0.016962 0.000000 0.000000 0.000000 0.003330 0.000000 0.000000 0.000000 0.021738 0.000000 0.000000 0.000000 Alanazi, A. Momany, C. Neidle, E.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 58.956 300.295 46.003 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 69 1995 2007 10.1107/S0907444913017320 24100318 The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. 2013 UK MOL.MICROBIOL. MOMIEE 2007 0950-382X 72(4) 881 894 19400783 Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1. 2009 UK J.Mol.Biol. JMOBAK 0070 0022-2836 367(3) 616 629 17291527 Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator 2007 DK Acta Crystallogr.,Sect.F 1744-3091 63(Pt 5) 361 368 17565172 Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family.r 2007 10.2210/pdb4iht/pdb pdb_00004iht 100 1 CCD 2009-04-10 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.97934 1.0 19-ID APS 0.97934 SYNCHROTRON APS BEAMLINE 19-ID 10937.559 HTH-type transcriptional regulator BenM UNP residues 1-87 4 man polymer 7654.997 benA site 1 DNA 2 syn polymer 7695.021 benA site 1 DNA - complement 2 syn polymer 18.015 water 3 nat water Ben and cat operon transcriptional regulator, TRANSCRIPTIONAL REGULATOR BENM DNA BINDING DOMAIN no no MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIASGHHHHHH MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIASGHHHHHH A,B,C,D polypeptide(L) no no (DT)(DA)(DA)(DA)(DA)(DA)(DT)(DA)(DC)(DT)(DC)(DC)(DA)(DT)(DA)(DG)(DG)(DT)(DA)(DT) (DT)(DT)(DT)(DA)(DT) TAAAAATACTCCATAGGTATTTTAT E,G polydeoxyribonucleotide no no (DA)(DT)(DA)(DA)(DA)(DA)(DT)(DA)(DC)(DC)(DT)(DA)(DT)(DG)(DG)(DA)(DG)(DT)(DA)(DT) (DT)(DT)(DT)(DT)(DA) ATAAAATACCTATGGAGTATTTTTA F,H polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ADP1 sample ACIAD1435, benM, benR 62977 Acinetobacter sp. 469008 Escherichia coli BL21(DE3)RIL plasmid pET21B 1 2.73 55.02 MICROBATCH UNDER OIL 6.5 Equal volumes of precipitant, protein solution and DNA. Precipitant: Optimized index screen 79- 25 mM bis-tris, 25% PEG 3000, 50 mM ammonium acetate. Protein: 20 mM Tris base (pH 8.0), 0.5 M NaCl, 10% glycerol, 150 mM imidazole, 10 mM BME, MICROBATCH UNDER OIL, temperature 288K 288 -3.991 1 20 E 1 F 25 2.097 E_DT1:DA25_F 1 -20.138 -0.208 0.033 -0.191 -4.993 1 20 E 2 F 24 -7.283 E_DA2:DT24_F 2 -3.218 0.854 -0.686 -0.092 5.551 1 20 E 3 F 23 5.743 E_DA3:DT23_F 3 -17.564 0.270 0.638 -0.100 8.816 1 20 E 4 F 22 -3.524 E_DA4:DT22_F 4 -15.019 0.165 0.190 -0.051 4.684 1 20 E 5 F 21 1.417 E_DA5:DT21_F 5 -9.843 0.106 -0.085 0.158 -3.373 1 20 E 6 F 20 -0.266 E_DA6:DT20_F 6 -12.592 -0.363 0.486 -0.278 -1.315 1 20 E 7 F 19 -5.417 E_DT7:DA19_F 7 -10.077 -0.361 0.553 -0.139 8.294 1 20 E 8 F 18 -5.401 E_DA8:DT18_F 8 0.464 0.788 0.379 -0.180 9.886 1 E 9 F 17 7.623 E_DC9:DG17_F 9 -7.008 1.128 0.206 0.074 4.920 1 20 E 10 F 16 1.268 E_DT10:DA16_F 10 -13.338 -0.111 -0.199 -0.210 -0.230 1 19 E 11 F 15 6.499 E_DC11:DG15_F 11 -13.128 -0.103 0.332 -0.065 -1.465 1 19 E 12 F 14 4.122 E_DC12:DG14_F 12 1.504 -0.270 -0.112 -0.276 0.147 1 20 E 13 F 13 -1.353 E_DA13:DT13_F 13 -19.192 0.408 0.237 0.140 -1.596 1 20 E 14 F 12 0.890 E_DT14:DA12_F 14 -0.781 0.204 0.186 -0.558 15.169 1 20 E 15 F 11 -9.179 E_DA15:DT11_F 15 -14.238 0.108 0.490 -0.255 2.540 1 19 E 16 F 10 0.282 E_DG16:DC10_F 16 -3.881 0.001 0.217 -0.114 -7.823 1 19 E 17 F 9 -0.179 E_DG17:DC9_F 17 -12.168 -0.060 0.015 -0.210 0.803 1 20 E 18 F 8 -2.482 E_DT18:DA8_F 18 -4.546 0.189 -0.021 -0.302 -3.340 1 20 E 19 F 7 -6.283 E_DA19:DT7_F 19 -8.364 -0.075 -0.266 -0.246 -5.417 1 20 E 20 F 6 1.701 E_DT20:DA6_F 20 -9.797 0.023 0.426 -0.109 -15.551 1 20 E 21 F 5 -2.313 E_DT21:DA5_F 21 -20.558 -0.104 0.406 -0.128 -10.092 1 20 E 22 F 4 -4.572 E_DT22:DA4_F 22 -14.798 0.040 0.284 -0.178 -4.878 1 20 E 23 F 3 3.574 E_DT23:DA3_F 23 -14.382 -0.323 0.098 0.063 -3.639 1 20 E 24 F 2 2.010 E_DA24:DT2_F 24 -11.491 0.784 -0.449 -0.389 2.957 1 E 25 F 1 30.687 E_DT25:DA1_F 25 -10.643 0.152 0.109 0.623 5.643 1 20 G 1 H 25 0.947 G_DT1:DA25_H 26 -19.249 0.306 0.173 -0.196 2.611 1 20 G 2 H 24 -8.067 G_DA2:DT24_H 27 -17.093 1.144 0.555 0.164 9.560 1 20 G 3 H 23 7.263 G_DA3:DT23_H 28 -11.307 0.011 0.096 0.147 -0.309 1 20 G 4 H 22 -1.825 G_DA4:DT22_H 29 -19.143 0.386 0.315 0.366 2.310 1 20 G 5 H 21 -4.144 G_DA5:DT21_H 30 -9.796 0.675 0.163 -0.134 -0.995 1 20 G 6 H 20 1.318 G_DA6:DT20_H 31 -10.956 -0.035 0.433 -0.155 2.242 1 20 G 7 H 19 -1.156 G_DT7:DA19_H 32 -12.036 -0.333 -0.108 0.062 8.296 1 20 G 8 H 18 -2.499 G_DA8:DT18_H 33 5.329 0.120 0.349 -0.187 11.928 1 19 G 9 H 17 -0.532 G_DC9:DG17_H 34 3.999 0.511 -0.080 0.214 6.134 1 20 G 10 H 16 -2.678 G_DT10:DA16_H 35 -19.995 -0.273 -0.268 -0.249 -7.946 1 19 G 11 H 15 1.376 G_DC11:DG15_H 36 -9.928 -0.522 0.343 0.281 -9.835 1 19 G 12 H 14 4.527 G_DC12:DG14_H 37 -6.945 -0.204 -0.254 -0.344 -6.378 1 20 G 13 H 13 -4.702 G_DA13:DT13_H 38 -17.242 0.824 0.077 0.001 -0.330 1 20 G 14 H 12 -1.232 G_DT14:DA12_H 39 -5.610 0.117 -0.119 -0.448 6.992 1 20 G 15 H 11 -7.199 