0.018270 0.000000 0.003238 0.000000 0.020499 0.000000 0.000000 0.000000 0.012902 0.00000 0.00000 0.00000 Dong, A. Dombrovski, L. Li, Y. Tempel, W. Bountra, C. Arrowsmith, C.H. Edwards, A.M. Brown, P.J. Wu, H. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.05 90.00 54.734 48.782 78.713 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Crystal structure of methyltransferase domain of human PR domain-containing protein 9 100 1 CCD 2012-11-23 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.97912 1.0 19-ID APS 0.97912 SYNCHROTRON APS BEAMLINE 19-ID 25344.838 Histone-lysine N-methyltransferase PRDM9 2.1.1.43 UNP residues 195-415 2 man polymer 65.409 ZINC ION 4 syn non-polymer UNKNOWN ATOM OR ION 24 syn non-polymer 18.015 water 59 nat water PR domain zinc finger protein 9, PR domain-containing protein 9 no yes SEPQDDDYLYCE(MSE)CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLG LHFGPYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANW(MSE)RYVNCARDDEEQNLVAFQYHRQIFYRTCRV IRPGCELLVWYGDEYGQELGIKWGSKWKKEL(MSE)AGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PRDM9, PFM6 9606 Homo sapiens 511693 Escherichia coli BL21 plasmid pET28-MHL 1 2.04 39.74 VAPOR DIFFUSION, HANGING DROP 5.5 23% PEG 3350, 0.2 M AMMONIUM ACETATE, 0.1 M BisTris pH5.5, vapor diffusion hanging drop, temperature 291K 291 Structural Genomics Consortium SGC software repository Initial release Refinement description 1 0 2013-02-13 1 1 2017-11-15 Y RCSB Y RCSB 2012-12-21 REL REL ZN ZINC ION UNX UNKNOWN ATOM OR ION HOH water ZN 1000 2 ZN ZN 501 A ZN 1001 2 ZN ZN 502 A UNX 1002 3 UNX UNX 503 A UNX 1003 3 UNX UNX 504 A UNX 1005 3 UNX UNX 505 A UNX 1006 3 UNX UNX 506 A UNX 1007 3 UNX UNX 507 A UNX 1008 3 UNX UNX 508 A UNX 1009 3 UNX UNX 509 A UNX 1010 3 UNX UNX 510 A UNX 1014 3 UNX UNX 511 A UNX 1015 3 UNX UNX 512 A UNX 1016 3 UNX UNX 513 A UNX 1017 3 UNX UNX 514 A UNX 1020 3 UNX UNX 515 A UNX 1021 3 UNX UNX 516 A UNX 1022 3 UNX UNX 517 A UNX 1023 3 UNX UNX 518 A ZN 1000 2 ZN ZN 501 B ZN 1001 2 ZN ZN 502 B UNX 1001 3 UNX UNX 503 B UNX 1004 3 UNX UNX 504 B UNX 1011 3 UNX UNX 505 B UNX 1012 3 UNX UNX 506 B UNX 1013 3 UNX UNX 507 B UNX 1018 3 UNX UNX 508 B UNX 1019 3 UNX UNX 509 B UNX 1024 3 UNX UNX 510 B HOH 1 4 HOH HOH 601 A HOH 3 4 HOH HOH 602 A HOH 5 4 HOH HOH 603 A HOH 6 4 HOH HOH 604 A HOH 7 4 HOH HOH 605 A HOH 8 4 HOH HOH 606 A HOH 9 4 HOH HOH 607 A HOH 11 4 HOH HOH 608 A HOH 12 4 HOH HOH 609 A HOH 13 4 HOH HOH 610 A HOH 15 4 HOH HOH 611 A HOH 16 4 HOH HOH 612 A HOH 17 4 HOH HOH 613 A HOH 18 4 HOH HOH 614 A HOH 19 4 HOH HOH 615 A HOH 21 4 HOH HOH 616 A HOH 22 4 HOH HOH 617 A HOH 23 4 HOH HOH 618 A HOH 24 4 HOH HOH 619 A HOH 25 4 HOH HOH 620 A HOH 26 4 HOH HOH 621 A HOH 27 4 HOH HOH 622 A HOH 28 4 HOH HOH 623 A HOH 30 4 HOH HOH 624 A HOH 31 4 HOH HOH 625 A HOH 33 4 HOH HOH 626 A HOH 34 4 HOH HOH 627 A HOH 35 4 HOH HOH 628 A HOH 36 4 HOH HOH 629 A HOH 37 4 HOH HOH 630 A HOH 45 4 HOH HOH 631 A HOH 46 4 HOH HOH 632 A HOH 47 4 HOH HOH 633 A HOH 48 4 HOH HOH 634 A HOH 49 4 HOH HOH 635 A HOH 50 4 HOH HOH 636 A HOH 51 4 HOH HOH 637 A HOH 52 4 HOH HOH 638 A HOH 53 4 HOH HOH 639 A HOH 55 4 HOH HOH 640 A HOH 58 4 HOH HOH 641 A HOH 59 4 HOH HOH 642 A HOH 2 4 HOH HOH 601 B HOH 4 4 HOH HOH 602 B HOH 10 4 HOH HOH 603 B HOH 14 4 HOH HOH 604 B HOH 20 4 HOH HOH 605 B HOH 29 4 HOH HOH 606 B HOH 32 4 HOH HOH 607 B HOH 38 4 HOH HOH 608 B HOH 39 4 HOH HOH 609 B HOH 40 4 HOH HOH 610 B HOH 41 4 HOH HOH 611 B HOH 42 4 HOH HOH 612 B HOH 43 4 HOH HOH 613 B HOH 54 4 HOH HOH 614 B HOH 56 4 HOH HOH 615 B HOH 57 4 HOH HOH 616 B HOH 60 4 HOH HOH 617 B SER 195 n 1 SER 195 A GLU 196 n 2 GLU 196 A PRO 197 n 3 PRO 197 A GLN 198 n 4 GLN 198 A ASP 199 n 5 ASP 199 A ASP 200 n 6 ASP 200 A ASP 201 n 7 ASP 201 A TYR 202 n 8 TYR 202 A LEU 203 n 9 LEU 203 A TYR 204 n 10 TYR 204 A CYS 205 n 11 CYS 205 A GLU 206 n 12 GLU 206 A MSE 207 n 13 MSE 207 A CYS 208 n 14 CYS 208 A GLN 209 n 15 GLN 209 A ASN 210 n 