0.024925
0.000000
0.000000
0.000000
0.016026
0.000000
0.000000
0.000000
0.015138
0.000000
0.000000
0.000000
Xu, J.
Xu, T.
Liu, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
40.120
62.400
66.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
to be published
0353
Structure of Sorting Nexin 11 (SNX11) Reveals a Novel Extended PX Domain (PXe Domain) Critical for the Inhibition of Sorting Nexin 10 (SNX10) Induced Vacuolation
1
CCD
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9791
1.0
BL17U
SSRF
0.9791
SYNCHROTRON
SSRF BEAMLINE BL17U
20203.820
Sorting nexin-11
UNP residues 7-170
1
man
polymer
35.453
CHLORIDE ION
3
syn
non-polymer
22.990
SODIUM ION
4
syn
non-polymer
18.015
water
158
nat
water
no
yes
MSENQEQEEVITVRVQDPRVQNEGSWNSYVDY(MLY)IFLHTNS(MLY)AFTA(MLY)TSCVRRRYREFVWLR(MLY)QL
QRNAGLVPVPELPGKSTFFGTSDEFIE(MLY)RRQGLQHFLE(MLY)VLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGR
STMTVSDAILRYAMSNCGWAQEERQSSSLEHHHHHH
MSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKS
TFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEER
QSSSLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SNX11
9606
Homo sapiens
562
Escherichia coli
plasmid
1
2.05
39.89
0.280
VAPOR DIFFUSION
7.5
0.1M HEPES pH 7.5, 20% PEG 8000, vapor diffusion, temperature 293K
293
repository
Initial release
1
0
2013-04-24
RCSB
Y
PDBJ
2012-12-26
REL
REL
CL
CHLORIDE ION
NA
SODIUM ION
HOH
water
CL
1
2
CL
CL
201
A
CL
2
2
CL
CL
202
A
CL
3
2
CL
CL
203
A
NA
4
3
NA
NA
204
A
NA
5
3
NA
NA
205
A
NA
6
3
NA
NA
206
A
NA
7
3
NA
NA
207
A
HOH
1
4
HOH
HOH
301
A
HOH
2
4
HOH
HOH
302
A
HOH
5
4
HOH
HOH
303
A
HOH
6
4
HOH
HOH
304
A
HOH
7
4
HOH
HOH
305
A
HOH
8
4
HOH
HOH
306
A
HOH
9
4
HOH
HOH
307
A
HOH
10
4
HOH
HOH
308
A
HOH
11
4
HOH
HOH
309
A
HOH
12
4
HOH
HOH
310
A
HOH
13
4
HOH
HOH
311
A
HOH
14
4
HOH
HOH
312
A
HOH
15
4
HOH
HOH
313
A
HOH
16
4
HOH
HOH
314
A
HOH
17
4
HOH
HOH
315
A
HOH
18
4
HOH
HOH
316
A
HOH
19
4
HOH
HOH
317
A
HOH
20
4
HOH
HOH
318
A
HOH
21
4
HOH
HOH
319
A
HOH
22
4
HOH
HOH
320
A
HOH
23
4
HOH
HOH
321
A
HOH
24
4
HOH
HOH
322
A
HOH
25
4
HOH
HOH
323
A
HOH
27
4
HOH
HOH
324
A
HOH
28
4
HOH
HOH
325
A
HOH
29
4
HOH
HOH