G_DA15:DT11_H 40 -13.520 0.309 0.469 -0.180 -3.621 1 19 G 16 H 10 2.801 G_DG16:DC10_H 41 -3.271 -0.272 -0.248 -0.146 -5.694 1 19 G 17 H 9 2.787 G_DG17:DC9_H 42 -4.729 0.015 0.199 -0.025 4.527 1 20 G 18 H 8 3.618 G_DT18:DA8_H 43 -1.522 -0.529 0.172 -0.159 1.267 1 20 G 19 H 7 -2.936 G_DA19:DT7_H 44 -14.087 -0.128 -0.091 -0.201 1.273 G 20 H 6 11.031 G_DT20:DA6_H 45 -16.301 0.248 0.353 0.361 0.363 1 20 G 21 H 5 3.031 G_DT21:DA5_H 46 -11.216 -0.067 -0.036 -0.034 -0.558 1 20 G 22 H 4 4.580 G_DT22:DA4_H 47 -14.067 -0.311 -0.118 -0.054 -1.328 1 20 G 23 H 3 5.481 G_DT23:DA3_H 48 -23.465 0.001 -0.075 0.136 -15.615 1 20 G 24 H 2 9.613 G_DA24:DT2_H 49 -11.871 0.487 -0.344 -0.161 -5.283 1 G 25 H 1 18.161 G_DT25:DA1_H 50 -3.751 0.126 0.955 0.087 3.299 43.784 E E 1 2 0.649 F F 25 24 3.360 0.482 -0.242 1.351 EE_DT1DA2:DT24DA25_FF 1 6.942 -9.345 43.254 1.764 1.002 2.815 40.173 E E 2 3 1.703 F F 24 23 3.019 1.157 0.511 0.896 EE_DA2DA3:DT23DT24_FF 2 -10.573 15.563 38.796 1.185 -1.836 3.174 33.535 E E 3 4 -0.079 F F 23 22 3.225 -0.046 -0.452 -0.755 EE_DA3DA4:DT22DT23_FF 3 3.047 -5.288 33.400 -1.302 1.274 3.403 37.877 E E 4 5 -3.729 F F 22 21 3.383 -2.419 -0.189 -0.427 EE_DA4DA5:DT21DT22_FF 4 -0.003 0.005 37.803 -0.336 0.291 3.418 36.251 E E 5 6 -8.251 F F 21 20 3.384 -5.093 -0.164 -0.634 EE_DA5DA6:DT20DT21_FF 5 -6.251 10.126 35.372 -0.266 -0.659 3.416 31.965 E E 6 7 -6.462 F F 20 19 3.259 -3.551 -0.751 -1.407 EE_DA6DT7:DA19DT20_FF 6 -1.122 2.042 31.753 -1.897 1.156 3.008 39.298 E E 7 8 -2.146 F F 19 18 2.997 -1.443 -0.181 -0.410 EE_DT7DA8:DT18DA19_FF 7 0.211 -0.314 39.272 -0.452 0.292 3.399 33.445 E E 8 9 -0.963 F F 18 17 3.343 -0.554 1.352 -0.465 EE_DA8DC9:DG17DT18_FF 8 1.329 -2.310 33.415 -0.713 -2.124 2.958 33.299 E E 9 10 8.840 F F 17 16 3.258 5.005 -0.138 -1.039 EE_DC9DT10:DA16DG17_FF 9 7.592 -13.410 32.067 -2.621 1.466 3.399 34.248 E E 10 11 3.329 F F 16 15 3.429 1.960 0.212 -0.451 EE_DT10DC11:DG15DA16_FF 10 -0.013 0.021 34.193 -1.088 -0.363 3.353 39.941 E E 11 12 -5.109 F F 15 14 3.375 -3.478 0.579 0.649 EE_DC11DC12:DG14DG15_FF 11 4.800 -7.051 39.517 1.364 -0.276 3.371 40.230 E E 12 13 -2.206 F F 14 13 3.343 -1.516 -1.081 1.134 EE_DC12DA13:DT13DG14_FF 12 -3.130 4.557 40.085 1.826 1.207 3.281 36.894 E E 13 14 -7.067 F F 13 12 3.383 -4.462 0.916 0.637 EE_DA13DT14:DA12DT13_FF 13 -0.183 0.290 36.632 1.624 -1.473 2.782 41.435 E E 14 15 -15.377 F F 12 11 2.994 -10.749 -1.139 0.844 EE_DT14DA15:DT11DA12_FF 14 -4.021 5.753 39.881 2.228 1.224 3.409 35.742 E E 15 16 7.623 F F 11 10 3.542 4.666 0.850 -0.805 EE_DA15DG16:DC10DT11_FF 15 -0.128 0.209 35.446 -2.030 -1.405 3.640 36.462 E E 16 17 -0.424 F F 10 9 3.635 -0.265 -0.308 -0.818 EE_DG16DG17:DC9DC10_FF 16 0.008 -0.012 36.461 -1.266 0.493 3.048 35.108 E E 17 18 -3.476 F F 9 8 3.029 -2.096 -0.627 -0.521 EE_DG17DT18:DA8DC9_FF 17 0.363 -0.602 35.046 -0.572 1.091 3.249 32.130 E E 18 19 13.290 F F 8 7 3.522 7.284 -0.197 -0.690 EE_DT18DA19:DT7DA8_FF 18 2.984 -5.444 31.176 -2.618 0.917 3.099 31.287 E E 19 20 1.650 F F 7 6 3.261 0.887 0.871 -0.947 EE_DA19DT20:DA6DT7_FF 19 -3.999 7.435 31.024 -1.921 -2.353 3.483 38.157 E E 20 21 -7.506 F F 6 5 3.452 -4.889 -0.138 -0.630 EE_DT20DT21:DA5DA6_FF 20 3.063 -4.703 37.735 -0.305 0.623 3.051 41.057 E E 21 22 -6.777 F F 5 4 3.038 -4.744 -0.103 -0.290 EE_DT21DT22:DA4DA5_FF 21 -0.051 0.073 40.794 0.068 0.141 3.047 35.402 E E 22 23 1.101 F F 4 3 3.038 0.670 0.363 -0.201 EE_DT22DT23:DA3DA4_FF 22 1.761 -2.897 35.353 -0.422 -0.357 3.259 42.353 E E 23 24 -5.697 F F 3 2 3.399 -4.095 0.207 1.294 EE_DT23DA24:DT2DA3_FF 23 6.510 -9.056 41.680 2.219 0.395 2.912 29.691 E E 24 25 12.293 F F 2 1 3.013 6.252 1.265 0.135 EE_DA24DT25:DA1DT2_FF 24 -1.475 2.899 29.004 -0.941 -2.753 3.370 45.667 G G 1 2 -5.368 H H 25 24 3.455 -4.158 -0.357 1.020 GG_DT1DA2:DT24DA25_HH 25 -3.185 4.112 45.382 1.694 0.169 3.320 34.793 G G 2 3 -3.492 H H 24 23 3.266 -2.082 0.989 0.590 GG_DA2DA3:DT23DT24_HH 26 4.243 -7.117 34.481 1.308 -0.999 3.594 35.115 G G 3 4 -3.456 H H 23 22 3.551 -2.082 -0.586 -0.278 GG_DA3DA4:DT22DT23_HH 27 -2.627 4.361 34.960 -0.121 0.542 3.109 41.796 G G 4 5 -2.138 H H 22 21 3.107 -1.524 -0.390 -0.591 GG_DA4DA5:DT21DT22_HH 28 1.636 -2.294 41.738 -0.677 0.709 3.291 35.321 G G 5 6 -7.286 H H 21 20 3.235 -4.404 0.243 -0.956 GG_DA5DA6:DT20DT21_HH 29 -3.363 5.564 34.897 -0.922 -0.899 3.216 32.373 G G 6 7 -5.455 H H 20 19 3.183 -3.033 -0.445 -1.088 GG_DA6DT7:DA19DT20_HH 30 2.996 -5.388 32.099 -1.426 1.318 3.105 38.207 G G 7 8 5.346 H H 19 18 3.125 3.484 -0.386 -0.356 GG_DT7DA8:DT18DA19_HH 31 -5.396 8.281 37.683 -0.964 -0.062 3.370 30.578 G G 8 9 -5.883 H H 18 17 3.274 -3.096 0.891 -0.717 GG_DA8DC9:DG17DT18_HH 32 1.599 -3.039 30.383 -0.735 -1.366 3.447 35.737 G G 9 10 -5.550 H H 17 16 3.351 -3.375 0.451 -0.996 GG_DC9DT10:DA16DG17_HH 33 7.866 -12.936 34.729 -1.109 0.462 3.297 33.939 G G 10 11 15.700 H H 16 15 3.594 9.056 0.478 -0.738 GG_DT10DC11:DG15DA16_HH 34 1.549 -2.685 32.707 -2.823 -0.552 3.407 42.110 G G 11 12 -0.910 