0.023736 0.000000 0.005306 0.000000 0.009826 0.000000 0.000000 0.000000 0.022122 0.00000 0.00000 0.00000 Li de la Sierra-Gallay, I. Fonvielle, M. van Tilbeurgh, H. Arthur, M. Etheve-Quelquejeu, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 102.60 90.00 42.130 101.770 46.320 C14 H19 N8 O6 P 426.324 n 2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate) RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C3 H7 N O2 89.093 D-ALANINE D-peptide linking C5 H9 N O4 147.129 GAMMA-D-GLUTAMIC ACID D-GLUTAMIC ACID D-gamma-peptide, C-delta linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C11 H19 N O8 293.270 N-acetyl-alpha-muramic acid N-acetyl-muramic acid; N-ACETYLMURAMIC ACID D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H14 N2 O12 P2 404.161 URIDINE-5'-DIPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N C N 6 R C N 7 S C N 8 N O N 9 R C Y 10 N N Y 11 N C Y 12 N C N 13 N C N 14 N C Y 15 N N Y 16 N N N 17 R C N 18 N O Y 19 N N Y 20 N C Y 21 N C Y 22 N N Y 23 N C Y 24 N N Y 25 N C Y 26 N N Y 27 N C N 28 N N N 29 N O N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N N N 70 N C N 71 N N N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N O N 113 N O N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N O N 123 N P N 124 N O N 125 N O N 126 N O N 127 N C N 128 R C N 129 N O N 130 S C N 131 N O N 132 R C N 133 N O N 134 R C N 135 N N N 136 N C N 137 N O N 138 N N N 139 N C N 140 N N N 141 N C N 142 N C N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 R C N 159 N C N 160 N O N 161 N C N 162 N S N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 R C N 173 N C N 174 N C N 175 N O N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 R C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N O N 192 N O N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N O N 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N C N 230 N O N 231 N O N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 N C N 244 N C N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N C N 253 N O N 254 N C N 255 N O N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N O N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 S C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N C N 342 N N N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N S N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 S C N 380 R C N 381 R C N 382 S C N 383 R C N 384 N C N 385 N C N 386 N C N 387 R C N 388 N C N 389 N C N 390 N O N 391 N O N 392 N O N 393 N O N 394 N O N 395 N O N 396 N O N 397 N O N 398 N N N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C N 446 N C N 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N O N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N N N 473 S C N 474 N C N 475 N O N 476 R C N 477 N O N 478 N C N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N N N 490 S C N 491 N C N 492 N O N 493 N C Y 494 N C Y 495 N C Y 496 N C Y 497 N N Y 498 N C Y 499 N C Y 500 N C Y 501 N C Y 502 N C N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N N N 517 S C N 518 N C N 519 N O N 520 N C Y 521 N C Y 522 N C Y 523 N C Y 524 N C Y 525 N C Y 526 N C N 527 N O N 528 N O N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N N N 541 N C N 542 N N N 543 N C N 544 N C N 545 N C N 546 N O N 547 N O N 548 R C N 549 R C N 550 N O N 551 S C N 552 R C N 553 N O N 554 N O N 555 N C N 556 N O N 557 N P N 558 N O N 559 N O N 560 N O N 561 N P N 562 