N3
DT
10
1_555
hydrog
WATSON-CRICK
G
DA
16
G
N6
DA
16
1_555
H
DT
10
H
O4
DT
10
1_555
hydrog
WATSON-CRICK
G
DG
17
G
N1
DG
17
1_555
H
DC
9
H
N3
DC
9
1_555
hydrog
WATSON-CRICK
G
DG
17
G
N2
DG
17
1_555
H
DC
9
H
O2
DC
9
1_555
hydrog
WATSON-CRICK
G
DG
17
G
O6
DG
17
1_555
H
DC
9
H
N4
DC
9
1_555
hydrog
WATSON-CRICK
G
DT
18
G
N3
DT
18
1_555
H
DA
8
H
N1
DA
8
1_555
hydrog
WATSON-CRICK
G
DT
18
G
O4
DT
18
1_555
H
DA
8
H
N6
DA
8
1_555
hydrog
WATSON-CRICK
G
DA
19
G
N1
DA
19
1_555
H
DT
7
H
N3
DT
7
1_555
hydrog
WATSON-CRICK
G
DA
19
G
N6
DA
19
1_555
H
DT
7
H
O4
DT
7
1_555
hydrog
WATSON-CRICK
G
DT
20
G
N3
DT
20
1_555
H
DA
6
H
N1
DA
6
1_555
hydrog
WATSON-CRICK
G
DT
20
G
O4
DT
20
1_555
H
DA
6
H
N6
DA
6
1_555
hydrog
WATSON-CRICK
G
DG
21
G
N1
DG
21
1_555
H
DC
5
H
N3
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
21
G
N2
DG
21
1_555
H
DC
5
H
O2
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
21
G
O6
DG
21
1_555
H
DC
5
H
N4
DC
5
1_555
hydrog
WATSON-CRICK
G
DC
22
G
N3
DC
22
1_555
H
DG
4
H
N1
DG
4
1_555
hydrog
WATSON-CRICK
G
DC
22
G
N4
DC
22
1_555
H
DG
4
H
O6
DG
4
1_555
hydrog
WATSON-CRICK
G
DC
22
G
O2
DC
22
1_555
H
DG
4
H
N2
DG
4
1_555
hydrog
WATSON-CRICK
G
DA
23
G
N1
DA
23
1_555
H
DT
3
H
N3
DT
3
1_555
hydrog
WATSON-CRICK
G
DA
23
G
N6
DA
23
1_555
H
DT
3
H
O4
DT
3
1_555
hydrog
DA-DT PAIR
G
DA
24
G
N6
DA
24
1_555
H
DT
1
H
O4
DT
1
1_555
hydrog
WATSON-CRICK
G
DA
24
G
N1
DA
24
1_555
H
DT
2
H
N3
DT
2
1_555
hydrog
WATSON-CRICK
G
DA
24
G
N6
DA
24
1_555
H
DT
2
H
O4
DT
2
1_555
hydrog
WATSON-CRICK
G
DA
25
G
N1
DA
25
1_555
H
DT
1
H
N3
DT
1
1_555
hydrog
WATSON-CRICK
G
DA
25
G
N6
DA
25
1_555
H
DT
1
H
O4
DT
1
1_555
Transcription/DNA
wHTH, HTH, Transcriptional regulator, catB promoter, Transcription-DNA complex
A
GLY
51
A
GLY
51
1
A
SER
52
A
SER
52
-18.56
A
ARG
53
A
ARG
53
1
A
PRO
54
A
PRO
54
1.18
C
ARG
53
C
ARG
53
1
C
PRO
54
C
PRO
54
-1.99
A
C
B
D
E
G
F
H
BENM_ACIAD
UNP
1
1
O68014
MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS
MTKRIAS
4IHS
PDB
2
4IHS
TTTATATACCTTTTTAGTATGCAAA
4IHS
PDB
3
4IHS
TTTGCATACTAAAAAGGTATATAAA
1
87
4IHS
1
87
O68014
A
1
1
87
1
87
4IHS
1
87
O68014
B
1
1
87
1
87
4IHS
1
87
O68014
C
1
1
87
1
87
4IHS
1
87
O68014
D
1
1
87
1
25
4IHS
1
25
4IHS
E
2
1
25
1
25
4IHS
1
25
4IHS
G
2
1
25
1
25
4IHS
1
25
4IHS
F
3
1
25
1