16 ASN 210 A PHE 211 n 17 PHE 211 A PHE 212 n 18 PHE 212 A ILE 213 n 19 ILE 213 A ASP 214 n 20 ASP 214 A SER 215 n 21 SER 215 A CYS 216 n 22 CYS 216 A ALA 217 n 23 ALA 217 A ALA 218 n 24 ALA 218 A HIS 219 n 25 HIS 219 A GLY 220 n 26 GLY 220 A PRO 221 n 27 PRO 221 A PRO 222 n 28 PRO 222 A THR 223 n 29 THR 223 A PHE 224 n 30 PHE 224 A VAL 225 n 31 VAL 225 A LYS 226 n 32 LYS 226 A ASP 227 n 33 ASP 227 A SER 228 n 34 SER 228 A ALA 229 n 35 ALA 229 A VAL 230 n 36 VAL 230 A ASP 231 n 37 ASP 231 A LYS 232 n 38 LYS 232 A GLY 233 n 39 GLY 233 A HIS 234 n 40 HIS 234 A PRO 235 n 41 PRO 235 A ASN 236 n 42 ASN 236 A ARG 237 n 43 ARG 237 A SER 238 n 44 SER 238 A ALA 239 n 45 ALA 239 A LEU 240 n 46 LEU 240 A SER 241 n 47 SER 241 A LEU 242 n 48 LEU 242 A PRO 243 n 49 PRO 243 A PRO 244 n 50 PRO 244 A GLY 245 n 51 GLY 245 A LEU 246 n 52 LEU 246 A ARG 247 n 53 ARG 247 A ILE 248 n 54 ILE 248 A GLY 249 n 55 GLY 249 A PRO 250 n 56 PRO 250 A SER 251 n 57 SER 251 A GLY 252 n 58 GLY 252 A ILE 253 n 59 ILE 253 A PRO 254 n 60 PRO 254 A GLN 255 n 61 GLN 255 A ALA 256 n 62 ALA 256 A GLY 257 n 63 GLY 257 A LEU 258 n 64 LEU 258 A GLY 259 n 65 GLY 259 A VAL 260 n 66 VAL 260 A TRP 261 n 67 TRP 261 A ASN 262 n 68 ASN 262 A GLU 263 n 69 GLU 263 A ALA 264 n 70 ALA 264 A SER 265 n 71 SER 265 A ASP 266 n 72 ASP 266 A LEU 267 n 73 LEU 267 A PRO 268 n 74 PRO 268 A LEU 269 n 75 LEU 269 A GLY 270 n 76 GLY 270 A LEU 271 n 77 LEU 271 A HIS 272 n 78 HIS 272 A PHE 273 n 79 PHE 273 A GLY 274 n 80 GLY 274 A PRO 275 n 81 PRO 275 A TYR 276 n 82 TYR 276 A GLU 277 n 83 GLU 277 A GLY 278 n 84 GLY 278 A ARG 279 n 85 ARG 279 A ILE 280 n 86 ILE 280 A THR 281 n 87 THR 281 A GLU 282 n 88 GLU 282 A ASP 283 n 89 ASP 283 A GLU 284 n 90 GLU 284 A GLU 285 n 91 GLU 285 A ALA 286 n 92 ALA 286 A ALA 287 n 93 ALA 287 A ASN 288 n 94 ASN 288 A ASN 289 n 95 ASN 289 A GLY 290 n 96 GLY 290 A TYR 291 n 97 TYR 291 A SER 292 n 98 SER 292 A TRP 293 n 99 TRP 293 A LEU 294 n 100 LEU 294 A ILE 295 n 101 ILE 295 A THR 296 n 102 THR 296 A LYS 297 n 103 LYS 297 A GLY 298 n 104 GLY 298 A ARG 299 n 105 ARG 299 A ASN 300 n 106 ASN 300 A CYS 301 n 107 CYS 301 A TYR 302 n 108 TYR 302 A GLU 303 n 109 GLU 303 A TYR 304 n 110 TYR 304 A VAL 305 n 111 VAL 305 A ASP 306 n 112 ASP 306 A GLY 307 n 113 GLY 307 A LYS 308 n 114 LYS 308 A ASP 309 n 115 ASP 309 A LYS 310 n 116 LYS 310 A SER 311 n 117 SER 311 A TRP 312 n 118 TRP 312 A ALA 313 n 119 ALA 313 A ASN 314 n 120 ASN 314 A TRP 315 n 121 TRP 315 A MSE 316 n 122 MSE 316 A ARG 317 n 123 ARG 317 A TYR 318 n 124 TYR 318 A VAL 319 n 125 VAL 319 A ASN 320 n 126 ASN 320 A CYS 321 n 127 CYS 321 A ALA 322 n 128 ALA 322 A ARG 323 n 129 ARG 323 A ASP 324 n 130 ASP 324 A ASP 325 n 131 ASP 325 A GLU 326 n 132 GLU 326 A GLU 327 n 133 GLU 327 A GLN 328 n 134 GLN 328 A ASN 329 n 135 ASN 329 A LEU 330 n 136 LEU 330 A VAL 331 n 137 VAL 331 A ALA 332 n 138 ALA 332 A PHE 333 n 139 PHE 333 A GLN 334 n 140 GLN 334 A TYR 335 n 141 TYR 335 A HIS 336 n 142 HIS 336 A ARG 337 n 143 ARG 337 A GLN 338 n 144 GLN 338 A ILE 339 n 145 ILE 339 A PHE 340 n 146 PHE 340 A TYR 341 n 147 TYR 341 A ARG 342 n 148 ARG 342 A THR 343 n 149 THR 343 A CYS 344 n 150 CYS 344 A ARG 345 n 151 ARG 345 A VAL 346 n 152 VAL 346 A ILE 347 n 153 ILE 347 A ARG 348 n 154 ARG 348 A PRO 349 n 155 PRO 349 A GLY 350 n 156 GLY 350 A CYS 351 n 157 CYS 351 A GLU 352 n 158 GLU 352 A LEU 353 n 159 LEU 353 A LEU 354 n 160 LEU 354 A VAL 355 n 161 VAL 355 A TRP 356 n 162 TRP 356 A TYR 357 n 163 TYR 357 A GLY 358 n 164 GLY 358 A ASP 359 n 165 ASP 359 A GLU 360 n 166 GLU 360 A TYR 361 n 167 TYR 361 A GLY 362 n 168 GLY 362 A GLN 363 n 169 GLN 363 A GLU 364 n 170 GLU 364 A LEU 365 n 171 LEU 365 A GLY 366 n 172 GLY 366 A ILE 367 n 173 ILE 367 A LYS 368 n 174 LYS 368 A TRP 369 n 175 TRP 369 A GLY 370 n 176 GLY 370 A SER 371 n 177 SER 371 A LYS 372 n 178 LYS 372 A TRP 373 n 179 TRP 373 A LYS 374 n 180 LYS 374 A LYS 375 n 181 LYS 375 A GLU 376 n 182 GLU 376 