0.009858
0.005692
0.000000
-0.000000
0.011383
0.000000
0.000000
-0.000000
0.007102
0.000000
0.000000
0.000000
Yu, W.
Tempel, W.
Li, Y.
El Bakkouri, M.
Shapira, M.
Bountra, C.
Arrowsmith, C.H.
Edwards, A.M.
Brown, P.J.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.000
90.000
120.000
101.439
101.439
140.799
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C15 H22 N6 O5 S
398.437
S-ADENOSYLMETHIONINE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C4 H9 N O2
103.120
UNKNOWN
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
C
N
296
N
C
N
297
S
S
N
298
N
C
N
299
N
C
N
300
S
C
N
301
N
O
N
302
S
C
N
303
N
O
N
304
R
C
N
305
N
O
N
306
R
C
Y
307
N
N
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
N
312
N
N
Y
313
N
N
Y
314
N
C
Y
315
N
N
Y
316
N
C
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
Y
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
N
323
N
sing
Y
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
To be Published
0353
Crystal structure of the complex of SETD8 with SAM
10.2210/pdb4ij8/pdb
pdb_00004ij8
100
1
CCD
2012-01-25
RAYONIX MX-300
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
08ID-1
CLSI
0.97949
SYNCHROTRON
CLSI BEAMLINE 08ID-1
18717.139
N-lysine methyltransferase SETD8
2.1.1.-, 2.1.1.43
C343S
2
man
polymer
869.063
helical peptide
SEE REMARK 999
1
man
polymer
398.437
S-ADENOSYLMETHIONINE
2
syn
non-polymer
UNKNOWN ATOM OR ION
22
syn
non-polymer
18.015
water
130
nat
water
H4-K20-HMTase SETD8, Histone-lysine N-methyltransferase SETD8, Lysine N-methyltransferase 5A, PR/SET domain-containing protein 07, PR-Set7, PR/SET07, SET domain-containing protein 8
no
no
AMGSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPS
TGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAH
PWLKH
AMGSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPS
TGCYMYYFQYLSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAH
PWLKH
A,B
polypeptide(L)
no
no
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)
XXXXXXXXXX
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SETD8, KMT5A, PRSET7, SET07, SET8
9606
Homo sapiens
511693
Escherichia coli
BL21-V2R-pRARE2
pHIS2
sample
32644
unidentified
562
Escherichia coli
1
2.73
54.94
VAPOR DIFFUSION
7.5
1.2 M sodium citrate, 0.1 M HEPES, 10-fold excess SAM, pH 7.5, VAPOR DIFFUSION, temperature 291K
291
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Source and taxonomy
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-16
1
1
2014-04-02
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-12-21
REL
REL
SAM
S-ADENOSYLMETHIONINE
UNX
UNKNOWN ATOM OR ION
HOH
water
THE MODEL INCLUDES A DISJOINT APPARENT ALPHA-HELIX THAT COULD NOT BE ASSIGNED TO A SPECIFIC SECTION OF THE AMINO ACID SEQUENCE OF THE TARGET PROTEIN.
1ZKK
PDB ENTRY 1ZKK
PDB
experimental model
SAM
501
3
SAM
SAM
501
A
UNX
1
4
UNX
UNX
502
A
UNX
4
4
UNX
UNX
503
A
UNX
5
4
UNX
UNX
504
A
UNX
6
4
UNX
UNX
505
A
UNX
18
4
UNX
UNX
506
A
UNX
20
4
UNX
UNX
507
A
UNX
21
4
UNX
UNX
508
A
UNX
22
4
UNX
UNX
509
A
UNX
23
4
UNX
UNX
510
A
UNX
25