326
A
HOH
30
4
HOH
HOH
327
A
HOH
31
4
HOH
HOH
328
A
HOH
32
4
HOH
HOH
329
A
HOH
33
4
HOH
HOH
330
A
HOH
34
4
HOH
HOH
331
A
HOH
35
4
HOH
HOH
332
A
HOH
37
4
HOH
HOH
333
A
HOH
38
4
HOH
HOH
334
A
HOH
39
4
HOH
HOH
335
A
HOH
40
4
HOH
HOH
336
A
HOH
41
4
HOH
HOH
337
A
HOH
42
4
HOH
HOH
338
A
HOH
43
4
HOH
HOH
339
A
HOH
44
4
HOH
HOH
340
A
HOH
45
4
HOH
HOH
341
A
HOH
46
4
HOH
HOH
342
A
HOH
47
4
HOH
HOH
343
A
HOH
49
4
HOH
HOH
344
A
HOH
50
4
HOH
HOH
345
A
HOH
51
4
HOH
HOH
346
A
HOH
52
4
HOH
HOH
347
A
HOH
53
4
HOH
HOH
348
A
HOH
54
4
HOH
HOH
349
A
HOH
55
4
HOH
HOH
350
A
HOH
56
4
HOH
HOH
351
A
HOH
58
4
HOH
HOH
352
A
HOH
59
4
HOH
HOH
353
A
HOH
60
4
HOH
HOH
354
A
HOH
62
4
HOH
HOH
355
A
HOH
64
4
HOH
HOH
356
A
HOH
65
4
HOH
HOH
357
A
HOH
66
4
HOH
HOH
358
A
HOH
67
4
HOH
HOH
359
A
HOH
68
4
HOH
HOH
360
A
HOH
69
4
HOH
HOH
361
A
HOH
70
4
HOH
HOH
362
A
HOH
71
4
HOH
HOH
363
A
HOH
72
4
HOH
HOH
364
A
HOH
73
4
HOH
HOH
365
A
HOH
74
4
HOH
HOH
366
A
HOH
75
4
HOH
HOH
367
A
HOH
76
4
HOH
HOH
368
A
HOH
77
4
HOH
HOH
369
A
HOH
78
4
HOH
HOH
370
A
HOH
80
4
HOH
HOH
371
A
HOH
81
4
HOH
HOH
372
A
HOH
82
4
HOH
HOH
373
A
HOH
83
4
HOH
HOH
374
A
HOH
84
4
HOH
HOH
375
A
HOH
85
4
HOH
HOH
376
A
HOH
86
4
HOH
HOH
377
A
HOH
87
4
HOH
HOH
378
A
HOH
89
4
HOH
HOH
379
A
HOH
90
4
HOH
HOH
380
A
HOH
91
4
HOH
HOH
381
A
HOH
92
4
HOH
HOH
382
A
HOH
93
4
HOH
HOH
383
A
HOH
94
4
HOH
HOH
384
A
HOH
95
4
HOH
HOH
385
A
HOH
96
4
HOH
HOH
386
A
HOH
97
4
HOH
HOH
387
A
HOH
98
4
HOH
HOH
388
A
HOH
99
4
HOH
HOH
389
A
HOH
100
4
HOH
HOH
390
A
HOH
101
4
HOH
HOH
391
A
HOH
102
4
HOH
HOH
392
A
HOH
103
4
HOH
HOH
393
A
HOH
104
4
HOH
HOH
394
A
HOH
105
4
HOH
HOH
395
A
HOH
106
4
HOH
HOH
396
A
HOH
107
4
HOH
HOH
397
A
HOH
108
4
HOH
HOH
398
A
HOH
109
4
HOH
HOH
399
A
HOH
110
4
HOH
HOH
400
A
HOH
111
4
HOH
HOH
401
A
HOH
113
4
HOH
HOH
402
A
HOH
115
4
HOH
HOH
403
A
HOH
116
4
HOH
HOH
404
A
HOH
118
4
HOH
HOH
405
A
HOH
119
4
HOH
HOH
406
A
HOH
120
4
HOH
HOH
407
A
HOH
122
4
HOH
HOH
408
A
HOH
124
4
HOH
HOH
409
A
HOH
125
4
HOH
HOH
410
A
HOH
126
4
HOH
HOH
411
A
HOH
128
4
HOH
HOH
412
A
HOH
129
4
HOH
HOH
413
A
HOH
130
4
HOH
HOH
414
A
HOH
131
4
HOH
HOH
415
A
HOH
132
4
HOH
HOH
416
A
HOH