A LEU 377 n 183 LEU 377 A MSE 378 n 184 MSE 378 A n 185 379 A n 186 380 A n 187 381 A n 188 382 A PRO 383 n 189 PRO 383 A LYS 384 n 190 LYS 384 A PRO 385 n 191 PRO 385 A GLU 386 n 192 GLU 386 A ILE 387 n 193 ILE 387 A HIS 388 n 194 HIS 388 A PRO 389 n 195 PRO 389 A CYS 390 n 196 CYS 390 A PRO 391 n 197 PRO 391 A SER 392 n 198 SER 392 A CYS 393 n 199 CYS 393 A CYS 394 n 200 CYS 394 A LEU 395 n 201 LEU 395 A ALA 396 n 202 ALA 396 A PHE 397 n 203 PHE 397 A SER 398 n 204 SER 398 A SER 399 n 205 SER 399 A GLN 400 n 206 GLN 400 A LYS 401 n 207 LYS 401 A PHE 402 n 208 PHE 402 A LEU 403 n 209 LEU 403 A SER 404 n 210 SER 404 A GLN 405 n 211 GLN 405 A HIS 406 n 212 HIS 406 A VAL 407 n 213 VAL 407 A GLU 408 n 214 GLU 408 A ARG 409 n 215 ARG 409 A ASN 410 n 216 ASN 410 A HIS 411 n 217 HIS 411 A SER 412 n 218 SER 412 A SER 413 n 219 SER 413 A n 220 414 A n 221 415 A SER 195 n 1 SER 195 B GLU 196 n 2 GLU 196 B PRO 197 n 3 PRO 197 B GLN 198 n 4 GLN 198 B ASP 199 n 5 ASP 199 B ASP 200 n 6 ASP 200 B ASP 201 n 7 ASP 201 B TYR 202 n 8 TYR 202 B LEU 203 n 9 LEU 203 B TYR 204 n 10 TYR 204 B CYS 205 n 11 CYS 205 B GLU 206 n 12 GLU 206 B MSE 207 n 13 MSE 207 B CYS 208 n 14 CYS 208 B GLN 209 n 15 GLN 209 B ASN 210 n 16 ASN 210 B PHE 211 n 17 PHE 211 B PHE 212 n 18 PHE 212 B ILE 213 n 19 ILE 213 B ASP 214 n 20 ASP 214 B SER 215 n 21 SER 215 B CYS 216 n 22 CYS 216 B ALA 217 n 23 ALA 217 B ALA 218 n 24 ALA 218 B HIS 219 n 25 HIS 219 B GLY 220 n 26 GLY 220 B PRO 221 n 27 PRO 221 B PRO 222 n 28 PRO 222 B THR 223 n 29 THR 223 B PHE 224 n 30 PHE 224 B VAL 225 n 31 VAL 225 B LYS 226 n 32 LYS 226 B ASP 227 n 33 ASP 227 B SER 228 n 34 SER 228 B ALA 229 n 35 ALA 229 B VAL 230 n 36 VAL 230 B ASP 231 n 37 ASP 231 B LYS 232 n 38 LYS 232 B GLY 233 n 39 GLY 233 B HIS 234 n 40 HIS 234 B PRO 235 n 41 PRO 235 B ASN 236 n 42 ASN 236 B ARG 237 n 43 ARG 237 B SER 238 n 44 SER 238 B ALA 239 n 45 ALA 239 B LEU 240 n 46 LEU 240 B SER 241 n 47 SER 241 B LEU 242 n 48 LEU 242 B PRO 243 n 49 PRO 243 B PRO 244 n 50 PRO 244 B GLY 245 n 51 GLY 245 B LEU 246 n 52 LEU 246 B ARG 247 n 53 ARG 247 B ILE 248 n 54 ILE 248 B GLY 249 n 55 GLY 249 B PRO 250 n 56 PRO 250 B SER 251 n 57 SER 251 B GLY 252 n 58 GLY 252 B ILE 253 n 59 ILE 253 B PRO 254 n 60 PRO 254 B GLN 255 n 61 GLN 255 B ALA 256 n 62 ALA 256 B GLY 257 n 63 GLY 257 B LEU 258 n 64 LEU 258 B GLY 259 n 65 GLY 259 B VAL 260 n 66 VAL 260 B TRP 261 n 67 TRP 261 B ASN 262 n 68 ASN 262 B GLU 263 n 69 GLU 263 B ALA 264 n 70 ALA 264 B SER 265 n 71 SER 265 B ASP 266 n 72 ASP 266 B LEU 267 n 73 LEU 267 B PRO 268 n 74 PRO 268 B LEU 269 n 75 LEU 269 B GLY 270 n 76 GLY 270 B LEU 271 n 77 LEU 271 B HIS 272 n 78 HIS 272 B PHE 273 n 79 PHE 273 B GLY 274 n 80 GLY 274 B PRO 275 n 81 PRO 275 B TYR 276 n 82 TYR 276 B GLU 277 n 83 GLU 277 B GLY 278 n 84 GLY 278 B ARG 279 n 85 ARG 279 B ILE 280 n 86 ILE 280 B THR 281 n 87 THR 281 B GLU 282 n 88 GLU 282 B ASP 283 n 89 ASP 283 B GLU 284 n 90 GLU 284 B GLU 285 n 91 GLU 285 B ALA 286 n 92 ALA 286 B ALA 287 n 93 ALA 287 B ASN 288 n 94 ASN 288 B ASN 289 n 95 ASN 289 B GLY 290 n 96 GLY 290 B TYR 291 n 97 TYR 291 B SER 292 n 98 SER 292 B TRP 293 n 99 TRP 293 B LEU 294 n 100 LEU 294 B ILE 295 n 101 ILE 295 B THR 296 n 102 THR 296 B LYS 297 n 103 LYS 297 B GLY 298 n 104 GLY 298 B ARG 299 n 105 ARG 299 B ASN 300 n 106 ASN 300 B CYS 301 n 107 CYS 301 B TYR 302 n 108 TYR 302 B GLU 303 n 109 GLU 303 B TYR 304 n 110 TYR 304 B VAL 305 n 111 VAL 305 B ASP 306 n 112 ASP 306 B GLY 307 n 113 GLY 307 B LYS 308 n 114 LYS 308 B ASP 309 n 115 ASP 309 B LYS 310 n 116 LYS 310 B SER 311 n 117 SER 311 B TRP 312 n 118 TRP 312 B ALA 313 n 119 ALA 313 B ASN 314 n 120 ASN 314 B TRP 315 n 121 TRP 315 B MSE 316 n 122 MSE 316 B ARG 317 n 123 ARG 317 B TYR 318 n 124 TYR 318 B VAL 319 n 125 VAL 319 B ASN 320 n 126 ASN 320 B CYS 321 n 127 CYS 321 B ALA 322 n 128 ALA 322 B ARG 323 n 129 ARG 323 B ASP 324 n 130 ASP 324 B ASP 325 n 131 ASP 325 B GLU 326 n 