0.013166
0.000000
0.000000
0.000000
0.009277
0.000000
0.000000
0.000000
0.013721
0.000000
0.000000
0.000000
Brautigam, C.A.
Deka, R.K.
Norgard, M.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
75.955
107.790
72.881
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C17 H20 N4 O6
376.364
RIBOFLAVIN
RIBOFLAVINE; VITAMIN B2
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
K
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
S
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
NA
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
N
C
N
304
N
O
N
305
N
N
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
C
N
313
N
C
Y
314
N
C
N
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
N
N
319
N
C
N
320
N
C
N
321
S
C
N
322
N
O
N
323
S
C
N
324
N
O
N
325
R
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
R
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
N
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
Y
297
N
doub
Y
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
US
MBio
2150-7511
4
e00615
e00612
10.1128/mBio.00615-12
23404400
Evidence for an ABC-type riboflavin transporter system in pathogenic spirochetes.
2013
10.2210/pdb4iil/pdb
pdb_00004iil
100
1
CCD
2012-06-15
ADSC QUANTUM 315r
Si111
SINGLE WAVELENGTH
M
x-ray
1
0.97926
1.0
19-ID
APS
0.97926
SYNCHROTRON
APS BEAMLINE 19-ID
38475.898
Membrane lipoprotein TpN38(b)
1
man
polymer
376.364
RIBOFLAVIN
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
18.015
water
350
nat
water
no
no
MSGSHHHHHHSSGIEGRGRLIKHRPAVQDERAVRIAVFVPGFRHDSPVYAMLCDGVERAVTQERATGRSIGLDIIEAGPN
QALWREKLAHLAAEQRYRLIVSSNPALPHVLEPILRQFPLQRFLVLDAYAPQEHSLITFRYNQWEQAYLAGHLSALVSAS
AMRFANADKKIGLIAGQSYPVMTQTIIPAFLAGARAVDPAFEVDVRVVGNWYDAAKSADLARILFHEGVDVMMPICGGAN
QGVLAAARELGFYVSWFDDNGYARAPGYVVGSSVMEQERLAYEQTLRCIRGELPSAGAWTLGVKDGYVRFIEEDPLYLQT
VPEPIRVRQSALLRRIQSGELTLPVR
MSGSHHHHHHSSGIEGRGRLIKHRPAVQDERAVRIAVFVPGFRHDSPVYAMLCDGVERAVTQERATGRSIGLDIIEAGPN
QALWREKLAHLAAEQRYRLIVSSNPALPHVLEPILRQFPLQRFLVLDAYAPQEHSLITFRYNQWEQAYLAGHLSALVSAS
AMRFANADKKIGLIAGQSYPVMTQTIIPAFLAGARAVDPAFEVDVRVVGNWYDAAKSADLARILFHEGVDVMMPICGGAN
QGVLAAARELGFYVSWFDDNGYARAPGYVVGSSVMEQERLAYEQTLRCIRGELPSAGAWTLGVKDGYVRFIEEDPLYLQT
VPEPIRVRQSALLRRIQSGELTLPVR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Nichols
sample
tp0298, tpn38, TP_0298
243276
Treponema pallidum subsp. pallidum
511693
Escherichia coli
BL21 AI
plasmid
pIVEX2.4d
1
1.94
36.55
VAPOR DIFFUSION, HANGING DROP
0.2 M KSCN, 20% PEG3350, vapor diffusion, hanging drop, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
1
0
2013-02-27
1
1
2013-04-17
1
2
2017-11-15
1
3
2024-02-28
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-12-20
REL
REL
RBF
RIBOFLAVIN
NA
SODIUM ION
K
POTASSIUM ION
EDO
1,2-ETHANEDIOL
HOH
water
RBF
1
2
RBF
RBF
401
A
NA
1
3
NA
NA
402
A
NA
2
3
NA
NA
403
A
K
1
4
K
K
404
A
EDO
1
5
EDO
EDO
405
A
EDO
2
5
EDO
EDO
406
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
37
6
HOH
HOH
536
A
HOH
38
6
HOH
HOH
537
A
HOH
39
6
HOH
HOH
538
A
HOH
40
6
HOH
HOH
539
A
HOH
41
6
HOH
HOH
540
A
HOH
42
6
HOH
HOH
541
A
HOH
43
6
HOH
HOH
542
A
HOH
44
6
HOH
HOH
543
A
HOH
45
6
HOH
HOH
544
A
HOH
46
6
HOH
HOH
545
A
HOH
47
6
HOH
HOH
546
A
HOH
48
6
HOH
HOH
547
A
HOH
49
6
HOH
HOH
548
A
HOH
50
6
HOH
HOH
549
A
HOH
51
6
HOH
HOH
550
A
HOH
52
6
HOH
HOH
551
A
HOH
53
6
HOH
HOH
552
A
HOH
54
6
HOH
HOH
553
A
HOH
55
6
HOH
HOH
554
A
HOH
56
6
HOH
HOH
555
A
HOH
57
6
HOH
HOH
556
A
HOH
58
6
HOH
HOH
557
A
HOH
59
6
HOH
HOH
558
A
HOH
60
6
HOH
HOH
559
A
HOH
61
6
HOH
HOH
560
A
HOH
62
6
HOH
HOH
561
A
HOH
63
6
HOH
HOH
562
A
HOH
64
6
HOH
HOH
563
A
HOH
65
6
HOH
HOH
564
A
HOH
66
6
HOH
HOH
565
A
HOH
67
6
HOH
HOH
566
A
HOH
68
6
HOH
HOH
567
A
HOH
69
6
HOH
HOH
568
A
HOH
70
6
HOH
HOH
569
A
HOH
71
6
HOH
HOH
570
A
HOH
72
6
HOH
HOH
571
A
HOH
73
6
HOH
HOH
572
A
HOH
74
6
HOH
HOH
573
A
HOH
75
6
HOH
HOH
574
A
HOH
76
6
HOH
HOH
575
A