134
4
HOH
HOH
417
A
HOH
135
4
HOH
HOH
418
A
HOH
137
4
HOH
HOH
419
A
HOH
140
4
HOH
HOH
420
A
HOH
141
4
HOH
HOH
421
A
HOH
143
4
HOH
HOH
422
A
HOH
144
4
HOH
HOH
423
A
HOH
145
4
HOH
HOH
424
A
HOH
146
4
HOH
HOH
425
A
HOH
147
4
HOH
HOH
426
A
HOH
148
4
HOH
HOH
427
A
HOH
151
4
HOH
HOH
428
A
HOH
152
4
HOH
HOH
429
A
HOH
153
4
HOH
HOH
430
A
HOH
154
4
HOH
HOH
431
A
HOH
155
4
HOH
HOH
432
A
HOH
156
4
HOH
HOH
433
A
HOH
157
4
HOH
HOH
434
A
HOH
158
4
HOH
HOH
435
A
HOH
159
4
HOH
HOH
436
A
HOH
160
4
HOH
HOH
437
A
HOH
161
4
HOH
HOH
438
A
HOH
162
4
HOH
HOH
439
A
HOH
163
4
HOH
HOH
440
A
HOH
164
4
HOH
HOH
441
A
HOH
165
4
HOH
HOH
442
A
HOH
166
4
HOH
HOH
443
A
HOH
168
4
HOH
HOH
444
A
HOH
169
4
HOH
HOH
445
A
HOH
170
4
HOH
HOH
446
A
HOH
171
4
HOH
HOH
447
A
HOH
172
4
HOH
HOH
448
A
HOH
173
4
HOH
HOH
449
A
HOH
175
4
HOH
HOH
450
A
HOH
179
4
HOH
HOH
451
A
HOH
180
4
HOH
HOH
452
A
HOH
181
4
HOH
HOH
453
A
HOH
182
4
HOH
HOH
454
A
HOH
183
4
HOH
HOH
455
A
HOH
184
4
HOH
HOH
456
A
HOH
185
4
HOH
HOH
457
A
HOH
186
4
HOH
HOH
458
A
n
1
7
A
n
2
8
A
n
3
9
A
n
4
10
A
GLN
11
n
5
GLN
11
A
GLU
12
n
6
GLU
12
A
GLN
13
n
7
GLN
13
A
GLU
14
n
8
GLU
14
A
GLU
15
n
9
GLU
15
A
VAL
16
n
10
VAL
16
A
ILE
17
n
11
ILE
17
A
THR
18
n
12
THR
18
A
VAL
19
n
13
VAL
19
A
ARG
20
n
14
ARG
20
A
VAL
21
n
15
VAL
21
A
GLN
22
n
16
GLN
22
A
ASP
23
n
17
ASP
23
A
PRO
24
n
18
PRO
24
A
ARG
25
n
19
ARG
25
A
VAL
26
n
20
VAL
26
A
GLN
27
n
21
GLN
27
A
ASN
28
n
22
ASN
28
A
GLU
29
n
23
GLU
29
A
GLY
30
n
24
GLY
30
A
SER
31
n
25
SER
31
A
TRP
32
n
26
TRP
32
A
ASN
33
n
27
ASN
33
A
SER
34
n
28
SER
34
A
TYR
35
n
29
TYR
35
A
VAL
36
n
30
VAL
36
A
ASP
37
n
31
ASP
37
A
TYR
38
n
32
TYR
38
A
MLY
39
n
33
MLY
39
A
ILE
40
n
34
ILE
40
A
PHE
41
n
35
PHE
41
A
LEU
42
n
36
LEU
42
A
HIS
43
n
37
HIS
43
A
THR
44
n
38
THR
44
A
ASN
45
n
39
ASN
45
A
SER
46
n
40
SER
46
A
MLY
47
n
41
MLY
47
A
ALA
48
n
42
ALA
48
A
PHE
49
n
43
PHE
49
A
THR
50
n
44
THR
50
A
ALA
51
n
45
ALA
51
A
MLY
52
n
46
MLY
52
A
THR
53
n
47
THR
53
A
SER
54
n
48
SER
54
A
CYS
55
n
49
CYS
55
A
VAL
56
n
50
VAL
56
A
ARG
57
n
51
ARG
57
A
ARG
58
n
52
ARG
58
A
ARG
59
n
53
ARG
59
A
TYR
60
n
54
TYR
60
A
ARG
61
n
55
ARG
61
A
GLU
62
n