132 GLU 326 B GLU 327 n 133 GLU 327 B GLN 328 n 134 GLN 328 B ASN 329 n 135 ASN 329 B LEU 330 n 136 LEU 330 B VAL 331 n 137 VAL 331 B ALA 332 n 138 ALA 332 B PHE 333 n 139 PHE 333 B GLN 334 n 140 GLN 334 B TYR 335 n 141 TYR 335 B HIS 336 n 142 HIS 336 B ARG 337 n 143 ARG 337 B GLN 338 n 144 GLN 338 B ILE 339 n 145 ILE 339 B PHE 340 n 146 PHE 340 B TYR 341 n 147 TYR 341 B ARG 342 n 148 ARG 342 B THR 343 n 149 THR 343 B CYS 344 n 150 CYS 344 B ARG 345 n 151 ARG 345 B VAL 346 n 152 VAL 346 B ILE 347 n 153 ILE 347 B ARG 348 n 154 ARG 348 B PRO 349 n 155 PRO 349 B GLY 350 n 156 GLY 350 B CYS 351 n 157 CYS 351 B GLU 352 n 158 GLU 352 B LEU 353 n 159 LEU 353 B LEU 354 n 160 LEU 354 B VAL 355 n 161 VAL 355 B TRP 356 n 162 TRP 356 B TYR 357 n 163 TYR 357 B GLY 358 n 164 GLY 358 B ASP 359 n 165 ASP 359 B GLU 360 n 166 GLU 360 B TYR 361 n 167 TYR 361 B GLY 362 n 168 GLY 362 B GLN 363 n 169 GLN 363 B GLU 364 n 170 GLU 364 B LEU 365 n 171 LEU 365 B GLY 366 n 172 GLY 366 B ILE 367 n 173 ILE 367 B LYS 368 n 174 LYS 368 B TRP 369 n 175 TRP 369 B GLY 370 n 176 GLY 370 B SER 371 n 177 SER 371 B LYS 372 n 178 LYS 372 B TRP 373 n 179 TRP 373 B LYS 374 n 180 LYS 374 B LYS 375 n 181 LYS 375 B GLU 376 n 182 GLU 376 B LEU 377 n 183 LEU 377 B MSE 378 n 184 MSE 378 B n 185 379 B n 186 380 B ARG 381 n 187 ARG 381 B GLU 382 n 188 GLU 382 B PRO 383 n 189 PRO 383 B LYS 384 n 190 LYS 384 B PRO 385 n 191 PRO 385 B GLU 386 n 192 GLU 386 B ILE 387 n 193 ILE 387 B HIS 388 n 194 HIS 388 B PRO 389 n 195 PRO 389 B CYS 390 n 196 CYS 390 B PRO 391 n 197 PRO 391 B SER 392 n 198 SER 392 B CYS 393 n 199 CYS 393 B CYS 394 n 200 CYS 394 B LEU 395 n 201 LEU 395 B ALA 396 n 202 ALA 396 B PHE 397 n 203 PHE 397 B SER 398 n 204 SER 398 B SER 399 n 205 SER 399 B GLN 400 n 206 GLN 400 B LYS 401 n 207 LYS 401 B PHE 402 n 208 PHE 402 B LEU 403 n 209 LEU 403 B SER 404 n 210 SER 404 B GLN 405 n 211 GLN 405 B HIS 406 n 212 HIS 406 B VAL 407 n 213 VAL 407 B GLU 408 n 214 GLU 408 B ARG 409 n 215 ARG 409 B ASN 410 n 216 ASN 410 B HIS 411 n 217 HIS 411 B n 218 412 B n 219 413 B n 220 414 B n 221 415 B 3.8416 -2.2825 0.0946 3.2820 -0.3316 0.9260 -0.0964 -0.1070 0.1347 0.1125 0.0702 -0.1115 -0.1320 -0.0408 0.0262 0.0342 -0.0061 -0.0162 0.0332 -0.0212 0.0631 refined 10.2363 -0.4864 0.3803 X-RAY DIFFRACTION 2.4132 0.6363 -0.5177 3.5819 -0.7734 1.3689 0.0458 0.0920 0.1114 -0.1552 -0.0912 -0.1592 0.0791 0.0747 0.0454 0.1930 0.0643 0.0475 0.1962 0.0246 0.1053 refined 30.5330 -5.6112 36.1270 X-RAY DIFFRACTION A 195 A 413 X-RAY DIFFRACTION 1 A 501 A 502 X-RAY DIFFRACTION 1 B 195 B 411 X-RAY DIFFRACTION 2 B 501 B 502 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric A HIS 406 A NE2 HIS 212 1_555 A ZN 502 D ZN ZN 1_555 A HIS 411 A NE2 HIS 217 1_555 100.9 A HIS 406 A NE2 HIS 212 1_555 A ZN 502 D ZN ZN 1_555 A CYS 393 A SG CYS 199 1_555 111.2 A HIS 411 A NE2 HIS 217 1_555 A ZN 502 D ZN ZN 1_555 A CYS 393 A SG CYS 199 1_555 117.7 A HIS 406 A NE2 HIS 212 1_555 A ZN 502 D ZN ZN 1_555 A CYS 390 A SG CYS 196 1_555 98.8 A HIS 411 A NE2 HIS 217 1_555 A ZN 502 D ZN ZN 1_555 A CYS 390 A SG CYS 196 1_555 102.4 A CYS 393 A SG CYS 199 1_555 A ZN 502 D ZN ZN 1_555 A CYS 390 A SG CYS 196 1_555 122.3 B HIS 406 B NE2 HIS 212 1_555 B ZN 502 V ZN ZN 1_555 B HIS 411 B NE2 HIS 217 1_555 104.3 B HIS 406 B NE2 HIS 212 1_555 B ZN 502 V ZN ZN 1_555 B CYS 390 B SG CYS 196 1_555 109.4 B HIS 411 B NE2 HIS 217 1_555 B ZN 502 V ZN ZN 1_555 B CYS 390 B SG CYS 196 1_555 105.8 B HIS 406 B NE2 HIS 212 1_555 B ZN 502 V ZN ZN 1_555 B CYS 393 B SG CYS 199 1_555 102.4 B HIS 411 B NE2 HIS 217 1_555 B ZN 502 V ZN ZN 1_555 B CYS 393 B SG CYS 199 1_555 116.0 B CYS 390 B SG CYS 196 1_555 B ZN 502 V ZN ZN 1_555 B CYS 393 B SG CYS 199 1_555 118.0 B HIS 219 B ND1 HIS 25 1_555 B ZN 501 U ZN ZN 1_555 B CYS 205 B SG CYS 11 1_555 104.9 B HIS 219 B ND1 HIS 25 1_555 B ZN 501 U ZN ZN 1_555 B CYS 216 B SG CYS 22 1_555 120.9 B CYS 205 B SG CYS 11 1_555 B ZN 