H H 15 14 3.361 -0.651 0.611 0.522 GG_DC11DC12:DG14DG15_HH 35 6.965 -9.735 41.551 0.796 -0.101 3.356 44.885 G G 12 13 -3.907 H H 14 13 3.321 -2.971 -1.268 1.669 GG_DC12DA13:DT13DG14_HH 36 -6.694 8.803 44.314 2.463 1.038 3.087 31.502 G G 13 14 -7.581 H H 13 12 3.136 -4.101 0.473 0.395 GG_DA13DT14:DA12DT13_HH 37 2.440 -4.510 31.148 1.459 -0.436 3.074 45.023 G G 14 15 -7.722 H H 12 11 3.166 -5.868 -0.622 1.031 GG_DT14DA15:DT11DA12_HH 38 -8.194 10.784 43.937 1.856 0.099 3.558 34.880 G G 15 16 4.693 H H 11 10 3.560 2.808 0.783 -0.541 GG_DA15DG16:DC10DT11_HH 39 2.833 -4.736 34.658 -1.366 -0.838 3.214 37.620 G G 16 17 4.577 H H 10 9 3.232 2.938 -0.485 -0.587 GG_DG16DG17:DC9DC10_HH 40 -5.792 9.024 37.075 -1.290 0.004 3.070 28.449 G G 17 18 1.359 H H 9 8 3.066 0.667 -0.564 -0.763 GG_DG17DT18:DA8DC9_HH 41 -1.332 2.711 28.411 -1.697 0.861 3.450 36.852 G G 18 19 -0.118 H H 8 7 3.492 -0.074 -0.045 -0.262 GG_DT18DA19:DT7DA8_HH 42 5.458 -8.664 36.459 -0.404 0.862 2.966 32.377 G G 19 20 6.394 H H 7 6 3.108 3.558 1.029 -0.823 GG_DA19DT20:DA6DT7_HH 43 -1.114 2.003 32.168 -2.060 -2.028 3.229 39.653 G G 20 21 -16.676 H H 6 5 3.347 -11.143 -0.053 -0.138 GG_DT20DT21:DA5DA6_HH 44 4.896 -7.326 37.810 1.139 0.667 3.228 38.872 G G 21 22 3.156 H H 5 4 3.202 2.097 0.615 -0.180 GG_DT21DT22:DA4DA5_HH 45 3.314 -4.987 38.681 -0.521 -0.528 3.146 37.268 G G 22 23 0.836 H H 4 3 3.142 0.534 0.190 0.019 GG_DT22DT23:DA3DA4_HH 46 0.917 -1.435 37.253 -0.038 -0.180 3.740 37.476 G G 23 24 12.485 H H 3 2 3.636 7.956 0.311 0.820 GG_DT23DA24:DT2DA3_HH 47 2.977 -4.671 36.535 0.085 -0.038 2.827 33.875 G G 24 25 6.540 H H 2 1 3.176 3.747 0.533 -0.314 GG_DA24DT25:DA1DT2_HH 48 -10.187 17.780 32.137 -1.108 -2.461 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Database references Refinement description Data collection Database references Refinement description 1 0 2013-07-10 1 1 2013-10-02 1 2 2014-01-15 1 3 2017-11-15 1 4 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details BenM DNA Binding Domain Crystal Structure of BenM_DBD/catB site 1 DNA Complex RCSB Y RCSB 2012-12-19 REL REL HOH water Synthetic DNA purchased from IDT sample Synthetic DNA purchased from IDT sample 3M1E PDB entry 3M1E PDB experimental model HOH 1 4 HOH HOH 101 A HOH 2 4 HOH HOH 102 A HOH 3 4 HOH HOH 103 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A LEU 3 n 3 LEU 3 A ARG 4 n 4 ARG 4 A HIS 5 n 5 HIS 5 A LEU 6 n 6 LEU 6 A ARG 7 n 7 ARG 7 A TYR 8 n 8 TYR 8 A PHE 9 n 9 PHE 9 A VAL 10 n 10 VAL 10 A ALA 11 n 11 ALA 11 A VAL 12 n 12 VAL 12 A VAL 13 n 13 VAL 13 A GLU 14 n 14 GLU 14 A GLU 15 n 15 GLU 15 A GLN 16 n 16 GLN 16 A SER 17 n 17 SER 17 A PHE 18 n 18 PHE 18 A THR 19 n 19 THR 19 A LYS 20 n 20 LYS 20 A ALA 21 n 21 ALA 21 A ALA 22 n 22 ALA 22 A ASP 23 n 23 ASP 23 A LYS 24 n 24 LYS 24 A LEU 25 n 25 LEU 25 A CYS 26 n 26 CYS 26 A ILE 27 n 27 ILE 27 A ALA 28 n 28 ALA 28 A GLN 29 n 29 GLN 29 A PRO 30 n 30 PRO 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A SER 33 n 33 SER 33 A ARG 34 n 34 ARG 34 A GLN 35 n 35 GLN 35 A ILE 36 n 36 ILE 36 A GLN 37 n 37 GLN 37 A ASN 38 n 38 ASN 38 A LEU 39 n 39 LEU 39 A GLU 40 n 40 GLU 40 A GLU 41 n 41 GLU 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A GLY 44 n 44 GLY 44 A ILE 45 n 45 ILE 45 A GLN 46 n 46 GLN 46 A LEU 47 n 47 LEU 47 A LEU 48 n 48 LEU 48 A GLU 49 n 49 GLU 49 A ARG 50 n 50 ARG 50 A GLY 51 n 51 GLY 51 A SER 52 n 52 SER 52 A ARG 53 n 53 ARG 53 A PRO 54 n 54 PRO 54 A VAL 55 n 55 VAL 55 A LYS 56 n 56 LYS 56 A THR 57 n 57 THR 57 A THR 58 n 58 THR 58 A PRO 59 n 59 PRO 59 A GLU 60 n 60 GLU 60 A GLY 61 n 61 GLY 61 A HIS 62 n 62 HIS 62 A PHE 63 n 63 PHE 63 A PHE 64 n 64 PHE 64 A TYR 65 n 65 TYR 65 A GLN 66 n 66 GLN 66 A TYR 67 n 67 TYR 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A LYS 70 n 70 LYS 70 A LEU 71 n 71 LEU 71 A LEU 72 n 72 LEU 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A VAL 75 n 75 VAL 75 A ASP 76 n 76 ASP 76 A GLN 77 n 77 GLN 77 A MET 78 n 78 MET 78 A VAL 79 n 79 VAL 79 A SER 80 n 80 SER 80 A MET 81 n 81 MET 81 A THR 82 n 82 THR 82 A LYS 83 n 83 LYS 83 A ARG 84 n 84 ARG 84 A ILE 85 n 85 ILE 85 A ALA 86 n 86 ALA 86 A SER 87 n 87 SER 87 A GLY 88 n 88 GLY 88 A HIS 89 n 89 HIS 89 A n 90 90 A n 91 91 A n 92 92 A n 93 93 A n 94 94 A MET 1 n 1 MET 1 B GLU 2 n 2 GLU 2 B LEU 3 n 3 LEU 3 B ARG 4 n 4 ARG 4 B HIS 5 n 5 HIS 5 B LEU 6 n 6 LEU 6 B ARG 7 n 7 ARG 7 B TYR 8 n 8 TYR 8 B PHE 9 n 9 PHE 9 B VAL 10 n 10 VAL 10 B ALA 11 n 11 ALA 11 B VAL 12 n 12 VAL 12 B VAL 13 n 13 VAL 13 B GLU 14 n 14 GLU 14 B GLU 15 n 15 GLU 15 B GLN 16 n 16 GLN 16 B SER 17 n 17 SER 17 B PHE 18 n 18 PHE 18 B THR 19 n 19 THR 19 B LYS 20 n 20 LYS 20 B ALA 21 n 21 ALA 21 B ALA 22 n 22 ALA 22 B ASP 23 n 23 ASP 23 B LYS 24 n 24 LYS 24 B LEU 25 n 25 LEU 25 B CYS 26 n 26 CYS 26 B ILE 27 n 27 ILE 27 B ALA 28 n 28 ALA 28 B GLN 29 n 29 GLN 29 B PRO 30 n 30 PRO 30 B PRO 31 n 31 PRO 31 B LEU 32 n 32 LEU 32 B SER 33 n 33 SER 33 B ARG 34 n 34 ARG 34 B GLN 35 n 35 GLN 35 B ILE 36 n 36 