56
GLU
62
A
PHE
63
n
57
PHE
63
A
VAL
64
n
58
VAL
64
A
TRP
65
n
59
TRP
65
A
LEU
66
n
60
LEU
66
A
ARG
67
n
61
ARG
67
A
MLY
68
n
62
MLY
68
A
GLN
69
n
63
GLN
69
A
LEU
70
n
64
LEU
70
A
GLN
71
n
65
GLN
71
A
ARG
72
n
66
ARG
72
A
ASN
73
n
67
ASN
73
A
ALA
74
n
68
ALA
74
A
GLY
75
n
69
GLY
75
A
LEU
76
n
70
LEU
76
A
VAL
77
n
71
VAL
77
A
PRO
78
n
72
PRO
78
A
VAL
79
n
73
VAL
79
A
PRO
80
n
74
PRO
80
A
GLU
81
n
75
GLU
81
A
LEU
82
n
76
LEU
82
A
PRO
83
n
77
PRO
83
A
GLY
84
n
78
GLY
84
A
n
79
85
A
n
80
86
A
THR
87
n
81
THR
87
A
PHE
88
n
82
PHE
88
A
PHE
89
n
83
PHE
89
A
GLY
90
n
84
GLY
90
A
THR
91
n
85
THR
91
A
SER
92
n
86
SER
92
A
ASP
93
n
87
ASP
93
A
GLU
94
n
88
GLU
94
A
PHE
95
n
89
PHE
95
A
ILE
96
n
90
ILE
96
A
GLU
97
n
91
GLU
97
A
MLY
98
n
92
MLY
98
A
ARG
99
n
93
ARG
99
A
ARG
100
n
94
ARG
100
A
GLN
101
n
95
GLN
101
A
GLY
102
n
96
GLY
102
A
LEU
103
n
97
LEU
103
A
GLN
104
n
98
GLN
104
A
HIS
105
n
99
HIS
105
A
PHE
106
n
100
PHE
106
A
LEU
107
n
101
LEU
107
A
GLU
108
n
102
GLU
108
A
MLY
109
n
103
MLY
109
A
VAL
110
n
104
VAL
110
A
LEU
111
n
105
LEU
111
A
GLN
112
n
106
GLN
112
A
SER
113
n
107
SER
113
A
VAL
114
n
108
VAL
114
A
VAL
115
n
109
VAL
115
A
LEU
116
n
110
LEU
116
A
LEU
117
n
111
LEU
117
A
SER
118
n
112
SER
118
A
ASP
119
n
113
ASP
119
A
SER
120
n
114
SER
120
A
GLN
121
n
115
GLN
121
A
LEU
122
n
116
LEU
122
A
HIS
123
n
117
HIS
123
A
LEU
124
n
118
LEU
124
A
PHE
125
n
119
PHE
125
A
LEU
126
n
120
LEU
126
A
GLN
127
n
121
GLN
127
A
SER
128
n
122
SER
128
A
GLN
129
n
123
GLN
129
A
LEU
130
n
124
LEU
130
A
SER
131
n
125
SER
131
A
VAL
132
n
126
VAL
132
A
PRO
133
n
127
PRO
133
A
GLU
134
n
128
GLU
134
A
ILE
135
n
129
ILE
135
A
GLU
136
n
130
GLU
136
A
ALA
137
n
131
ALA
137
A
CYS
138
n
132
CYS
138
A
VAL
139
n
133
VAL
139
A
GLN
140
n
134
GLN
140
A
GLY
141
n
135
GLY
141
A
ARG
142
n
136
ARG
142
A
SER
143
n
137
SER
143
A
THR
144
n
138
THR
144
A
MET
145
n
139
MET
145
A
THR
146
n
140
THR
146
A
VAL
147
n
141
VAL
147
A
SER
148
n
142
SER
148
A
ASP
149
n
143
ASP
149
A
ALA
150
n
144
ALA
150
A
ILE
151
n
145
ILE
151
A
LEU
152
n
146
LEU
152
A
ARG
153
n
147
ARG
153
A
TYR
154
n
148
TYR
154
A
ALA
155
n
149
ALA
155
A
MET