501 U ZN ZN 1_555 B CYS 216 B SG CYS 22 1_555 125.1 B HIS 219 B ND1 HIS 25 1_555 B ZN 501 U ZN ZN 1_555 B CYS 208 B SG CYS 14 1_555 101.8 B CYS 205 B SG CYS 11 1_555 B ZN 501 U ZN ZN 1_555 B CYS 208 B SG CYS 14 1_555 113.9 B CYS 216 B SG CYS 22 1_555 B ZN 501 U ZN ZN 1_555 B CYS 208 B SG CYS 14 1_555 86.1 A HIS 219 A ND1 HIS 25 1_555 A ZN 501 C ZN ZN 1_555 A CYS 205 A SG CYS 11 1_555 105.8 A HIS 219 A ND1 HIS 25 1_555 A ZN 501 C ZN ZN 1_555 A CYS 216 A SG CYS 22 1_555 111.6 A CYS 205 A SG CYS 11 1_555 A ZN 501 C ZN ZN 1_555 A CYS 216 A SG CYS 22 1_555 121.8 A HIS 219 A ND1 HIS 25 1_555 A ZN 501 C ZN ZN 1_555 A CYS 208 A SG CYS 14 1_555 97.7 A CYS 205 A SG CYS 11 1_555 A ZN 501 C ZN ZN 1_555 A CYS 208 A SG CYS 14 1_555 114.6 A CYS 216 A SG CYS 22 1_555 A ZN 501 C ZN ZN 1_555 A CYS 208 A SG CYS 14 1_555 102.9 A MSE 207 SELENOMETHIONINE A MSE 13 MET A MSE 316 SELENOMETHIONINE A MSE 122 MET A MSE 378 SELENOMETHIONINE A MSE 184 MET B MSE 207 SELENOMETHIONINE B MSE 13 MET B MSE 316 SELENOMETHIONINE B MSE 122 MET B MSE 378 SELENOMETHIONINE B MSE 184 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 205 A N CYS 11 A O ASN 210 A O ASN 16 A N VAL 225 A N VAL 31 A O HIS 272 A O HIS 78 A N PHE 273 A N PHE 79 A O TYR 341 A O TYR 147 A O GLN 338 A O GLN 144 A N TYR 335 A N TYR 141 A N ALA 332 A N ALA 138 A O TRP 356 A O TRP 162 A O VAL 355 A O VAL 161 A N ASN 320 A N ASN 126 A N ARG 247 A N ARG 53 A O TRP 261 A O TRP 67 A N ARG 279 A N ARG 85 A O ASP 306 A O ASP 112 A O GLU 303 A O GLU 109 A N ILE 295 A N ILE 101 A N HIS 388 A N HIS 194 A O PHE 397 A O PHE 203 B N CYS 205 B N CYS 11 B O ASN 210 B O ASN 16 B N VAL 225 B N VAL 31 B O HIS 272 B O HIS 78 B N PHE 273 B N PHE 79 B O TYR 341 B O TYR 147 B O GLN 338 B O GLN 144 B N TYR 335 B N TYR 141 B N ALA 332 B N ALA 138 B O TRP 356 B O TRP 162 B O VAL 355 B O VAL 161 B N ASN 320 B N ASN 126 B N ARG 247 B N ARG 53 B O TRP 261 B O TRP 67 B N THR 281 B N THR 87 B O TYR 304 B O TYR 110 B O GLU 303 B O GLU 109 B N ILE 295 B N ILE 101 B N HIS 388 B N HIS 194 B O PHE 397 B O PHE 203 1 A CG ASP 214 A CG ASP 20 1 Y 1 A OD1 ASP 214 A OD1 ASP 20 1 Y 1 A OD2 ASP 214 A OD2 ASP 20 1 Y 1 A CG LYS 226 A CG LYS 32 1 Y 1 A CD LYS 226 A CD LYS 32 1 Y 1 A CE LYS 226 A CE LYS 32 1 Y 1 A NZ LYS 226 A NZ LYS 32 1 Y 1 A CG ASP 231 A CG ASP 37 1 Y 1 A OD1 ASP 231 A OD1 ASP 37 1 Y 1 A OD2 ASP 231 A OD2 ASP 37 1 Y 1 A CG LYS 232 A CG LYS 38 1 Y 1 A CD LYS 232 A CD LYS 38 1 Y 1 A CE LYS 232 A CE LYS 38 1 Y 1 A NZ LYS 232 A NZ LYS 38 1 Y 1 A CG HIS 234 A CG HIS 40 1 Y 1 A ND1 HIS 234 A ND1 HIS 40 1 Y 1 A CD2 HIS 234 A CD2 HIS 40 1 Y 1 A CE1 HIS 234 A CE1 HIS 40 1 Y 1 A NE2 HIS 234 A NE2 HIS 40 1 Y 1 A CG ARG 279 A CG ARG 85 1 Y 1 A CD ARG 279 A CD ARG 85 1 Y 1 A NE ARG 279 A NE ARG 85 1 Y 1 A CZ ARG 279 A CZ ARG 85 1 Y 1 A NH1 ARG 279 A NH1 ARG 85 1 Y 1 A NH2 ARG 279 A NH2 ARG 85 1 Y 1 A CG GLU 284 A CG GLU 90 1 Y 1 A CD GLU 284 A CD GLU 90 1 Y 1 A OE1 GLU 284 A OE1 GLU 90 1 Y 1 A OE2 GLU 284 A OE2 GLU 90 1 Y 1 A CG GLU 285 A CG GLU 91 1 Y 1 A CD GLU 285 A CD GLU 91 1 Y 1 A OE1 GLU 285 A OE1 GLU 91 1 Y 1 A OE2 GLU 285 A OE2 GLU 91 1 Y 1 A CG ASN 288 A CG ASN 94 1 Y 1 A OD1 ASN 288 A OD1 ASN 94 1 Y 1 A ND2 ASN 288 A ND2 ASN 94 1 Y 1 A CG GLU 303 A CG GLU 109 1 Y 1 A CD GLU 303 A CD GLU 109 1 Y 1 A OE1 GLU 303 A OE1 GLU 109 1 Y 1 A OE2 GLU 303 A OE2 GLU 109 1 Y 1 A CG LYS 308 A CG LYS 114 1 Y 1 A CD LYS 308 A CD LYS 114 1 Y 1 A CE LYS 308 A CE LYS 114 1 Y 1 A NZ LYS 308 A NZ LYS 114 1 Y 1 A OG SER 311 A OG SER 117 1 Y 1 A CD ARG 348 A CD ARG 154 1 Y 1 A NE ARG 348 A NE ARG 154 1 Y 1 A CZ ARG 348 A CZ ARG 154 1 Y 1 A NH1 ARG 348 A NH1 ARG 154 1 Y 1 A NH2 ARG 348 A NH2 ARG 154 1 Y 1 A CG GLN 363 A CG GLN 169 1 Y 1 A CD GLN 363 A CD GLN 169 1 Y 1 A OE1 GLN 363 A OE1 GLN 169 1 Y 1 A NE2 GLN 363 A NE2 GLN 169 1 Y 1 A CD GLU 364 A CD GLU 170 1 Y 1 A OE1 GLU 364 A OE1 GLU 170 1 Y 1 A OE2 GLU 364 A OE2 GLU 170 1 Y 1 A CG1 ILE 367 A CG1 ILE 