HOH
77
6
HOH
HOH
576
A
HOH
78
6
HOH
HOH
577
A
HOH
79
6
HOH
HOH
578
A
HOH
80
6
HOH
HOH
579
A
HOH
82
6
HOH
HOH
580
A
HOH
83
6
HOH
HOH
581
A
HOH
84
6
HOH
HOH
582
A
HOH
85
6
HOH
HOH
583
A
HOH
86
6
HOH
HOH
584
A
HOH
88
6
HOH
HOH
585
A
HOH
89
6
HOH
HOH
586
A
HOH
90
6
HOH
HOH
587
A
HOH
91
6
HOH
HOH
588
A
HOH
92
6
HOH
HOH
589
A
HOH
93
6
HOH
HOH
590
A
HOH
94
6
HOH
HOH
591
A
HOH
95
6
HOH
HOH
592
A
HOH
96
6
HOH
HOH
593
A
HOH
97
6
HOH
HOH
594
A
HOH
98
6
HOH
HOH
595
A
HOH
99
6
HOH
HOH
596
A
HOH
100
6
HOH
HOH
597
A
HOH
101
6
HOH
HOH
598
A
HOH
102
6
HOH
HOH
599
A
HOH
103
6
HOH
HOH
600
A
HOH
104
6
HOH
HOH
601
A
HOH
106
6
HOH
HOH
602
A
HOH
107
6
HOH
HOH
603
A
HOH
108
6
HOH
HOH
604
A
HOH
109
6
HOH
HOH
605
A
HOH
110
6
HOH
HOH
606
A
HOH
111
6
HOH
HOH
607
A
HOH
112
6
HOH
HOH
608
A
HOH
113
6
HOH
HOH
609
A
HOH
114
6
HOH
HOH
610
A
HOH
115
6
HOH
HOH
611
A
HOH
116
6
HOH
HOH
612
A
HOH
117
6
HOH
HOH
613
A
HOH
118
6
HOH
HOH
614
A
HOH
119
6
HOH
HOH
615
A
HOH
120
6
HOH
HOH
616
A
HOH
121
6
HOH
HOH
617
A
HOH
122
6
HOH
HOH
618
A
HOH
124
6
HOH
HOH
619
A
HOH
125
6
HOH
HOH
620
A
HOH
126
6
HOH
HOH
621
A
HOH
127
6
HOH
HOH
622
A
HOH
128
6
HOH
HOH
623
A
HOH
129
6
HOH
HOH
624
A
HOH
130
6
HOH
HOH
625
A
HOH
131
6
HOH
HOH
626
A
HOH
132
6
HOH
HOH
627
A
HOH
133
6
HOH
HOH
628
A
HOH
134
6
HOH
HOH
629
A
HOH
135
6
HOH
HOH
630
A
HOH
136
6
HOH
HOH
631
A
HOH
137
6
HOH
HOH
632
A
HOH
138
6
HOH
HOH
633
A
HOH
139
6
HOH
HOH
634
A
HOH
140
6
HOH
HOH
635
A
HOH
141
6
HOH
HOH
636
A
HOH
142
6
HOH
HOH
637
A
HOH
143
6
HOH
HOH
638
A
HOH
144
6
HOH
HOH
639
A
HOH
145
6
HOH
HOH
640
A
HOH
146
6
HOH
HOH
641
A
HOH
147
6
HOH
HOH
642
A
HOH
148
6
HOH
HOH
643
A
HOH
149
6
HOH
HOH
644
A
HOH
150
6
HOH
HOH
645
A
HOH
151
6
HOH
HOH
646
A
HOH
152
6
HOH
HOH
647
A
HOH
153
6
HOH
HOH
648
A
HOH
154
6
HOH
HOH
649
A
HOH
155
6
HOH
HOH
650
A
HOH
156
6
HOH
HOH
651
A
HOH
157
6
HOH
HOH
652
A
HOH
158
6
HOH
HOH
653
A
HOH
159
6
HOH
HOH
654
A
HOH
160
6
HOH
HOH
655
A
HOH
161
6
HOH
HOH
656
A
HOH
162
6
HOH
HOH
657
A
HOH
164
6
HOH
HOH
658
A
HOH
166
6
HOH
HOH
659
A
HOH
167
6
HOH
HOH
660
A
HOH
168
6
HOH
HOH
661
A
HOH
169
6
HOH
HOH
662
A
HOH
170
6
HOH
HOH
663
A
HOH
171
6
HOH
HOH
664
A
HOH
172
6
HOH
HOH
665
A
HOH
173
6
HOH
HOH
666
A
HOH
174
6
HOH
HOH
667
A
HOH
175
6
HOH
HOH
668
A
HOH
176
6
HOH
HOH
669
A
HOH
177
6
HOH
HOH
670
A
HOH
178
6
HOH
HOH
671
A
HOH
179
6
HOH
HOH
672
A
HOH
180
6
HOH
HOH
673
A
HOH
181
6
HOH
HOH
674
A
HOH
182
6
HOH
HOH
675
A
HOH
183
6
HOH
HOH
676
A
HOH
185
6
HOH
HOH
677
A
HOH
186
6
HOH
HOH
678
A
HOH
187
6
HOH
HOH
679
A
HOH
188
6
HOH
HOH
680
A
HOH
189
6
HOH
HOH
681
A
HOH
190
6
HOH
HOH
682
A
HOH
191
6
HOH
HOH
683
A
HOH
193
6
HOH
HOH
684
A
HOH
194
6
HOH
HOH
685
A
HOH
195
6
HOH
HOH
686
A
HOH
196
6
HOH
HOH
687
A
HOH
198
6
HOH
HOH
688
A
HOH
199
6
HOH
HOH
689
A
HOH
200
6
HOH
HOH
690
A
HOH
201
6
HOH
HOH
691
A
HOH
202
6
HOH
HOH
692
A
HOH
203
6
HOH
HOH
693
A
HOH
204
6
HOH
HOH
694
A
HOH
205
6
HOH
HOH
695
A
HOH
206
6
HOH
HOH
696
A
HOH
207
6
HOH
HOH
697
A
HOH
208
6
HOH
HOH
698
A
HOH
209
6
HOH
HOH
699
A
HOH
211
6
HOH
HOH
700
A
HOH
213
6
HOH
HOH
701
A
HOH
214
6
HOH
HOH
702
A
HOH
215
6
HOH
HOH
703
A
HOH
216
6
HOH
HOH
704
A
HOH
217
6
HOH
HOH
705
A
HOH
218
6
HOH
HOH
706
A
HOH
221
6
HOH
HOH
707
A
HOH
222
6
HOH
HOH
708
A
HOH
224
6
HOH
HOH
709
A
HOH
225
6
HOH
HOH
710
A
HOH
226
6
HOH
HOH
711
A
HOH
227
6
HOH
HOH
712
A
HOH
228
6
HOH
HOH
713
A
HOH
230
6
HOH
HOH
714
A
HOH
231
6
HOH
HOH
715
A
HOH
232
6
HOH
HOH
716
A
HOH
233
6
HOH
HOH
717
A
HOH
234
6
HOH
HOH
718
A
HOH
235
6
HOH
HOH
719
A
HOH
236
6
HOH
HOH
720
A
HOH
237
6
HOH
HOH
721
A
HOH
238
6
HOH
HOH
722
A
HOH
239
6
HOH
HOH
723
A
HOH
241
6
HOH
HOH
724
A
HOH
242
6
HOH
HOH
725
A
HOH
243
6
HOH
HOH
726
A
HOH
244
6
HOH
HOH
727
A
HOH
245
6
HOH
HOH
728
A
HOH
246
6
HOH
HOH
729
A
HOH
247
6
HOH
HOH
730
A
HOH
248
6
HOH
HOH
731
A
HOH
249
6
HOH
HOH
732
A
HOH
251
6
HOH
HOH
733
A
HOH
252
6
HOH
HOH
734
A
HOH
254
6
HOH
HOH
735
A
HOH