ILE 36 B GLN 37 n 37 GLN 37 B ASN 38 n 38 ASN 38 B LEU 39 n 39 LEU 39 B GLU 40 n 40 GLU 40 B GLU 41 n 41 GLU 41 B GLU 42 n 42 GLU 42 B LEU 43 n 43 LEU 43 B GLY 44 n 44 GLY 44 B ILE 45 n 45 ILE 45 B GLN 46 n 46 GLN 46 B LEU 47 n 47 LEU 47 B LEU 48 n 48 LEU 48 B GLU 49 n 49 GLU 49 B ARG 50 n 50 ARG 50 B GLY 51 n 51 GLY 51 B SER 52 n 52 SER 52 B ARG 53 n 53 ARG 53 B PRO 54 n 54 PRO 54 B VAL 55 n 55 VAL 55 B LYS 56 n 56 LYS 56 B THR 57 n 57 THR 57 B THR 58 n 58 THR 58 B PRO 59 n 59 PRO 59 B GLU 60 n 60 GLU 60 B GLY 61 n 61 GLY 61 B HIS 62 n 62 HIS 62 B PHE 63 n 63 PHE 63 B PHE 64 n 64 PHE 64 B TYR 65 n 65 TYR 65 B GLN 66 n 66 GLN 66 B TYR 67 n 67 TYR 67 B ALA 68 n 68 ALA 68 B ILE 69 n 69 ILE 69 B LYS 70 n 70 LYS 70 B LEU 71 n 71 LEU 71 B LEU 72 n 72 LEU 72 B SER 73 n 73 SER 73 B ASN 74 n 74 ASN 74 B VAL 75 n 75 VAL 75 B ASP 76 n 76 ASP 76 B GLN 77 n 77 GLN 77 B MET 78 n 78 MET 78 B VAL 79 n 79 VAL 79 B SER 80 n 80 SER 80 B MET 81 n 81 MET 81 B THR 82 n 82 THR 82 B LYS 83 n 83 LYS 83 B ARG 84 n 84 ARG 84 B ILE 85 n 85 ILE 85 B ALA 86 n 86 ALA 86 B SER 87 n 87 SER 87 B GLY 88 n 88 GLY 88 B HIS 89 n 89 HIS 89 B HIS 90 n 90 HIS 90 B n 91 91 B n 92 92 B n 93 93 B n 94 94 B MET 1 n 1 MET 1 C GLU 2 n 2 GLU 2 C LEU 3 n 3 LEU 3 C ARG 4 n 4 ARG 4 C HIS 5 n 5 HIS 5 C LEU 6 n 6 LEU 6 C ARG 7 n 7 ARG 7 C TYR 8 n 8 TYR 8 C PHE 9 n 9 PHE 9 C VAL 10 n 10 VAL 10 C ALA 11 n 11 ALA 11 C VAL 12 n 12 VAL 12 C VAL 13 n 13 VAL 13 C GLU 14 n 14 GLU 14 C GLU 15 n 15 GLU 15 C GLN 16 n 16 GLN 16 C SER 17 n 17 SER 17 C PHE 18 n 18 PHE 18 C THR 19 n 19 THR 19 C LYS 20 n 20 LYS 20 C ALA 21 n 21 ALA 21 C ALA 22 n 22 ALA 22 C ASP 23 n 23 ASP 23 C LYS 24 n 24 LYS 24 C LEU 25 n 25 LEU 25 C CYS 26 n 26 CYS 26 C ILE 27 n 27 ILE 27 C ALA 28 n 28 ALA 28 C GLN 29 n 29 GLN 29 C PRO 30 n 30 PRO 30 C PRO 31 n 31 PRO 31 C LEU 32 n 32 LEU 32 C SER 33 n 33 SER 33 C ARG 34 n 34 ARG 34 C GLN 35 n 35 GLN 35 C ILE 36 n 36 ILE 36 C GLN 37 n 37 GLN 37 C ASN 38 n 38 ASN 38 C LEU 39 n 39 LEU 39 C GLU 40 n 40 GLU 40 C GLU 41 n 41 GLU 41 C GLU 42 n 42 GLU 42 C LEU 43 n 43 LEU 43 C GLY 44 n 44 GLY 44 C ILE 45 n 45 ILE 45 C GLN 46 n 46 GLN 46 C LEU 47 n 47 LEU 47 C LEU 48 n 48 LEU 48 C GLU 49 n 49 GLU 49 C ARG 50 n 50 ARG 50 C GLY 51 n 51 GLY 51 C SER 52 n 52 SER 52 C ARG 53 n 53 ARG 53 C PRO 54 n 54 PRO 54 C VAL 55 n 55 VAL 55 C LYS 56 n 56 LYS 56 C THR 57 n 57 THR 57 C THR 58 n 58 THR 58 C PRO 59 n 59 PRO 59 C GLU 60 n 60 GLU 60 C GLY 61 n 61 GLY 61 C HIS 62 n 62 HIS 62 C PHE 63 n 63 PHE 63 C PHE 64 n 64 PHE 64 C TYR 65 n 65 TYR 65 C GLN 66 n 66 GLN 66 C TYR 67 n 67 TYR 67 C ALA 68 n 68 ALA 68 C ILE 69 n 69 ILE 69 C LYS 70 n 70 LYS 70 C LEU 71 n 71 LEU 71 C LEU 72 n 72 LEU 72 C SER 73 n 73 SER 73 C ASN 74 n 74 ASN 74 C VAL 75 n 75 VAL 75 C ASP 76 n 76 ASP 76 C GLN 77 n 77 GLN 77 C MET 78 n 78 MET 78 C VAL 79 n 79 VAL 79 C SER 80 n 80 SER 80 C MET 81 n 81 MET 81 C THR 82 n 82 THR 82 C LYS 83 n 83 LYS 83 C ARG 84 n 84 ARG 84 C ILE 85 n 85 ILE 85 C ALA 86 n 86 ALA 86 C n 87 87 C n 88 88 C n 89 89 C n 90 90 C n 91 91 C n 92 92 C n 93 93 C n 94 94 C MET 1 n 1 MET 1 D GLU 2 n 2 GLU 2 D LEU 3 n 3 LEU 3 D ARG 4 n 4 ARG 4 D HIS 5 n 5 HIS 5 D LEU 6 n 6 LEU 6 D ARG 7 n 7 ARG 7 D TYR 8 n 8 TYR 8 D PHE 9 n 9 PHE 9 D VAL 10 n 10 VAL 10 D ALA 11 n 11 ALA 11 D VAL 12 n 12 VAL 12 D VAL 13 n 13 VAL 13 D GLU 14 n 14 GLU 14 D GLU 15 n 15 GLU 15 D GLN 16 n 16 GLN 16 D SER 17 n 17 SER 17 D PHE 18 n 18 PHE 18 D THR 19 n 19 THR 19 D LYS 20 n 20 LYS 20 D ALA 21 n 21 ALA 21 D ALA 22 n 22 ALA 22 D ASP 23 n 23 ASP 23 D LYS 24 n 24 LYS 24 D LEU 25 n 25 LEU 25 D CYS 26 n 26 CYS 26 D ILE 27 n 27 ILE 27 D ALA 28 n 28 ALA 28 D GLN 29 n 29 GLN 29 D PRO 30 n 30 PRO 30 D PRO 31 n 31 PRO 31 D LEU 32 n 32 LEU 32 D SER 33 n 33 SER 33 D ARG 34 n 34 ARG 34 D GLN 35 n 35 GLN 35 D ILE 36 n 36 ILE 36 D GLN 37 n 37 GLN 37 D ASN 38 n 38 ASN 38 D LEU 39 n 39 LEU 39 D GLU 40 n 40 GLU 40 D GLU 41 n 41 GLU 41 D GLU 42 n 42 GLU 42 D LEU 43 n 43 LEU 43 D GLY 44 n 44 GLY 44 D ILE 45 n 45 ILE 45 D GLN 46 n 46 GLN 46 D LEU 47 n 47 LEU 47 D LEU 48 n 48 LEU 48 D GLU 49 n 49 GLU 49 D ARG 50 n 50 ARG 50 D GLY 51 n 51 GLY 51 D SER 52 n 52 SER 52 D ARG 53 n 53 ARG 53 D PRO 54 n 54 PRO 54 D VAL 55 n 55 VAL 55 D LYS 56 n 56 LYS 56 D THR 57 n 57 THR 57 D THR 58 n 58 THR 58 D PRO 59 n 59 PRO 59 D GLU 60 n 60 GLU 60 D GLY 61 n 61 GLY 61 D HIS 62 n 62 HIS 62 D PHE 63 n 63 PHE 63 D PHE 64 n 64 PHE 64 D TYR 65 n 65 TYR 65 D GLN 66 n 66 GLN 66 D TYR 67 n 67 TYR 67 D ALA 68 n 68 ALA 68 D ILE 69 n 69 ILE 69 D LYS 70 n 70 LYS 70 D LEU 71 n 71 LEU 71 D LEU 72 n 72 LEU 72 D SER 73 n 73 SER 73 D ASN 74 n 74 ASN 74 D VAL 75 n 75 VAL 75 D ASP 76 n 76 ASP 76 D GLN 77 n 77 GLN 77 D MET 78 n 78 MET 78 D VAL 79 n 79 VAL 79 D SER 80 n 80 SER 80 D MET 81 n 81 MET 81 D THR 82 n 82 THR 82 D LYS 83 n 83 LYS 83 D ARG 84 n 84 ARG 84 D ILE 85 n 85 ILE 85 D ALA 86 n 86 ALA 86 D SER 87 n 87 SER 87 D GLY 88 n 88 GLY 88 D HIS 89 n 89 HIS 89 D HIS 90 n 90 HIS 90 D n 91 91 D n 92 92 D n 93 93 D n 94 94 