4
UNX
UNX
511
A
UNX
29
4
UNX
UNX
512
A
UNX
30
4
UNX
UNX
513
A
UNX
31
4
UNX
UNX
514
A
SAM
501
3
SAM
SAM
501
B
UNX
3
4
UNX
UNX
502
B
UNX
7
4
UNX
UNX
503
B
UNX
8
4
UNX
UNX
504
B
UNX
10
4
UNX
UNX
505
B
UNX
13
4
UNX
UNX
506
B
UNX
14
4
UNX
UNX
507
B
UNX
17
4
UNX
UNX
508
B
UNX
19
4
UNX
UNX
509
B
UNX
28
4
UNX
UNX
510
B
HOH
3
5
HOH
HOH
601
A
HOH
8
5
HOH
HOH
602
A
HOH
9
5
HOH
HOH
603
A
HOH
11
5
HOH
HOH
604
A
HOH
13
5
HOH
HOH
605
A
HOH
14
5
HOH
HOH
606
A
HOH
21
5
HOH
HOH
607
A
HOH
22
5
HOH
HOH
608
A
HOH
27
5
HOH
HOH
609
A
HOH
31
5
HOH
HOH
610
A
HOH
32
5
HOH
HOH
611
A
HOH
34
5
HOH
HOH
612
A
HOH
36
5
HOH
HOH
613
A
HOH
242
5
HOH
HOH
614
A
HOH
243
5
HOH
HOH
615
A
HOH
244
5
HOH
HOH
616
A
HOH
245
5
HOH
HOH
617
A
HOH
253
5
HOH
HOH
618
A
HOH
255
5
HOH
HOH
619
A
HOH
259
5
HOH
HOH
620
A
HOH
260
5
HOH
HOH
621
A
HOH
262
5
HOH
HOH
622
A
HOH
266
5
HOH
HOH
623
A
HOH
267
5
HOH
HOH
624
A
HOH
270
5
HOH
HOH
625
A
HOH
271
5
HOH
HOH
626
A
HOH
279
5
HOH
HOH
627
A
HOH
284
5
HOH
HOH
628
A
HOH
285
5
HOH
HOH
629
A
HOH
286
5
HOH
HOH
630
A
HOH
287
5
HOH
HOH
631
A
HOH
288
5
HOH
HOH
632
A
HOH
289
5
HOH
HOH
633
A
HOH
290
5
HOH
HOH
634
A
HOH
291
5
HOH
HOH
635
A
HOH
293
5
HOH
HOH
636
A
HOH
295
5
HOH
HOH
637
A
HOH
296
5
HOH
HOH
638
A
HOH
307
5
HOH
HOH
639
A
HOH
308
5
HOH
HOH
640
A
HOH
316
5
HOH
HOH
641
A
HOH
317
5
HOH
HOH
642
A
HOH
318
5
HOH
HOH
643
A
HOH
319
5
HOH
HOH
644
A
HOH
321
5
HOH
HOH
645
A
HOH
322
5
HOH
HOH
646
A
HOH
323
5
HOH
HOH
647
A
HOH
324
5
HOH
HOH
648
A
HOH
325
5
HOH
HOH
649
A
HOH
328
5
HOH
HOH
650
A
HOH
329
5
HOH
HOH
651
A
HOH
330
5
HOH
HOH
652
A
HOH
333
5
HOH
HOH
653
A
HOH
334
5
HOH
HOH
654
A
HOH
335
5
HOH
HOH
655
A
HOH
336
5
HOH
HOH
656
A
HOH
357
5
HOH
HOH
657
A
HOH
358
5
HOH
HOH
658
A
HOH
359
5
HOH
HOH
659
A
HOH
360
5
HOH
HOH
660
A
HOH
362
5
HOH
HOH
661
A
HOH
364
5
HOH
HOH
662
A
HOH
365
5
HOH
HOH
663
A
HOH
1
5
HOH
HOH
601
B
HOH
4
5
HOH
HOH
602
B
HOH
5
5
HOH
HOH
603
B
HOH
6
5
HOH
HOH
604
B
HOH
7
5
HOH
HOH
605
B
HOH
10
5
HOH
HOH
606
B
HOH
12
5
HOH
HOH
607
B
HOH
16
5
HOH
HOH
608
B
HOH
17
5
HOH
HOH
609
B
HOH
18
5
HOH
HOH
610
B
HOH
19
5
HOH
HOH
611
B
HOH
20
5
HOH
HOH
612
B
HOH
23
5
HOH
HOH
613
B
HOH
24
5
HOH
HOH
614
B
HOH
25
5
HOH
HOH
615
B
HOH
26
5
HOH
HOH
616
B
HOH
28
5
HOH
HOH
617
B
HOH
29
5
HOH
HOH
618
B
HOH
30
5
HOH
HOH
619
B
HOH
35
5
HOH
HOH
620
B
HOH
247
5
HOH
HOH
621
B
HOH
248
5
HOH
HOH
622
B
HOH
251
5
HOH
HOH
623
B
HOH
254
5
HOH
HOH
624
B
HOH
257
5
HOH
HOH
625
B
HOH
258
5
HOH
HOH
626
B
HOH
261
5
HOH
HOH
627
B
HOH
264
5
HOH
HOH
628
B
HOH
265
5
HOH
HOH
629
B
HOH
268
5
HOH
HOH
630
B
HOH
272
5
HOH
HOH
631
B
HOH
273
5
HOH
HOH
632
B
HOH
281
5
HOH
HOH
633
B
HOH
282
5
HOH
HOH
634
B
HOH
294
5
HOH
HOH
635
B
HOH
297
5
HOH
HOH
636
B
HOH
300
5
HOH
HOH
637
B
HOH
301
5
HOH
HOH
638
B
HOH
302
5
HOH
HOH
639
B
HOH
304
5
HOH
HOH
640
B
HOH
305
5
HOH
HOH
641
B
HOH
311
5
HOH
HOH
642
B
HOH
313
5
HOH
HOH
643
B
HOH
314
5
HOH
HOH
644
B
HOH
315
5
HOH
HOH
645
B
HOH
320
5
HOH
HOH
646
B
HOH
327
5
HOH
HOH
647
B
HOH
331
5
HOH
HOH
648
B
HOH
332
5
HOH
HOH
649
B
HOH
337
5
HOH
HOH
650
B
HOH
338
5
HOH
HOH
651
B
HOH
339