N O N 563 N O N 564 N O N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N N N 580 S C N 581 N C N 582 N O N 583 N C N 584 N C N 585 N C N 586 N O N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing Y 9 N doub Y 10 N sing Y 11 N sing N 12 N doub Y 13 N doub N 14 N sing Y 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing Y 22 N doub Y 23 N sing Y 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub Y 28 N doub Y 29 N sing Y 30 N doub Y 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N sing Y 271 N doub Y 272 N doub N 273 N sing Y 274 N sing N 275 N sing Y 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N doub N 422 N sing Y 423 N doub N 424 N sing Y 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N doub N 482 N sing N 483 N sing N 484 N sing N 485 N sing Y 486 N doub Y 487 N sing Y 488 N sing N 489 N sing Y 490 N doub Y 491 N sing Y 492 N sing N 493 N sing Y 494 N sing Y 495 N doub N 496 N sing Y 497 N doub N 498 N sing Y 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N doub N 510 N sing N 511 N sing N 512 N sing N 513 N sing Y 514 N doub Y 515 N sing Y 516 N sing N 517 N sing Y 518 N doub N 519 N sing Y 520 N doub N 521 N sing Y 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N doub N 532 N sing N 533 N sing N 534 N sing N 535 N doub N 536 N doub N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N doub N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N doub N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N doub N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 52 7278 7281 10.1002/anie.201301411 23744707 The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to Peptidoglycan Precursors 2013 10.2210/pdb4ii9/pdb pdb_00004ii9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors PIXEL 2012-11-14 DECTRIS PILATUS 6M channel cut cryogenically cooled monochromator crystal SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 PROXIMA 1 SOLEIL 0.9791 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 39212.918 FemX 2.3.2.10 1 man polymer 463.505 5-mer peptide 1 syn polymer 973.715 RNA (5'-R(P*CP*CP*(A9Z))-3') 1 syn polymer 92.094 GLYCEROL 1 syn non-polymer 404.161 URIDINE-5'-DIPHOSPHATE 1 syn non-polymer 293.270 N-acetyl-alpha-muramic acid 1 syn non-polymer 18.015 water 296 nat water no no MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKDGHHHHHH MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKDGHHHHHH A polypeptide(L) no yes A(FGA)C(DAL)(DAL) AECAA B polypeptide(L) no yes CC(A9Z) CCX C polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n CIP102810T sample femX 1629 Weissella viridescens 562 Escherichia coli TOP10 PLASMID pTrc-His60 1 2.38 48.40 VAPOR DIFFUSION, SITTING DROP 5.6 0.1M Tris-sodium citrate buffer, 0.2M ammonium acetate, 33% polyethylene glycol 4k, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 atom_site chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_validate_polymer_linkage pdbx_validate_rmsd_angle struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Advisory Atomic model Data collection Database references Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2013-07-03 1 1 2013-08-07 2 0 2020-07-29 2 1 2023-11-08 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_validate_rmsd_angle.auth_atom_id_3 _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession a-D-GlcpNAc3<C3O2> MurNAc apo-form structure protein-substrate complex K36M mutant Y254 mutant apo