156
n
150
MET
156
A
SER
157
n
151
SER
157
A
ASN
158
n
152
ASN
158
A
CYS
159
n
153
CYS
159
A
GLY
160
n
154
GLY
160
A
n
155
161
A
n
156
162
A
n
157
163
A
n
158
164
A
n
159
165
A
n
160
166
A
n
161
167
A
n
162
168
A
n
163
169
A
n
164
170
A
n
165
171
A
n
166
172
A
n
167
173
A
n
168
174
A
n
169
175
A
n
170
176
A
n
171
177
A
n
172
178
A
author_and_software_defined_assembly
PISA
1
monomeric
A
MLY
39
N-DIMETHYL-LYSINE
A
MLY
33
LYS
A
MLY
47
N-DIMETHYL-LYSINE
A
MLY
41
LYS
A
MLY
52
N-DIMETHYL-LYSINE
A
MLY
46
LYS
A
MLY
68
N-DIMETHYL-LYSINE
A
MLY
62
LYS
A
MLY
98
N-DIMETHYL-LYSINE
A
MLY
92
LYS
A
MLY
109
N-DIMETHYL-LYSINE
A
MLY
103
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
27
A
N
GLN
21
A
O
TYR
35
A
O
TYR
29
A
N
ILE
40
A
N
ILE
34
A
O
VAL
56
A
O
VAL
50
1
A
MET
7
A
MET
1
1
Y
1
A
SER
8
A
SER
2
1
Y
1
A
GLU
9
A
GLU
3
1
Y
1
A
ASN
10
A
ASN
4
1
Y
1
A
LYS
85
A
LYS
79
1
Y
1
A
SER
86
A
SER
80
1
Y
1
A
TRP
161
A
TRP
155
1
Y
1
A
ALA
162
A
ALA
156
1
Y
1
A
GLN
163
A
GLN
157
1
Y
1
A
GLU
164
A
GLU
158
1
Y
1
A
GLU
165
A
GLU
159
1
Y
1
A
ARG
166
A
ARG
160
1
Y
1
A
GLN
167
A
GLN
161
1
Y
1
A
SER
168
A
SER
162
1
Y
1
A
SER
169
A
SER
163
1
Y
1
A
SER
170
A
SER
164
1
Y
1
A
LEU
171
A
LEU
165
1
Y
1
A
GLU
172
A
GLU
166
1
Y
1
A
HIS
173
A
HIS
167
1
Y
1
A
HIS
174
A
HIS
168
1
Y
1
A
HIS
175
A
HIS
169
1
Y
1
A
HIS
176
A
HIS
170
1
Y
1
A
HIS
177
A
HIS
171
1
Y
1
A
HIS
178
A
HIS
172
1
Y
1
A
A
O
O
HOH
HOH
379
426
1.99
1
A
A
OE1
O
GLN
HOH
121
448
2.03
1
A
A
OE1
O
GLU
HOH
94
355
2.11
1
4.25
0.50
120.30
124.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
1
-4.21
0.50
120.30
116.09
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
57
57
57
N
1
-3.09
0.50
120.30
117.21
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
99
99
99
N
1
A
ASN
33
-95.36
30.57
76.680
24.3801
9.890
-0.3500
0.0000
0.0000
0.7600
0.0000
-0.4100
0.9570
0.9210
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY
0.2374
0.1860
0.1885
1.6000
34.2900
1142
22322
5.1000
99.0300
0.2509
0.2013
1.000
0.500
0.8703
1.6360
0.0590
0.0925
0.1008
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0920
0.1010
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.6000