5
HOH
HOH
652
B
HOH
340
5
HOH
HOH
653
B
HOH
341
5
HOH
HOH
654
B
HOH
342
5
HOH
HOH
655
B
HOH
343
5
HOH
HOH
656
B
HOH
344
5
HOH
HOH
657
B
HOH
346
5
HOH
HOH
658
B
HOH
347
5
HOH
HOH
659
B
HOH
348
5
HOH
HOH
660
B
HOH
349
5
HOH
HOH
661
B
HOH
350
5
HOH
HOH
662
B
HOH
351
5
HOH
HOH
663
B
HOH
353
5
HOH
HOH
664
B
HOH
354
5
HOH
HOH
665
B
HOH
355
5
HOH
HOH
666
B
HOH
356
5
HOH
HOH
667
B
n
1
229
A
n
2
230
A
n
3
231
A
n
4
232
A
ARG
233
n
5
ARG
233
A
LYS
234
n
6
LYS
234
A
SER
235
n
7
SER
235
A
LYS
236
n
8
LYS
236
A
ALA
237
n
9
ALA
237
A
GLU
238
n
10
GLU
238
A
LEU
239
n
11
LEU
239
A
GLN
240
n
12
GLN
240
A
SER
241
n
13
SER
241
A
GLU
242
n
14
GLU
242
A
GLU
243
n
15
GLU
243
A
ARG
244
n
16
ARG
244
A
LYS
245
n
17
LYS
245
A
ARG
246
n
18
ARG
246
A
ILE
247
n
19
ILE
247
A
ASP
248
n
20
ASP
248
A
GLU
249
n
21
GLU
249
A
LEU
250
n
22
LEU
250
A
ILE
251
n
23
ILE
251
A
GLU
252
n
24
GLU
252
A
SER
253
n
25
SER
253
A
GLY
254
n
26
GLY
254
A
LYS
255
n
27
LYS
255
A
GLU
256
n
28
GLU
256
A
GLU
257
n
29
GLU
257
A
GLY
258
n
30
GLY
258
A
MET
259
n
31
MET
259
A
LYS
260
n
32
LYS
260
A
ILE
261
n
33
ILE
261
A
ASP
262
n
34
ASP
262
A
LEU
263
n
35
LEU
263
A
ILE
264
n
36
ILE
264
A
ASP
265
n
37
ASP
265
A
GLY
266
n
38
GLY
266
A
LYS
267
n
39
LYS
267
A
GLY
268
n
40
GLY
268
A
ARG
269
n
41
ARG
269
A
GLY
270
n
42
GLY
270
A
VAL
271
n
43
VAL
271
A
ILE
272
n
44
ILE
272
A
ALA
273
n
45
ALA
273
A
THR
274
n
46
THR
274
A
LYS
275
n
47
LYS
275
A
GLN
276
n
48
GLN
276
A
PHE
277
n
49
PHE
277
A
SER
278
n
50
SER
278
A
ARG
279
n
51
ARG
279
A
GLY
280
n
52
GLY
280
A
ASP
281
n
53
ASP
281
A
PHE
282
n
54
PHE
282
A
VAL
283
n
55
VAL
283
A
VAL
284
n
56
VAL
284
A
GLU
285
n
57
GLU
285
A
TYR
286
n
58
TYR
286
A
HIS
287
n
59
HIS
287
A
GLY
288
n
60
GLY
288
A
ASP
289
n
61
ASP
289
A
LEU
290
n
62
LEU
290
A
ILE
291
n
63
ILE
291
A
GLU
292
n
64
GLU
292
A
ILE
293
n
65
ILE
293
A
THR
294
n
66
THR
294
A
ASP
295
n
67
ASP
295
A
ALA
296
n
68
ALA
296
A
LYS
297
n
69
LYS
297
A
LYS
298
n
70
LYS
298
A
ARG
299
n
71
ARG
299
A
GLU
300
n
72
GLU
300
A
ALA
301
n
73
ALA
301
A
LEU
302
n
74
LEU
302
A
TYR
303
n
75
TYR
303
A
ALA
304
n
76
ALA
304
A
GLN
305
n
77
GLN
305
A
ASP
306
n
78
ASP
306
A
PRO
307
n
79
PRO
307
A
SER
308
n
80
SER
308
A
THR
309
n
81
THR
309
A
GLY
310
n
82
GLY
310
A
CYS
311
n
83
CYS
311
A
TYR
312
n
84
TYR
312
A
MET
313
n
85
MET
313
A
TYR
314
n
86
TYR
314
A
TYR
315
n
87
TYR
315
A
PHE
316
n
88
PHE
316
A
GLN
317
n
89
GLN
317
A
TYR
318
n
90
TYR
318
A
LEU
319
n
91
LEU
319
A
SER
320
n
92
SER
320
A
LYS
321
n
93
LYS
321
A
THR
322
n
94
THR
322
A
TYR
323
n
95
TYR
323
A
CYS
324
n
96
CYS
324
A
VAL
325
n
97
VAL
325
A
ASP
326
n
98
ASP
326
A
ALA
327
n
99
ALA
327
A
THR
328
n
100
THR
328
A
ARG
329
n
101
ARG
329
A
GLU
330
n
102
GLU
330
A
THR
331
n
103
THR
331
A
ASN
332
n
104
ASN
332
A
ARG
333
n
105
ARG
333
A
LEU
334
n
106
LEU
334
A
GLY
335
n
107
GLY
335
A
ARG
336
n
108
ARG
336
A
LEU
337
n
109
LEU
337
A
ILE
338
n
110
ILE
338
A
ASN
339
n
111
ASN
339
A
HIS
340
n
112
HIS
340
A
SER
341
n
113
SER
341
A
LYS
342
n
114
LYS
342
A
SER
343
n
115
SER
343
A
GLY
344
n
116
GLY
344
A
ASN
345
