0.018270
0.000000
0.003238
0.000000
0.020499
0.000000
0.000000
0.000000
0.012902
0.00000
0.00000
0.00000
Dong, A.
Dombrovski, L.
Li, Y.
Tempel, W.
Bountra, C.
Arrowsmith, C.H.
Edwards, A.M.
Brown, P.J.
Wu, H.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.05
90.00
54.734
48.782
78.713
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Crystal structure of methyltransferase domain of human PR domain-containing protein 9
100
1
CCD
2012-11-23
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.97912
1.0
19-ID
APS
0.97912
SYNCHROTRON
APS BEAMLINE 19-ID
25344.838
Histone-lysine N-methyltransferase PRDM9
2.1.1.43
UNP residues 195-415
2
man
polymer
65.409
ZINC ION
4
syn
non-polymer
UNKNOWN ATOM OR ION
24
syn
non-polymer
18.015
water
59
nat
water
PR domain zinc finger protein 9, PR domain-containing protein 9
no
yes
SEPQDDDYLYCE(MSE)CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLG
LHFGPYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANW(MSE)RYVNCARDDEEQNLVAFQYHRQIFYRTCRV
IRPGCELLVWYGDEYGQELGIKWGSKWKKEL(MSE)AGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN
SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG
PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL
VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PRDM9, PFM6
9606
Homo sapiens
511693
Escherichia coli
BL21
plasmid
pET28-MHL
1
2.04
39.74
VAPOR DIFFUSION, HANGING DROP
5.5
23% PEG 3350, 0.2 M AMMONIUM ACETATE, 0.1 M BisTris pH5.5, vapor diffusion hanging drop, temperature 291K
291
Structural Genomics Consortium
SGC
software
repository
Initial release
Refinement description
1
0
2013-02-13
1
1
2017-11-15
Y
RCSB
Y
RCSB
2012-12-21
REL
REL
ZN
ZINC ION
UNX
UNKNOWN ATOM OR ION
HOH
water
ZN
1000
2
ZN
ZN
501
A
ZN
1001
2
ZN
ZN
502
A
UNX
1002
3
UNX
UNX
503
A
UNX
1003
3
UNX
UNX
504
A
UNX
1005
3
UNX
UNX
505
A
UNX
1006
3
UNX
UNX
506
A
UNX
1007
3
UNX
UNX
507
A
UNX
1008
3
UNX
UNX
508
A
UNX
1009
3
UNX
UNX
509
A
UNX
1010
3
UNX
UNX
510
A
UNX
1014
3
UNX
UNX
511
A
UNX
1015
3
UNX
UNX
512
A
UNX
1016
3
UNX
UNX
513
A
UNX
1017
3
UNX
UNX
514
A
UNX
1020
3
UNX
UNX
515
A
UNX
1021
3
UNX
UNX
516
A
UNX
1022
3
UNX
UNX
517
A
UNX
1023
3
UNX
UNX
518
A
ZN
1000
2
ZN
ZN
501
B
ZN
1001
2
ZN
ZN
502
B
UNX
1001
3
UNX
UNX
503
B
UNX
1004
3
UNX
UNX
504
B
UNX
1011
3
UNX
UNX
505
B
UNX
1012
3
UNX
UNX
506
B
UNX
1013
3
UNX
UNX
507
B
UNX
1018
3
UNX
UNX
508
B
UNX
1019
3
UNX
UNX
509
B
UNX
1024
3
UNX
UNX
510
B
HOH
1
4
HOH
HOH
601
A
HOH
3
4
HOH
HOH
602
A
HOH
5
4
HOH
HOH
603
A
HOH
6
4
HOH
HOH
604
A
HOH
7
4
HOH
HOH
605
A
HOH
8
4
HOH
HOH
606
A
HOH
9
4
HOH
HOH
607
A
HOH
11
4
HOH
HOH
608
A
HOH
12
4
HOH
HOH
609
A
HOH
13
4
HOH
HOH
610
A
HOH
15
4
HOH
HOH
611
A
HOH
16
4
HOH
HOH
612
A
HOH
17
4
HOH
HOH
613
A
HOH
18
4
HOH
HOH
614
A
HOH
19
4
HOH
HOH
615
A
HOH
21
4
HOH
HOH
616
A
HOH
22
4
HOH
HOH
617
A
HOH
23
4
HOH
HOH
618
A
HOH
24
4
HOH
HOH
619
A
HOH
25
4
HOH
HOH
620
A
HOH
26
4
HOH
HOH
621
A
HOH
27
4
HOH
HOH
622
A
HOH
28
4
HOH
HOH
623
A
HOH
30
4
HOH
HOH
624
A
HOH
31
4
HOH
HOH
625
A
HOH
33
4
HOH
HOH
626
A
HOH
34
4
HOH
HOH
627
A
HOH
35
4
HOH
HOH
628
A
HOH
36
4
HOH
HOH
629
A
HOH
37
4
HOH
HOH
630
A
HOH
45
4
HOH
HOH
631
A
HOH
46
4
HOH
HOH
632
A
HOH
47
4
HOH
HOH
633
A
HOH
48
4
HOH
HOH
634
A
HOH
49
4
HOH
HOH
635
A
HOH
50
4
HOH
HOH
636
A
HOH
51
4
HOH
HOH
637
A
HOH
52
4
HOH
HOH
638
A
HOH
53
4
HOH
HOH
639
A
HOH
55
4
HOH
HOH
640
A
HOH
58
4
HOH
HOH
641
A
HOH
59
4
HOH
HOH
642
A
HOH
2
4
HOH
HOH
601
B
HOH
4
4
HOH
HOH
602
B
HOH
10
4
HOH
HOH
603
B
HOH
14
4
HOH
HOH
604
B
HOH
20
4
HOH
HOH
605
B
HOH
29
4
HOH
HOH
606
B
HOH
32
4
HOH
HOH
607
B
HOH
38
4
HOH
HOH
608
B
HOH
39
4
HOH
HOH
609
B
HOH
40
4
HOH
HOH
610
B
HOH
41
4
HOH
HOH
611
B
HOH
42
4
HOH
HOH
612
B
HOH
43
4
HOH
HOH
613
B
HOH
54
4
HOH
HOH
614
B
HOH
56
4
HOH
HOH
615
B
HOH
57
4
HOH
HOH
616
B
HOH
60
4
HOH
HOH
617
B
SER
195
n
1
SER
195
A
GLU
196
n
2
GLU
196
A
PRO
197
n
3
PRO
197
A
GLN
198
n
4
GLN
198
A
ASP
199
n
5
ASP
199
A
ASP
200
n
6
ASP
200
A
ASP
201
n
7
ASP
201
A
TYR
202
n
8
TYR
202
A
LEU
203
n
9
LEU
203
A
TYR
204
n
10
TYR
204
A
CYS
205
n
11
CYS
205
A
GLU