256
6
HOH
HOH
736
A
HOH
257
6
HOH
HOH
737
A
HOH
258
6
HOH
HOH
738
A
HOH
259
6
HOH
HOH
739
A
HOH
260
6
HOH
HOH
740
A
HOH
261
6
HOH
HOH
741
A
HOH
262
6
HOH
HOH
742
A
HOH
263
6
HOH
HOH
743
A
HOH
264
6
HOH
HOH
744
A
HOH
265
6
HOH
HOH
745
A
HOH
266
6
HOH
HOH
746
A
HOH
267
6
HOH
HOH
747
A
HOH
268
6
HOH
HOH
748
A
HOH
269
6
HOH
HOH
749
A
HOH
270
6
HOH
HOH
750
A
HOH
271
6
HOH
HOH
751
A
HOH
272
6
HOH
HOH
752
A
HOH
273
6
HOH
HOH
753
A
HOH
275
6
HOH
HOH
754
A
HOH
276
6
HOH
HOH
755
A
HOH
277
6
HOH
HOH
756
A
HOH
278
6
HOH
HOH
757
A
HOH
279
6
HOH
HOH
758
A
HOH
281
6
HOH
HOH
759
A
HOH
282
6
HOH
HOH
760
A
HOH
283
6
HOH
HOH
761
A
HOH
285
6
HOH
HOH
762
A
HOH
286
6
HOH
HOH
763
A
HOH
287
6
HOH
HOH
764
A
HOH
288
6
HOH
HOH
765
A
HOH
289
6
HOH
HOH
766
A
HOH
290
6
HOH
HOH
767
A
HOH
291
6
HOH
HOH
768
A
HOH
292
6
HOH
HOH
769
A
HOH
294
6
HOH
HOH
770
A
HOH
295
6
HOH
HOH
771
A
HOH
296
6
HOH
HOH
772
A
HOH
298
6
HOH
HOH
773
A
HOH
299
6
HOH
HOH
774
A
HOH
300
6
HOH
HOH
775
A
HOH
302
6
HOH
HOH
776
A
HOH
304
6
HOH
HOH
777
A
HOH
305
6
HOH
HOH
778
A
HOH
306
6
HOH
HOH
779
A
HOH
307
6
HOH
HOH
780
A
HOH
308
6
HOH
HOH
781
A
HOH
309
6
HOH
HOH
782
A
HOH
310
6
HOH
HOH
783
A
HOH
311
6
HOH
HOH
784
A
HOH
312
6
HOH
HOH
785
A
HOH
313
6
HOH
HOH
786
A
HOH
314
6
HOH
HOH
787
A
HOH
315
6
HOH
HOH
788
A
HOH
316
6
HOH
HOH
789
A
HOH
317
6
HOH
HOH
790
A
HOH
318
6
HOH
HOH
791
A
HOH
319
6
HOH
HOH
792
A
HOH
320
6
HOH
HOH
793
A
HOH
321
6
HOH
HOH
794
A
HOH
322
6
HOH
HOH
795
A
HOH
323
6
HOH
HOH
796
A
HOH
324
6
HOH
HOH
797
A
HOH
325
6
HOH
HOH
798
A
HOH
326
6
HOH
HOH
799
A
HOH
327
6
HOH
HOH
800
A
HOH
328
6
HOH
HOH
801
A
HOH
330
6
HOH
HOH
802
A
HOH
331
6
HOH
HOH
803
A
HOH
332
6
HOH
HOH
804
A
HOH
333
6
HOH
HOH
805
A
HOH
334
6
HOH
HOH
806
A
HOH
335
6
HOH
HOH
807
A
HOH
336
6
HOH
HOH
808
A
HOH
340
6
HOH
HOH
809
A
HOH
341
6
HOH
HOH
810
A
HOH
342
6
HOH
HOH
811
A
HOH
343
6
HOH
HOH
812
A
HOH
344
6
HOH
HOH
813
A
HOH
347
6
HOH
HOH
814
A
HOH
348
6
HOH
HOH
815
A
HOH
349
6
HOH
HOH
816
A
HOH
352
6
HOH
HOH
817
A
HOH
355
6
HOH
HOH
818
A
HOH
356
6
HOH
HOH
819
A
HOH
357
6
HOH
HOH
820
A
HOH
361
6
HOH
HOH
821
A
HOH
364
6
HOH
HOH
822
A
HOH
365
6
HOH
HOH
823
A
HOH
368
6
HOH
HOH
824
A
HOH
369
6
HOH
HOH
825
A
HOH
370
6
HOH
HOH
826
A
HOH
371
6
HOH
HOH
827
A
HOH
372
6
HOH
HOH
828
A
HOH
373
6
HOH
HOH
829
A
HOH
374
6
HOH
HOH
830
A
HOH
375
6
HOH
HOH
831
A
HOH
377
6
HOH
HOH
832
A
HOH
378
6
HOH
HOH
833
A
HOH
379
6
HOH
HOH
834
A
HOH
380
6
HOH
HOH
835
A
HOH
381
6
HOH
HOH
836
A
HOH
383
6
HOH
HOH
837
A
HOH
384
6
HOH
HOH
838
A
HOH
386
6
HOH
HOH
839
A
HOH
387
6
HOH
HOH
840
A
HOH
389
6
HOH
HOH
841
A
HOH
390
6
HOH
HOH
842
A
HOH
392
6
HOH
HOH
843
A
HOH
393
6
HOH
HOH
844
A
HOH
394
6
HOH
HOH
845
A
HOH
395
6
HOH
HOH
846
A
HOH
401
6
HOH
HOH
847
A
HOH
402
6
HOH
HOH
848
A
HOH
403
6
HOH
HOH
849
A
HOH
404
6
HOH
HOH
850
A
n
1
-21
A
n
2
-20
A
n
3
-19
A
n
4
-18
A
n
5
-17
A
n
6
-16
A
n
7
-15
A
n
8
-14
A
n
9
-13
A
n
10
-12
A
n
11
-11
A
n
12
-10
A
n
13
-9
A
n
14
-8
A
n
15
-7
A
n
16
-6
A
n
17
-5
A
n
18
-4
A
n
19
-3
A
n
20
-2
A
n
21
-1
A
n
22
0
A
n
23
1
A
n
24
2
A
n
25
3
A
n
26
4
A
n
27
5
A
n
28
6
A
n
29
7
A
n
30
8
A
ARG
9
n
31
ARG
9
A
ALA
10
n
32
ALA
10
A
VAL
11
n
33
VAL
11
A
ARG
12
n
34
ARG
12
A
ILE
13
n
35
ILE
13
A
ALA
14
n
36
ALA
14
A
VAL
15
n
37
VAL
15
A
PHE
16
n
38
PHE
16
A
VAL
17
n
39
VAL
17
A
PRO
18
n
40
PRO
18
A
GLY
19
n
41
GLY
19
A
PHE
20
n
42
PHE
20
A
ARG
21
n
43
ARG
21
A
HIS
22
n
44
HIS
22
A
ASP
23
n
45
ASP
23
A
SER
24
n
46
SER
24
A
PRO
25
n
47
PRO
25
A
VAL
26
n
48
VAL
26
A
TYR
27
n
49
TYR
27
A
ALA
28
n
50
ALA
28
A
MET
29
n
51
MET
29
A
LEU
30
n
52
LEU
30
A
CYS
31
n
53
CYS
31
A
ASP
32
n
54
ASP
32
A
GLY
33
n
55
GLY
33
A
VAL
34
n
56
VAL
34
A
GLU
35
n
57
GLU
35
A
ARG
36
n
58
ARG
36
A
ALA
37
n
59
ALA
37
A
VAL
38
n
60
VAL
38
A
THR
39
n
61
THR
39
A
GLN
40
n
62
GLN
40
A
GLU
41
n
63
GLU
41
A
ARG
42
n
64
ARG
42
A
ALA
43
n
65
ALA
43
A
THR
44
n
66
THR
44
A
GLY
45
n
67
GLY
45