form structure form II protein-substrate product complex RCSB Y PDBJ 2012-12-20 REL REL GOL GLYCEROL UDP URIDINE-5'-DIPHOSPHATE MUB N-acetyl-alpha-muramic acid HOH water synthetic peptide sample synthetic peptide sample 3GKR PDB experimental model GOL 1 4 GOL GOL 402 A UAG 1 5 UDP UDP 101 B UAG 1 6 MUB MUB 102 B HOH 1 7 HOH HOH 501 A HOH 2 7 HOH HOH 502 A HOH 3 7 HOH HOH 503 A HOH 5 7 HOH HOH 504 A HOH 6 7 HOH HOH 505 A HOH 7 7 HOH HOH 506 A HOH 8 7 HOH HOH 507 A HOH 9 7 HOH HOH 508 A HOH 10 7 HOH HOH 509 A HOH 11 7 HOH HOH 510 A HOH 12 7 HOH HOH 511 A HOH 13 7 HOH HOH 512 A HOH 14 7 HOH HOH 513 A HOH 15 7 HOH HOH 514 A HOH 16 7 HOH HOH 515 A HOH 17 7 HOH HOH 516 A HOH 18 7 HOH HOH 517 A HOH 19 7 HOH HOH 518 A HOH 20 7 HOH HOH 519 A HOH 21 7 HOH HOH 520 A HOH 22 7 HOH HOH 521 A HOH 23 7 HOH HOH 522 A HOH 24 7 HOH HOH 523 A HOH 25 7 HOH HOH 524 A HOH 26 7 HOH HOH 525 A HOH 27 7 HOH HOH 526 A HOH 28 7 HOH HOH 527 A HOH 29 7 HOH HOH 528 A HOH 30 7 HOH HOH 529 A HOH 31 7 HOH HOH 530 A HOH 32 7 HOH HOH 531 A HOH 33 7 HOH HOH 532 A HOH 34 7 HOH HOH 533 A HOH 35 7 HOH HOH 534 A HOH 36 7 HOH HOH 535 A HOH 37 7 HOH HOH 536 A HOH 38 7 HOH HOH 537 A HOH 39 7 HOH HOH 538 A HOH 40 7 HOH HOH 539 A HOH 41 7 HOH HOH 540 A HOH 42 7 HOH HOH 541 A HOH 43 7 HOH HOH 542 A HOH 44 7 HOH HOH 543 A HOH 45 7 HOH HOH 544 A HOH 46 7 HOH HOH 545 A HOH 48 7 HOH HOH 546 A HOH 49 7 HOH HOH 547 A HOH 50 7 HOH HOH 548 A HOH 51 7 HOH HOH 549 A HOH 52 7 HOH HOH 550 A HOH 53 7 HOH HOH 551 A HOH 54 7 HOH HOH 552 A HOH 56 7 HOH HOH 553 A HOH 58 7 HOH HOH 554 A HOH 59 7 HOH HOH 555 A HOH 60 7 HOH HOH 556 A HOH 61 7 HOH HOH 557 A HOH 62 7 HOH HOH 558 A HOH 63 7 HOH HOH 559 A HOH 64 7 HOH HOH 560 A HOH 65 7 HOH HOH 561 A HOH 66 7 HOH HOH 562 A HOH 67 7 HOH HOH 563 A HOH 68 7 HOH HOH 564 A HOH 69 7 HOH HOH 565 A HOH 70 7 HOH HOH 566 A HOH 71 7 HOH HOH 567 A HOH 72 7 HOH HOH 568 A HOH 73 7 HOH HOH 569 A HOH 74 7 HOH HOH 570 A HOH 75 7 HOH HOH 571 A HOH 76 7 HOH HOH 572 A HOH 77 7 HOH HOH 573 A HOH 78 7 HOH HOH 574 A HOH 79 7 HOH HOH 575 A HOH 80 7 HOH HOH 576 A HOH 81 7 HOH HOH 577 A HOH 83 7 HOH HOH 578 A HOH 84 7 HOH HOH 579 A HOH 85 7 HOH HOH 580 A HOH 86 7 HOH HOH 581 A HOH 87 7 HOH HOH 582 A HOH 88 7 HOH HOH 583 A HOH 89 7 HOH HOH 584 A HOH 90 7 HOH HOH 585 A HOH 91 7 HOH HOH 586 A HOH 92 7 HOH HOH 587 A HOH 93 7 HOH HOH 588 A HOH 94 7 HOH HOH 589 A HOH 95 7 HOH HOH 590 A HOH 96 7 HOH HOH 591 A HOH 98 7 HOH HOH 592 A HOH 99 7 HOH HOH 593 A HOH 100 7 HOH HOH 594 A HOH 101 7 HOH HOH 595 A HOH 102 7 HOH HOH 596 A HOH 103 7 HOH HOH 597 A HOH 104 7 HOH HOH 598 A HOH 105 7 HOH HOH 599 A HOH 106 7 HOH HOH 600 A HOH 107 7 HOH HOH 601 A HOH 109 7 HOH HOH 602 A HOH 110 7 HOH HOH 603 A HOH 111 7 HOH HOH 604 A HOH 112 7 HOH HOH 605 A HOH 113 7 HOH HOH 606 A HOH 114 7 HOH HOH 607 A HOH 115 7 HOH HOH 608 A HOH 116 7 HOH HOH 609 A HOH 117 7 HOH HOH 610 A HOH 118 7 HOH HOH 611 A HOH 119 7 HOH HOH 612 A HOH 120 7 HOH HOH 613 A HOH 121 7 HOH HOH 614 A HOH 122 7 HOH HOH 615 A HOH 123 7 HOH HOH 616 A HOH 124 7 HOH HOH 617 A HOH 125 7 HOH HOH 618 A HOH 126 7 HOH HOH 619 A HOH 127 7 HOH HOH 620 A HOH 129 7 HOH HOH 621 A HOH 130 7 HOH HOH 622 A HOH 131 7 HOH HOH 623 A HOH 132 7 HOH HOH 624 A HOH 133 7 HOH HOH 625 A HOH 134 7 HOH HOH 626 A HOH 135 7 HOH HOH 627 A HOH 136 7 HOH HOH 628 A HOH 137 7 HOH HOH 629 A HOH 138 7 HOH HOH 630 A HOH 139 7 HOH HOH 631 A HOH 140 7 HOH HOH 632 A HOH 141 7 HOH HOH 633 A HOH 142 7 HOH HOH 634 A HOH 143 7 