206
n
12
GLU
206
A
MSE
207
n
13
MSE
207
A
CYS
208
n
14
CYS
208
A
GLN
209
n
15
GLN
209
A
ASN
210
n
16
ASN
210
A
PHE
211
n
17
PHE
211
A
PHE
212
n
18
PHE
212
A
ILE
213
n
19
ILE
213
A
ASP
214
n
20
ASP
214
A
SER
215
n
21
SER
215
A
CYS
216
n
22
CYS
216
A
ALA
217
n
23
ALA
217
A
ALA
218
n
24
ALA
218
A
HIS
219
n
25
HIS
219
A
GLY
220
n
26
GLY
220
A
PRO
221
n
27
PRO
221
A
PRO
222
n
28
PRO
222
A
THR
223
n
29
THR
223
A
PHE
224
n
30
PHE
224
A
VAL
225
n
31
VAL
225
A
LYS
226
n
32
LYS
226
A
ASP
227
n
33
ASP
227
A
SER
228
n
34
SER
228
A
ALA
229
n
35
ALA
229
A
VAL
230
n
36
VAL
230
A
ASP
231
n
37
ASP
231
A
LYS
232
n
38
LYS
232
A
GLY
233
n
39
GLY
233
A
HIS
234
n
40
HIS
234
A
PRO
235
n
41
PRO
235
A
ASN
236
n
42
ASN
236
A
ARG
237
n
43
ARG
237
A
SER
238
n
44
SER
238
A
ALA
239
n
45
ALA
239
A
LEU
240
n
46
LEU
240
A
SER
241
n
47
SER
241
A
LEU
242
n
48
LEU
242
A
PRO
243
n
49
PRO
243
A
PRO
244
n
50
PRO
244
A
GLY
245
n
51
GLY
245
A
LEU
246
n
52
LEU
246
A
ARG
247
n
53
ARG
247
A
ILE
248
n
54
ILE
248
A
GLY
249
n
55
GLY
249
A
PRO
250
n
56
PRO
250
A
SER
251
n
57
SER
251
A
GLY
252
n
58
GLY
252
A
ILE
253
n
59
ILE
253
A
PRO
254
n
60
PRO
254
A
GLN
255
n
61
GLN
255
A
ALA
256
n
62
ALA
256
A
GLY
257
n
63
GLY
257
A
LEU
258
n
64
LEU
258
A
GLY
259
n
65
GLY
259
A
VAL
260
n
66
VAL
260
A
TRP
261
n
67
TRP
261
A
ASN
262
n
68
ASN
262
A
GLU
263
n
69
GLU
263
A
ALA
264
n
70
ALA
264
A
SER
265
n
71
SER
265
A
ASP
266
n
72
ASP
266
A
LEU
267
n
73
LEU
267
A
PRO
268
n
74
PRO
268
A
LEU
269
n
75
LEU
269
A
GLY
270
n
76
GLY
270
A
LEU
271
n
77
LEU
271
A
HIS
272
n
78
HIS
272
A
PHE
273
n
79
PHE
273
A
GLY
274
n
80
GLY
274
A
PRO
275
n
81
PRO
275
A
TYR
276
n
82
TYR
276
A
GLU
277
n
83
GLU
277
A
GLY
278
n
84
GLY
278
A
ARG
279
n
85
ARG
279
A
ILE
280
n
86
ILE
280
A
THR
281
n
87
THR
281
A
GLU
282
n
88
GLU
282
A
ASP
283
n
89
ASP
283
A
GLU
284
n
90
GLU
284
A
GLU
285
n
91
GLU
285
A
ALA
286
n
92
ALA
286
A
ALA
287
n
93
ALA
287
A
ASN
288
n
94
ASN
288
A
ASN
289
n
95
ASN
289
A
GLY
290
n
96
GLY
290
A
TYR
291
n
97
TYR
291
A
SER
292
n
98
SER
292
A
TRP
293
n
99
TRP
293
A
LEU
294
n
100
LEU
294
A
ILE
295
n
101
ILE
295
A
THR
296
n
102
THR
296
A
LYS
297
n
103
LYS
297
A
GLY
298
n
104
GLY
298
A
ARG
299
n
105
ARG
299
A
ASN
300
n
106
ASN
300
A
CYS
301
n
107
CYS
301
A
TYR
302
n
108
TYR
302
A
GLU
303
n
109
GLU
303
A
TYR
304
n
110
TYR
304
A
VAL
305
n
111
VAL
305
A
ASP
306
n
112
ASP
306
A
GLY
307
n
113
GLY
307
A
LYS
308
n
114
LYS
308
A
ASP
309
n
115
ASP
309
A
LYS
310
n
116
LYS
310
A
SER
311
n
117
SER
311
A
TRP
312
n
118
TRP
312
A
ALA
313
n
119
ALA
313
A
ASN
314
n
120
ASN
314
A
TRP
315
n
121
TRP
315
A
MSE
316
n
122
MSE
316
A
ARG
317
n
123
ARG
317
A
TYR
318
n
124
TYR
318
A
VAL
319
n
125
VAL
319
A
ASN
320
n
126
ASN
320
A
CYS
321
n
127
CYS
321
A
ALA
322
n
128
ALA
322
A
ARG
323
n
129
ARG
323
A
ASP
324
n
130
ASP
324
A
ASP
325
n
131
ASP
325
A
GLU
326
n
132
GLU
326
A
GLU
327
n
133
GLU
327
A
GLN
328
n
134
GLN
328
A
ASN
329
n
135
ASN
329
A
LEU
330
n
136
LEU
330
A
VAL
331
n
137
VAL
331
A
ALA
332
n
138
ALA
332
A
PHE
333
n
139
PHE
333
A
GLN
334
n
140
GLN
334
A
TYR
335
n
141
TYR
335
A
HIS
336
n
142
HIS
336
A
ARG
337
n
143
ARG
337
A
GLN
338
n
144
GLN
338
A
ILE
339
n
145
ILE
339
A
PHE
340
n
146
PHE
340
A
TYR
341
n
147
TYR
341
A
ARG
342
n
148
ARG
342
A
THR
343
n
149
THR
343
A
CYS
344
n
150
CYS
344
A
ARG
345
n
151
ARG
345
A
VAL
346
n
152
VAL
346
A
ILE
347
n
153
ILE
347
A
ARG
348
n
154
ARG
348
A
PRO
349
n
155
PRO
349
A
GLY
350
n
156
GLY
350
A
CYS
351
n
157
CYS
351
A
GLU
352
n
158
GLU
352
A
LEU
353
n
159
LEU
353
A
LEU
354
n
160
LEU
354
A
VAL
355
n
161
VAL
355
A
TRP
356
n
162
TRP
356
A
TYR
357
n
163
TYR
357
A
GLY
358
n
164
GLY
358
A
ASP
359
n
165
ASP
359
A
GLU
360
n
166
GLU
360
A
TYR
361
n
167
TYR
361
A
GLY
362
n
168
GLY
362
A
GLN
363
n
169
GLN
363
A
GLU
364
n
170
GLU
364
A
LEU
365
n
171
LEU
365
A
GLY
366
n
172
GLY
366
A
ILE
367
n
173
ILE
367
A
LYS
368
n
174
LYS
368
A
TRP
369
n
175
TRP
369
A
GLY
370
n
176
GLY
370
A
SER
371
n
177
SER
371
A
LYS
372
n
178
LYS
372
A
TRP
373
n
179
TRP
373
A
LYS
374
n
180
LYS
374
A
LYS
375
n
181