A
ARG
46
n
68
ARG
46
A
SER
47
n
69
SER
47
A
ILE
48
n
70
ILE
48
A
GLY
49
n
71
GLY
49
A
LEU
50
n
72
LEU
50
A
ASP
51
n
73
ASP
51
A
ILE
52
n
74
ILE
52
A
ILE
53
n
75
ILE
53
A
GLU
54
n
76
GLU
54
A
ALA
55
n
77
ALA
55
A
GLY
56
n
78
GLY
56
A
PRO
57
n
79
PRO
57
A
ASN
58
n
80
ASN
58
A
GLN
59
n
81
GLN
59
A
ALA
60
n
82
ALA
60
A
LEU
61
n
83
LEU
61
A
TRP
62
n
84
TRP
62
A
ARG
63
n
85
ARG
63
A
GLU
64
n
86
GLU
64
A
LYS
65
n
87
LYS
65
A
LEU
66
n
88
LEU
66
A
ALA
67
n
89
ALA
67
A
HIS
68
n
90
HIS
68
A
LEU
69
n
91
LEU
69
A
ALA
70
n
92
ALA
70
A
ALA
71
n
93
ALA
71
A
GLU
72
n
94
GLU
72
A
GLN
73
n
95
GLN
73
A
ARG
74
n
96
ARG
74
A
TYR
75
n
97
TYR
75
A
ARG
76
n
98
ARG
76
A
LEU
77
n
99
LEU
77
A
ILE
78
n
100
ILE
78
A
VAL
79
n
101
VAL
79
A
SER
80
n
102
SER
80
A
SER
81
n
103
SER
81
A
ASN
82
n
104
ASN
82
A
PRO
83
n
105
PRO
83
A
ALA
84
n
106
ALA
84
A
LEU
85
n
107
LEU
85
A
PRO
86
n
108
PRO
86
A
HIS
87
n
109
HIS
87
A
VAL
88
n
110
VAL
88
A
LEU
89
n
111
LEU
89
A
GLU
90
n
112
GLU
90
A
PRO
91
n
113
PRO
91
A
ILE
92
n
114
ILE
92
A
LEU
93
n
115
LEU
93
A
ARG
94
n
116
ARG
94
A
GLN
95
n
117
GLN
95
A
PHE
96
n
118
PHE
96
A
PRO
97
n
119
PRO
97
A
LEU
98
n
120
LEU
98
A
GLN
99
n
121
GLN
99
A
ARG
100
n
122
ARG
100
A
PHE
101
n
123
PHE
101
A
LEU
102
n
124
LEU
102
A
VAL
103
n
125
VAL
103
A
LEU
104
n
126
LEU
104
A
ASP
105
n
127
ASP
105
A
ALA
106
n
128
ALA
106
A
TYR
107
n
129
TYR
107
A
ALA
108
n
130
ALA
108
A
PRO
109
n
131
PRO
109
A
GLN
110
n
132
GLN
110
A
GLU
111
n
133
GLU
111
A
HIS
112
n
134
HIS
112
A
SER
113
n
135
SER
113
A
LEU
114
n
136
LEU
114
A
ILE
115
n
137
ILE
115
A
THR
116
n
138
THR
116
A
PHE
117
n
139
PHE
117
A
ARG
118
n
140
ARG
118
A
TYR
119
n
141
TYR
119
A
ASN
120
n
142
ASN
120
A
GLN
121
n
143
GLN
121
A
TRP
122
n
144
TRP
122
A
GLU
123
n
145
GLU
123
A
GLN
124
n
146
GLN
124
A
ALA
125
n
147
ALA
125
A
TYR
126
n
148
TYR
126
A
LEU
127
n
149
LEU
127
A
ALA
128
n
150
ALA
128
A
GLY
129
n
151
GLY
129
A
HIS
130
n
152
HIS
130
A
LEU
131
n
153
LEU
131
A
SER
132
n
154
SER
132
A
ALA
133
n
155
ALA
133
A
LEU
134
n
156
LEU
134
A
VAL
135
n
157
VAL
135
A
SER
136
n
158
SER
136
A
ALA
137
n
159
ALA
137
A
SER
138
n
160
SER
138
A
ALA
139
n
161
ALA
139
A
MET
140
n
162
MET
140
A
ARG
141
n
163
ARG
141
A
PHE
142
n
164
PHE
142
A
ALA
143
n
165
ALA
143
A
ASN
144
n
166
ASN
144
A
ALA
145
n
167
ALA
145
A
ASP
146
n
168
ASP
146
A
LYS
147
n
169
LYS
147
A
LYS
148
n
170
LYS
148
A
ILE
149
n
171
ILE
149
A
GLY
150
n
172
GLY
150
A
LEU
151
n
173
LEU
151
A
ILE
152
n
174
ILE
152
A
ALA
153
n
175
ALA
153
A
GLY
154
n
176
GLY
154
A
GLN
155
n
177
GLN
155
A
SER
156
n
178
SER
156
A
TYR
157
n
179
TYR
157
A
PRO
158
n
180
PRO
158
A
VAL
159
n
181
VAL
159
A
MET
160
n
182
MET
160
A
THR
161
n
183
THR
161
A
GLN
162
n
184
GLN
162
A
THR
163
n
185
THR
163
A
ILE
164
n
186
ILE
164
A
ILE
165
n
187
ILE
165
A
PRO
166
n
188
PRO
166
A
ALA
167
n
189
ALA
167
A
PHE
168
n
190
PHE
168
A
LEU
169
n
191
LEU
169
A
ALA
170
n
192
ALA
170
A
GLY
171
n
193
GLY
171
A
ALA
172
n
194
ALA
172
A
ARG
173
n
195
ARG
173
A
ALA
174
n
196
ALA
174
A
VAL
175
n
197
VAL
175
A
ASP
176
n
198
ASP
176
A
PRO
177
n
199
PRO
177
A
ALA
178
n
200
ALA
178
A
PHE
179
n
201
PHE
179
A
GLU
180
n
202
GLU
180
A
VAL
181
n
203
VAL
181
A
ASP
182
n
204
ASP
182
A
VAL
183
n
205
VAL
183
A
ARG
184
n
206
ARG
184
A
VAL
185
n
207
VAL
185
A
VAL
186
n
208
VAL
186
A
GLY
187
n
209
GLY
187
A
ASN
188
n
210
ASN
188
A
TRP
189
n
211
TRP
189
A
TYR
190
n
212
TYR
190
A
ASP
191
n
213
ASP
191
A
ALA
192
n
214
ALA
192
A
ALA
193
n
215
ALA
193
A
LYS
194
n
216
LYS
194
A
SER
195
n
217
SER
195
A
ALA
196
n
218
ALA
196
A
ASP
197
n
219
ASP
197
A
LEU
198
n
220
LEU
198
A
ALA
199
n
221
ALA
199
A
ARG
200
n
222
ARG
200
A
ILE
201
n
223
ILE
201
A
LEU
202
n
224
LEU
202
A
PHE
203
n
225
PHE
203
A
HIS
204
n
226
HIS
204
A
GLU
205
n
227
GLU
205
A
GLY
206
n
228
GLY
206
A
VAL
207
n
229
VAL
207
A
ASP
208
n
230
ASP
208
A
VAL
209
n
231
VAL
209
A
MET
210
n
232
MET
210
A