HOH HOH 635 A HOH 144 7 HOH HOH 636 A HOH 145 7 HOH HOH 637 A HOH 147 7 HOH HOH 638 A HOH 148 7 HOH HOH 639 A HOH 149 7 HOH HOH 640 A HOH 150 7 HOH HOH 641 A HOH 151 7 HOH HOH 642 A HOH 152 7 HOH HOH 643 A HOH 153 7 HOH HOH 644 A HOH 154 7 HOH HOH 645 A HOH 155 7 HOH HOH 646 A HOH 156 7 HOH HOH 647 A HOH 157 7 HOH HOH 648 A HOH 158 7 HOH HOH 649 A HOH 159 7 HOH HOH 650 A HOH 160 7 HOH HOH 651 A HOH 161 7 HOH HOH 652 A HOH 162 7 HOH HOH 653 A HOH 163 7 HOH HOH 654 A HOH 164 7 HOH HOH 655 A HOH 165 7 HOH HOH 656 A HOH 166 7 HOH HOH 657 A HOH 167 7 HOH HOH 658 A HOH 168 7 HOH HOH 659 A HOH 169 7 HOH HOH 660 A HOH 170 7 HOH HOH 661 A HOH 171 7 HOH HOH 662 A HOH 172 7 HOH HOH 663 A HOH 173 7 HOH HOH 664 A HOH 174 7 HOH HOH 665 A HOH 175 7 HOH HOH 666 A HOH 176 7 HOH HOH 667 A HOH 177 7 HOH HOH 668 A HOH 178 7 HOH HOH 669 A HOH 179 7 HOH HOH 670 A HOH 180 7 HOH HOH 671 A HOH 181 7 HOH HOH 672 A HOH 183 7 HOH HOH 673 A HOH 184 7 HOH HOH 674 A HOH 185 7 HOH HOH 675 A HOH 186 7 HOH HOH 676 A HOH 187 7 HOH HOH 677 A HOH 188 7 HOH HOH 678 A HOH 189 7 HOH HOH 679 A HOH 190 7 HOH HOH 680 A HOH 191 7 HOH HOH 681 A HOH 192 7 HOH HOH 682 A HOH 193 7 HOH HOH 683 A HOH 194 7 HOH HOH 684 A HOH 195 7 HOH HOH 685 A HOH 196 7 HOH HOH 686 A HOH 197 7 HOH HOH 687 A HOH 198 7 HOH HOH 688 A HOH 199 7 HOH HOH 689 A HOH 200 7 HOH HOH 690 A HOH 201 7 HOH HOH 691 A HOH 202 7 HOH HOH 692 A HOH 204 7 HOH HOH 693 A HOH 205 7 HOH HOH 694 A HOH 206 7 HOH HOH 695 A HOH 207 7 HOH HOH 696 A HOH 208 7 HOH HOH 697 A HOH 209 7 HOH HOH 698 A HOH 210 7 HOH HOH 699 A HOH 211 7 HOH HOH 700 A HOH 212 7 HOH HOH 701 A HOH 213 7 HOH HOH 702 A HOH 214 7 HOH HOH 703 A HOH 215 7 HOH HOH 704 A HOH 216 7 HOH HOH 705 A HOH 217 7 HOH HOH 706 A HOH 218 7 HOH HOH 707 A HOH 219 7 HOH HOH 708 A HOH 220 7 HOH HOH 709 A HOH 221 7 HOH HOH 710 A HOH 222 7 HOH HOH 711 A HOH 223 7 HOH HOH 712 A HOH 224 7 HOH HOH 713 A HOH 225 7 HOH HOH 714 A HOH 226 7 HOH HOH 715 A HOH 227 7 HOH HOH 716 A HOH 228 7 HOH HOH 717 A HOH 229 7 HOH HOH 718 A HOH 230 7 HOH HOH 719 A HOH 232 7 HOH HOH 720 A HOH 233 7 HOH HOH 721 A HOH 234 7 HOH HOH 722 A HOH 235 7 HOH HOH 723 A HOH 237 7 HOH HOH 724 A HOH 239 7 HOH HOH 725 A HOH 240 7 HOH HOH 726 A HOH 242 7 HOH HOH 727 A HOH 243 7 HOH HOH 728 A HOH 244 7 HOH HOH 729 A HOH 245 7 HOH HOH 730 A HOH 246 7 HOH HOH 731 A HOH 247 7 HOH HOH 732 A HOH 248 7 HOH HOH 733 A HOH 250 7 HOH HOH 734 A HOH 251 7 HOH HOH 735 A HOH 253 7 HOH HOH 736 A HOH 254 7 HOH HOH 737 A HOH 255 7 HOH HOH 738 A HOH 256 7 HOH HOH 739 A HOH 257 7 HOH HOH 740 A HOH 258 7 HOH HOH 741 A HOH 259 7 HOH HOH 742 A HOH 260 7 HOH HOH 743 A HOH 261 7 HOH HOH 744 A HOH 263 7 HOH HOH 745 A HOH 264 7 HOH HOH 746 A HOH 265 7 HOH HOH 747 A HOH 266 7 HOH HOH 748 A HOH 267 7 HOH HOH 749 A HOH 268 7 HOH HOH 750 A HOH 269 7 HOH HOH 751 A HOH 270 7 HOH HOH 752 A HOH 271 7 HOH HOH 753 A HOH 272 7 HOH HOH 754 A HOH 273 7 HOH HOH 755 A HOH 274 7 HOH HOH 756 A HOH 275 7 HOH HOH 757 A HOH 276 7 HOH HOH 758 A HOH 277 7 HOH HOH 759 A HOH 278 7 HOH HOH 760 A HOH 279 7 HOH HOH 761 A HOH 280 7 HOH HOH 762 A HOH 281 7 HOH HOH 763 A HOH 282 7 HOH HOH 764 A HOH 283 7 HOH HOH 765 A HOH 285 7 HOH HOH 766 A HOH 286 7 HOH HOH 767 A HOH 287 7 HOH HOH 768 A HOH 288 7 HOH HOH 769 A HOH 289 7 HOH HOH 770 A HOH 290 7 HOH HOH 771 A HOH 291 7 HOH HOH 772 A HOH 292 7 HOH HOH 773 A HOH 293 7 HOH HOH 774 A HOH 294 7 HOH HOH 775 A HOH 296 7 HOH HOH 776 A HOH 4 7 HOH HOH 777 A HOH 108 7 HOH HOH 