34.2900
158
1379
7
0
1214
0.015
0.019
1299
0.001
0.020
910
1.751
1.978
1771
0.965
3.000
2212
5.835
5.000
167
31.183
23.182
66
15.095
15.000
216
15.037
15.000
14
0.112
0.200
203
0.009
0.020
1440
0.001
0.020
283
0.3320
0.2760
1.6410
66
1425
1491
20
99.6700
1.600
45.362
4IKD
22474
22474
0.123
1
7.200
4.200
99.700
0.598
0.521
1.600
1.690
1.400
13827
3254
0.288
0.598
0.521
1
2.800
4.200
99.800
0.410
0.358
1.690
1.790
2.000
13056
3049
0.196
0.410
0.358
1
3.800
4.300
99.900
0.263
0.230
1.790
1.910
3.100
12382
2891
0.126
0.263
0.230
1
5.300
4.300
100.000
0.185
0.161
1.910
2.070
4.100
11510
2689
0.088
0.185
0.161
1
7.000
4.300
99.900
0.154
0.134
2.070
2.260
4.500
10607
2495
0.074
0.154
0.134
1
8.500
4.300
100.000
0.139
0.121
2.260
2.530
4.900
9607
2270
0.067
0.139
0.121
1
9.500
4.200
100.000
0.137
0.120
2.530
2.920
4.600
8399
2016
0.066
0.137
0.120
1
10.300
4.200
99.900
0.136
0.119
2.920
3.580
4.500
6944
1693
0.065
0.136
0.119
1
11.200
4.100
99.000
0.115
0.099
3.580
5.060
5.600
5241
1356
0.057
0.115
0.099
1
11.600
3.900
98.900
0.120
0.102
5.060
34.291
5.200
2871
761
0.061
0.120
0.102
1
11.300
3.800
95.000
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
Sorting nexin-11
Crystal structure of SNX11 PX domain
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
TYR
60
A
TYR
54
HELX_P
A
ALA
74
A
ALA
68
1
1
15
A
THR
91
A
THR
85
HELX_P
A
LEU
111
A
LEU
105
1
2
21
A
SER
113
A
SER
107
HELX_P
A
SER
118
A
SER
112
1
3
6
A
ASP
119
A
ASP
113
HELX_P
A
SER
128
A
SER
122
1
4
10
A
SER
131
A
SER
125
HELX_P
A
GLN
140
A
GLN
134
1
5
10
A
THR
146
A
THR
140
HELX_P
A
SER
157
A
SER
151
1
6
12
covale
1.330
A
TYR
38
A
C
TYR
32
1_555
A
MLY
39
A
N
MLY
33
1_555
covale
1.339
A
MLY
39
A
C
MLY
33
1_555
A
ILE
40
A
N
ILE
34
1_555
covale
1.337
A
SER
46
A
C
SER
40
1_555
A
MLY
47
A
N
MLY
41
1_555
covale
1.334
A
MLY
47
A
C
MLY
41
1_555
A
ALA
48
A
N
ALA
42
1_555
covale
1.321
A
ALA
51
A
C
ALA
45
1_555
A
MLY
52
A
N
MLY
46
1_555
covale
1.316
A
MLY
52
A
C
MLY
46
1_555
A
THR
53
A
N
THR
47
1_555
covale
1.328
A
ARG
67
A
C
ARG
61
1_555
A
MLY
68
A
N
MLY
62
1_555
covale
1.327
A
MLY
68
A
C
MLY
62
1_555
A
GLN
69
A