MET
211
n
233
MET
211
A
PRO
212
n
234
PRO
212
A
ILE
213
n
235
ILE
213
A
CYS
214
n
236
CYS
214
A
GLY
215
n
237
GLY
215
A
GLY
216
n
238
GLY
216
A
ALA
217
n
239
ALA
217
A
ASN
218
n
240
ASN
218
A
GLN
219
n
241
GLN
219
A
GLY
220
n
242
GLY
220
A
VAL
221
n
243
VAL
221
A
LEU
222
n
244
LEU
222
A
ALA
223
n
245
ALA
223
A
ALA
224
n
246
ALA
224
A
ALA
225
n
247
ALA
225
A
ARG
226
n
248
ARG
226
A
GLU
227
n
249
GLU
227
A
LEU
228
n
250
LEU
228
A
GLY
229
n
251
GLY
229
A
PHE
230
n
252
PHE
230
A
TYR
231
n
253
TYR
231
A
VAL
232
n
254
VAL
232
A
SER
233
n
255
SER
233
A
TRP
234
n
256
TRP
234
A
PHE
235
n
257
PHE
235
A
ASP
236
n
258
ASP
236
A
ASP
237
n
259
ASP
237
A
ASN
238
n
260
ASN
238
A
GLY
239
n
261
GLY
239
A
TYR
240
n
262
TYR
240
A
ALA
241
n
263
ALA
241
A
ARG
242
n
264
ARG
242
A
ALA
243
n
265
ALA
243
A
PRO
244
n
266
PRO
244
A
GLY
245
n
267
GLY
245
A
TYR
246
n
268
TYR
246
A
VAL
247
n
269
VAL
247
A
VAL
248
n
270
VAL
248
A
GLY
249
n
271
GLY
249
A
SER
250
n
272
SER
250
A
SER
251
n
273
SER
251
A
VAL
252
n
274
VAL
252
A
MET
253
n
275
MET
253
A
GLU
254
n
276
GLU
254
A
GLN
255
n
277
GLN
255
A
GLU
256
n
278
GLU
256
A
ARG
257
n
279
ARG
257
A
LEU
258
n
280
LEU
258
A
ALA
259
n
281
ALA
259
A
TYR
260
n
282
TYR
260
A
GLU
261
n
283
GLU
261
A
GLN
262
n
284
GLN
262
A
THR
263
n
285
THR
263
A
LEU
264
n
286
LEU
264
A
ARG
265
n
287
ARG
265
A
CYS
266
n
288
CYS
266
A
ILE
267
n
289
ILE
267
A
ARG
268
n
290
ARG
268
A
GLY
269
n
291
GLY
269
A
GLU
270
n
292
GLU
270
A
LEU
271
n
293
LEU
271
A
PRO
272
n
294
PRO
272
A
SER
273
n
295
SER
273
A
ALA
274
n
296
ALA
274
A
GLY
275
n
297
GLY
275
A
ALA
276
n
298
ALA
276
A
TRP
277
n
299
TRP
277
A
THR
278
n
300
THR
278
A
LEU
279
n
301
LEU
279
A
GLY
280
n
302
GLY
280
A
VAL
281
n
303
VAL
281
A
LYS
282
n
304
LYS
282
A
ASP
283
n
305
ASP
283
A
GLY
284
n
306
GLY
284
A
TYR
285
n
307
TYR
285
A
VAL
286
n
308
VAL
286
A
ARG
287
n
309
ARG
287
A
PHE
288
n
310
PHE
288
A
ILE
289
n
311
ILE
289
A
GLU
290
n
312
GLU
290
A
GLU
291
n
313
GLU
291
A
ASP
292
n
314
ASP
292
A
PRO
293
n
315
PRO
293
A
LEU
294
n
316
LEU
294
A
TYR
295
n
317
TYR
295
A
LEU
296
n
318
LEU
296
A
GLN
297
n
319
GLN
297
A
THR
298
n
320
THR
298
A
VAL
299
n
321
VAL
299
A
PRO
300
n
322
PRO
300
A
GLU
301
n
323
GLU
301
A
PRO
302
n
324
PRO
302
A
ILE
303
n
325
ILE
303
A
ARG
304
n
326
ARG
304
A
VAL
305
n
327
VAL
305
A
ARG
306
n
328
ARG
306
A
GLN
307
n
329
GLN
307
A
SER
308
n
330
SER
308
A
ALA
309
n
331
ALA
309
A
LEU
310
n
332
LEU
310
A
LEU
311
n
333
LEU
311
A
ARG
312
n
334
ARG
312
A
ARG
313
n
335
ARG
313
A
ILE
314
n
336
ILE
314
A
GLN
315
n
337
GLN
315
A
SER
316
n
338
SER
316
A
GLY
317
n
339
GLY
317
A
GLU
318
n
340
GLU
318
A
LEU
319
n
341
LEU
319
A
THR
320
n
342
THR
320
A
LEU
321
n
343
LEU
321
A
PRO
322
n
344
PRO
322
A
n
345
323
A
n
346
324
A
author_and_software_defined_assembly
PISA
1
monomeric
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
SER
136
A
OG
SER
158
1_555
76.7
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASN
144
A
O
ASN
166
1_555
80.1
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASN
144
A
O
ASN
166
1_555
156.6
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASN
144
A
OD1
ASN
166
1_555
144.0
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASN
144
A
OD1
ASN
166
1_555
134.0
A
ASN
144
A
O
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
ASN
144
A
OD1
ASN
166
1_555
67.1
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
146
A
O
ASP
168
1_555
109.1
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
146
A
O
ASP
168
1_555
101.5
A
ASN
144
A
O
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
146
A
O
ASP
168
1_555
88.9
A
ASN
144
A
OD1
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
146
A
O
ASP
168
1_555
85.5
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
208
A
OD2
ASP
230
1_555
90.1
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
208
A
OD2
ASP
230
1_555
82.3
A
ASN