n
117
ASN
345
A
CYS
346
n
118
CYS
346
A
GLN
347
n
119
GLN
347
A
THR
348
n
120
THR
348
A
LYS
349
n
121
LYS
349
A
LEU
350
n
122
LEU
350
A
HIS
351
n
123
HIS
351
A
ASP
352
n
124
ASP
352
A
ILE
353
n
125
ILE
353
A
ASP
354
n
126
ASP
354
A
GLY
355
n
127
GLY
355
A
VAL
356
n
128
VAL
356
A
PRO
357
n
129
PRO
357
A
HIS
358
n
130
HIS
358
A
LEU
359
n
131
LEU
359
A
ILE
360
n
132
ILE
360
A
LEU
361
n
133
LEU
361
A
ILE
362
n
134
ILE
362
A
ALA
363
n
135
ALA
363
A
SER
364
n
136
SER
364
A
ARG
365
n
137
ARG
365
A
ASP
366
n
138
ASP
366
A
ILE
367
n
139
ILE
367
A
ALA
368
n
140
ALA
368
A
ALA
369
n
141
ALA
369
A
GLY
370
n
142
GLY
370
A
GLU
371
n
143
GLU
371
A
GLU
372
n
144
GLU
372
A
LEU
373
n
145
LEU
373
A
LEU
374
n
146
LEU
374
A
TYR
375
n
147
TYR
375
A
ASP
376
n
148
ASP
376
A
TYR
377
n
149
TYR
377
A
GLY
378
n
150
GLY
378
A
ASP
379
n
151
ASP
379
A
ARG
380
n
152
ARG
380
A
SER
381
n
153
SER
381
A
LYS
382
n
154
LYS
382
A
ALA
383
n
155
ALA
383
A
SER
384
n
156
SER
384
A
ILE
385
n
157
ILE
385
A
GLU
386
n
158
GLU
386
A
ALA
387
n
159
ALA
387
A
HIS
388
n
160
HIS
388
A
PRO
389
n
161
PRO
389
A
TRP
390
n
162
TRP
390
A
LEU
391
n
163
LEU
391
A
LYS
392
n
164
LYS
392
A
HIS
393
n
165
HIS
393
A
n
1
229
B
n
2
230
B
n
3
231
B
n
4
232
B
n
5
233
B
n
6
234
B
n
7
235
B
n
8
236
B
n
9
237
B
n
10
238
B
n
11
239
B
n
12
240
B
n
13
241
B
n
14
242
B
n
15
243
B
ARG
244
n
16
ARG
244
B
LYS
245
n
17
LYS
245
B
ARG
246
n
18
ARG
246
B
ILE
247
n
19
ILE
247
B
ASP
248
n
20
ASP
248
B
GLU
249
n
21
GLU
249
B
LEU
250
n
22
LEU
250
B
ILE
251
n
23
ILE
251
B
GLU
252
n
24
GLU
252
B
SER
253
n
25
SER
253
B
GLY
254
n
26
GLY
254
B
LYS
255
n
27
LYS
255
B
GLU
256
n
28
GLU
256
B
GLU
257
n
29
GLU
257
B
GLY
258
n
30
GLY
258
B
MET
259
n
31
MET
259
B
LYS
260
n
32
LYS
260
B
ILE
261
n
33
ILE
261
B
ASP
262
n
34
ASP
262
B
LEU
263
n
35
LEU
263
B
ILE
264
n
36
ILE
264
B
ASP
265
n
37
ASP
265
B
GLY
266
n
38
GLY
266
B
LYS
267
n
39
LYS
267
B
GLY
268
n
40
GLY
268
B
ARG
269
n
41
ARG
269
B
GLY
270
n
42
GLY
270
B
VAL
271
n
43
VAL
271
B
ILE
272
n
44
ILE
272
B
ALA
273
n
45
ALA
273
B
THR
274
n
46
THR
274
B
LYS
275
n
47
LYS
275
B
GLN
276
n
48
GLN
276
B
PHE
277
n
49
PHE
277
B
SER
278
n
50
SER
278
B
ARG
279
n
51
ARG
279
B
GLY
280
n
52
GLY
280
B
ASP
281
n
53
ASP
281
B
PHE
282
n
54
PHE
282
B
VAL
283
n
55
VAL
283
B
VAL
284
n
56
VAL
284
B
GLU
285
n
57
GLU
285
B
TYR
286
n
58
TYR
286
B
HIS
287
n
59
HIS
287
B
GLY
288
n
60
GLY
288
B
ASP
289
n
61
ASP
289
B
LEU
290
n
62
LEU
290
B
ILE
291
n
63
ILE
291
B
GLU
292
n
64
GLU
292
B
ILE
293
n
65
ILE
293
B
THR
294
n
66
THR
294
B
ASP
295
n
67
ASP
295
B
ALA
296
n
68
ALA
296
B
LYS
297
n
69
LYS
297
B
LYS
298
n
70
LYS
298
B
ARG
299
n
71
ARG
299
B
GLU
300
n
72
GLU
300
B
ALA
301
n
73
ALA
301
B
LEU
302
n
74
LEU
302
B
TYR
303
n
75
TYR
303
B
ALA
304
n
76
ALA
304
B
GLN
305
n
77
GLN
305
B
ASP
306
n
78
ASP
306
B
PRO
307
n
79
PRO
307
B
SER
308
n
80
SER
308
B
THR
309
n
81
THR
309
B
GLY
310
n
82
GLY
310
B
CYS
311
n
83
CYS
311
B
TYR
312
n
84
TYR
312
B
MET
313
n
85
MET
313
B
TYR
314
n
86
TYR
314
B
TYR
315
n
87
TYR
315
B
PHE
316
n
88
PHE
316
B
GLN
317
n
89