N
GLN
63
1_555
covale
1.316
A
GLU
97
A
C
GLU
91
1_555
A
MLY
98
A
N
MLY
92
1_555
covale
1.333
A
MLY
98
A
C
MLY
92
1_555
A
ARG
99
A
N
ARG
93
1_555
covale
1.315
A
GLU
108
A
C
GLU
102
1_555
A
MLY
109
A
N
MLY
103
1_555
covale
1.325
A
MLY
109
A
C
MLY
103
1_555
A
VAL
110
A
N
VAL
104
1_555
metalc
2.542
A
NA
204
E
NA
NA
1_555
A
HOH
325
I
O
HOH
1_555
metalc
2.594
A
NA
206
G
NA
NA
1_555
A
HOH
316
I
O
HOH
1_555
metalc
2.648
A
NA
205
F
NA
NA
1_555
A
HOH
357
I
O
HOH
1_555
metalc
2.988
A
NA
207
H
NA
NA
1_555
A
HOH
331
I
O
HOH
1_555
PROTEIN TRANSPORT
SNX11, PX domain, PROTEIN TRANSPORT
SNX11_HUMAN
UNP
1
7
Q9Y5W9
MSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKS
TFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEER
QSSS
7
170
4IKD
7
170
Q9Y5W9
A
1
1
164
1
EXPRESSION TAG
LEU
171
4IKD
A
Q9Y5W9
UNP
165
1
EXPRESSION TAG
GLU
172
4IKD
A
Q9Y5W9
UNP
166
1
EXPRESSION TAG
HIS
173
4IKD
A
Q9Y5W9
UNP
167
1
EXPRESSION TAG
HIS
174
4IKD
A
Q9Y5W9
UNP
168
1
EXPRESSION TAG
HIS
175
4IKD
A
Q9Y5W9
UNP
169
1
EXPRESSION TAG
HIS
176
4IKD
A
Q9Y5W9
UNP
170
1
EXPRESSION TAG
HIS
177
4IKD
A
Q9Y5W9
UNP
171
1
EXPRESSION TAG
HIS
178
4IKD
A
Q9Y5W9
UNP
172
3
anti-parallel
anti-parallel
A
ILE
17
A
ILE
11
A
GLN
27
A
GLN
21
A
TYR
35
A
TYR
29
A
THR
44
A
THR
38
A
THR
53
A
THR
47
A
ARG
59
A
ARG
53
BINDING SITE FOR RESIDUE CL A 201
Software
4
BINDING SITE FOR RESIDUE CL A 202
Software
2
BINDING SITE FOR RESIDUE CL A 203
Software
1
BINDING SITE FOR RESIDUE NA A 204
Software
2
BINDING SITE FOR RESIDUE NA A 205
Software
4
BINDING SITE FOR RESIDUE NA A 206
Software
3
BINDING SITE FOR RESIDUE NA A 207
Software
4
A
ALA
48
A
ALA
42
4
1_555
A
THR
50
A
THR
44
4
1_555
A
HIS
123
A
HIS
117
4
1_555
A
HOH
425
I
HOH
4
1_555
A
PRO
80
A
PRO
74
2
1_555
A
GLU
81
A
GLU
75
2
1_555
A
GLN
22
A
GLN
16
1
1_555
A
MET
156
A
MET
150
2
1_555
A
HOH
325
I
HOH
2
1_555
A
MET
145
A
MET
139
4
4_545
A
ARG
153
A
ARG
147
4
4_545
A
NA
206
G
NA
4
4_545
A
HOH
357
I
HOH
4
1_555
A
MET
145
A
MET
139
3
1_555
A
NA
205
F
NA
3
4_445
A
HOH
316
I
HOH
3
1_555
A
GLN
11
A
GLN
5
4
1_455
A
ILE
96
A
ILE
90
4
1_555
A
HOH
331
I
HOH
4
1_555
A
HOH
446
I
HOH
4
1_455
19
P 21 21 21