173 1 Y 1 A CG2 ILE 367 A CG2 ILE 173 1 Y 1 A CD1 ILE 367 A CD1 ILE 173 1 Y 1 A CG LYS 372 A CG LYS 178 1 Y 1 A CD LYS 372 A CD LYS 178 1 Y 1 A CE LYS 372 A CE LYS 178 1 Y 1 A NZ LYS 372 A NZ LYS 178 1 Y 1 A CG GLU 376 A CG GLU 182 1 Y 1 A CD GLU 376 A CD GLU 182 1 Y 1 A OE1 GLU 376 A OE1 GLU 182 1 Y 1 A OE2 GLU 376 A OE2 GLU 182 1 Y 1 A CG LYS 384 A CG LYS 190 1 Y 1 A CD LYS 384 A CD LYS 190 1 Y 1 A CE LYS 384 A CE LYS 190 1 Y 1 A NZ LYS 384 A NZ LYS 190 1 Y 1 A CG1 ILE 387 A CG1 ILE 193 1 Y 1 A CD1 ILE 387 A CD1 ILE 193 1 Y 1 A CD GLN 400 A CD GLN 206 1 Y 1 A OE1 GLN 400 A OE1 GLN 206 1 Y 1 A NE2 GLN 400 A NE2 GLN 206 1 Y 1 A CD LYS 401 A CD LYS 207 1 Y 1 A CE LYS 401 A CE LYS 207 1 Y 1 A NZ LYS 401 A NZ LYS 207 1 Y 1 A CD ARG 409 A CD ARG 215 1 Y 1 A NE ARG 409 A NE ARG 215 1 Y 1 A CZ ARG 409 A CZ ARG 215 1 Y 1 A NH1 ARG 409 A NH1 ARG 215 1 Y 1 A NH2 ARG 409 A NH2 ARG 215 1 Y 1 B OG SER 195 B OG SER 1 1 Y 1 B CG ASP 214 B CG ASP 20 1 Y 1 B OD1 ASP 214 B OD1 ASP 20 1 Y 1 B OD2 ASP 214 B OD2 ASP 20 1 Y 1 B CG LYS 226 B CG LYS 32 1 Y 1 B CD LYS 226 B CD LYS 32 1 Y 1 B CE LYS 226 B CE LYS 32 1 Y 1 B NZ LYS 226 B NZ LYS 32 1 Y 1 B CG ASP 231 B CG ASP 37 1 Y 1 B OD1 ASP 231 B OD1 ASP 37 1 Y 1 B OD2 ASP 231 B OD2 ASP 37 1 Y 1 B CG LYS 232 B CG LYS 38 1 Y 1 B CD LYS 232 B CD LYS 38 1 Y 1 B CE LYS 232 B CE LYS 38 1 Y 1 B NZ LYS 232 B NZ LYS 38 1 Y 1 B CG1 ILE 253 B CG1 ILE 59 1 Y 1 B CD1 ILE 253 B CD1 ILE 59 1 Y 1 B CG GLN 255 B CG GLN 61 1 Y 1 B CD GLN 255 B CD GLN 61 1 Y 1 B OE1 GLN 255 B OE1 GLN 61 1 Y 1 B NE2 GLN 255 B NE2 GLN 61 1 Y 1 B CD GLU 263 B CD GLU 69 1 Y 1 B OE1 GLU 263 B OE1 GLU 69 1 Y 1 B OE2 GLU 263 B OE2 GLU 69 1 Y 1 B CG1 ILE 280 B CG1 ILE 86 1 Y 1 B CG2 ILE 280 B CG2 ILE 86 1 Y 1 B CD1 ILE 280 B CD1 ILE 86 1 Y 1 B CG GLU 284 B CG GLU 90 1 Y 1 B CD GLU 284 B CD GLU 90 1 Y 1 B OE1 GLU 284 B OE1 GLU 90 1 Y 1 B OE2 GLU 284 B OE2 GLU 90 1 Y 1 B CG GLU 285 B CG GLU 91 1 Y 1 B CD GLU 285 B CD GLU 91 1 Y 1 B OE1 GLU 285 B OE1 GLU 91 1 Y 1 B OE2 GLU 285 B OE2 GLU 91 1 Y 1 B CE LYS 297 B CE LYS 103 1 Y 1 B NZ LYS 297 B NZ LYS 103 1 Y 1 B CG LYS 308 B CG LYS 114 1 Y 1 B CD LYS 308 B CD LYS 114 1 Y 1 B CE LYS 308 B CE LYS 114 1 Y 1 B NZ LYS 308 B NZ LYS 114 1 Y 1 B CE LYS 310 B CE LYS 116 1 Y 1 B NZ LYS 310 B NZ LYS 116 1 Y 1 B CG ARG 348 B CG ARG 154 1 Y 1 B CD ARG 348 B CD ARG 154 1 Y 1 B NE ARG 348 B NE ARG 154 1 Y 1 B CZ ARG 348 B CZ ARG 154 1 Y 1 B NH1 ARG 348 B NH1 ARG 154 1 Y 1 B NH2 ARG 348 B NH2 ARG 154 1 Y 1 B CG GLN 363 B CG GLN 169 1 Y 1 B CD GLN 363 B CD GLN 169 1 Y 1 B OE1 GLN 363 B OE1 GLN 169 1 Y 1 B NE2 GLN 363 B NE2 GLN 169 1 Y 1 B CD GLU 364 B CD GLU 170 1 Y 1 B OE1 GLU 364 B OE1 GLU 170 1 Y 1 B OE2 GLU 364 B OE2 GLU 170 1 Y 1 B CG1 ILE 367 B CG1 ILE 173 1 Y 1 B CG2 ILE 367 B CG2 ILE 173 1 Y 1 B CD1 ILE 367 B CD1 ILE 173 1 Y 1 B CG LYS 372 B CG LYS 178 1 Y 1 B CD LYS 372 B CD LYS 178 1 Y 1 B CE LYS 372 B CE LYS 178 1 Y 1 B NZ LYS 372 B NZ LYS 178 1 Y 1 B CG GLU 376 B CG GLU 182 1 Y 1 B CD GLU 376 B CD GLU 182 1 Y 1 B OE1 GLU 376 B OE1 GLU 182 1 Y 1 B OE2 GLU 376 B OE2 GLU 182 1 Y 1 B CG LEU 377 B CG LEU 183 1 Y 1 B CD1 LEU 377 B CD1 LEU 183 1 Y 1 B CD2 LEU 377 B CD2 LEU 183 1 Y 1 B CG ARG 381 B CG ARG 187 1 Y 1 B CD ARG 381 B CD ARG 187 1 Y 1 B NE ARG 381 B NE ARG 187 1 Y 1 B CZ ARG 381 B CZ ARG 187 1 Y 1 B NH1 ARG 381 B NH1 ARG 187 1 Y 1 B NH2 ARG 381 B NH2 ARG 187 1 Y 1 B CG LYS 384 B CG LYS 190 1 Y 1 B CD LYS 384 B CD LYS 190 1 Y 1 B CE LYS 384 B CE LYS 190 1 Y 1 B NZ LYS 384 B NZ LYS 190 1 Y 1 B CG GLU 386 B CG GLU 192 1 Y 1 B CD GLU 386 B CD GLU 192 1 Y 1 B OE1 GLU 386 B OE1 GLU 192 1 Y 1 B OE2 GLU 386 B OE2 GLU 192 1 Y 1 B CG LYS 401 B CG LYS 207 1 Y 1 B CD LYS 401 B CD LYS 207 1 Y 1 B CE LYS 401 B CE LYS 207 1 Y 1 B NZ LYS 401 B NZ LYS 207 1 Y 1 B CG GLU 408 B CG GLU 214 1 Y 1 B CD GLU 408 B CD GLU 214 1 Y 1 B OE1 GLU 408 B OE1 GLU 214 1 Y 1 B OE2 GLU 408 B OE2 GLU 214 1 Y 1 B CG ARG 409 B CG ARG 215 1 Y 1 B CD ARG 