LYS
375
A
GLU
376
n
182
GLU
376
A
LEU
377
n
183
LEU
377
A
MSE
378
n
184
MSE
378
A
n
185
379
A
n
186
380
A
n
187
381
A
n
188
382
A
PRO
383
n
189
PRO
383
A
LYS
384
n
190
LYS
384
A
PRO
385
n
191
PRO
385
A
GLU
386
n
192
GLU
386
A
ILE
387
n
193
ILE
387
A
HIS
388
n
194
HIS
388
A
PRO
389
n
195
PRO
389
A
CYS
390
n
196
CYS
390
A
PRO
391
n
197
PRO
391
A
SER
392
n
198
SER
392
A
CYS
393
n
199
CYS
393
A
CYS
394
n
200
CYS
394
A
LEU
395
n
201
LEU
395
A
ALA
396
n
202
ALA
396
A
PHE
397
n
203
PHE
397
A
SER
398
n
204
SER
398
A
SER
399
n
205
SER
399
A
GLN
400
n
206
GLN
400
A
LYS
401
n
207
LYS
401
A
PHE
402
n
208
PHE
402
A
LEU
403
n
209
LEU
403
A
SER
404
n
210
SER
404
A
GLN
405
n
211
GLN
405
A
HIS
406
n
212
HIS
406
A
VAL
407
n
213
VAL
407
A
GLU
408
n
214
GLU
408
A
ARG
409
n
215
ARG
409
A
ASN
410
n
216
ASN
410
A
HIS
411
n
217
HIS
411
A
SER
412
n
218
SER
412
A
SER
413
n
219
SER
413
A
n
220
414
A
n
221
415
A
SER
195
n
1
SER
195
B
GLU
196
n
2
GLU
196
B
PRO
197
n
3
PRO
197
B
GLN
198
n
4
GLN
198
B
ASP
199
n
5
ASP
199
B
ASP
200
n
6
ASP
200
B
ASP
201
n
7
ASP
201
B
TYR
202
n
8
TYR
202
B
LEU
203
n
9
LEU
203
B
TYR
204
n
10
TYR
204
B
CYS
205
n
11
CYS
205
B
GLU
206
n
12
GLU
206
B
MSE
207
n
13
MSE
207
B
CYS
208
n
14
CYS
208
B
GLN
209
n
15
GLN
209
B
ASN
210
n
16
ASN
210
B
PHE
211
n
17
PHE
211
B
PHE
212
n
18
PHE
212
B
ILE
213
n
19
ILE
213
B
ASP
214
n
20
ASP
214
B
SER
215
n
21
SER
215
B
CYS
216
n
22
CYS
216
B
ALA
217
n
23
ALA
217
B
ALA
218
n
24
ALA
218
B
HIS
219
n
25
HIS
219
B
GLY
220
n
26
GLY
220
B
PRO
221
n
27
PRO
221
B
PRO
222
n
28
PRO
222
B
THR
223
n
29
THR
223
B
PHE
224
n
30
PHE
224
B
VAL
225
n
31
VAL
225
B
LYS
226
n
32
LYS
226
B
ASP
227
n
33
ASP
227
B
SER
228
n
34
SER
228
B
ALA
229
n
35
ALA
229
B
VAL
230
n
36
VAL
230
B
ASP
231
n
37
ASP
231
B
LYS
232
n
38
LYS
232
B
GLY
233
n
39
GLY
233
B
HIS
234
n
40
HIS
234
B
PRO
235
n
41
PRO
235
B
ASN
236
n
42
ASN
236
B
ARG
237
n
43
ARG
237
B
SER
238
n
44
SER
238
B
ALA
239
n
45
ALA
239
B
LEU
240
n
46
LEU
240
B
SER
241
n
47
SER
241
B
LEU
242
n
48
LEU
242
B
PRO
243
n
49
PRO
243
B
PRO
244
n
50
PRO
244
B
GLY
245
n
51
GLY
245
B
LEU
246
n
52
LEU
246
B
ARG
247
n
53
ARG
247
B
ILE
248
n
54
ILE
248
B
GLY
249
n
55
GLY
249
B
PRO
250
n
56
PRO
250
B
SER
251
n
57
SER
251
B
GLY
252
n
58
GLY
252
B
ILE
253
n
59
ILE
253
B
PRO
254
n
60
PRO
254
B
GLN
255
n
61
GLN
255
B
ALA
256
n
62
ALA
256
B
GLY
257
n
63
GLY
257
B
LEU
258
n
64
LEU
258
B
GLY
259
n
65
GLY
259
B
VAL
260
n
66
VAL
260
B
TRP
261
n
67
TRP
261
B
ASN
262
n
68
ASN
262
B
GLU
263
n
69
GLU
263
B
ALA
264
n
70
ALA
264
B
SER
265
n
71
SER
265
B
ASP
266
n
72
ASP
266
B
LEU
267
n
73
LEU
267
B
PRO
268
n
74
PRO
268
B
LEU
269
n
75
LEU
269
B
GLY
270
n
76
GLY
270
B
LEU
271
n
77
LEU
271
B
HIS
272
n
78
HIS
272
B
PHE
273
n
79
PHE
273
B
GLY
274
n
80
GLY
274
B
PRO
275
n
81
PRO
275
B
TYR
276
n
82
TYR
276
B
GLU
277
n
83
GLU
277
B
GLY
278
n
84
GLY
278
B
ARG
279
n
85
ARG
279
B
ILE
280
n
86
ILE
280
B
THR
281
n
87
THR
281
B
GLU
282
n
88
GLU
282
B
ASP
283
n
89
ASP
283
B
GLU
284
n
90
GLU
284
B
GLU
285
n
91
GLU
285
B
ALA
286
n
92
ALA
286
B
ALA
287
n
93
ALA
287
B
ASN
288
n
94
ASN
288
B
ASN
289
n
95
ASN
289
B
GLY
290
n
96
GLY
290
B
TYR
291
n
97
TYR
291
B
SER
292
n
98
SER
292
B
TRP
293
n
99
TRP
293
B
LEU
294
n
100
LEU
294
B
ILE
295
n
101
ILE
295
B
THR
296
n
102
THR
296
B
LYS
297
n
103
LYS
297
B
GLY
298
n
104
GLY
298
B
ARG
299
n
105
ARG
299
B
ASN
300
n
106
ASN
300
B
CYS
301
n
107
CYS
301
B
TYR
302
n
108
TYR
302
B
GLU
303
n
109
GLU
303
B
TYR
304
n
110
TYR
304
B
VAL
305
n
111
VAL
305
B
ASP
306
n
112
ASP
306
B
GLY
307
n
113
GLY
307
B
LYS
308
n
114
LYS
308
B
ASP
309
n
115
ASP
309
B
LYS
310
n
116
LYS
310
B
SER
311
n
117
SER
311
B
TRP
312
n
118
TRP
312
B
ALA
313
n
119
ALA
313
B
ASN
314
n
120
ASN
314
B
TRP
315
n
121
TRP
315
B
MSE
316
n
122
MSE
316
B
ARG
317
n
123
ARG
317
B
TYR
318
n
124
TYR
318
B
VAL
319
n
125
VAL
319
B
ASN
320
n
126
ASN
320
B
CYS
321
n
127
CYS
321
B
ALA
322
n
128
ALA
322
B
ARG
323
n
129
ARG
323
B
ASP
324
n
130
ASP
324
B
ASP
325
n
131
ASP
325
B
GLU
326
n
132
GLU
326
B
GLU
327
n
133
GLU
327
B