144
A
O
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
208
A
OD2
ASP
230
1_555
94.8
A
ASN
144
A
OD1
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
208
A
OD2
ASP
230
1_555
78.7
A
ASP
146
A
O
ASP
168
1_555
A
NA
402
C
NA
NA
1_555
A
ASP
208
A
OD2
ASP
230
1_555
160.9
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
152.6
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
75.9
A
ASN
144
A
O
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
127.3
A
ASN
144
A
OD1
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
61.4
A
ASP
146
A
O
ASP
168
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
76.9
A
ASP
208
A
OD2
ASP
230
1_555
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
86.0
A
SER
136
A
O
SER
158
1_555
A
NA
403
D
NA
NA
1_555
A
SER
138
A
O
SER
160
1_555
95.1
A
SER
136
A
O
SER
158
1_555
A
NA
403
D
NA
NA
1_555
A
ASN
144
A
O
ASN
166
1_555
71.7
A
SER
138
A
O
SER
160
1_555
A
NA
403
D
NA
NA
1_555
A
ASN
144
A
O
ASN
166
1_555
130.0
A
SER
136
A
O
SER
158
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
532
H
O
HOH
1_555
72.6
A
SER
138
A
O
SER
160
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
532
H
O
HOH
1_555
147.6
A
ASN
144
A
O
ASN
166
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
532
H
O
HOH
1_555
75.5
A
SER
136
A
O
SER
158
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
781
H
O
HOH
1_555
133.8
A
SER
138
A
O
SER
160
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
781
H
O
HOH
1_555
76.9
A
ASN
144
A
O
ASN
166
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
781
H
O
HOH
1_555
79.2
A
HOH
532
H
O
HOH
1_555
A
NA
403
D
NA
NA
1_555
A
HOH
781
H
O
HOH
1_555
133.1
A
THR
161
A
A
OG1
THR
183
1_555
A
K
404
E
K
K
1_555
A
HOH
630
H
O
HOH
1_555
75.7
A
THR
161
A
A
OG1
THR
183
1_555
A
K
404
E
K
K
1_555
A
HOH
690
H
O
HOH
1_555
142.0
A
HOH
630
H
O
HOH
1_555
A
K
404
E
K
K
1_555
A
HOH
690
H
O
HOH
1_555
112.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
53
A
O
ILE
75
A
N
VAL
17
A
N
VAL
39
A
N
PHE
16
A
N
PHE
38
A
O
VAL
79
A
O
VAL
101
A
N
SER
80
A
N
SER
102
A
O
LEU
102
A
O
LEU
124
A
N
VAL
103
A
N
VAL
125
A
O
ILE
115
A
O
ILE
137
A
N
ARG
118
A
N
ARG
140
A
O
TRP
277
A
O
TRP
299
A
O
ARG
184
A
O
ARG
206
A
N
ALA
153
A
N
ALA
175
A
N
ILE
152
A
N
ILE
174
A
O
ILE
213
A
O
ILE
235
A
N
MET
210
A
N
MET
232
A
O
TYR
231
A
O
TYR
253
A
N
TRP
234
A
N
TRP
256
A
O
GLY
249
A
O
GLY
271
A
N
VAL
252
A
N
VAL
274
A
O
ARG
287
A
O
ARG
309
1
A
HOH
641
H
HOH
1
A
MET
-21
A
MET
1
1
Y
1
A
SER
-20
A
SER
2
1
Y
1
A
GLY
-19
A
GLY
3
1
Y
1
A
SER
-18
A
SER
4
1
Y
1
A
HIS
-17
A
HIS
5
1
Y
1
A
HIS
-16
A
HIS
6
1
Y
1
A
HIS
-15
A
HIS
7
1
Y
1
A
HIS
-14
A
HIS
8
1
Y
1
A
HIS
-13
A
HIS
9
1
Y
1
A
HIS
-12
A
HIS
10
1
Y
1
A
SER
-11
A
SER
11
1
Y
1
A
SER
-10
A
SER
12
1
Y
1
A
GLY
-9
A
GLY
13
1
Y
1
A
ILE
-8
A
ILE
14
1
Y
1
A
GLU
-7
A
GLU
15
1
Y
1
A
GLY
-6
A
GLY
16
1
Y
1
A
ARG
-5
A
ARG
17
1
Y
1
A
GLY
-4
A
GLY
18
1
Y
1
A
ARG
-3
A
ARG
19
1
Y
1
A
LEU
-2
A
LEU
20
1
Y
1
A
ILE
-1
A
ILE
21
1
Y
1
A
LYS
0
A
LYS
22
1
Y
1
A
HIS
1
A
HIS
23
1
Y
1
A
ARG
2
A
ARG
24
1
Y
1
A
PRO
3
A
PRO
25
1
Y
1
A
ALA
4
A
ALA
26
1
Y
1
A
VAL
5
A
VAL
27
1
Y
1
A
GLN
6
A
GLN
28
1
Y
1
A
ASP
7
A
ASP
29
1
Y
1
A
GLU
8
A
GLU
30
1
Y
1
A
VAL
323
A
VAL
345
1
Y
1
A
ARG
324
A
ARG
346
1
Y
1
-4.09
0.50
120.30
116.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
9
9
9
A
A
A
N
1
3.52
0.50
120.30
123.82
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
12
12
12
A
A
A
N
1
A
ASN
82
109.99
149.66
1
A
LYS
147
-119.87
61.40
1
A
CYS
214
-143.24
30.28
1
A
ASP
236
84.95
-52.29
1
A
ALA
243
-156.17
80.04
47.240
15.3787
3.860
0.1528
0.1206
0.1222
1.3
26.2940
3698
73351
5.0400
99.5500
1.000
0.160
0.1100
RANDOM
1
1.340
SAD
12.9300
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.3
26.2940
350
2844
38
0
2456
0.008
2754
1.295
3772
0.075
403
0.007
501
12.757
1019
0.2804
0.2334
1.3165
119
2412
2531
26
91.0000
0.2234
0.1810