409 B CD ARG 215 1 Y 1 B NE ARG 409 B NE ARG 215 1 Y 1 B CZ ARG 409 B CZ ARG 215 1 Y 1 B NH1 ARG 409 B NH1 ARG 215 1 Y 1 B NH2 ARG 409 B NH2 ARG 215 1 Y 1 A ALA 379 A ALA 185 1 Y 1 A GLY 380 A GLY 186 1 Y 1 A ARG 381 A ARG 187 1 Y 1 A GLU 382 A GLU 188 1 Y 1 A GLN 414 A GLN 220 1 Y 1 A ASN 415 A ASN 221 1 Y 1 B ALA 379 B ALA 185 1 Y 1 B GLY 380 B GLY 186 1 Y 1 B SER 412 B SER 218 1 Y 1 B SER 413 B SER 219 1 Y 1 B GLN 414 B GLN 220 1 Y 1 B ASN 415 B ASN 221 1 Y 1 A A NH1 O ARG HOH 345 618 2.18 1 A A CE2 CD2 TRP TRP 356 356 0.073 0.012 1.409 1.482 N 1 B B CG CD2 HIS HIS 411 411 0.055 0.009 1.354 1.409 N 1 A ASP 214 81.76 -66.14 1 A GLN 255 79.93 -3.03 1 A GLU 263 -123.20 -54.62 1 A ASN 288 B 35.81 41.83 1 A HIS 411 -139.50 -41.84 1 A SER 412 -165.07 118.77 1 B GLU 196 -171.76 124.02 1 B ASP 214 73.33 -65.17 1 B GLU 263 -132.92 -60.29 1 B ASN 288 56.21 13.22 1 B ASN 300 45.50 28.82 1 B ASN 410 -158.14 29.39 119.000 50.9656 25.810 0.4500 0.0000 -0.3500 0.5600 0.0000 -1.1300 0.9560 0.9190 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED 0.2640 0.1964 0.1991 0.1991 2.1500 36.1900 911 21794 21794 4.2000 99.9 0.2603 0.1916 1.000 0.400 0.8295 13.1230 0.1640 0.2900 0.2333 RANDOM 1 THROUGHOUT 0.000 SAD 0.2900 0.2330 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 2.1500 36.1900 59 3362 28 0 3275 0.011 0.020 3413 0.001 0.020 2913 1.195 1.939 4650 0.719 3.004 6668 6.840 5.000 431 32.447 23.734 158 13.188 15.000 435 13.537 15.000 17 0.070 0.200 467 0.007 0.021 4000 0.001 0.020 839 0.3370 0.2310 2.2080 40 951 991 20 60.5400 39.1 2.15 50.000 4IJD 21804 21804 0 0 0.093 2.565 1 31.1 6.300 99.900 0.804 2.15 2.200 1089 1.015 1 5.200 99.700 0.769 2.200 2.240 1050 0.991 1 5.700 100.000 0.782 2.240 2.280 1103 1.059 1 6.000 99.900 0.614 2.280 2.330 1076 1.029 1 6.200 100.000 0.515 2.330 2.380 1081 1.070 1 6.300 100.000 0.421 2.380 2.430 1093 1.139 1 6.400 100.000 0.400 2.430 2.490 1071 1.122 1 6.400 100.000 0.346 2.490 2.560 1080 1.173 1 6.400 100.000 0.282 2.560 2.640 1077 1.217 1 6.500 100.000 0.229 2.640 2.720 1107 1.327 1 6.500 100.000 0.187 2.720 2.820 1075 1.440 1 6.500 100.000 0.155 2.820 2.930 1074 1.559 1 6.600 100.000 0.116 2.930 3.060 1083 1.852 1 6.600 100.000 0.099 3.060 3.230 1099 2.291 1 6.500 100.000 0.081 3.230 3.430 1110 2.889 1 6.500 100.000 0.073 3.430 3.690 1084 3.628 1 6.400 100.000 0.065 3.690 4.060 1095 4.313 1 6.300 100.000 0.059 4.060 4.650 1099 4.899 1 6.200 99.900 0.063 4.650 5.860 1110 6.093 1 6.100 99.900 0.066 5.860 50.000 1148 10.731 1 6.100 99.000 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection SBC-Collect data scaling HKL-3000 phasing SOLVE model building Coot 0.6.2 Histone-lysine N-methyltransferase PRDM9 (E.C.2.1.1.43) Crystal structure of methyltransferase domain of human PR domain-containing protein 9 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N A GLN 198 A GLN 4 HELX_P A TYR 202 A TYR 8 5 1 5 A ASN 236 A ASN 42 HELX_P A SER 241 A SER 47 1 2 6 A ASP 283 A ASP 89 HELX_P A ALA 287 A ALA 93 5 3 5 A ASN 314 A ASN 120 HELX_P A VAL 319 A VAL 125 5 4 6 A TYR 361 A TYR 167 HELX_P A LYS 368 A LYS 174 1 5 8 A LYS 372 A LYS 178 HELX_P A MSE 378 A MSE 184 1 6 7 A SER 399 A SER 205 HELX_P A HIS 411 A HIS 217 1 7 13 B GLN 198 B GLN 4 HELX_P B TYR 202 B TYR 8 5 8 5 B ASN 236 B ASN 42 HELX_P B LEU 242 B LEU 48 1 9 7 B ASP 283 B ASP 89 HELX_P B ALA 287 B ALA 93 5 10 5 B ASP 309 B ASP 115 HELX_P B ALA 313 B ALA 119 5 11 5 B ASN 314 B ASN 120 HELX_P B VAL 319 B VAL 125 5 12 6 B TYR 361 B TYR 167 HELX_P B LYS 368 B LYS 174 1 13 8 B LYS 372 B LYS 178 HELX_P B MSE 378 B MSE 184 1 14 7 B SER 399 B SER 205 HELX_P B HIS 411 B HIS 217 1 15 13 disulf 2.070 A CYS 351 A SG CYS 157 1_555 A CYS 394 A SG CYS 200 1_555 disulf 2.053 B CYS 351 B SG CYS 157 1_555 B CYS 394 B SG CYS 200 1_555 covale 1.329 A GLU 206 A C GLU 12 1_555 A MSE 207 A N MSE 13 1_555 covale 1.340 A MSE 207 A C MSE 13 1_555 A CYS 208 A N CYS 14 1_555 