GLN
317
B
TYR
318
n
90
TYR
318
B
LEU
319
n
91
LEU
319
B
SER
320
n
92
SER
320
B
LYS
321
n
93
LYS
321
B
THR
322
n
94
THR
322
B
TYR
323
n
95
TYR
323
B
CYS
324
n
96
CYS
324
B
VAL
325
n
97
VAL
325
B
ASP
326
n
98
ASP
326
B
ALA
327
n
99
ALA
327
B
THR
328
n
100
THR
328
B
ARG
329
n
101
ARG
329
B
GLU
330
n
102
GLU
330
B
THR
331
n
103
THR
331
B
ASN
332
n
104
ASN
332
B
ARG
333
n
105
ARG
333
B
LEU
334
n
106
LEU
334
B
GLY
335
n
107
GLY
335
B
ARG
336
n
108
ARG
336
B
LEU
337
n
109
LEU
337
B
ILE
338
n
110
ILE
338
B
ASN
339
n
111
ASN
339
B
HIS
340
n
112
HIS
340
B
SER
341
n
113
SER
341
B
LYS
342
n
114
LYS
342
B
SER
343
n
115
SER
343
B
GLY
344
n
116
GLY
344
B
ASN
345
n
117
ASN
345
B
CYS
346
n
118
CYS
346
B
GLN
347
n
119
GLN
347
B
THR
348
n
120
THR
348
B
LYS
349
n
121
LYS
349
B
LEU
350
n
122
LEU
350
B
HIS
351
n
123
HIS
351
B
ASP
352
n
124
ASP
352
B
ILE
353
n
125
ILE
353
B
ASP
354
n
126
ASP
354
B
GLY
355
n
127
GLY
355
B
VAL
356
n
128
VAL
356
B
PRO
357
n
129
PRO
357
B
HIS
358
n
130
HIS
358
B
LEU
359
n
131
LEU
359
B
ILE
360
n
132
ILE
360
B
LEU
361
n
133
LEU
361
B
ILE
362
n
134
ILE
362
B
ALA
363
n
135
ALA
363
B
SER
364
n
136
SER
364
B
ARG
365
n
137
ARG
365
B
ASP
366
n
138
ASP
366
B
ILE
367
n
139
ILE
367
B
ALA
368
n
140
ALA
368
B
ALA
369
n
141
ALA
369
B
GLY
370
n
142
GLY
370
B
GLU
371
n
143
GLU
371
B
GLU
372
n
144
GLU
372
B
LEU
373
n
145
LEU
373
B
LEU
374
n
146
LEU
374
B
TYR
375
n
147
TYR
375
B
ASP
376
n
148
ASP
376
B
TYR
377
n
149
TYR
377
B
GLY
378
n
150
GLY
378
B
ASP
379
n
151
ASP
379
B
ARG
380
n
152
ARG
380
B
SER
381
n
153
SER
381
B
LYS
382
n
154
LYS
382
B
ALA
383
n
155
ALA
383
B
SER
384
n
156
SER
384
B
ILE
385
n
157
ILE
385
B
GLU
386
n
158
GLU
386
B
ALA
387
n
159
ALA
387
B
HIS
388
n
160
HIS
388
B
PRO
389
n
161
PRO
389
B
TRP
390
n
162
TRP
390
B
LEU
391
n
163
LEU
391
B
LYS
392
n
164
LYS
392
B
HIS
393
n
165
HIS
393
B
UNK
4
n
1
UNK
4
I
UNK
5
n
2
UNK
5
I
UNK
6
n
3
UNK
6
I
UNK
7
n
4
UNK
7
I
UNK
8
n
5
UNK
8
I
UNK
9
n
6
UNK
9
I
UNK
10
n
7
UNK
10
I
UNK
11
n
8
UNK
11
I
UNK
12
n
9
UNK
12
I
UNK
13
n
10
UNK
13
I
2.3918
0.0310
-0.1607
1.4072
0.4080
1.7877
-0.0796
0.0487
0.0541
-0.0558
0.0252
-0.3596
0.0240
0.2652
0.0544
0.0592
-0.0157
0.0447
0.0553
0.0108
0.1252
refined
-11.2089
34.0938
4.9505
X-RAY DIFFRACTION
2.8454
-0.2796
-0.1013
2.2859
-0.1508
1.7569
-0.0104
0.1036
-0.4324
-0.1415
-0.1416
0.2694
0.3434
-0.1925
0.1520
0.1112
-0.0592
0.0349
0.0561
-0.0603
0.1106
refined
-37.9893
20.1746
3.5645
X-RAY DIFFRACTION
A
233
A
393
X-RAY DIFFRACTION
1
B
244
B
393
X-RAY DIFFRACTION
2
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
1
monomeric
1830
-10
15380
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
264
A
N
ILE
36
A
O
GLY
268
A
O
GLY
40
A
N
VAL
283
A
N
VAL
55
A
O
LEU
361
A
O
LEU
133
A
O
ILE
360
A
O
ILE
132
A
N
LYS
349
A
N
LYS
121
A
N
ASP
289
A
N
ASP
61
A
O
ASP
326
A
O
ASP
98
A
O
TYR
323
A
O
TYR
95
A
N
PHE
316
A
N
PHE
88
A
N
ASN
339
A
N
ASN
111
A
O
TYR
375
A
O
TYR
147
B
N
ILE
264
B
N
ILE
36
B
O
GLY
268
B
O
GLY
40
B
N
VAL
284
B
N
VAL
56
B
O
LEU
361
B
O
LEU
133
B
O
HIS
358
B
O
HIS
130
B