GLN
328
n
134
GLN
328
B
ASN
329
n
135
ASN
329
B
LEU
330
n
136
LEU
330
B
VAL
331
n
137
VAL
331
B
ALA
332
n
138
ALA
332
B
PHE
333
n
139
PHE
333
B
GLN
334
n
140
GLN
334
B
TYR
335
n
141
TYR
335
B
HIS
336
n
142
HIS
336
B
ARG
337
n
143
ARG
337
B
GLN
338
n
144
GLN
338
B
ILE
339
n
145
ILE
339
B
PHE
340
n
146
PHE
340
B
TYR
341
n
147
TYR
341
B
ARG
342
n
148
ARG
342
B
THR
343
n
149
THR
343
B
CYS
344
n
150
CYS
344
B
ARG
345
n
151
ARG
345
B
VAL
346
n
152
VAL
346
B
ILE
347
n
153
ILE
347
B
ARG
348
n
154
ARG
348
B
PRO
349
n
155
PRO
349
B
GLY
350
n
156
GLY
350
B
CYS
351
n
157
CYS
351
B
GLU
352
n
158
GLU
352
B
LEU
353
n
159
LEU
353
B
LEU
354
n
160
LEU
354
B
VAL
355
n
161
VAL
355
B
TRP
356
n
162
TRP
356
B
TYR
357
n
163
TYR
357
B
GLY
358
n
164
GLY
358
B
ASP
359
n
165
ASP
359
B
GLU
360
n
166
GLU
360
B
TYR
361
n
167
TYR
361
B
GLY
362
n
168
GLY
362
B
GLN
363
n
169
GLN
363
B
GLU
364
n
170
GLU
364
B
LEU
365
n
171
LEU
365
B
GLY
366
n
172
GLY
366
B
ILE
367
n
173
ILE
367
B
LYS
368
n
174
LYS
368
B
TRP
369
n
175
TRP
369
B
GLY
370
n
176
GLY
370
B
SER
371
n
177
SER
371
B
LYS
372
n
178
LYS
372
B
TRP
373
n
179
TRP
373
B
LYS
374
n
180
LYS
374
B
LYS
375
n
181
LYS
375
B
GLU
376
n
182
GLU
376
B
LEU
377
n
183
LEU
377
B
MSE
378
n
184
MSE
378
B
n
185
379
B
n
186
380
B
ARG
381
n
187
ARG
381
B
GLU
382
n
188
GLU
382
B
PRO
383
n
189
PRO
383
B
LYS
384
n
190
LYS
384
B
PRO
385
n
191
PRO
385
B
GLU
386
n
192
GLU
386
B
ILE
387
n
193
ILE
387
B
HIS
388
n
194
HIS
388
B
PRO
389
n
195
PRO
389
B
CYS
390
n
196
CYS
390
B
PRO
391
n
197
PRO
391
B
SER
392
n
198
SER
392
B
CYS
393
n
199
CYS
393
B
CYS
394
n
200
CYS
394
B
LEU
395
n
201
LEU
395
B
ALA
396
n
202
ALA
396
B
PHE
397
n
203
PHE
397
B
SER
398
n
204
SER
398
B
SER
399
n
205
SER
399
B
GLN
400
n
206
GLN
400
B
LYS
401
n
207
LYS
401
B
PHE
402
n
208
PHE
402
B
LEU
403
n
209
LEU
403
B
SER
404
n
210
SER
404
B
GLN
405
n
211
GLN
405
B
HIS
406
n
212
HIS
406
B
VAL
407
n
213
VAL
407
B
GLU
408
n
214
GLU
408
B
ARG
409
n
215
ARG
409
B
ASN
410
n
216
ASN
410
B
HIS
411
n
217
HIS
411
B
n
218
412
B
n
219
413
B
n
220
414
B
n
221
415
B
3.8416
-2.2825
0.0946
3.2820
-0.3316
0.9260
-0.0964
-0.1070
0.1347
0.1125
0.0702
-0.1115
-0.1320
-0.0408
0.0262
0.0342
-0.0061
-0.0162
0.0332
-0.0212
0.0631
refined
10.2363
-0.4864
0.3803
X-RAY DIFFRACTION
2.4132
0.6363
-0.5177
3.5819
-0.7734
1.3689
0.0458
0.0920
0.1114
-0.1552
-0.0912
-0.1592
0.0791
0.0747
0.0454
0.1930
0.0643
0.0475
0.1962
0.0246
0.1053
refined
30.5330
-5.6112
36.1270
X-RAY DIFFRACTION
A
195
A
413
X-RAY DIFFRACTION
1
A
501
A
502
X-RAY DIFFRACTION
1
B
195
B
411
X-RAY DIFFRACTION
2
B
501
B
502
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
406
A
NE2
HIS
212
1_555
A
ZN
502
D
ZN
ZN
1_555
A
HIS
411
A
NE2
HIS
217
1_555
100.9
A
HIS
406
A
NE2
HIS
212
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
393
A
SG
CYS
199
1_555
111.2
A
HIS
411
A
NE2
HIS
217
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
393
A
SG
CYS
199
1_555
117.7
A
HIS
406
A
NE2
HIS
212
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
390
A
SG
CYS
196
1_555
98.8
A
HIS
411
A
NE2
HIS
217
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
390
A
SG
CYS
196
1_555
102.4
A
CYS
393
A
SG
CYS
199
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
390
A
SG
CYS
196
1_555
122.3
B
HIS
406
B
NE2
HIS
212
1_555
B
ZN
502
V
ZN
ZN
1_555
B
HIS
411
B
NE2
HIS
217
1_555
104.3
B
HIS
406
B
NE2
HIS
212
1_555
B
ZN
502
V
ZN
ZN
1_555
B
CYS
390
B
SG
CYS
196
1_555
109.4
B
HIS
411
B
NE2
HIS
217
1_555
B
ZN
502
V
ZN
ZN
1_555
B
CYS
390
B
SG
CYS
196
1_555
105.8
B
HIS
406
B
NE2
HIS
212
1_555
B
ZN
502
V
ZN
ZN
1_555
B
CYS
393
B
SG
CYS
199
1_555
102.4
B
HIS
411
B
NE2
HIS
217
1_555
B
ZN
502
V
ZN
ZN
1_555
B
CYS
393
B
SG
CYS
199
1_555
116.0
B
CYS
390
B
SG
CYS
196
1_555
B
ZN
502
V
ZN
ZN
1_555
B
CYS
393
B
SG
CYS
199
1_555
118.0
B
HIS
219
B
ND1
HIS
25
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
205
B
SG
CYS
11
1_555
104.9
B
HIS
219
B
ND1
HIS
25
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
216
B
SG
CYS
22
1_555
120.9
B
CYS
205
B
SG
CYS