covale 1.326 A TRP 315 A C TRP 121 1_555 A MSE 316 A N MSE 122 1_555 covale 1.336 A MSE 316 A C MSE 122 1_555 A ARG 317 A N ARG 123 1_555 covale 1.333 A LEU 377 A C LEU 183 1_555 A MSE 378 A N MSE 184 1_555 covale 1.329 B GLU 206 B C GLU 12 1_555 B MSE 207 B N MSE 13 1_555 covale 1.331 B MSE 207 B C MSE 13 1_555 B CYS 208 B N CYS 14 1_555 covale 1.325 B TRP 315 B C TRP 121 1_555 B MSE 316 B N MSE 122 1_555 covale 1.329 B MSE 316 B C MSE 122 1_555 B ARG 317 B N ARG 123 1_555 covale 1.340 B LEU 377 B C LEU 183 1_555 B MSE 378 B N MSE 184 1_555 metalc 2.118 A HIS 406 A NE2 HIS 212 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.118 A HIS 411 A NE2 HIS 217 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.122 B HIS 406 B NE2 HIS 212 1_555 B ZN 502 V ZN ZN 1_555 metalc 2.156 B HIS 219 B ND1 HIS 25 1_555 B ZN 501 U ZN ZN 1_555 metalc 2.158 A HIS 219 A ND1 HIS 25 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.168 B HIS 411 B NE2 HIS 217 1_555 B ZN 502 V ZN ZN 1_555 metalc 2.257 A CYS 205 A SG CYS 11 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.276 A CYS 393 A SG CYS 199 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.293 A CYS 390 A SG CYS 196 1_555 A ZN 502 D ZN ZN 1_555 metalc 2.298 B CYS 205 B SG CYS 11 1_555 B ZN 501 U ZN ZN 1_555 metalc 2.303 A CYS 216 A SG CYS 22 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.329 B CYS 390 B SG CYS 196 1_555 B ZN 502 V ZN ZN 1_555 metalc 2.330 B CYS 393 B SG CYS 199 1_555 B ZN 502 V ZN ZN 1_555 metalc 2.353 A CYS 208 A SG CYS 14 1_555 A ZN 501 C ZN ZN 1_555 metalc 2.356 B CYS 216 B SG CYS 22 1_555 B ZN 501 U ZN ZN 1_555 metalc 2.361 B CYS 208 B SG CYS 14 1_555 B ZN 501 U ZN ZN 1_555 TRANSFERASE PRDM9, Methyltransferase, Structural Genomics, Structural Genomics Consortium, SGC, TRANSFERASE A GLY 274 A GLY 80 1 A PRO 275 A PRO 81 7.41 B GLY 274 B GLY 80 1 B PRO 275 B PRO 81 5.39 PRDM9_HUMAN UNP 1 195 Q9NQV7 SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN 195 415 4IJD 195 415 Q9NQV7 A 1 1 221 195 415 4IJD 195 415 Q9NQV7 B 1 1 221 2 6 2 3 2 2 6 2 3 2 anti-parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 203 A LEU 9 A CYS 205 A CYS 11 A ASN 210 A ASN 16 A PHE 212 A PHE 18 A PHE 224 A PHE 30 A VAL 225 A VAL 31 A HIS 272 A HIS 78 A PHE 273 A PHE 79 A GLN 338 A GLN 144 A THR 343 A THR 149 A LEU 330 A LEU 136 A TYR 335 A TYR 141 A LEU 354 A LEU 160 A TRP 356 A TRP 162 A ASN 320 A ASN 126 A CYS 321 A CYS 127 A LEU 246 A LEU 52 A PRO 250 A PRO 56 A LEU 258 A LEU 64 A ASN 262 A ASN 68 A ARG 279 A ARG 85 A THR 281 A THR 87 A CYS 301 A CYS 107 A ASP 306 A ASP 112 A SER 292 A SER 98 A GLY 298 A GLY 104 A HIS 388 A HIS 194 A PRO 389 A PRO 195 A ALA 396 A ALA 202 A PHE 397 A PHE 203 B LEU 203 B LEU 9 B CYS 205 B CYS 11 B ASN 210 B ASN 16 B PHE 212 B PHE 18 B PHE 224 B PHE 30 B VAL 225 B VAL 31 B HIS 272 B HIS 78 B PHE 273 B PHE 79 B GLN 338 B GLN 144 B THR 343 B THR 149 B LEU 330 B LEU 136 B TYR 335 B TYR 141 B LEU 354 B LEU 160 B TRP 356 B TRP 162 B ASN 320 B ASN 126 B CYS 321 B CYS 127 B LEU 246 B LEU 52 B PRO 250 B PRO 56 B LEU 258 B LEU 64 B ASN 262 B ASN 68 B ARG 279 B ARG 85 B THR 281 B THR 87 B TYR 302 B TYR 108 B ASP 306 B ASP 112 B SER 292 B SER 98 B THR 296 B THR 102 B HIS 388 B HIS 194 B PRO 389 B PRO 195 B ALA 396 B ALA 202 B PHE 397 B PHE 203 BINDING SITE FOR RESIDUE ZN A 501 Software 4 BINDING SITE FOR RESIDUE ZN A 502 Software 4 BINDING SITE FOR RESIDUE ZN B 501 Software 4 BINDING SITE FOR RESIDUE ZN B 502 Software 4 A CYS 205 A CYS 11 4 1_555 A CYS 208 A CYS 14 4 1_555 A CYS 216 A CYS 22 4 1_555 A HIS 219 A HIS 25 4 1_555 A CYS 390 A CYS 196 4 1_555 A CYS 393 A CYS 199 4 1_555 A HIS 406 A HIS 212 4 1_555 A HIS 411 A HIS 217 4 1_555 B CYS 205 B CYS 11 4 1_555 B CYS 208 B CYS 14 4 1_555 B CYS 216 B CYS 22 4 1_555 B HIS 219 B HIS 25 4 1_555 B CYS 390 B CYS 196 4 1_555 B CYS 393 B CYS 199 4 1_555 B HIS 406 B HIS 212 4 1_555 B HIS 411 B HIS 217 4 1_555 4 P 1 21 1