D DT 1 n 1 DT 1 E DA 2 n 2 DA 2 E DA 3 n 3 DA 3 E DA 4 n 4 DA 4 E DA 5 n 5 DA 5 E DA 6 n 6 DA 6 E DT 7 n 7 DT 7 E DA 8 n 8 DA 8 E DC 9 n 9 DC 9 E DT 10 n 10 DT 10 E DC 11 n 11 DC 11 E DC 12 n 12 DC 12 E DA 13 n 13 DA 13 E DT 14 n 14 DT 14 E DA 15 n 15 DA 15 E DG 16 n 16 DG 16 E DG 17 n 17 DG 17 E DT 18 n 18 DT 18 E DA 19 n 19 DA 19 E DT 20 n 20 DT 20 E DT 21 n 21 DT 21 E DT 22 n 22 DT 22 E DT 23 n 23 DT 23 E DA 24 n 24 DA 24 E DT 25 n 25 DT 25 E DA 1 n 1 DA 1 F DT 2 n 2 DT 2 F DA 3 n 3 DA 3 F DA 4 n 4 DA 4 F DA 5 n 5 DA 5 F DA 6 n 6 DA 6 F DT 7 n 7 DT 7 F DA 8 n 8 DA 8 F DC 9 n 9 DC 9 F DC 10 n 10 DC 10 F DT 11 n 11 DT 11 F DA 12 n 12 DA 12 F DT 13 n 13 DT 13 F DG 14 n 14 DG 14 F DG 15 n 15 DG 15 F DA 16 n 16 DA 16 F DG 17 n 17 DG 17 F DT 18 n 18 DT 18 F DA 19 n 19 DA 19 F DT 20 n 20 DT 20 F DT 21 n 21 DT 21 F DT 22 n 22 DT 22 F DT 23 n 23 DT 23 F DT 24 n 24 DT 24 F DA 25 n 25 DA 25 F DT 1 n 1 DT 1 G DA 2 n 2 DA 2 G DA 3 n 3 DA 3 G DA 4 n 4 DA 4 G DA 5 n 5 DA 5 G DA 6 n 6 DA 6 G DT 7 n 7 DT 7 G DA 8 n 8 DA 8 G DC 9 n 9 DC 9 G DT 10 n 10 DT 10 G DC 11 n 11 DC 11 G DC 12 n 12 DC 12 G DA 13 n 13 DA 13 G DT 14 n 14 DT 14 G DA 15 n 15 DA 15 G DG 16 n 16 DG 16 G DG 17 n 17 DG 17 G DT 18 n 18 DT 18 G DA 19 n 19 DA 19 G DT 20 n 20 DT 20 G DT 21 n 21 DT 21 G DT 22 n 22 DT 22 G DT 23 n 23 DT 23 G DA 24 n 24 DA 24 G DT 25 n 25 DT 25 G DA 1 n 1 DA 1 H DT 2 n 2 DT 2 H DA 3 n 3 DA 3 H DA 4 n 4 DA 4 H DA 5 n 5 DA 5 H DA 6 n 6 DA 6 H DT 7 n 7 DT 7 H DA 8 n 8 DA 8 H DC 9 n 9 DC 9 H DC 10 n 10 DC 10 H DT 11 n 11 DT 11 H DA 12 n 12 DA 12 H DT 13 n 13 DT 13 H DG 14 n 14 DG 14 H DG 15 n 15 DG 15 H DA 16 n 16 DA 16 H DG 17 n 17 DG 17 H DT 18 n 18 DT 18 H DA 19 n 19 DA 19 H DT 20 n 20 DT 20 H DT 21 n 21 DT 21 H DT 22 n 22 DT 22 H DT 23 n 23 DT 23 H DT 24 n 24 DT 24 H DA 25 n 25 DA 25 H 5.6548 -2.2208 1.3676 6.3136 3.4975 7.3772 0.1346 0.2736 -0.0773 -0.0559 -0.1205 0.5428 0.5104 -0.2462 -0.0141 0.1274 -0.0134 -0.1079 0.1280 -0.0097 0.1438 refined 22.0757 -53.1580 -8.0770 X-RAY DIFFRACTION 5.0011 -1.9164 0.4835 2.5041 -1.3762 2.1362 -0.4121 -0.4847 -0.0129 0.1891 0.2870 0.1694 0.6962 -0.1413 0.1251 0.5104 0.0049 0.0540 0.2858 -0.0210 0.3160 refined 20.0832 -51.1380 3.1155 X-RAY DIFFRACTION 4.3146 -1.8395 -2.9097 7.1268 0.9846 4.6060 0.4181 -0.0779 0.7229 -0.7317 -0.1181 -0.2819 -0.4149 -0.1062 -0.3000 0.1234 0.0628 -0.0036 0.2476 -0.0846 0.5123 refined 21.4248 -28.4645 -2.1059 X-RAY DIFFRACTION 17.1778 20.4123 -7.2593 27.5226 -1.1983 20.1542 0.1092 1.2134 1.4981 -0.3926 1.5980 1.4001 -1.7283 0.0414 -1.7072 0.6512 0.2131 0.1537 0.6629 0.0041 0.9066 refined 13.0842 -21.7004 4.0527 X-RAY DIFFRACTION 10.1158 -7.2540 -0.2884 10.0513 1.2019 1.2507 -0.2845 -1.2468 0.2127 0.3730 0.4606 -0.1287 0.0377 -0.0189 -0.1762 0.0339 0.0164 -0.0546 0.3225 -0.0534 0.1668 refined 25.9942 -42.4278 8.8393 X-RAY DIFFRACTION 8.8201 2.8689 0.9814 7.7750 -2.0901 8.5838 -0.3241 0.5027 -0.4233 0.1101 0.4842 -0.6975 0.0717 0.5404 -0.1601 0.0457 0.0834 -0.0290 0.3543 -0.1412 0.0954 refined 57.8006 -47.3098 5.9597 X-RAY DIFFRACTION 29.2203 -3.2151 20.5968 8.0909 -0.3718 15.1781 0.6490 0.3188 0.0102 0.5422 -0.5473 0.3800 0.6984 0.1052 -0.1018 0.1329 0.0599 -0.0583 0.2912 -0.0413 0.2125 refined 49.1669 -48.2990 9.9322 X-RAY DIFFRACTION 6.5113 -2.0734 -0.8461 9.0758 -2.9276 6.4641 -0.2288 -0.4727 -0.8647 0.1320 0.9183 0.6521 1.2628 0.1902 -0.6896 0.5708 0.1149 -0.1244 0.5494 -0.1779 0.5313 refined 51.2661 -58.7667 4.0548 X-RAY DIFFRACTION 5.4622 9.5520 -0.4100 28.2262 -2.7814 4.5222 -0.8105 1.2331 0.5073 -1.9384 0.9095 -0.5539 -0.2760 0.6981 -0.0990 0.1955 -0.1578 0.0153 0.9326 0.0757 0.3036 refined 56.9484 -39.9588 -7.4953 X-RAY DIFFRACTION 0.7027 -0.4445 -1.9733 9.5933 1.3020 9.6626 -0.2814 0.2394 0.2766 -0.1331 0.2221 0.8538 -0.8043 -0.3966 0.0594 0.6246 -0.1648 -0.4358 0.3540 0.3015 0.5925 refined 44.5063 -24.8723 0.2092 X-RAY DIFFRACTION 4.7765 -0.3686 -5.7306 6.3863 3.6664 8.7725 0.1107 0.1564 0.3310 -0.5353 0.1209 -0.3887 -0.7845 0.1388 -0.2316 0.6208 -0.2045 -0.3734 0.5232 0.4051 0.7668 refined 52.1342 -18.4126 0.3128 X-RAY DIFFRACTION 3.8009 7.7951 -1.1570 24.5688 -3.4296 2.1446 -1.1184 1.0926 0.0013 -2.2654 1.1371 -0.3201 -0.2078 0.2952 -0.0186 0.7422 -0.3285 -0.0664 0.7851 0.0203 0.2981 refined 47.0149 -38.5346 -9.3561 X-RAY DIFFRACTION 5.4256 -3.6571 -1.8155 12.5870 -0.1902 9.5716 -0.1483 -0.1473 0.6199 0.2861 -0.0032 -0.0045 -0.8897 0.1877 0.1514 0.8434 0.2473 0.1529 0.2151 -0.0547 0.7959 refined 19.0254 -12.4118 -7.4369 X-RAY DIFFRACTION 2.5039 -0.7781 -0.6486 13.2228 1.2385 2.7913 0.1491 0.3748 -0.0950 -0.8482 -0.3213 -0.6808 -0.1514 -0.3637 0.1722 0.2814 0.0550 -0.0037 0.3592 -0.0139 0.1303 refined 24.9780 -49.4125 -21.3488 X-RAY DIFFRACTION 3.3621 0.2617 -0.8029 5.4351 2.0522 2.0279 0.4176 0.2681 -0.1184 -0.1933 -0.5094 -0.3324 -0.1392 -0.4688 0.0918 0.2857 0.0691 -0.0849 0.3167 -0.0020 0.1330 refined 24.1297 -50.3686 -20.4227 X-RAY DIFFRACTION 11.3702 -5.3841 -7.0740 15.3354 7.4846 11.8293 