11
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
216
B
SG
CYS
22
1_555
125.1
B
HIS
219
B
ND1
HIS
25
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
14
1_555
101.8
B
CYS
205
B
SG
CYS
11
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
14
1_555
113.9
B
CYS
216
B
SG
CYS
22
1_555
B
ZN
501
U
ZN
ZN
1_555
B
CYS
208
B
SG
CYS
14
1_555
86.1
A
HIS
219
A
ND1
HIS
25
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
205
A
SG
CYS
11
1_555
105.8
A
HIS
219
A
ND1
HIS
25
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
216
A
SG
CYS
22
1_555
111.6
A
CYS
205
A
SG
CYS
11
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
216
A
SG
CYS
22
1_555
121.8
A
HIS
219
A
ND1
HIS
25
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
14
1_555
97.7
A
CYS
205
A
SG
CYS
11
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
14
1_555
114.6
A
CYS
216
A
SG
CYS
22
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
208
A
SG
CYS
14
1_555
102.9
A
MSE
207
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
316
SELENOMETHIONINE
A
MSE
122
MET
A
MSE
378
SELENOMETHIONINE
A
MSE
184
MET
B
MSE
207
SELENOMETHIONINE
B
MSE
13
MET
B
MSE
316
SELENOMETHIONINE
B
MSE
122
MET
B
MSE
378
SELENOMETHIONINE
B
MSE
184
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
205
A
N
CYS
11
A
O
ASN
210
A
O
ASN
16
A
N
VAL
225
A
N
VAL
31
A
O
HIS
272
A
O
HIS
78
A
N
PHE
273
A
N
PHE
79
A
O
TYR
341
A
O
TYR
147
A
O
GLN
338
A
O
GLN
144
A
N
TYR
335
A
N
TYR
141
A
N
ALA
332
A
N
ALA
138
A
O
TRP
356
A
O
TRP
162
A
O
VAL
355
A
O
VAL
161
A
N
ASN
320
A
N
ASN
126
A
N
ARG
247
A
N
ARG
53
A
O
TRP
261
A
O
TRP
67
A
N
ARG
279
A
N
ARG
85
A
O
ASP
306
A
O
ASP
112
A
O
GLU
303
A
O
GLU
109
A
N
ILE
295
A
N
ILE
101
A
N
HIS
388
A
N
HIS
194
A
O
PHE
397
A
O
PHE
203
B
N
CYS
205
B
N
CYS
11
B
O
ASN
210
B
O
ASN
16
B
N
VAL
225
B
N
VAL
31
B
O
HIS
272
B
O
HIS
78
B
N
PHE
273
B
N
PHE
79
B
O
TYR
341
B
O
TYR
147
B
O
GLN
338
B
O
GLN
144
B
N
TYR
335
B
N
TYR
141
B
N
ALA
332
B
N
ALA
138
B
O
TRP
356
B
O
TRP
162
B
O
VAL
355
B
O
VAL
161
B
N
ASN
320
B
N
ASN
126
B
N
ARG
247
B
N
ARG
53
B
O
TRP
261
B
O
TRP
67
B
N
THR
281
B
N
THR
87
B
O
TYR
304
B
O
TYR
110
B
O
GLU
303
B
O
GLU
109
B
N
ILE
295
B
N
ILE
101
B
N
HIS
388
B
N
HIS
194
B
O
PHE
397
B
O
PHE
203
1
A
CG
ASP
214
A
CG
ASP
20
1
Y
1
A
OD1
ASP
214
A
OD1
ASP
20
1
Y
1
A
OD2
ASP
214
A
OD2
ASP
20
1
Y
1
A
CG
LYS
226
A
CG
LYS
32
1
Y
1
A
CD
LYS
226
A
CD
LYS
32
1
Y
1
A
CE
LYS
226
A
CE
LYS
32
1
Y
1
A
NZ
LYS
226
A
NZ
LYS
32
1
Y
1
A
CG
ASP
231
A
CG
ASP
37
1
Y
1
A
OD1
ASP
231
A
OD1
ASP
37
1
Y
1
A
OD2
ASP
231
A
OD2
ASP
37
1
Y
1
A
CG
LYS
232
A
CG
LYS
38
1
Y
1
A
CD
LYS
232
A
CD
LYS
38
1
Y
1
A
CE
LYS
232
A
CE
LYS
38
1
Y
1
A
NZ
LYS
232
A
NZ
LYS
38
1
Y
1
A
CG
HIS
234
A
CG
HIS
40
1
Y
1
A
ND1
HIS
234
A
ND1
HIS
40
1
Y
1
A
CD2
HIS
234
A
CD2
HIS
40
1
Y
1
A
CE1
HIS
234
A
CE1
HIS
40
1
Y
1
A
NE2
HIS
234
A
NE2
HIS
40
1
Y
1
A
CG
ARG
279
A
CG
ARG
85
1
Y
1
A
CD
ARG
279
A
CD
ARG
85
1
Y
1
A
NE
ARG
279
A
NE
ARG
85
1
Y
1
A
CZ
ARG
279
A
CZ
ARG
85
1
Y
1
A
NH1
ARG
279
A
NH1
ARG
85
1
Y
1
A
NH2
ARG
279
A
NH2
ARG
85
1
Y
1
A
CG
GLU
284
A
CG
GLU
90
1
Y
1
A
CD
GLU
284
A
CD
GLU
90
1
Y
1
A
OE1
GLU
284
A
OE1
GLU
90
1
Y
1
A
OE2
GLU
284
A
OE2
GLU
90
1
Y
1
A
CG
GLU
285
A
CG
GLU
91
1
Y
1
A
CD
GLU
285
A
CD
GLU
91
1
Y
1
A
OE1
GLU
285
A
OE1
GLU
91
1
Y
1
A
OE2
GLU
285
A
OE2
GLU
91
1
Y
1
A
CG
ASN
288
A
CG
ASN
94
1
Y
1
A
OD1
ASN
288
A
OD1
ASN
94
1
Y
1
A
ND2
ASN
288
A
ND2
ASN
94
1
Y
1
A
CG
GLU
303
A
CG
GLU
109
1
Y
1
A
CD
GLU
303
A
CD
GLU
109
1
Y
1
A
OE1
GLU
303
A
OE1
GLU
109
1
Y
1
A
OE2
GLU
303
A
OE2
GLU
109
1
Y
1
A
CG
LYS
308
A
CG
LYS
114
1
Y
1
A
CD
LYS
308
A
CD
LYS
114
1
Y
1
A
CE
LYS
308
A
CE
LYS
114
1
Y
1
A
NZ
LYS
308
A
NZ
LYS
114
1
Y
1
A
OG
SER
311
A
OG
SER
117
1
Y
1
A
CD
ARG
348
A
CD
ARG
154
1
Y
1
A
NE
ARG
348
A
NE
ARG
154
1
Y
1
A
CZ
ARG
348
A
CZ
ARG
154
1
Y
1
A
NH1
ARG
348
A
NH1
ARG
154
1
Y
1
A
NH2
ARG
348
A
NH2
ARG
154
1
Y
1
A
CG
GLN
363
A
CG
GLN
169
1
Y
1
A
CD
GLN
363
A
CD
GLN
169
1
Y
1
A
OE1
GLN
363
A
OE1
GLN
169
1
Y
1
A
NE2
GLN
363
A
NE2
GLN
169
1
Y
1
A
CD
GLU
364
A
CD
GLU
170
1
Y
1
A
OE1
GLU