778 A HOH 284 7 HOH HOH 779 A HOH 47 7 HOH HOH 201 B HOH 55 7 HOH HOH 202 B HOH 57 7 HOH HOH 203 B HOH 128 7 HOH HOH 204 B HOH 182 7 HOH HOH 205 B HOH 236 7 HOH HOH 206 B HOH 238 7 HOH HOH 207 B HOH 241 7 HOH HOH 208 B HOH 249 7 HOH HOH 209 B HOH 252 7 HOH HOH 210 B HOH 262 7 HOH HOH 211 B HOH 295 7 HOH HOH 212 B HOH 82 7 HOH HOH 101 C HOH 97 7 HOH HOH 102 C HOH 146 7 HOH HOH 103 C HOH 203 7 HOH HOH 104 C HOH 231 7 HOH HOH 105 C n 1 0 A PRO 1 n 2 PRO 1 A VAL 2 n 3 VAL 2 A LEU 3 n 4 LEU 3 A ASN 4 n 5 ASN 4 A LEU 5 n 6 LEU 5 A ASN 6 n 7 ASN 6 A ASP 7 n 8 ASP 7 A PRO 8 n 9 PRO 8 A GLN 9 n 10 GLN 9 A ALA 10 n 11 ALA 10 A VAL 11 n 12 VAL 11 A GLU 12 n 13 GLU 12 A ARG 13 n 14 ARG 13 A TYR 14 n 15 TYR 14 A GLU 15 n 16 GLU 15 A GLU 16 n 17 GLU 16 A PHE 17 n 18 PHE 17 A MET 18 n 19 MET 18 A ARG 19 n 20 ARG 19 A GLN 20 n 21 GLN 20 A SER 21 n 22 SER 21 A PRO 22 n 23 PRO 22 A TYR 23 n 24 TYR 23 A GLY 24 n 25 GLY 24 A GLN 25 n 26 GLN 25 A VAL 26 n 27 VAL 26 A THR 27 n 28 THR 27 A GLN 28 n 29 GLN 28 A ASP 29 n 30 ASP 29 A LEU 30 n 31 LEU 30 A GLY 31 n 32 GLY 31 A TRP 32 n 33 TRP 32 A ALA 33 n 34 ALA 33 A LYS 34 n 35 LYS 34 A VAL 35 n 36 VAL 35 A LYS 36 n 37 LYS 36 A ASN 37 n 38 ASN 37 A ASN 38 n 39 ASN 38 A TRP 39 n 40 TRP 39 A GLU 40 n 41 GLU 40 A PRO 41 n 42 PRO 41 A VAL 42 n 43 VAL 42 A ASP 43 n 44 ASP 43 A VAL 44 n 45 VAL 44 A TYR 45 n 46 TYR 45 A LEU 46 n 47 LEU 46 A GLU 47 n 48 GLU 47 A ASP 48 n 49 ASP 48 A ASP 49 n 50 ASP 49 A GLN 50 n 51 GLN 50 A GLY 51 n 52 GLY 51 A ALA 52 n 53 ALA 52 A ILE 53 n 54 ILE 53 A ILE 54 n 55 ILE 54 A ALA 55 n 56 ALA 55 A ALA 56 n 57 ALA 56 A MET 57 n 58 MET 57 A SER 58 n 59 SER 58 A MET 59 n 60 MET 59 A LEU 60 n 61 LEU 60 A LEU 61 n 62 LEU 61 A GLY 62 n 63 GLY 62 A ASP 63 n 64 ASP 63 A THR 64 n 65 THR 64 A PRO 65 n 66 PRO 65 A THR 66 n 67 THR 66 A ASP 67 n 68 ASP 67 A LYS 68 n 69 LYS 68 A LYS 69 n 70 LYS 69 A PHE 70 n 71 PHE 70 A ALA 71 n 72 ALA 71 A TYR 72 n 73 TYR 72 A ALA 73 n 74 ALA 73 A SER 74 n 75 SER 74 A LYS 75 n 76 LYS 75 A GLY 76 n 77 GLY 76 A PRO 77 n 78 PRO 77 A VAL 78 n 79 VAL 78 A MET 79 n 80 MET 79 A ASP 80 n 81 ASP 80 A VAL 81 n 82 VAL 81 A THR 82 n 83 THR 82 A ASP 83 n 84 ASP 83 A VAL 84 n 85 VAL 84 A ASP 85 n 86 ASP 85 A LEU 86 n 87 LEU 86 A LEU 87 n 88 LEU 87 A ASP 88 n 89 ASP 88 A ARG 89 n 90 ARG 89 A LEU 90 n 91 LEU 90 A VAL 91 n 92 VAL 91 A ASP 92 n 93 ASP 92 A GLU 93 n 94 GLU 93 A ALA 94 n 95 ALA 94 A VAL 95 n 96 VAL 95 A LYS 96 n 97 LYS 96 A ALA 97 n 98 ALA 97 A LEU 98 n 99 LEU 98 A ASP 99 n 100 ASP 99 A GLY 100 n 101 GLY 100 A ARG 101 n 102 ARG 101 A ALA 102 n 103 ALA 102 A TYR 103 n 104 TYR 103 A VAL 104 n 105 VAL 104 A LEU 105 n 106 LEU 105 A ARG 106 n 107 ARG 106 A PHE 107 n 108 PHE 107 A ASP 108 n 109 ASP 108 A PRO 109 n 110 PRO 109 A GLU 110 n 111 GLU 110 A VAL 111 n 112 VAL 111 A ALA 112 n 113 ALA 112 A TYR 113 n 114 TYR 113 A SER 114 n 115 SER 114 A ASP 115 n 116 ASP 115 A GLU 116 n 117 GLU 116 A PHE 117 n 118 PHE 117 A ASN 118 n 119 ASN 118 A THR 119 n 120 THR 119 A THR 120 n 121 THR 120 A LEU 121 n 122 LEU 121 A GLN 122 n 123 GLN 122 A ASP 123 n 124 ASP 123 A HIS 124 n 125 HIS 124 A GLY 125 n 126 GLY 125 A TYR 126 n 127 TYR 126 A VAL 127 n 128 VAL 127 A THR 128 n 129 THR 128 A ARG 129 n 130 ARG 129 A ASN 130 n 131 ASN 130 A ARG 131 n 132 ARG 131 A ASN 132 n 133 ASN 132 A VAL 133 n 134 VAL 133 A ALA 134 n 135 ALA 134 A ASP 135 n 136 ASP 135 A ALA 136 n 137 ALA 136 A GLY 137 n 138 GLY 137 A MET 138 n 139 MET 138 A HIS 