0.2599 0.1884 0.8050 -0.9320 -0.4334 0.3605 -0.9713 -0.5205 0.1735 0.7851 0.1293 0.0475 0.2050 0.0583 0.8163 refined 18.2789 -12.0365 -10.0309 X-RAY DIFFRACTION 2.7536 -3.2165 1.6174 15.2102 -4.1169 2.7904 -0.3969 0.1640 0.7827 1.5932 -0.0536 0.1542 -1.1681 0.0392 0.4505 0.5817 0.1237 -0.1282 0.2985 0.0125 0.3646 refined 47.8960 -23.6410 15.3403 X-RAY DIFFRACTION 2.7173 2.5150 -1.9609 15.9487 3.8068 4.2486 -0.4689 -0.3573 -0.9735 1.2733 0.0584 -0.3721 1.1844 0.3450 0.4104 0.6165 0.2948 -0.0798 0.2405 0.1191 0.8836 refined 53.0361 -62.9564 20.4606 X-RAY DIFFRACTION 18.2765 -11.8512 -1.5368 18.9925 -8.9001 17.0571 -0.1819 -0.2523 -0.7185 0.6008 -0.3933 -1.0849 1.0303 1.3330 0.5752 0.5028 0.1523 -0.3711 0.2925 -0.0641 0.6681 refined 58.2589 -62.5187 18.6356 X-RAY DIFFRACTION 1.9775 -0.5794 0.9895 8.2254 -3.7442 3.7752 0.0569 0.0578 0.7699 1.1512 -0.6080 0.4718 -1.1836 0.2836 0.5511 0.6438 0.1244 -0.0440 0.2753 -0.0189 0.5088 refined 47.5796 -24.3280 16.0554 X-RAY DIFFRACTION A 1 A 43 X-RAY DIFFRACTION 1 A 44 A 89 X-RAY DIFFRACTION 2 B 1 B 43 X-RAY DIFFRACTION 3 B 44 B 58 X-RAY DIFFRACTION 4 B 59 B 90 X-RAY DIFFRACTION 5 C 1 C 28 X-RAY DIFFRACTION 6 C 29 C 43 X-RAY DIFFRACTION 7 C 44 C 58 X-RAY DIFFRACTION 8 C 59 C 86 X-RAY DIFFRACTION 9 D 1 D 28 X-RAY DIFFRACTION 10 D 29 D 58 X-RAY DIFFRACTION 11 D 59 D 90 X-RAY DIFFRACTION 12 E 1 E 8 X-RAY DIFFRACTION 13 E 9 E 25 X-RAY DIFFRACTION 14 F 1 F 17 X-RAY DIFFRACTION 15 F 18 F 25 X-RAY DIFFRACTION 16 G 1 G 19 X-RAY DIFFRACTION 17 G 20 G 25 X-RAY DIFFRACTION 18 H 1 H 6 X-RAY DIFFRACTION 19 H 7 H 25 X-RAY DIFFRACTION 20 author_and_software_defined_assembly PISA 4 tetrameric author_and_software_defined_assembly PISA 4 tetrameric 7910 -58 16030 8050 -57 15610 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 C N GLU 49 C N GLU 49 C O LYS 56 C O LYS 56 1 A HIS 90 A HIS 90 1 Y 1 A HIS 91 A HIS 91 1 Y 1 A HIS 92 A HIS 92 1 Y 1 A HIS 93 A HIS 93 1 Y 1 A HIS 94 A HIS 94 1 Y 1 B HIS 91 B HIS 91 1 Y 1 B HIS 92 B HIS 92 1 Y 1 B HIS 93 B HIS 93 1 Y 1 B HIS 94 B HIS 94 1 Y 1 C SER 87 C SER 87 1 Y 1 C GLY 88 C GLY 88 1 Y 1 C HIS 89 C HIS 89 1 Y 1 C HIS 90 C HIS 90 1 Y 1 C HIS 91 C HIS 91 1 Y 1 C HIS 92 C HIS 92 1 Y 1 C HIS 93 C HIS 93 1 Y 1 C HIS 94 C HIS 94 1 Y 1 D HIS 91 D HIS 91 1 Y 1 D HIS 92 D HIS 92 1 Y 1 D HIS 93 D HIS 93 1 Y 1 D HIS 94 D HIS 94 1 Y 1 E F H3 N1 DT DA 14 12 1.49 1 G H H3 N1 DT DA 14 12 1.59 1 -9.08 1.50 119.30 110.22 C C C C N CA ARG PRO PRO 53 54 54 Y 1 A SER 17 -169.01 119.17 1 A ALA 86 -70.50 40.54 1 A SER 87 -150.76 43.10 1 B SER 52 -170.05 128.79 1 D CYS 26 76.10 50.65 1 D SER 52 -170.59 114.57 1 D PRO 54 -65.75 91.17 212.280 95.0928 49.940 8.5400 0.0000 0.0000 -2.5400 0.0000 -6.0000 0.9590 0.9260 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: WITH TLS ADDED 0.2452 0.1845 0.1877 3.0000 31.66 820 15998 5.1000 92.5200 1.000 1.000 42.2650 0.3480 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.4370 0.8000 0.8000 1.2000 PDB entry 3M1E MAXIMUM LIKELIHOOD MASK 3.0000 31.66 3 4913 0 2038 2872 0.006 0.016 5209 0.001 0.020 4088 1.143 1.658 7840 0.842 3.001 9412 5.289 5.000 351 33.475 23.688 141 17.601 15.000 552 16.114 15.000 24 0.069 0.200 836 0.006 0.020 4425 0.001 0.020 1003 1 A 1 1417 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.320 0.500 1 A 1 1417 X-RAY DIFFRACTION MEDIUM THERMAL 8.320 2.000 1 B 2 1453 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.330 0.500 1 B 2 1453 X-RAY DIFFRACTION MEDIUM THERMAL 7.490 2.000 1 E 3 795 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.360 0.500 1 E 3 795 X-RAY DIFFRACTION MEDIUM THERMAL 5.560 2.000 1 F 4 798 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.320 0.500 1 F 4 798 X-RAY DIFFRACTION MEDIUM THERMAL 5.440 2.000 0.3740 0.2720 3.0780 61 1039 1100 20 96.3200 99.4 2.900 50.000 4IHT 17712 0.065 3.411 1 21.100 3.700 92.700 0.503 2.900 2.950 875 1.842 1 3.300 92.900 0.396 2.950 3.000 887 1.788 1 4.100 96.000 0.318 3.000 3.060 887 2.035 1 4.100 96.500 0.274 3.060 3.120 925 2.297 1 3.900 96.800 0.214 3.120 3.190 854 2.883 1 3.900 95.000 0.153 3.190 3.270 930 2.872 1 3.900 95.100 0.143 3.270 3.350 847 3.119 1 3.800 95.100 0.131 3.350 3.440 897 3.510 1 3.700 94.300 0.119 3.440 3.540 909 3.796 1 3.800 94.300 0.111 3.540 3.650 868 3.873 1 3.600 94.200 0.090 3.650 3.780 877 4.145 1 3.700 93.000 0.084 3.780 3.940 899 4.120 1 3.500 93.100 0.075 3.940 4.110 865 4.235 1 3.500 94.100 0.064 4.110 4.330 886 4.421 1 3.500 93.200 0.059 4.330 4.600 898 4.196 1 3.500 91.600 0.056 4.600 4.960 879 4.148 1 3.500 91.400 0.055 4.960 5.460 871 4.157 1 3.500 91.000 0.053 5.460 6.240 903 4.198 1 3.600 91.000 0.043 6.240 7.860 893 3.715 1 3.500 88.900 0.039 7.860 50.000 862 3.671 1 3.500 78.600 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0117 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of BenM_DBD/benA site 1 DNA Complex 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N A GLU 2 A GLU 2 HELX_P A GLN 16 A GLN 16 1 1 15 A