N
HIS
351
B
N
HIS
123
B
N
ILE
291
B
N
ILE
63
B
O
CYS
324
B
O
CYS
96
B
O
TYR
323
B
O
TYR
95
B
N
PHE
316
B
N
PHE
88
B
N
ASN
339
B
N
ASN
111
B
O
TYR
375
B
O
TYR
147
1
A
HOH
658
BA
HOH
1
B
HOH
631
CA
HOH
1
A
CG
ARG
233
A
CG
ARG
5
1
Y
1
A
CD
ARG
233
A
CD
ARG
5
1
Y
1
A
NE
ARG
233
A
NE
ARG
5
1
Y
1
A
CZ
ARG
233
A
CZ
ARG
5
1
Y
1
A
NH1
ARG
233
A
NH1
ARG
5
1
Y
1
A
NH2
ARG
233
A
NH2
ARG
5
1
Y
1
A
CE
LYS
234
A
CE
LYS
6
1
Y
1
A
NZ
LYS
234
A
NZ
LYS
6
1
Y
1
A
CG
GLU
238
A
CG
GLU
10
1
Y
1
A
CD
GLU
238
A
CD
GLU
10
1
Y
1
A
OE1
GLU
238
A
OE1
GLU
10
1
Y
1
A
OE2
GLU
238
A
OE2
GLU
10
1
Y
1
A
CG
LEU
239
A
CG
LEU
11
1
Y
1
A
CD1
LEU
239
A
CD1
LEU
11
1
Y
1
A
CD2
LEU
239
A
CD2
LEU
11
1
Y
1
A
CG
GLN
240
A
CG
GLN
12
1
Y
1
A
CD
GLN
240
A
CD
GLN
12
1
Y
1
A
OE1
GLN
240
A
OE1
GLN
12
1
Y
1
A
NE2
GLN
240
A
NE2
GLN
12
1
Y
1
A
OG
SER
241
A
OG
SER
13
1
Y
1
A
CG
GLU
242
A
CG
GLU
14
1
Y
1
A
CD
GLU
242
A
CD
GLU
14
1
Y
1
A
OE1
GLU
242
A
OE1
GLU
14
1
Y
1
A
OE2
GLU
242
A
OE2
GLU
14
1
Y
1
A
CG
GLU
243
A
CG
GLU
15
1
Y
1
A
CD
GLU
243
A
CD
GLU
15
1
Y
1
A
OE1
GLU
243
A
OE1
GLU
15
1
Y
1
A
OE2
GLU
243
A
OE2
GLU
15
1
Y
1
A
CG
LYS
245
A
CG
LYS
17
1
Y
1
A
CD
LYS
245
A
CD
LYS
17
1
Y
1
A
CE
LYS
245
A
CE
LYS
17
1
Y
1
A
NZ
LYS
245
A
NZ
LYS
17
1
Y
1
A
CG
ARG
246
A
CG
ARG
18
1
Y
1
A
CD
ARG
246
A
CD
ARG
18
1
Y
1
A
NE
ARG
246
A
NE
ARG
18
1
Y
1
A
CZ
ARG
246
A
CZ
ARG
18
1
Y
1
A
NH1
ARG
246
A
NH1
ARG
18
1
Y
1
A
NH2
ARG
246
A
NH2
ARG
18
1
Y
1
A
CD1
ILE
247
A
CD1
ILE
19
1
Y
1
A
CG
GLU
249
A
CG
GLU
21
1
Y
1
A
CD
GLU
249
A
CD
GLU
21
1
Y
1
A
OE1
GLU
249
A
OE1
GLU
21
1
Y
1
A
OE2
GLU
249
A
OE2
GLU
21
1
Y
1
A
CG
LYS
255
A
CG
LYS
27
1
Y
1
A
CD
LYS
255
A
CD
LYS
27
1
Y
1
A
CE
LYS
255
A
CE
LYS
27
1
Y
1
A
NZ
LYS
255
A
NZ
LYS
27
1
Y
1
A
CD
GLU
257
A
CD
GLU
29
1
Y
1
A
OE1
GLU
257
A
OE1
GLU
29
1
Y
1
A
OE2
GLU
257
A
OE2
GLU
29
1
Y
1
A
NE
ARG
279
A
NE
ARG
51
1
Y
1
A
CZ
ARG
279
A
CZ
ARG
51
1
Y
1
A
NH1
ARG
279
A
NH1
ARG
51
1
Y
1
A
NH2
ARG
279
A
NH2
ARG
51
1
Y
1
A
CD
LYS
297
A
CD
LYS
69
1
Y
1
A
CE
LYS
297
A
CE
LYS
69
1
Y
1
A
NZ
LYS
297
A
NZ
LYS
69
1
Y
1
A
CD
LYS
382
A
CD
LYS
154
1
Y
1
A
CE
LYS
382
A
CE
LYS
154
1
Y
1
A
NZ
LYS
382
A
NZ
LYS
154
1
Y
1
B
CG
ARG
244
B
CG
ARG
16
1
Y
1
B
CD
ARG
244
B
CD
ARG
16
1
Y
1
B
NE
ARG
244
B
NE
ARG
16
1
Y
1
B
CZ
ARG
244
B
CZ
ARG
16
1
Y
1
B
NH1
ARG
244
B
NH1
ARG
16
1
Y
1
B
NH2
ARG
244
B
NH2
ARG
16
1
Y
1
B
CG
LYS
245
B
CG
LYS
17
1
Y
1
B
CD
LYS
245
B
CD
LYS
17
1
Y
1
B
CE
LYS
245
B
CE
LYS
17
1
Y
1
B
NZ
LYS
245
B
NZ
LYS
17
1
Y
1
B
CG
ARG
246
B
CG
ARG
18
1
Y
1
B
CD
ARG
246
B
CD
ARG
18
1
Y
1
B
NE
ARG
246
B
NE
ARG
18
1
Y
1
B
CZ
ARG
246
B
CZ
ARG
18
1
Y
1
B
NH1
ARG
246
B
NH1
ARG
18
1
Y
1
B
NH2
ARG
246
B
NH2
ARG
18
1
Y
1
B
CD1
ILE
247
B
CD1
ILE
19
1
Y
1
B
CG
GLU
249
B
CG
GLU
21
1
Y
1
B
CD
GLU
249
B
CD
GLU
21
1
Y
1
B
OE1
GLU
249
B
OE1
GLU
21
1
Y
1
B
OE2
GLU
249
B
OE2
GLU
21
1
Y
1
B
NZ
LYS
260
B
NZ
LYS
32
1
Y
1
B
NH1
ARG
279
B
NH1
ARG
51
1
Y
1
B
NH2
ARG
279
B
NH2
ARG
51
1
Y
1
B
CG
LYS
297
B
CG
LYS
69
1
Y
1
B
CD
LYS
297
B
CD
LYS
69
1
Y
1
B
CE
LYS
297
B
CE
LYS
69
1
Y
1
B
NZ
LYS
297
B
NZ
LYS
69
1
Y
1
B
CD
ARG
329
B
CD
ARG
101
1