364
A
OE1
GLU
170
1
Y
1
A
OE2
GLU
364
A
OE2
GLU
170
1
Y
1
A
CG1
ILE
367
A
CG1
ILE
173
1
Y
1
A
CG2
ILE
367
A
CG2
ILE
173
1
Y
1
A
CD1
ILE
367
A
CD1
ILE
173
1
Y
1
A
CG
LYS
372
A
CG
LYS
178
1
Y
1
A
CD
LYS
372
A
CD
LYS
178
1
Y
1
A
CE
LYS
372
A
CE
LYS
178
1
Y
1
A
NZ
LYS
372
A
NZ
LYS
178
1
Y
1
A
CG
GLU
376
A
CG
GLU
182
1
Y
1
A
CD
GLU
376
A
CD
GLU
182
1
Y
1
A
OE1
GLU
376
A
OE1
GLU
182
1
Y
1
A
OE2
GLU
376
A
OE2
GLU
182
1
Y
1
A
CG
LYS
384
A
CG
LYS
190
1
Y
1
A
CD
LYS
384
A
CD
LYS
190
1
Y
1
A
CE
LYS
384
A
CE
LYS
190
1
Y
1
A
NZ
LYS
384
A
NZ
LYS
190
1
Y
1
A
CG1
ILE
387
A
CG1
ILE
193
1
Y
1
A
CD1
ILE
387
A
CD1
ILE
193
1
Y
1
A
CD
GLN
400
A
CD
GLN
206
1
Y
1
A
OE1
GLN
400
A
OE1
GLN
206
1
Y
1
A
NE2
GLN
400
A
NE2
GLN
206
1
Y
1
A
CD
LYS
401
A
CD
LYS
207
1
Y
1
A
CE
LYS
401
A
CE
LYS
207
1
Y
1
A
NZ
LYS
401
A
NZ
LYS
207
1
Y
1
A
CD
ARG
409
A
CD
ARG
215
1
Y
1
A
NE
ARG
409
A
NE
ARG
215
1
Y
1
A
CZ
ARG
409
A
CZ
ARG
215
1
Y
1
A
NH1
ARG
409
A
NH1
ARG
215
1
Y
1
A
NH2
ARG
409
A
NH2
ARG
215
1
Y
1
B
OG
SER
195
B
OG
SER
1
1
Y
1
B
CG
ASP
214
B
CG
ASP
20
1
Y
1
B
OD1
ASP
214
B
OD1
ASP
20
1
Y
1
B
OD2
ASP
214
B
OD2
ASP
20
1
Y
1
B
CG
LYS
226
B
CG
LYS
32
1
Y
1
B
CD
LYS
226
B
CD
LYS
32
1
Y
1
B
CE
LYS
226
B
CE
LYS
32
1
Y
1
B
NZ
LYS
226
B
NZ
LYS
32
1
Y
1
B
CG
ASP
231
B
CG
ASP
37
1
Y
1
B
OD1
ASP
231
B
OD1
ASP
37
1
Y
1
B
OD2
ASP
231
B
OD2
ASP
37
1
Y
1
B
CG
LYS
232
B
CG
LYS
38
1
Y
1
B
CD
LYS
232
B
CD
LYS
38
1
Y
1
B
CE
LYS
232
B
CE
LYS
38
1
Y
1
B
NZ
LYS
232
B
NZ
LYS
38
1
Y
1
B
CG1
ILE
253
B
CG1
ILE
59
1
Y
1
B
CD1
ILE
253
B
CD1
ILE
59
1
Y
1
B
CG
GLN
255
B
CG
GLN
61
1
Y
1
B
CD
GLN
255
B
CD
GLN
61
1
Y
1
B
OE1
GLN
255
B
OE1
GLN
61
1
Y
1
B
NE2
GLN
255
B
NE2
GLN
61
1
Y
1
B
CD
GLU
263
B
CD
GLU
69
1
Y
1
B
OE1
GLU
263
B
OE1
GLU
69
1
Y
1
B
OE2
GLU
263
B
OE2
GLU
69
1
Y
1
B
CG1
ILE
280
B
CG1
ILE
86
1
Y
1
B
CG2
ILE
280
B
CG2
ILE
86
1
Y
1
B
CD1
ILE
280
B
CD1
ILE
86
1
Y
1
B
CG
GLU
284
B
CG
GLU
90
1
Y
1
B
CD
GLU
284
B
CD
GLU
90
1
Y
1
B
OE1
GLU
284
B
OE1
GLU
90
1
Y
1
B
OE2
GLU
284
B
OE2
GLU
90
1
Y
1
B
CG
GLU
285
B
CG
GLU
91
1
Y
1
B
CD
GLU
285
B
CD
GLU
91
1
Y
1
B
OE1
GLU
285
B
OE1
GLU
91
1
Y
1
B
OE2
GLU
285
B
OE2
GLU
91
1
Y
1
B
CE
LYS
297
B
CE
LYS
103
1
Y
1
B
NZ
LYS
297
B
NZ
LYS
103
1
Y
1
B
CG
LYS
308
B
CG
LYS
114
1
Y
1
B
CD
LYS
308
B
CD
LYS
114
1
Y
1
B
CE
LYS
308
B
CE
LYS
114
1
Y
1
B
NZ
LYS
308
B
NZ
LYS
114
1
Y
1
B
CE
LYS
310
B
CE
LYS
116
1
Y
1
B
NZ
LYS
310
B
NZ
LYS
116
1
Y
1
B
CG
ARG
348
B
CG
ARG
154
1
Y
1
B
CD
ARG
348
B
CD
ARG
154
1
Y
1
B
NE
ARG
348
B
NE
ARG
154
1
Y
1
B
CZ
ARG
348
B
CZ
ARG
154
1
Y
1
B
NH1
ARG
348
B
NH1
ARG
154
1
Y
1
B
NH2
ARG
348
B
NH2
ARG
154
1
Y
1
B
CG
GLN
363
B
CG
GLN
169
1
Y
1
B
CD
GLN
363
B
CD
GLN
169
1
Y
1
B
OE1
GLN
363
B
OE1
GLN
169
1
Y
1
B
NE2
GLN
363
B
NE2
GLN
169
1
Y
1
B
CD
GLU
364
B
CD
GLU
170
1
Y
1
B
OE1
GLU
364
B
OE1
GLU
170
1
Y
1
B
OE2
GLU
364
B
OE2
GLU
170
1
Y
1
B
CG1
ILE
367
B
CG1
ILE
173
1
Y
1
B
CG2
ILE
367
B
CG2
ILE
173
1
Y
1
B
CD1
ILE
367
B
CD1
ILE
173
1
Y
1
B
CG
LYS
372
B
CG
LYS
178
1
Y
1
B
CD
LYS
372
B
CD
LYS
178
1
Y
1
B
CE
LYS
372
B
CE
LYS
178
1
Y
1
B
NZ
LYS
372
B
NZ
LYS
178
1
Y
1
B
CG
GLU
376
B
CG
GLU
182
1
Y
1
B
CD
GLU
376
B
CD
GLU
182
1
Y
1
B
OE1
GLU
376
B
OE1
GLU
182
1
Y
1
B
OE2
GLU
376
B
OE2
GLU
182
1
Y
1
B
CG
LEU
377
B
CG
LEU
183
1
Y
1
B
CD1
LEU
377
B
CD1
LEU
183
1
Y
1
B
CD2
LEU
377
B
CD2
LEU
183
1
Y
1
B
CG
ARG
381
B
CG
ARG
187
1
Y
1
B
CD
ARG
381
B
CD
ARG
187
1
Y
1
B
NE
ARG
381
B
NE
ARG
187
1
Y
1
B
CZ
ARG
381
B
CZ
ARG
187
1
Y
1
B
NH1
ARG
381
B
NH1
ARG
187
1
Y
1
B
NH2
ARG
381
B
NH2
ARG
187
1
Y
1
B
CG
LYS
384
B
CG
LYS
190
1
Y
1
B
CD
LYS
384
B
CD
LYS
190
1
Y
1
B
CE
LYS
384
B
CE
LYS
190
1
Y
1
B
NZ
LYS
384
B
NZ
LYS
190
1
Y
1
B
CG
GLU
386
B
CG
GLU
192
1
Y
1
B
CD
GLU
386
B
CD
GLU
192
1
Y
1
B
OE1
GLU
386
B
OE1
GLU
192
1
Y
1
B
OE2
GLU
386
B
OE2
GLU
192
1
Y
1
B
CG
LYS
401
B
CG
LYS
207
1
Y
1
B
CD
LYS
401
B
CD
LYS
207
1
Y
1
B
CE
LYS
401
B
CE
LYS
207
1
Y
1
B
NZ
LYS
401
B
NZ
LYS
207
1
Y
1
B
CG
GLU
408
B
CG
GLU
214
1
Y
1
B
CD
GLU
408
B
CD
GLU
214
1
Y
1
B
OE1
GLU
408
B
OE1
GLU
214
1
Y
1
B
OE2
GLU
408
B
OE2
GLU
214
1
Y
1
B
CG
ARG
409
B
CG
ARG
215