139 n 140 HIS 139 A ALA 140 n 141 ALA 140 A THR 141 n 142 THR 141 A ILE 142 n 143 ILE 142 A GLN 143 n 144 GLN 143 A PRO 144 n 145 PRO 144 A ARG 145 n 146 ARG 145 A LEU 146 n 147 LEU 146 A ASN 147 n 148 ASN 147 A MET 148 n 149 MET 148 A VAL 149 n 150 VAL 149 A LEU 150 n 151 LEU 150 A ASP 151 n 152 ASP 151 A LEU 152 n 153 LEU 152 A THR 153 n 154 THR 153 A LYS 154 n 155 LYS 154 A PHE 155 n 156 PHE 155 A PRO 156 n 157 PRO 156 A ASP 157 n 158 ASP 157 A ALA 158 n 159 ALA 158 A LYS 159 n 160 LYS 159 A THR 160 n 161 THR 160 A THR 161 n 162 THR 161 A LEU 162 n 163 LEU 162 A ASP 163 n 164 ASP 163 A LEU 164 n 165 LEU 164 A TYR 165 n 166 TYR 165 A PRO 166 n 167 PRO 166 A SER 167 n 168 SER 167 A LYS 168 n 169 LYS 168 A THR 169 n 170 THR 169 A LYS 170 n 171 LYS 170 A SER 171 n 172 SER 171 A LYS 172 n 173 LYS 172 A ILE 173 n 174 ILE 173 A LYS 174 n 175 LYS 174 A ARG 175 n 176 ARG 175 A PRO 176 n 177 PRO 176 A PHE 177 n 178 PHE 177 A ARG 178 n 179 ARG 178 A ASP 179 n 180 ASP 179 A GLY 180 n 181 GLY 180 A VAL 181 n 182 VAL 181 A GLU 182 n 183 GLU 182 A VAL 183 n 184 VAL 183 A HIS 184 n 185 HIS 184 A SER 185 n 186 SER 185 A GLY 186 n 187 GLY 186 A ASN 187 n 188 ASN 187 A SER 188 n 189 SER 188 A ALA 189 n 190 ALA 189 A THR 190 n 191 THR 190 A GLU 191 n 192 GLU 191 A LEU 192 n 193 LEU 192 A ASP 193 n 194 ASP 193 A GLU 194 n 195 GLU 194 A PHE 195 n 196 PHE 195 A PHE 196 n 197 PHE 196 A LYS 197 n 198 LYS 197 A THR 198 n 199 THR 198 A TYR 199 n 200 TYR 199 A THR 200 n 201 THR 200 A THR 201 n 202 THR 201 A MET 202 n 203 MET 202 A ALA 203 n 204 ALA 203 A GLU 204 n 205 GLU 204 A ARG 205 n 206 ARG 205 A HIS 206 n 207 HIS 206 A GLY 207 n 208 GLY 207 A ILE 208 n 209 ILE 208 A THR 209 n 210 THR 209 A HIS 210 n 211 HIS 210 A ARG 211 n 212 ARG 211 A PRO 212 n 213 PRO 212 A ILE 213 n 214 ILE 213 A GLU 214 n 215 GLU 214 A TYR 215 n 216 TYR 215 A PHE 216 n 217 PHE 216 A GLN 217 n 218 GLN 217 A ARG 218 n 219 ARG 218 A MET 219 n 220 MET 219 A GLN 220 n 221 GLN 220 A ALA 221 n 222 ALA 221 A ALA 222 n 223 ALA 222 A PHE 223 n 224 PHE 223 A ASP 224 n 225 ASP 224 A ALA 225 n 226 ALA 225 A ASP 226 n 227 ASP 226 A THR 227 n 228 THR 227 A MET 228 n 229 MET 228 A ARG 229 n 230 ARG 229 A ILE 230 n 231 ILE 230 A PHE 231 n 232 PHE 231 A VAL 232 n 233 VAL 232 A ALA 233 n 234 ALA 233 A GLU 234 n 235 GLU 234 A ARG 235 n 236 ARG 235 A GLU 236 n 237 GLU 236 A GLY 237 n 238 GLY 237 A LYS 238 n 239 LYS 238 A LEU 239 n 240 LEU 239 A LEU 240 n 241 LEU 240 A SER 241 n 242 SER 241 A THR 242 n 243 THR 242 A GLY 243 n 244 GLY 243 A ILE 244 n 245 ILE 244 A ALA 245 n 246 ALA 245 A LEU 246 n 247 LEU 246 A LYS 247 n 248 LYS 247 A TYR 248 n 249 TYR 248 A GLY 249 n 250 GLY 249 A ARG 250 n 251 ARG 250 A LYS 251 n 252 LYS 251 A ILE 252 n 253 ILE 252 A TRP 253 n 254 TRP 253 A TYR 254 n 255 TYR 254 A MET 255 n 256 MET 255 A TYR 256 n 257 TYR 256 A ALA 257 n 258 ALA 257 A GLY 258 n 259 GLY 258 A SER 259 n 260 SER 259 A MET 260 n 261 MET 260 A ASP 261 n 262 ASP 261 A GLY 262 n 263 GLY 262 A ASN 263 n 264 ASN 263 A THR 264 n 265 THR 264 A TYR 265 n 266 TYR 265 A TYR 266 n 267 TYR 266 A ALA 267 n 268 ALA 267 A PRO 268 n 269 PRO 268 A TYR 269 n 270 TYR 269 A ALA 270 n 271 ALA 270 A VAL 271 n 272 VAL 271 A GLN 272 n 273 GLN 272 A SER 273 n 274 SER 273 A GLU 274 n 275 GLU 274 A MET 275 n 276 MET 275 A ILE 276 n 277 ILE 276 A GLN 277 n 278 GLN 277 A TRP 278 n 279 TRP 278 A ALA 279 n 280 ALA 279 A LEU 280 n 281 LEU 280 A ASP 281 n 282 ASP 281 A THR 282 n 