Y
1
B
NE
ARG
329
B
NE
ARG
101
1
Y
1
B
CZ
ARG
329
B
CZ
ARG
101
1
Y
1
B
NH1
ARG
329
B
NH1
ARG
101
1
Y
1
B
NH2
ARG
329
B
NH2
ARG
101
1
Y
1
B
CD
LYS
349
B
CD
LYS
121
1
Y
1
B
CE
LYS
349
B
CE
LYS
121
1
Y
1
B
NZ
LYS
349
B
NZ
LYS
121
1
Y
1
B
CG
ASP
354
B
CG
ASP
126
1
Y
1
B
OD1
ASP
354
B
OD1
ASP
126
1
Y
1
B
OD2
ASP
354
B
OD2
ASP
126
1
Y
1
B
NZ
LYS
382
B
NZ
LYS
154
1
Y
1
A
ALA
229
A
ALA
1
1
Y
1
A
MET
230
A
MET
2
1
Y
1
A
GLY
231
A
GLY
3
1
Y
1
A
SER
232
A
SER
4
1
Y
1
B
ALA
229
B
ALA
1
1
Y
1
B
MET
230
B
MET
2
1
Y
1
B
GLY
231
B
GLY
3
1
Y
1
B
SER
232
B
SER
4
1
Y
1
B
ARG
233
B
ARG
5
1
Y
1
B
LYS
234
B
LYS
6
1
Y
1
B
SER
235
B
SER
7
1
Y
1
B
LYS
236
B
LYS
8
1
Y
1
B
ALA
237
B
ALA
9
1
Y
1
B
GLU
238
B
GLU
10
1
Y
1
B
LEU
239
B
LEU
11
1
Y
1
B
GLN
240
B
GLN
12
1
Y
1
B
SER
241
B
SER
13
1
Y
1
B
GLU
242
B
GLU
14
1
Y
1
B
GLU
243
B
GLU
15
1
Y
1
A
A
O
UNK
MET
UNX
313
502
2.16
1
3.47
0.50
120.30
123.77
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
299
299
299
N
1
A
VAL
283
-102.36
-61.79
1
A
LEU
319
52.28
-125.56
1
B
LEU
319
55.70
-121.76
97.230
37.7619
15.590
-0.1400
-0.1400
-0.0000
-0.1400
-0.0000
0.4400
0.9580
0.9520
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : WITH TLS ADDED
ARP/WARP, COOT, AND THE MOLPROBITY SERVER WERE ALSO USED DURING REFINEMENT.
0.1985
0.1757
0.1769
2.000
43.96
1516
29561
5.1
99.9700
0.1892
0.1704
1.000
0.300
0.8803
6.3320
0.0900
0.1405
0.1248
THIN SHELLS (SFTOOLS)
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.1400
0.1250
0.8000
0.8000
1.2000
PDB ENTRY 1ZKK
MAXIMUM LIKELIHOOD
MASK
2.000
43.96
130
2646
76
0
2440
0.015
0.019
2575
0.002
0.020
2342
1.481
1.990
3497
0.720
3.000
5383
6.144
5.000
331
30.140
24.107
112
11.840
15.000
418
18.086
15.000
15
0.086
0.200
391
0.005
0.020
2945
0.001
0.020
583
1.645
2.224
1303
1.645
2.223
1302
2.380
3.323
1624
0.3210
0.2220
2.052
2
2116
2118
20
99.95
2.000
87.849
4IJ8
29619
29619
0.112
1
19.7
21.6
100.0
0.942
2.000
2.110
0.8
93086
4231
0.942
1
22.0
100.0
0.591
2.110
2.240
1.3
87962
3990
0.591
1
22.0
100.0
0.404
2.240
2.390
1.9
83018
3783
0.404
1
21.9
100.0
0.286
2.390
2.580
2.7
77728
3535
0.286
1
22.0
100.0
0.180
2.580
2.830
4.2
71670
3272
0.180
1
21.9
100.0
0.113
2.830
3.160
6.3
64841
2984
0.113
1
21.7
100.0
0.081
3.160
3.650
7.9
56606
2649
0.081
1
21.4
100.0
0.064
3.650
4.470
9.2
47704
2272
0.064
1
21.0
100.0
0.061
4.470
6.320
9.4
37021
1811
0.061
1
20.4
100.0
0.058
6.320
46.928
9.2
20016
1092
0.058
1
18.3
99.7
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0032
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
Crystal structure of the complex of SETD8 with SAM
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
SER
235
A
SER
7
HELX_P
A
GLY
254
A
GLY
26
1
1
20
A
ASP
295
A
ASP
67
HELX_P
A
GLN
305
A
GLN
77
1
2
11
A
GLN
305
A
GLN
77
HELX_P
A
GLY
310
A
GLY
82
1
3
6
A
LEU
334
A
LEU
106
HELX_P
A
ILE
338
A
ILE
110
5
4
5
A
SER
381
A
SER
153
HELX_P
A
HIS
388
A
HIS
160
1
5
8
A
PRO
389
A
PRO
161
HELX_P
A
HIS
393
A
HIS
165
5
6
5
B
LYS
245
B
LYS
17
HELX_P
B
GLY
254
B
GLY
26
1
7
10
B
ASP
295
B
ASP
67
HELX_P
B