1
Y
1
B
CD
ARG
409
B
CD
ARG
215
1
Y
1
B
NE
ARG
409
B
NE
ARG
215
1
Y
1
B
CZ
ARG
409
B
CZ
ARG
215
1
Y
1
B
NH1
ARG
409
B
NH1
ARG
215
1
Y
1
B
NH2
ARG
409
B
NH2
ARG
215
1
Y
1
A
ALA
379
A
ALA
185
1
Y
1
A
GLY
380
A
GLY
186
1
Y
1
A
ARG
381
A
ARG
187
1
Y
1
A
GLU
382
A
GLU
188
1
Y
1
A
GLN
414
A
GLN
220
1
Y
1
A
ASN
415
A
ASN
221
1
Y
1
B
ALA
379
B
ALA
185
1
Y
1
B
GLY
380
B
GLY
186
1
Y
1
B
SER
412
B
SER
218
1
Y
1
B
SER
413
B
SER
219
1
Y
1
B
GLN
414
B
GLN
220
1
Y
1
B
ASN
415
B
ASN
221
1
Y
1
A
A
NH1
O
ARG
HOH
345
618
2.18
1
A
A
CE2
CD2
TRP
TRP
356
356
0.073
0.012
1.409
1.482
N
1
B
B
CG
CD2
HIS
HIS
411
411
0.055
0.009
1.354
1.409
N
1
A
ASP
214
81.76
-66.14
1
A
GLN
255
79.93
-3.03
1
A
GLU
263
-123.20
-54.62
1
A
ASN
288
B
35.81
41.83
1
A
HIS
411
-139.50
-41.84
1
A
SER
412
-165.07
118.77
1
B
GLU
196
-171.76
124.02
1
B
ASP
214
73.33
-65.17
1
B
GLU
263
-132.92
-60.29
1
B
ASN
288
56.21
13.22
1
B
ASN
300
45.50
28.82
1
B
ASN
410
-158.14
29.39
119.000
50.9656
25.810
0.4500
0.0000
-0.3500
0.5600
0.0000
-1.1300
0.9560
0.9190
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2640
0.1964
0.1991
0.1991
2.1500
36.1900
911
21794
21794
4.2000
99.9
0.2603
0.1916
1.000
0.400
0.8295
13.1230
0.1640
0.2900
0.2333
RANDOM
1
THROUGHOUT
0.000
SAD
0.2900
0.2330
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.1500
36.1900
59
3362
28
0
3275
0.011
0.020
3413
0.001
0.020
2913
1.195
1.939
4650
0.719
3.004
6668
6.840
5.000
431
32.447
23.734
158
13.188
15.000
435
13.537
15.000
17
0.070
0.200
467
0.007
0.021
4000
0.001
0.020
839
0.3370
0.2310
2.2080
40
951
991
20
60.5400
39.1
2.15
50.000
4IJD
21804
21804
0
0
0.093
2.565
1
31.1
6.300
99.900
0.804
2.15
2.200
1089
1.015
1
5.200
99.700
0.769
2.200
2.240
1050
0.991
1
5.700
100.000
0.782
2.240
2.280
1103
1.059
1
6.000
99.900
0.614
2.280
2.330
1076
1.029
1
6.200
100.000
0.515
2.330
2.380
1081
1.070
1
6.300
100.000
0.421
2.380
2.430
1093
1.139
1
6.400
100.000
0.400
2.430
2.490
1071
1.122
1
6.400
100.000
0.346
2.490
2.560
1080
1.173
1
6.400
100.000
0.282
2.560
2.640
1077
1.217
1
6.500
100.000
0.229
2.640
2.720
1107
1.327
1
6.500
100.000
0.187
2.720
2.820
1075
1.440
1
6.500
100.000
0.155
2.820
2.930
1074
1.559
1
6.600
100.000
0.116
2.930
3.060
1083
1.852
1
6.600
100.000
0.099
3.060
3.230
1099
2.291
1
6.500
100.000
0.081
3.230
3.430
1110
2.889
1
6.500
100.000
0.073
3.430
3.690
1084
3.628
1
6.400
100.000
0.065
3.690
4.060
1095
4.313
1
6.300
100.000
0.059
4.060
4.650
1099
4.899
1
6.200
99.900
0.063
4.650
5.860
1110
6.093
1
6.100
99.900
0.066
5.860
50.000
1148
10.731
1
6.100
99.000
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
SBC-Collect
data scaling
HKL-3000
phasing
SOLVE
model building
Coot
0.6.2
Histone-lysine N-methyltransferase PRDM9 (E.C.2.1.1.43)
Crystal structure of methyltransferase domain of human PR domain-containing protein 9
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLN
198
A
GLN
4
HELX_P
A
TYR
202
A
TYR
8
5
1
5
A
ASN
236
A
ASN
42
HELX_P
A
SER
241
A
SER
47
1
2
6
A
ASP
283
A
ASP
89
HELX_P
A
ALA
287
A
ALA
93
5
3
5
A
ASN
314
A
ASN
120
HELX_P
A
VAL
319
A
VAL
125
5
4
6
A
TYR
361
A
TYR
167
HELX_P
A
LYS
368
A
LYS
174
1
5
8
A
LYS
372
A
LYS
178
HELX_P
A
MSE
378
A
MSE
184
1
6
7
A
SER
399
A
SER
205
HELX_P
A
HIS
411
A
HIS
217
1
7
13
B
GLN
198
B
GLN
4
HELX_P
B
TYR
202
B
TYR
8
5
8
5
B
ASN
236
B
ASN
42
HELX_P
B
LEU
242
B
LEU
48
1
9
7
B
ASP
283
B
ASP
89
HELX_P
B
ALA
287
B
ALA
93
5
10
5
B
ASP
309
B
ASP
115
HELX_P
B
ALA
313
B
ALA
119
5
11
5
B
ASN
314
B
ASN
120
HELX_P
B
VAL
319
B
VAL
125
5
12
6
B
TYR
361
B
TYR
167
HELX_P
B
LYS
368
B
LYS
174
1
13
8
B
LYS
372
B
LYS
178
HELX_P
B
MSE
378
B
MSE
184
1
14
7
B
SER
399
B
SER
205
HELX_P
B
HIS
411
B
HIS
217
1
15
13
disulf
2.070
A
CYS
351
A
SG
CYS
157
1_555
A
CYS
394
A
SG
CYS
200
1_555
disulf
2.053
B
CYS
351
B
SG
CYS
157
1_555
B
CYS
394
B
SG
CYS
200
1_555
covale
1.329
A
GLU
206
A
C
GLU
12
1_555
A
MSE
207
A
N
MSE
13
1_555
covale
1.340
A
MSE
207
A
C
MSE
13
1_555
A
CYS
208
A
N
CYS
14
1_555
covale
1.326
A
TRP
315
A
C
TRP
121
1_555
A
MSE
316
A
N
MSE
122
1_555
covale