1.3345
157
2635
2792
26
99.0000
0.2062
0.1455
1.3535
153
2647
2800
26
100.0000
0.1838
0.1290
1.3738
141
2676
2817
26
100.0000
0.1741
0.1245
1.3952
139
2654
2793
26
100.0000
0.1841
0.1210
1.4181
136
2675
2811
26
100.0000
0.1678
0.1175
1.4425
116
2713
2829
26
100.0000
0.1534
0.1141
1.4688
126
2671
2797
26
100.0000
0.1565
0.1138
1.4970
136
2671
2807
26
100.0000
0.1365
0.0940
1.5276
132
2679
2811
26
100.0000
0.1469
0.0906
1.5608
138
2671
2809
26
100.0000
0.1411
0.0909
1.5971
143
2677
2820
26
100.0000
0.1399
0.0905
1.6370
126
2703
2829
26
100.0000
0.1342
0.0929
1.6813
167
2646
2813
26
100.0000
0.1694
0.0936
1.7307
150
2696
2846
26
100.0000
0.1319
0.0936
1.7866
146
2678
2824
26
100.0000
0.1527
0.1001
1.8504
163
2657
2820
26
100.0000
0.1442
0.1012
1.9245
141
2677
2818
26
100.0000
0.1427
0.1018
2.0121
136
2704
2840
26
100.0000
0.1456
0.1000
2.1181
124
2711
2835
26
100.0000
0.1350
0.1008
2.2507
142
2711
2853
26
100.0000
0.1320
0.1142
2.4244
160
2687
2847
26
100.0000
0.1481
0.1253
2.6682
152
2708
2860
26
100.0000
0.1543
0.1341
3.0537
150
2724
2874
26
100.0000
0.1545
0.1342
3.8455
145
2762
2907
26
100.0000
0.1604
0.1537
26.294
160
2808
2968
26
98.0000
1.300
50.000
4IIL
73370
0.054
1.018
1
14.800
5.800
99.800
0.614
1.300
1.320
3604
0.908
1
4.300
98.900
0.533
1.320
1.350
3625
0.900
1
5.400
99.700
0.489
1.350
1.370
3613
0.920
1
5.800
100.000
0.424
1.370
1.400
3676
0.905
1
5.900
100.000
0.349
1.400
1.430
3615
0.930
1
5.900
100.000
0.275
1.430
1.460
3669
0.960
1
5.900
100.000
0.223
1.460
1.500
3621
0.990
1
6.000
100.000
0.181
1.500
1.540
3644
1.014
1
6.000
100.000
0.147
1.540
1.590
3658
1.082
1
6.000
100.000
0.131
1.590
1.640
3650
1.128
1
6.000
100.000
0.106
1.640
1.700
3660
1.136
1
6.000
100.000
0.086
1.700
1.760
3643
1.185
1
6.000
100.000
0.076
1.760
1.840
3668
1.207
1
6.000
100.000
0.064
1.840
1.940
3680
1.161
1
6.000
100.000
0.057
1.940
2.060
3693
1.031
1
6.000
99.900
0.057
2.060
2.220
3669
1.178
1
6.000
99.900
0.058
2.220
2.450
3709
1.095
1
6.000
99.900
0.048
2.450
2.800
3709
0.962
1
5.900
99.900
0.032
2.800
3.530
3734
0.956
1
5.800
99.900
0.028
3.530
50.000
3830
0.657
1
5.900
98.100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SBC-Collect
data reduction
HKL-2000
phasing
PHENIX
Crystal Structure of RfuA (TP0298) of T. pallidum Bound to Riboflavin
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
A
SER
24
A
SER
46
HELX_P
A
ALA
43
A
ALA
65
1
1
20
A
ASN
58
A
ASN
80
HELX_P
A
ALA
60
A
ALA
82
5
2
3
A
LEU
61
A
LEU
83
HELX_P
A
GLU
72
A
GLU
94
1
3
12
A
ALA
84
A
ALA
106
HELX_P
A
PHE
96
A
PHE
118
1
4
13
A
ASN
120
A
ASN
142
HELX_P
A
SER
138
A
SER
160
1
5
19
A
TYR
157
A
TYR
179
HELX_P
A
THR
163
A
THR
185
1
6
7
A
THR
163
A
THR
185
HELX_P
A
ASP
176
A
ASP
198
1
7
14
A
ASP
191
A
ASP
213
HELX_P
A
GLY
206
A
GLY
228
1
8
16
A
CYS
214
A
CYS
236
HELX_P
A
GLY
216
A
GLY
238
5
9
3
A
ALA
217
A
ALA
239
HELX_P
A
GLY
229
A
GLY
251
1
10
13
A
GLY
239
A
GLY
261
HELX_P
A
ALA
243
A
ALA
265
5
11
5
A
GLU
254
A
GLU
276
HELX_P
A
ARG
268
A
ARG
290
1
12
15
A
GLY
280
A
GLY
302
HELX_P
A
GLY
284
A
GLY
306
5
13
5
A
ASP
292
A
ASP
314
HELX_P
A
VAL
299
A
VAL
321
1
14
8
A
PRO
300
A
PRO
322
HELX_P
A
GLY
317
A
GLY
339
1
15
18
metalc
2.491
A
SER
136
A
O
SER
158
1_555
A
NA
402
C
NA
NA
1_555
metalc
2.526
A
SER
136
A
OG
SER
158
1_555
A
NA
402
C
NA
NA
1_555
metalc
2.805
A
SER
136
A
O
SER
158
1_555
A
NA
403
D
NA
NA
1_555
metalc
2.698
A
SER
138
A
O
SER
160
1_555
A
NA
403
D
NA
NA
1_555
metalc
2.462
A
ASN
144
A
O
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
metalc
3.021
A
ASN
144
A
OD1
ASN
166
1_555
A
NA
402
C
NA
NA
1_555
metalc
2.633
A
ASN
144
A
O
ASN
166
1_555
A
NA
403
D
NA
NA
1_555
metalc
2.395
A
ASP
146
A
O
ASP
168
1_555
A
NA
402
C
NA
NA
1_555
metalc
2.589
A
A
THR
161
A
OG1
THR
183
1_555
A
K
404
E
K
K
1_555
metalc
2.370
A
ASP
208
A
OD2
ASP
230
1_555
A
NA
402
C
NA
NA
1_555
metalc
2.559
A
NA
402
C
NA
NA