GLN
305
B
GLN
77
1
8
11
B
GLN
305
B
GLN
77
HELX_P
B
GLY
310
B
GLY
82
1
9
6
B
LEU
334
B
LEU
106
HELX_P
B
ILE
338
B
ILE
110
5
10
5
B
SER
381
B
SER
153
HELX_P
B
HIS
388
B
HIS
160
1
11
8
B
PRO
389
B
PRO
161
HELX_P
B
HIS
393
B
HIS
165
5
12
5
I
UNK
5
C
UNK
2
HELX_P
I
UNK
12
C
UNK
9
1
13
8
TRANSFERASE
Structural Genomics Consortium, SGC, N-lysine methyltransferase, TRANSFERASE
SETD8_HUMAN
UNP
1
232
Q9NQR1
SRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGC
YMYYFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAHPWL
KH
4IJ8
PDB
2
1
4IJ8
XXXXXXXXXX
232
393
4IJ8
232
393
Q9NQR1
A
1
4
165
232
393
4IJ8
232
393
Q9NQR1
B
1
4
165
4
13
4IJ8
4
13
4IJ8
I
2
1
10
1
expression tag
ALA
229
4IJ8
A
Q9NQR1
UNP
1
1
expression tag
MET
230
4IJ8
A
Q9NQR1
UNP
2
1
expression tag
GLY
231
4IJ8
A
Q9NQR1
UNP
3
1
CYS
engineered mutation
SER
343
4IJ8
A
Q9NQR1
UNP
343
115
2
expression tag
ALA
229
4IJ8
B
Q9NQR1
UNP
1
2
expression tag
MET
230
4IJ8
B
Q9NQR1
UNP
2
2
expression tag
GLY
231
4IJ8
B
Q9NQR1
UNP
3
2
CYS
engineered mutation
SER
343
4IJ8
B
Q9NQR1
UNP
343
115
2
3
3
2
2
3
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
MET
259
A
MET
31
A
ILE
264
A
ILE
36
A
GLY
268
A
GLY
40
A
ALA
273
A
ALA
45
A
PHE
282
A
PHE
54
A
GLU
285
A
GLU
57
A
VAL
356
A
VAL
128
A
ALA
363
A
ALA
135
A
CYS
346
A
CYS
118
A
ILE
353
A
ILE
125
A
ASP
289
A
ASP
61
A
ILE
293
A
ILE
65
A
LYS
321
A
LYS
93
A
ASP
326
A
ASP
98
A
MET
313
A
MET
85
A
TYR
318
A
TYR
90
A
ASN
339
A
ASN
111
A
HIS
340
A
HIS
112
A
LEU
374
A
LEU
146
A
TYR
375
A
TYR
147
B
MET
259
B
MET
31
B
ILE
264
B
ILE
36
B
GLY
268
B
GLY
40
B
ALA
273
B
ALA
45
B
PHE
282
B
PHE
54
B
GLU
285
B
GLU
57
B
VAL
356
B
VAL
128
B
ALA
363
B
ALA
135
B
CYS
346
B
CYS
118
B
ILE
353
B
ILE
125
B
ASP
289
B
ASP
61
B
ILE
293
B
ILE
65
B
LYS
321
B
LYS
93
B
ASP
326
B
ASP
98
B
MET
313
B
MET
85
B
TYR
318
B
TYR
90
B
ASN
339
B
ASN
111
B
HIS
340
B
HIS
112
B
LEU
374
B
LEU
146
B
TYR
375
B
TYR
147
BINDING SITE FOR RESIDUE SAM A 501
A
SAM
501
Software
17
BINDING SITE FOR RESIDUE SAM B 501
B
SAM
501
Software
17
A
GLY
266
A
GLY
38
17
1_555
A
LYS
267
A
LYS
39
17
1_555
A
ARG
269
A
ARG
41
17
1_555
A
CYS
311
A
CYS
83
17
1_555
A
TYR
312
A
TYR
84
17
1_555
A
ARG
336
A
ARG
108
17
1_555
A
LEU
337
A
LEU
109
17
1_555
A
ILE
338
A
ILE
110
17
1_555
A
ASN
339
A
ASN
111
17
1_555
A
HIS
340
A
HIS
112
17
1_555
A
TYR
377
A
TYR
149
17
1_555
A
TRP
390
A
TRP
162
17
1_555
A
HOH
609
BA
HOH
17
1_555
A
HOH
613
BA
HOH
17
1_555
A
HOH
615
BA
HOH
17
1_555
A
HOH
618
BA
HOH
17
1_555
B
ALA
387
B
ALA
159
17
1_555
A
ALA
387
A
ALA
159
17
1_555
A
HOH
601
BA
HOH
17
1_555
A
HOH
613
BA
HOH
17
1_555
B
GLY
266
B
GLY
38
17
1_555
B
LYS
267
B
LYS
39
17
1_555
B
ARG
269
B
ARG
41
17
1_555
B
CYS
311
B
CYS
83
17
1_555
B
TYR
312
B
TYR
84
17
1_555
B
ARG
336
B
ARG
108
17
1_555
B
LEU
337
B
LEU
109
17
1_555
B
ILE
338
B
ILE
110
17
1_555
B
ASN
339
B
ASN
111
17
1_555
B
HIS
340
B
HIS
112
17
1_555
B
TYR
377
B
TYR
149
17
1_555
B
TRP
390
B
TRP
162
17
1_555
B
HOH
611
CA
HOH
17
1_555
B
HOH
621
CA
HOH
17
1_555
178
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