1.336
A
MSE
316
A
C
MSE
122
1_555
A
ARG
317
A
N
ARG
123
1_555
covale
1.333
A
LEU
377
A
C
LEU
183
1_555
A
MSE
378
A
N
MSE
184
1_555
covale
1.329
B
GLU
206
B
C
GLU
12
1_555
B
MSE
207
B
N
MSE
13
1_555
covale
1.331
B
MSE
207
B
C
MSE
13
1_555
B
CYS
208
B
N
CYS
14
1_555
covale
1.325
B
TRP
315
B
C
TRP
121
1_555
B
MSE
316
B
N
MSE
122
1_555
covale
1.329
B
MSE
316
B
C
MSE
122
1_555
B
ARG
317
B
N
ARG
123
1_555
covale
1.340
B
LEU
377
B
C
LEU
183
1_555
B
MSE
378
B
N
MSE
184
1_555
metalc
2.118
A
HIS
406
A
NE2
HIS
212
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.118
A
HIS
411
A
NE2
HIS
217
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.122
B
HIS
406
B
NE2
HIS
212
1_555
B
ZN
502
V
ZN
ZN
1_555
metalc
2.156
B
HIS
219
B
ND1
HIS
25
1_555
B
ZN
501
U
ZN
ZN
1_555
metalc
2.158
A
HIS
219
A
ND1
HIS
25
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.168
B
HIS
411
B
NE2
HIS
217
1_555
B
ZN
502
V
ZN
ZN
1_555
metalc
2.257
A
CYS
205
A
SG
CYS
11
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.276
A
CYS
393
A
SG
CYS
199
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.293
A
CYS
390
A
SG
CYS
196
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.298
B
CYS
205
B
SG
CYS
11
1_555
B
ZN
501
U
ZN
ZN
1_555
metalc
2.303
A
CYS
216
A
SG
CYS
22
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.329
B
CYS
390
B
SG
CYS
196
1_555
B
ZN
502
V
ZN
ZN
1_555
metalc
2.330
B
CYS
393
B
SG
CYS
199
1_555
B
ZN
502
V
ZN
ZN
1_555
metalc
2.353
A
CYS
208
A
SG
CYS
14
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.356
B
CYS
216
B
SG
CYS
22
1_555
B
ZN
501
U
ZN
ZN
1_555
metalc
2.361
B
CYS
208
B
SG
CYS
14
1_555
B
ZN
501
U
ZN
ZN
1_555
TRANSFERASE
PRDM9, Methyltransferase, Structural Genomics, Structural Genomics Consortium, SGC, TRANSFERASE
A
GLY
274
A
GLY
80
1
A
PRO
275
A
PRO
81
7.41
B
GLY
274
B
GLY
80
1
B
PRO
275
B
PRO
81
5.39
PRDM9_HUMAN
UNP
1
195
Q9NQV7
SEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFG
PYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL
VWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQN
195
415
4IJD
195
415
Q9NQV7
A
1
1
221
195
415
4IJD
195
415
Q9NQV7
B
1
1
221
2
6
2
3
2
2
6
2
3
2
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
203
A
LEU
9
A
CYS
205
A
CYS
11
A
ASN
210
A
ASN
16
A
PHE
212
A
PHE
18
A
PHE
224
A
PHE
30
A
VAL
225
A
VAL
31
A
HIS
272
A
HIS
78
A
PHE
273
A
PHE
79
A
GLN
338
A
GLN
144
A
THR
343
A
THR
149
A
LEU
330
A
LEU
136
A
TYR
335
A
TYR
141
A
LEU
354
A
LEU
160
A
TRP
356
A
TRP
162
A
ASN
320
A
ASN
126
A
CYS
321
A
CYS
127
A
LEU
246
A
LEU
52
A
PRO
250
A
PRO
56
A
LEU
258
A
LEU
64
A
ASN
262
A
ASN
68
A
ARG
279
A
ARG
85
A
THR
281
A
THR
87
A
CYS
301
A
CYS
107
A
ASP
306
A
ASP
112
A
SER
292
A
SER
98
A
GLY
298
A
GLY
104
A
HIS
388
A
HIS
194
A
PRO
389
A
PRO
195
A
ALA
396
A
ALA
202
A
PHE
397
A
PHE
203
B
LEU
203
B
LEU
9
B
CYS
205
B
CYS
11
B
ASN
210
B
ASN
16
B
PHE
212
B
PHE
18
B
PHE
224
B
PHE
30
B
VAL
225
B
VAL
31
B
HIS
272
B
HIS
78
B
PHE
273
B
PHE
79
B
GLN
338
B
GLN
144
B
THR
343
B
THR
149
B
LEU
330
B
LEU
136
B
TYR
335
B
TYR
141
B
LEU
354
B
LEU
160
B
TRP
356
B
TRP
162
B
ASN
320
B
ASN
126
B
CYS
321
B
CYS
127
B
LEU
246
B
LEU
52
B
PRO
250
B
PRO
56
B
LEU
258
B
LEU
64
B
ASN
262
B
ASN
68
B
ARG
279
B
ARG
85
B
THR
281
B
THR
87
B
TYR
302
B
TYR
108
B
ASP
306
B
ASP
112
B
SER
292
B
SER
98
B
THR
296
B
THR
102
B
HIS
388
B
HIS
194
B
PRO
389
B
PRO
195
B
ALA
396
B
ALA
202
B
PHE
397
B
PHE
203
BINDING SITE FOR RESIDUE ZN A 501
Software
4
BINDING SITE FOR RESIDUE ZN A 502
Software
4
BINDING SITE FOR RESIDUE ZN B 501
Software
4
BINDING SITE FOR RESIDUE ZN B 502
Software
4
A
CYS
205
A
CYS
11
4
1_555
A
CYS
208
A
CYS
14
4
1_555
A
CYS
216
A
CYS
22
4
1_555
A
HIS
219
A
HIS
25
4
1_555
A
CYS
390
A
CYS
196
4
1_555
A
CYS
393
A
CYS
199
4
1_555
A
HIS
406
A
HIS
212
4
1_555
A
HIS
411
A
HIS
217
4
1_555
B
CYS
205
B
CYS
11
4
1_555
B
CYS
208
B
CYS
14
4
1_555
B
CYS
216
B
CYS
22
4
1_555
B
HIS
219
B
HIS
25
4
1_555
B
CYS
390
B
CYS
196
4
1_555
B
CYS
393
B
CYS
199
4
1_555
B
HIS
406
B
HIS
212
4
1_555
B
HIS
411
B
HIS
217
4
1_555
4
P 1 21 1