25
4IHS
1
25
4IHS
H
3
1
25
1
expression tag
GLY
88
4IHS
A
O68014
UNP
88
1
expression tag
HIS
89
4IHS
A
O68014
UNP
89
1
expression tag
HIS
90
4IHS
A
O68014
UNP
90
1
expression tag
HIS
91
4IHS
A
O68014
UNP
91
1
expression tag
HIS
92
4IHS
A
O68014
UNP
92
1
expression tag
HIS
93
4IHS
A
O68014
UNP
93
1
expression tag
HIS
94
4IHS
A
O68014
UNP
94
2
expression tag
GLY
88
4IHS
B
O68014
UNP
88
2
expression tag
HIS
89
4IHS
B
O68014
UNP
89
2
expression tag
HIS
90
4IHS
B
O68014
UNP
90
2
expression tag
HIS
91
4IHS
B
O68014
UNP
91
2
expression tag
HIS
92
4IHS
B
O68014
UNP
92
2
expression tag
HIS
93
4IHS
B
O68014
UNP
93
2
expression tag
HIS
94
4IHS
B
O68014
UNP
94
3
expression tag
GLY
88
4IHS
C
O68014
UNP
88
3
expression tag
HIS
89
4IHS
C
O68014
UNP
89
3
expression tag
HIS
90
4IHS
C
O68014
UNP
90
3
expression tag
HIS
91
4IHS
C
O68014
UNP
91
3
expression tag
HIS
92
4IHS
C
O68014
UNP
92
3
expression tag
HIS
93
4IHS
C
O68014
UNP
93
3
expression tag
HIS
94
4IHS
C
O68014
UNP
94
4
expression tag
GLY
88
4IHS
D
O68014
UNP
88
4
expression tag
HIS
89
4IHS
D
O68014
UNP
89
4
expression tag
HIS
90
4IHS
D
O68014
UNP
90
4
expression tag
HIS
91
4IHS
D
O68014
UNP
91
4
expression tag
HIS
92
4IHS
D
O68014
UNP
92
4
expression tag
HIS
93
4IHS
D
O68014
UNP
93
4
expression tag
HIS
94
4IHS
D
O68014
UNP
94
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
LEU
48
A
LEU
48
A
GLU
49
A
GLU
49
A
LYS
56
A
LYS
56
A
THR
57
A
THR
57
B
LEU
48
B
LEU
48
B
GLU
49
B
GLU
49
B
LYS
56
B
LYS
56
B
THR
57
B
THR
57
C
LEU
48
C
LEU
48
C
GLU
49
C
GLU
49
C
LYS
56
C
LYS
56
C
THR
57
C
THR
57
BINDING SITE FOR RESIDUE MLI A 101
A
MLI
101
Software
9
BINDING SITE FOR RESIDUE MLI C 101
C
MLI
101
Software
9
BINDING SITE FOR RESIDUE NA C 102
C
NA
102
Software
3
A
ASP
76
A
ASP
76
9
1_555
A
VAL
79
A
VAL
79
9
1_555
A
SER
80
A
SER
80
9
1_555
A
HOH
205
L
HOH
9
1_555
C
ARG
7
C
ARG
7
9
1_555
C
MLI
101
J
MLI
9
1_555
C
NA
102
K
NA
9
1_555
D
MET
1
D
MET
1
9
1_555
D
GLU
42
D
GLU
42
9
1_555
A
ARG
7
A
ARG
7
9
1_555
A
MLI
101
I
MLI
9
1_555
A
HOH
205
L
HOH
9
1_555
B
MET
1
B
MET
1
9
1_555
C
ASP
76
C
ASP
76
9
1_555
C
SER
80
C
SER
80
9
1_555
C
LYS
83
C
LYS
83
9
1_555
C
NA
102
K
NA
9
1_555
C
HOH
203
N
HOH
9
1_555
A
MLI
101
I
MLI
3
1_555
C
ASP
76
C
ASP
76
3
1_555
C
MLI
101
J
MLI
3
1_555
94
P 42 21 2