SER 17 A SER 17 HELX_P A CYS 26 A CYS 26 1 2 10 A ALA 28 A ALA 28 HELX_P A GLY 44 A GLY 44 1 3 17 A THR 58 A THR 58 HELX_P A ALA 86 A ALA 86 1 4 29 B GLU 2 B GLU 2 HELX_P B GLN 16 B GLN 16 1 5 15 B SER 17 B SER 17 HELX_P B LEU 25 B LEU 25 1 6 9 B ALA 28 B ALA 28 HELX_P B GLY 44 B GLY 44 1 7 17 B THR 58 B THR 58 HELX_P B SER 87 B SER 87 1 8 30 C GLU 2 C GLU 2 HELX_P C GLN 16 C GLN 16 1 9 15 C SER 17 C SER 17 HELX_P C CYS 26 C CYS 26 1 10 10 C ALA 28 C ALA 28 HELX_P C GLY 44 C GLY 44 1 11 17 C THR 58 C THR 58 HELX_P C ALA 86 C ALA 86 1 12 29 D GLU 2 D GLU 2 HELX_P D GLN 16 D GLN 16 1 13 15 D SER 17 D SER 17 HELX_P D CYS 26 D CYS 26 1 14 10 D ALA 28 D ALA 28 HELX_P D GLY 44 D GLY 44 1 15 17 D THR 58 D THR 58 HELX_P D SER 87 D SER 87 1 16 30 hydrog WATSON-CRICK E DT 1 E N3 DT 1 1_555 F DA 25 F N1 DA 25 1_555 hydrog WATSON-CRICK E DT 1 E O4 DT 1 1_555 F DA 25 F N6 DA 25 1_555 hydrog WATSON-CRICK E DA 2 E N1 DA 2 1_555 F DT 24 F N3 DT 24 1_555 hydrog WATSON-CRICK E DA 2 E N6 DA 2 1_555 F DT 24 F O4 DT 24 1_555 hydrog WATSON-CRICK E DA 3 E N1 DA 3 1_555 F DT 23 F N3 DT 23 1_555 hydrog WATSON-CRICK E DA 3 E N6 DA 3 1_555 F DT 23 F O4 DT 23 1_555 hydrog WATSON-CRICK E DA 4 E N1 DA 4 1_555 F DT 22 F N3 DT 22 1_555 hydrog WATSON-CRICK E DA 4 E N6 DA 4 1_555 F DT 22 F O4 DT 22 1_555 hydrog WATSON-CRICK E DA 5 E N1 DA 5 1_555 F DT 21 F N3 DT 21 1_555 hydrog WATSON-CRICK E DA 5 E N6 DA 5 1_555 F DT 21 F O4 DT 21 1_555 hydrog WATSON-CRICK E DA 6 E N1 DA 6 1_555 F DT 20 F N3 DT 20 1_555 hydrog WATSON-CRICK E DA 6 E N6 DA 6 1_555 F DT 20 F O4 DT 20 1_555 hydrog WATSON-CRICK E DT 7 E N3 DT 7 1_555 F DA 19 F N1 DA 19 1_555 hydrog WATSON-CRICK E DT 7 E O4 DT 7 1_555 F DA 19 F N6 DA 19 1_555 hydrog WATSON-CRICK E DA 8 E N1 DA 8 1_555 F DT 18 F N3 DT 18 1_555 hydrog WATSON-CRICK E DA 8 E N6 DA 8 1_555 F DT 18 F O4 DT 18 1_555 hydrog DC-DG PAIR E DC 9 E O2 DC 9 1_555 F DG 17 F N1 DG 17 1_555 hydrog WATSON-CRICK E DT 10 E N3 DT 10 1_555 F DA 16 F N1 DA 16 1_555 hydrog WATSON-CRICK E DT 10 E O4 DT 10 1_555 F DA 16 F N6 DA 16 1_555 hydrog WATSON-CRICK E DC 11 E N3 DC 11 1_555 F DG 15 F N1 DG 15 1_555 hydrog WATSON-CRICK E DC 11 E N4 DC 11 1_555 F DG 15 F O6 DG 15 1_555 hydrog WATSON-CRICK E DC 11 E O2 DC 11 1_555 F DG 15 F N2 DG 15 1_555 hydrog WATSON-CRICK E DC 12 E N3 DC 12 1_555 F DG 14 F N1 DG 14 1_555 hydrog WATSON-CRICK E DC 12 E N4 DC 12 1_555 F DG 14 F O6 DG 14 1_555 hydrog WATSON-CRICK E DC 12 E O2 DC 12 1_555 F DG 14 F N2 DG 14 1_555 hydrog WATSON-CRICK E DA 13 E N1 DA 13 1_555 F DT 13 F N3 DT 13 1_555 hydrog WATSON-CRICK E DA 13 E N6 DA 13 1_555 F DT 13 F O4 DT 13 1_555 hydrog WATSON-CRICK E DT 14 E N3 DT 14 1_555 F DA 12 F N1 DA 12 1_555 hydrog WATSON-CRICK E DT 14 E O4 DT 14 1_555 F DA 12 F N6 DA 12 1_555 hydrog WATSON-CRICK E DA 15 E N1 DA 15 1_555 F DT 11 F N3 DT 11 1_555 hydrog WATSON-CRICK E DA 15 E N6 DA 15 1_555 F DT 11 F O4 DT 11 1_555 hydrog WATSON-CRICK E DG 16 E N1 DG 16 1_555 F DC 10 F N3 DC 10 1_555 hydrog WATSON-CRICK E DG 16 E N2 DG 16 1_555 F DC 10 F O2 DC 10 1_555 hydrog WATSON-CRICK E DG 16 E O6 DG 16 1_555 F DC 10 F N4 DC 10 1_555 hydrog WATSON-CRICK E DG 17 E N1 DG 17 1_555 F DC 9 F N3 DC 9 1_555 hydrog WATSON-CRICK E DG 17 E N2 DG 17 1_555 F DC 9 F O2 DC 9 1_555 hydrog WATSON-CRICK E DG 17 E O6 DG 17 1_555 F DC 9 F N4 DC 9 1_555 hydrog WATSON-CRICK E DT 18 E N3 DT 18 1_555 F DA 8 F N1 DA 8 1_555 hydrog WATSON-CRICK E DT 18 E O4 DT 18 1_555 F DA 8 F N6 DA 8 1_555 hydrog WATSON-CRICK E DA 19 E N1 DA 19 1_555 F DT 7 F N3 DT 7 1_555 hydrog WATSON-CRICK E DA 19 E N6 DA 19 1_555 F DT 7 F O4 DT 7 1_555 hydrog WATSON-CRICK E DT 20 E N3 DT 20 1_555 F DA 6 F N1 DA 6 1_555 hydrog WATSON-CRICK E DT 20 E O4 DT 20 1_555 F DA 6 F N6 DA 6 1_555 hydrog WATSON-CRICK E DT 21 E N3 DT 21 1_555 F DA 5 F N1 DA 5 1_555 hydrog WATSON-CRICK E DT 21 E O4 DT 21 1_555 F DA 5 F N6 DA 5 1_555 hydrog WATSON-CRICK E DT 22 E N3 DT 22 1_555 F DA 4 F N1 DA 4 1_555 hydrog WATSON-CRICK E DT 22 E O4 DT 22 1_555 F DA 4 F N6 DA 4 1_555 hydrog WATSON-CRICK E DT 23 E N3 DT 23 1_555 F DA 3 F N1 DA 3 1_555 hydrog WATSON-CRICK E DT 23 E O4 DT 23 1_555 F DA 3 F N6 DA 3 1_555 hydrog WATSON-CRICK E DA 24 E N1 DA 24 1_555 F DT 2 F N3 DT 2 1_555 hydrog WATSON-CRICK E DA 24 E N6 DA 24 1_555 F DT 2 F O4 DT 2 1_555 hydrog DT-DA PAIR E DT 25 E N3 DT 25 1_555 F DA 1 F N1 DA 1 1_555 hydrog WATSON-CRICK G DT 1 G N3 DT 1 1_555 H DA 25 H N1 DA 25 1_555 hydrog WATSON-CRICK G DT 1 G O4 DT 1 1_555 H DA 25 H N6 DA 25 1_555 hydrog WATSON-CRICK G DA 2 G N1 DA 2 1_555 H DT 24 H N3 DT 24 1_555 hydrog WATSON-CRICK G DA 2 G N6 DA 2 1_555 H DT 24 H O4 DT 24 1_555 hydrog WATSON-CRICK G DA 3 G N1 DA 3 1_555 H DT 23 H N3 DT 23 1_555 hydrog WATSON-CRICK G DA 3 G N6 DA 3 1_555 H DT 23 H O4 DT 23 1_555 hydrog WATSON-CRICK G DA 4 G N1 DA 4 1_555 H DT 22 H N3 DT 22 1_555 hydrog WATSON-CRICK G DA 4 G N6 DA 4 1_555 H DT 22 H O4 DT 22 1_555 hydrog WATSON-CRICK G DA 5 G N1 DA 5 1_555 H DT 21 H N3 DT 21 1_555 hydrog WATSON-CRICK