1_555
A
HOH
503
H
O
HOH
1_555
metalc
2.962
A
NA
403
D
NA
NA
1_555
A
HOH
532
H
O
HOH
1_555
metalc
3.083
A
NA
403
D
NA
NA
1_555
A
HOH
781
H
O
HOH
1_555
metalc
2.872
A
K
404
E
K
K
1_555
A
HOH
630
H
O
HOH
1_555
metalc
2.602
A
K
404
E
K
K
1_555
A
HOH
690
H
O
HOH
1_555
MEMBRANE PROTEIN
periplasmic-binding protein, riboflavin transport, MEMBRANE PROTEIN
TPN38_TREPA
UNP
1
21
Q56328
RPAVQDERAVRIAVFVPGFRHDSPVYAMLCDGVERAVTQERATGRSIGLDIIEAGPNQALWREKLAHLAAEQRYRLIVSS
NPALPHVLEPILRQFPLQRFLVLDAYAPQEHSLITFRYNQWEQAYLAGHLSALVSASAMRFANADKKIGLIAGQSYPVMT
QTIIPAFLAGARAVDPAFEVDVRVVGNWYDAAKSADLARILFHEGVDVMMPICGGANQGVLAAARELGFYVSWFDDNGYA
RAPGYVVGSSVMEQERLAYEQTLRCIRGELPSAGAWTLGVKDGYVRFIEEDPLYLQTVPEPIRVRQSALLRRIQSGELTL
PVR
21
343
4IIL
2
324
Q56328
A
1
24
346
1
expression tag
MET
-21
4IIL
A
Q56328
UNP
1
1
expression tag
SER
-20
4IIL
A
Q56328
UNP
2
1
expression tag
GLY
-19
4IIL
A
Q56328
UNP
3
1
expression tag
SER
-18
4IIL
A
Q56328
UNP
4
1
expression tag
HIS
-17
4IIL
A
Q56328
UNP
5
1
expression tag
HIS
-16
4IIL
A
Q56328
UNP
6
1
expression tag
HIS
-15
4IIL
A
Q56328
UNP
7
1
expression tag
HIS
-14
4IIL
A
Q56328
UNP
8
1
expression tag
HIS
-13
4IIL
A
Q56328
UNP
9
1
expression tag
HIS
-12
4IIL
A
Q56328
UNP
10
1
expression tag
SER
-11
4IIL
A
Q56328
UNP
11
1
expression tag
SER
-10
4IIL
A
Q56328
UNP
12
1
expression tag
GLY
-9
4IIL
A
Q56328
UNP
13
1
expression tag
ILE
-8
4IIL
A
Q56328
UNP
14
1
expression tag
GLU
-7
4IIL
A
Q56328
UNP
15
1
expression tag
GLY
-6
4IIL
A
Q56328
UNP
16
1
expression tag
ARG
-5
4IIL
A
Q56328
UNP
17
1
expression tag
GLY
-4
4IIL
A
Q56328
UNP
18
1
expression tag
ARG
-3
4IIL
A
Q56328
UNP
19
1
expression tag
LEU
-2
4IIL
A
Q56328
UNP
20
1
expression tag
ILE
-1
4IIL
A
Q56328
UNP
21
1
expression tag
LYS
0
4IIL
A
Q56328
UNP
22
1
expression tag
HIS
1
4IIL
A
Q56328
UNP
23
6
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ILE
48
A
ILE
70
A
GLU
54
A
GLU
76
A
VAL
11
A
VAL
33
A
VAL
17
A
VAL
39
A
LEU
77
A
LEU
99
A
SER
81
A
SER
103
A
PHE
101
A
PHE
123
A
LEU
104
A
LEU
126
A
LEU
114
A
LEU
136
A
TYR
119
A
TYR
141
A
GLY
275
A
GLY
297
A
LEU
279
A
LEU
301
A
GLU
180
A
GLU
202
A
VAL
185
A
VAL
207
A
LYS
148
A
LYS
170
A
ALA
153
A
ALA
175
A
VAL
209
A
VAL
231
A
ILE
213
A
ILE
235
A
TYR
231
A
TYR
253
A
ASP
236
A
ASP
258
A
VAL
247
A
VAL
269
A
MET
253
A
MET
275
A
VAL
286
A
VAL
308
A
PHE
288
A
PHE
310
BINDING SITE FOR RESIDUE RBF A 401
A
RBF
401
Software
17
BINDING SITE FOR RESIDUE NA A 402
A
NA
402
Software
5
BINDING SITE FOR RESIDUE NA A 403
A
NA
403
Software
6
BINDING SITE FOR RESIDUE K A 404
A
K
404
Software
5
BINDING SITE FOR RESIDUE EDO A 405
A
EDO
405
Software
4
BINDING SITE FOR RESIDUE EDO A 406
A
EDO
406
Software
7
A
SER
24
A
SER
46
17
1_555
A
VAL
26
A
VAL
48
17
1_555
A
TYR
27
A
TYR
49
17
1_555
A
ASN
82
A
ASN
104
17
1_555
A
ASP
105
A
ASP
127
17
1_555
A
GLN
121
A
GLN
143
17
1_555
A
TYR
157
A
TYR
179
17
1_555
A
TRP
189
A
TRP
211
17
1_555
A
ILE
213
A
ILE
235
17
1_555
A
GLY
215
A
GLY
237
17
1_555
A
ASP
236
A
ASP
258
17
1_555
A
MET
253
A
MET
275
17
1_555
A
HOH
510
H
HOH
17
1_555
A
HOH
522
H
HOH
17
1_555
A
HOH
523
H
HOH
17
1_555
A
HOH
525
H
HOH
17
1_555
A
HOH
555
H
HOH
17
1_555
A
SER
136
A
SER
158
5
1_555
A
ASN
144
A
ASN
166
5
1_555
A
ASP
146
A
ASP
168
5
1_555
A
ASP
208
A
ASP
230
5
1_555
A
HOH
503
H
HOH
5
1_555
A
SER
136
A
SER
158
6
1_555
A
ALA
137
A
ALA
159
6
1_555
A
SER
138
A
SER
160
6
1_555
A
ASN
144
A
ASN
166
6
1_555
A
HOH
532
H
HOH
6
1_555
A
HOH
781
H
HOH
6
1_555
A
THR
161
A
THR
183
5
1_555
A
GLN
162
A
GLN
184
5
1_555
A
HOH
528
H
HOH
5
3_655
A
HOH
630
H
HOH
5
1_555
A
HOH
690
H
HOH
5
1_555
A
GLU
254
A
GLU
276
4
1_555
A
ARG
287
A
ARG
309
4
1_555
A
HOH
561
H
HOH
4
1_555
A
HOH
583
H
HOH
4
1_555
A
GLY
275
A
GLY
297
7
4_566
A
ALA
276
A
ALA
298
7
4_566
A
TRP
277
A
TRP
299
7
4_566
A
LYS
282
A
LYS
304
7
1_555
A
THR
320
A
THR
342
7
1_555
A
HOH
658
H
HOH
7
1_555
A
HOH
720
H
HOH
7
1_555
20
C 2 2 21