283 THR 282 A ASN 283 n 284 ASN 283 A THR 284 n 285 THR 284 A ASP 285 n 286 ASP 285 A LEU 286 n 287 LEU 286 A TYR 287 n 288 TYR 287 A ASP 288 n 289 ASP 288 A LEU 289 n 290 LEU 289 A GLY 290 n 291 GLY 290 A GLY 291 n 292 GLY 291 A ILE 292 n 293 ILE 292 A GLU 293 n 294 GLU 293 A SER 294 n 295 SER 294 A GLU 295 n 296 GLU 295 A SER 296 n 297 SER 296 A THR 297 n 298 THR 297 A ASP 298 n 299 ASP 298 A ASP 299 n 300 ASP 299 A SER 300 n 301 SER 300 A LEU 301 n 302 LEU 301 A TYR 302 n 303 TYR 302 A VAL 303 n 304 VAL 303 A PHE 304 n 305 PHE 304 A LYS 305 n 306 LYS 305 A HIS 306 n 307 HIS 306 A VAL 307 n 308 VAL 307 A PHE 308 n 309 PHE 308 A VAL 309 n 310 VAL 309 A LYS 310 n 311 LYS 310 A ASP 311 n 312 ASP 311 A ALA 312 n 313 ALA 312 A PRO 313 n 314 PRO 313 A ARG 314 n 315 ARG 314 A GLU 315 n 316 GLU 315 A TYR 316 n 317 TYR 316 A ILE 317 n 318 ILE 317 A GLY 318 n 319 GLY 318 A GLU 319 n 320 GLU 319 A ILE 320 n 321 ILE 320 A ASP 321 n 322 ASP 321 A LYS 322 n 323 LYS 322 A VAL 323 n 324 VAL 323 A LEU 324 n 325 LEU 324 A ASP 325 n 326 ASP 325 A PRO 326 n 327 PRO 326 A GLU 327 n 328 GLU 327 A VAL 328 n 329 VAL 328 A TYR 329 n 330 TYR 329 A ALA 330 n 331 ALA 330 A GLU 331 n 332 GLU 331 A LEU 332 n 333 LEU 332 A VAL 333 n 334 VAL 333 A LYS 334 n 335 LYS 334 A ASP 335 n 336 ASP 335 A GLY 336 n 337 GLY 336 A ALA 337 n 338 HIS 337 A n 339 338 A n 340 339 A n 341 340 A n 342 341 A n 343 342 A UAG 1 n 1 ALA 3 B UAG 1 n 2 FGA 4 B CYS 3 n 3 CYS 5 B DAL 4 n 4 DAL 6 B DAL 5 n 5 DAL 7 B CR 7 n 1 C 8 C CR 8 n 2 C 9 C A9Z 6 n 3 A9Z 10 C author_and_software_defined_assembly PISA 3 trimeric 3630 -16 15040 C A9Z 10 C A9Z 3 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 44 A N VAL 45 A O MET 57 A O MET 58 A N GLY 62 A N GLY 63 A O PHE 70 A O PHE 71 A N ALA 73 A N ALA 74 A O ARG 106 A O ARG 107 A N LEU 105 A N LEU 106 A O LYS 322 A O LYS 323 A O ASP 321 A O ASP 322 A N VAL 127 A N VAL 128 A N HIS 184 A N HIS 185 A O VAL 232 A O VAL 233 A N PHE 231 A N PHE 232 A O GLY 243 A O GLY 244 A N LEU 246 A N LEU 247 A O TRP 253 A O TRP 254 A N TYR 254 A N TYR 255 A O ASP 288 A O ASP 289 A O TYR 287 A O TYR 288 A N LEU 150 A N LEU 151 A N ASN 147 A N ASN 148 A O ARG 314 A O ARG 315 1 A CG HIS 337 A CG HIS 338 1 Y 1 A ND1 HIS 337 A ND1 HIS 338 1 Y 1 A CD2 HIS 337 A CD2 HIS 338 1 Y 1 A CE1 HIS 337 A CE1 HIS 338 1 Y 1 A NE2 HIS 337 A NE2 HIS 338 1 Y 1 A MET 0 A MET 1 1 Y 1 A HIS 338 A HIS 339 1 Y 1 A HIS 339 A HIS 340 1 Y 1 A HIS 340 A HIS 341 1 Y 1 A HIS 341 A HIS 342 1 Y 1 A HIS 342 A HIS 343 1 Y 1 A A O O THR HOH 64 573 2.17 1 -5.14 0.80 121.30 116.16 A A A CG CD1 CE1 TYR TYR TYR 23 23 23 N 1 7.73 0.90 118.30 126.03 A A A CB CG OD1 ASP ASP ASP 88 88 88 N 1 3.64 0.50 120.30 123.94 A A A NE CZ NH1 ARG ARG ARG 89 89 89 N 1 -12.46 1.70 111.00 98.54 A A A CB CG CD2 LEU LEU LEU 90 90 90 N 1 -3.90 0.50 120.30 116.40 A A A NE CZ NH1 ARG ARG ARG 101 101 101 N 1 -3.28 0.50 120.30 117.02 A A A NE CZ NH2 ARG ARG ARG 145 145 145 N 1 13.22 1.70 113.30 126.52 A A A CA CB CG MET MET MET 202 202 202 N 1 -3.21 0.50 120.30 117.09 A A A NE CZ NH2 ARG ARG ARG 211 211 211 N 1 -11.97 1.20 119.70 107.73 C C C C3' O3' P C C A9Z 9 9 10 Y 1 10.77 1.10 110.50 121.27 C C C O3' P OP1 C A9Z A9Z 9 10 10 Y 1 A A CE2 CD2 TRP TRP 278 278 0.082 0.012 1.409 1.491 N 1 C C O3' P C A9Z 9 10 0.119 0.012 1.607 1.726 Y 1 A MET 79 172.16 -178.19 1 A ASN 130 -151.32 -102.40 1 A LEU 240 -120.24 -54.20 17.328 -0.95 0.00 0.41 -1.07 0.00 1.75 0.957 0.941 