G DA 5 G N6 DA 5 1_555 H DT 21 H O4 DT 21 1_555 hydrog WATSON-CRICK G DA 6 G N1 DA 6 1_555 H DT 20 H N3 DT 20 1_555 hydrog WATSON-CRICK G DA 6 G N6 DA 6 1_555 H DT 20 H O4 DT 20 1_555 hydrog WATSON-CRICK G DT 7 G N3 DT 7 1_555 H DA 19 H N1 DA 19 1_555 hydrog WATSON-CRICK G DT 7 G O4 DT 7 1_555 H DA 19 H N6 DA 19 1_555 hydrog WATSON-CRICK G DA 8 G N1 DA 8 1_555 H DT 18 H N3 DT 18 1_555 hydrog WATSON-CRICK G DA 8 G N6 DA 8 1_555 H DT 18 H O4 DT 18 1_555 hydrog WATSON-CRICK G DC 9 G N3 DC 9 1_555 H DG 17 H N1 DG 17 1_555 hydrog WATSON-CRICK G DC 9 G N4 DC 9 1_555 H DG 17 H O6 DG 17 1_555 hydrog WATSON-CRICK G DC 9 G O2 DC 9 1_555 H DG 17 H N2 DG 17 1_555 hydrog WATSON-CRICK G DT 10 G N3 DT 10 1_555 H DA 16 H N1 DA 16 1_555 hydrog WATSON-CRICK G DT 10 G O4 DT 10 1_555 H DA 16 H N6 DA 16 1_555 hydrog WATSON-CRICK G DC 11 G N3 DC 11 1_555 H DG 15 H N1 DG 15 1_555 hydrog WATSON-CRICK G DC 11 G N4 DC 11 1_555 H DG 15 H O6 DG 15 1_555 hydrog WATSON-CRICK G DC 11 G O2 DC 11 1_555 H DG 15 H N2 DG 15 1_555 hydrog WATSON-CRICK G DC 12 G N3 DC 12 1_555 H DG 14 H N1 DG 14 1_555 hydrog WATSON-CRICK G DC 12 G N4 DC 12 1_555 H DG 14 H O6 DG 14 1_555 hydrog WATSON-CRICK G DC 12 G O2 DC 12 1_555 H DG 14 H N2 DG 14 1_555 hydrog WATSON-CRICK G DA 13 G N1 DA 13 1_555 H DT 13 H N3 DT 13 1_555 hydrog WATSON-CRICK G DA 13 G N6 DA 13 1_555 H DT 13 H O4 DT 13 1_555 hydrog WATSON-CRICK G DT 14 G N3 DT 14 1_555 H DA 12 H N1 DA 12 1_555 hydrog WATSON-CRICK G DT 14 G O4 DT 14 1_555 H DA 12 H N6 DA 12 1_555 hydrog WATSON-CRICK G DA 15 G N1 DA 15 1_555 H DT 11 H N3 DT 11 1_555 hydrog WATSON-CRICK G DA 15 G N6 DA 15 1_555 H DT 11 H O4 DT 11 1_555 hydrog WATSON-CRICK G DG 16 G N1 DG 16 1_555 H DC 10 H N3 DC 10 1_555 hydrog WATSON-CRICK G DG 16 G N2 DG 16 1_555 H DC 10 H O2 DC 10 1_555 hydrog WATSON-CRICK G DG 16 G O6 DG 16 1_555 H DC 10 H N4 DC 10 1_555 hydrog WATSON-CRICK G DG 17 G N1 DG 17 1_555 H DC 9 H N3 DC 9 1_555 hydrog WATSON-CRICK G DG 17 G N2 DG 17 1_555 H DC 9 H O2 DC 9 1_555 hydrog WATSON-CRICK G DG 17 G O6 DG 17 1_555 H DC 9 H N4 DC 9 1_555 hydrog WATSON-CRICK G DT 18 G N3 DT 18 1_555 H DA 8 H N1 DA 8 1_555 hydrog WATSON-CRICK G DT 18 G O4 DT 18 1_555 H DA 8 H N6 DA 8 1_555 hydrog WATSON-CRICK G DA 19 G N1 DA 19 1_555 H DT 7 H N3 DT 7 1_555 hydrog WATSON-CRICK G DA 19 G N6 DA 19 1_555 H DT 7 H O4 DT 7 1_555 hydrog DT-DA PAIR G DT 20 G N3 DT 20 1_555 H DA 6 H N1 DA 6 1_555 hydrog WATSON-CRICK G DT 21 G N3 DT 21 1_555 H DA 5 H N1 DA 5 1_555 hydrog WATSON-CRICK G DT 21 G O4 DT 21 1_555 H DA 5 H N6 DA 5 1_555 hydrog WATSON-CRICK G DT 22 G N3 DT 22 1_555 H DA 4 H N1 DA 4 1_555 hydrog WATSON-CRICK G DT 22 G O4 DT 22 1_555 H DA 4 H N6 DA 4 1_555 hydrog WATSON-CRICK G DT 23 G N3 DT 23 1_555 H DA 3 H N1 DA 3 1_555 hydrog WATSON-CRICK G DT 23 G O4 DT 23 1_555 H DA 3 H N6 DA 3 1_555 hydrog WATSON-CRICK G DA 24 G N1 DA 24 1_555 H DT 2 H N3 DT 2 1_555 hydrog WATSON-CRICK G DA 24 G N6 DA 24 1_555 H DT 2 H O4 DT 2 1_555 hydrog DT-DA PAIR G DT 25 G N3 DT 25 1_555 H DA 1 H N1 DA 1 1_555 Transcription/DNA wHTH, HTH, Transcriptional Regulator, benA promoter site 1, Transcription-DNA complex A ARG 53 A ARG 53 1 A PRO 54 A PRO 54 3.92 A C B D E G F H BENM_ACIAD UNP 1 1 O68014 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVS MTKRIAS 4IHT PDB 2 4IHT TAAAAATACTCCATAGGTATTTTAT 4IHT PDB 3 4IHT ATAAAATACCTATGGAGTATTTTTA 1 87 4IHT 1 87 O68014 A 1 1 87 1 87 4IHT 1 87 O68014 B 1 1 87 1 87 4IHT 1 87 O68014 C 1 1 87 1 87 4IHT 1 87 O68014 D 1 1 87 1 25 4IHT 1 25 4IHT E 2 1 25 1 25 4IHT 1 25 4IHT G 2 1 25 1 25 4IHT 1 25 4IHT F 3 1 25 1 25 4IHT 1 25 4IHT H 3 1 25 1 expression tag GLY 88 4IHT A O68014 UNP 88 1 expression tag HIS 89 4IHT A O68014 UNP 89 1 expression tag HIS 90 4IHT A O68014 UNP 90 1 expression tag HIS 91 4IHT A O68014 UNP 91 1 expression tag HIS 92 4IHT A O68014 UNP 92 1 expression tag HIS 93 4IHT A O68014 UNP 93 1 expression tag HIS 94 4IHT A O68014 UNP 94 2 expression tag GLY 88 4IHT B O68014 UNP 88 2 expression tag HIS 89 4IHT B O68014 UNP 89 2 expression tag HIS 90 4IHT B O68014 UNP 90 2 expression tag HIS 91 4IHT B O68014 UNP 91 2 expression tag HIS 92 4IHT B O68014 UNP 92 2 expression tag HIS 93 4IHT B O68014 UNP 93 2 expression tag HIS 94 4IHT B O68014 UNP 94 3 expression tag GLY 88 4IHT C O68014 UNP 88 3 expression tag HIS 89 4IHT C O68014 UNP 89 3 expression tag HIS 90 4IHT C O68014 UNP 90 3 expression tag HIS 91 4IHT C O68014 UNP 91 3 expression tag HIS 92 4IHT C O68014 UNP 92 3 expression tag HIS 93 4IHT C O68014 UNP 93 3 expression tag HIS 94 4IHT C O68014 UNP 94 4 expression tag GLY 88 4IHT D O68014 UNP 88 4 expression tag HIS 89 4IHT D O68014 UNP 89 4 expression tag HIS 90 4IHT D O68014 UNP 90 4 expression tag HIS 91 4IHT D O68014 UNP 91 4 expression tag HIS 92 4IHT D O68014 UNP 92 4 expression tag HIS 93 4IHT D O68014 UNP 93 4 expression tag HIS 94 4IHT D O68014 UNP 94 2 anti-parallel C LEU 48 C LEU 48 C GLU 49 C GLU 49 C LYS 56 C LYS 56 C THR 57 C THR 57 18 P 21 21 2