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.20935 0.17487 0.178 0.17661 1.66 38.12 2236 44718 42482 5.0 99.54 1.632 0.057 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.096 0.096 0.80 0.80 1.20 3GKR MAXIMUM LIKELIHOOD MASK 1.66 38.12 296 3140 49 68 2727 0.024 0.019 2924 2.342 1.987 3978 5.842 5.000 340 33.099 24.388 139 12.135 15.000 466 21.742 15.000 17 0.170 0.200 436 0.013 0.021 2209 0.300 0.270 1.703 158 3011 20 96.53 23.2 1.66 38.12 4II9 44718 44718 0 -3 0.04 1 23.8 3.7 99.5 0.189 1.66 1.76 6.9 7126 1 3.5 98.1 data collection MX Cube phasing PHASER refinement REFMAC 5.7.0032 data reduction XDS data scaling XSCALE Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N A ASP 7 A ASP 8 HELX_P A SER 21 A SER 22 1 1 15 A GLN 25 A GLN 26 HELX_P A ASP 29 A ASP 30 5 2 5 A LEU 30 A LEU 31 HELX_P A LYS 36 A LYS 37 1 3 7 A ASP 83 A ASP 84 HELX_P A ASP 99 A ASP 100 1 4 17 A SER 114 A SER 115 HELX_P A HIS 124 A HIS 125 1 5 11 A VAL 133 A VAL 134 HELX_P A THR 141 A THR 142 5 6 9 A THR 153 A THR 154 HELX_P A PHE 155 A PHE 156 5 7 3 A THR 160 A THR 161 HELX_P A TYR 165 A TYR 166 5 8 6 A PRO 166 A PRO 167 HELX_P A ASP 179 A ASP 180 1 9 14 A SER 188 A SER 189 HELX_P A GLY 207 A GLY 208 1 10 20 A PRO 212 A PRO 213 HELX_P A PHE 223 A PHE 224 1 11 12 A TYR 266 A TYR 267 HELX_P A THR 282 A THR 283 1 12 17 A ASP 299 A ASP 300 HELX_P A VAL 309 A VAL 310 1 13 11 A ASP 325 A ASP 326 HELX_P A VAL 333 A VAL 334 1 14 9 covale 1.353 both B ALA 3 B C ALA 1 1_555 B FGA 4 B N FGA 2 1_555 covale 1.378 one B ALA 3 B N ALA 1 1_555 B MUB 102 F C10 MUB 1_555 covale 1.411 both B FGA 4 B CD FGA 2 1_555 B CYS 5 B N CYS 3 1_555 covale 1.344 both B CYS 5 B C CYS 3 1_555 B DAL 6 B N DAL 4 1_555 covale 1.791 none B CYS 5 B SG CYS 3 1_555 C A9Z 10 C C7T A9Z 3 1_555 covale 1.356 both B DAL 6 B C DAL 4 1_555 B DAL 7 B N DAL 5 1_555 covale 1.620 both B UDP 101 E PB UDP 1_555 B MUB 102 F O1 MUB 1_555 covale 1.726 both C C 9 C O3' C 2 1_555 C A9Z 10 C P A9Z 3 1_555 TRANSFERASE/PEPTIDE/RNA FEMX, PEPTIDOGLYCAN, transferase, peptidyl-RNA conjugate complex, TRANSFERASE-PEPTIDE-RNA complex A GLY 76 A GLY 77 1 A PRO 77 A PRO 78 0.46 Q9EY50_LACVI UNP 1 1 Q9EY50 MPVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVM DVTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLDLTKFPDAK TTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKL LSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGE IDKVLDPEVYAELVKD 4II9 PDB 2 4II9 4II9 PDB 3 4II9 1 336 4II9 0 335 Q9EY50 A 1 1 336 3 7 4II9 3 7 4II9 B 2 1 5 8 10 4II9 8 10 4II9 C 3 1 3 1 expression tag GLY 336 4II9 A Q9EY50 UNP 337 1 expression tag HIS 337 4II9 A Q9EY50 UNP 338 1 expression tag HIS 338 4II9 A Q9EY50 UNP 339 1 expression tag HIS 339 4II9 A Q9EY50 UNP 340 1 expression tag HIS 340 4II9 A Q9EY50 UNP 341 1 expression tag HIS 341 4II9 A Q9EY50 UNP 342 1 expression tag HIS 342 4II9 A Q9EY50 UNP 343 6 7 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLU 40 A GLU 41 A GLU 47 A GLU 48 A ILE 53 A ILE 54 A GLY 62 A GLY 63 A LYS 69 A LYS 70 A ALA 73 A ALA 74 A ALA 102 A ALA 103 A PHE 107 A PHE 108 A GLU 319 A GLU 320 A VAL 323 A VAL 324 A VAL 127 A VAL 128 A ARG 129 A ARG 130 A VAL 181 A VAL 182 A GLY 186 A GLY 187 A MET 228 A MET 229 A ARG 235 A ARG 236 A LYS 238 A LYS 239 A TYR 248 A TYR 249 A LYS 251 A LYS 252 A SER 259 A SER 260 A LEU 286 A LEU 287 A ILE 292 A ILE 293 A LEU 146 A LEU 147 A ASP 151 A ASP 152 A ARG 314 A ARG 315 A GLU 315 A GLU 316 4 P 1 21 1