0.019385
0.000000
0.000000
-0.000000
0.013824
0.000000
0.000000
-0.000000
0.010560
0.00000
0.00000
0.00000
Legler, P.M.
Compton, J.R.
Millard, C.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
51.585
72.336
94.694
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Toxins (Basel)
0353
5
224
248
10.3390/toxins5020224
23364220
Disruption of the Putative Vascular Leak Peptide Sequence in the Stabilized Ricin Vaccine Candidate RTA1-33/44-198.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
150
1
CCD
2012-06-18
Bruker Platinum 135
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
BRUKER AXS MICROSTAR-H
21414.203
Ricin
3.2.2.22
unp residues 36-233
R48C, T77C, D75N
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
79
nat
water
Ricin A chain, rRNA N-glycosidase, Linker peptide, Ricin B chain
no
no
MIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTVLPNCVGLPINQRFILVELSNHAELSVTLALNVCNAYVVGYRAGNS
AYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI
ICIQMISEAARFQYIEGEMRTRIRYNRRS
MIFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTVLPNCVGLPINQRFILVELSNHAELSVTLALNVCNAYVVGYRAGNS
AYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTLARSFI
ICIQMISEAARFQYIEGEMRTRIRYNRRS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Castor bean
sample
3988
Ricinus communis
469008
Escherichia coli
BL21(DE3)
1
2.06
40.37
VAPOR DIFFUSION, HANGING DROP
6.4
0.17 M Ammonium Sulfate, 25.5% (w/v) Peg 4000, 15% Glycerol , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
repository
Initial release
1
0
2013-02-13
Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C
Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, V49C/E99C
RCSB
Y
RCSB
2013-01-03
REL
REL
SO4
SULFATE ION
HOH
water
SO4
999
2
SO4
SO4
201
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
HOH
70
3
HOH
HOH
370
A
HOH
71
3
HOH
HOH
371
A
HOH
72
3
HOH
HOH
372
A
HOH
73
3
HOH
HOH
373
A
HOH
74
3
HOH
HOH
374
A
HOH
75
3
HOH
HOH
375
A
HOH
76
3
HOH
HOH
376
A
HOH
77
3
HOH
HOH
377
A
HOH
78
3
HOH
HOH
378
A
HOH
79
3
HOH
HOH
379
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
TYR
6
n
7
TYR
6
A
PRO
7
n
8
PRO
7
A
ILE
8
n
9
ILE
8
A
ILE
9
n
10
ILE
9
A
ASN
10
n
11
ASN
10
A
PHE
11
n
12
PHE
11
A
THR
12
n
13
THR
12
A
THR
13
n
14
THR
13
A
ALA
14
n
15
ALA
14
A
GLY
15
n
16
GLY
15
A
ALA
16
n
17
ALA
16
A
THR
17
n
18
THR
17
A
VAL
18
n
19
VAL
18
A
GLN
19
n
20
GLN
19
A
SER
20
n
21
SER
20
A
TYR
21
n
22
TYR
21
A
THR
22
n
23
THR
22
A
ASN
23
n
24
ASN
23
A
PHE
24
n
25
PHE
24
A
ILE
25
n
26
ILE
25
A
ARG
26
n
27
ARG
26
A
ALA
27
n
28
ALA
27
A
VAL
28
n
29
VAL
28
A
ARG
29
n
30
ARG
29
A
GLY
30
n
31
GLY
30
A
ARG
31
n
32
ARG
31
A
LEU
32
n
33
LEU
32
A
THR
33
n
34
THR
33
A
VAL
44
n
35
VAL
44
A
LEU
45
n
36
LEU
45
A
PRO
46
n
37
PRO
46
A
ASN
47
n
38
ASN
47
A
CYS
48
n
39
CYS
48
A
VAL
49
n
40
VAL
49
A
GLY
50
n
41
GLY
50
A
LEU
51
n
42
LEU
51
A
PRO
52
n
43
PRO
52
A
ILE
53
n
44
ILE
53
A
ASN
54
n
45
ASN
54
A
GLN
55
n
46
GLN
55
A
ARG
56
n
47
ARG
56
A
PHE
57
n
48
PHE
57
A
ILE
58
n
49
ILE
58
A
LEU
59
n
50
LEU
59
A
VAL
60
n
51
VAL
60
A
GLU
61
n
52
GLU
61
A
LEU
62
n
53
LEU
62
A
SER
63
n
54
SER
63
A
ASN
64
n
55
ASN
64
A
HIS
65
n
56
HIS
65
A
ALA
66
n
57
ALA
66
A
GLU
67
n
58
GLU
67
A
LEU
68
n
59
LEU
68
A
SER
69
n
60
SER
69
A
VAL
70
n
61
VAL
70
A
THR
71
n
62
THR
71
A
LEU
72
n
63
LEU
72
A
ALA
73
n
64
ALA
73
A
LEU
74
n
65
LEU
74
A
ASN
75
n
66
ASN
75
A
VAL
76
n
67
VAL
76
A
CYS
77
n
68
CYS
77
A
ASN
78
n
69
ASN
78
A
ALA
79
n
70
ALA
79
A
TYR
80
n
71
TYR
80
A
VAL
81
n
72
VAL
81
A
VAL
82
n
73
VAL
82
A
GLY
83
n
74
GLY
83
A
TYR
84
n
75
TYR
84
A
ARG
85
n
76
ARG
85
A
ALA
86
n
77
ALA
86
A
GLY
87
n
78
GLY
87
A
ASN
88
n
79
ASN
88
A
SER
89
n
80
SER
89
A
ALA
90
n
81
ALA
90
A
TYR
91
n
82
TYR
91
A
PHE
92
n
83
PHE
92
A
PHE
93
n
84
PHE
93
A
HIS
94
n
85
HIS
94
A
PRO
95
n
86
PRO
95
A
ASP
96
n
87
ASP
96
A
ASN
97
n
88
ASN
97
A
GLN
98
n
89
GLN
98
A
GLU
99
n
90
GLU
99
A
ASP
100
n
91
ASP
100
A
ALA
101
n
92
ALA
101
A
GLU
102
n
93
GLU
102
A
ALA
103
n
94
ALA
103
A
ILE
104
n
95
ILE
104
A
THR
105
n
96
THR
105
A
HIS
106
n
97
HIS
106
A
LEU
107
n
98
LEU
107
A
PHE
108
n
99
PHE
108
A
THR
109
n
100
THR
109
A
ASP
110
n
101
ASP
110
A
VAL
111
n
102
VAL
111
A
GLN
112
n
103
GLN
112
A
ASN
113
n
104
ASN
113
A
ARG
114
n
105
ARG
114
A
TYR
115
n
106
TYR
115
A
THR
116
n
107
THR
116
A
PHE
117
n
108
PHE
117
A
ALA
118
n
109
ALA
118
A
PHE
119
n
110
PHE
119
A
GLY
120
n
111
GLY
120
A
GLY
121
n
112
GLY
121
A
ASN
122
n
113
ASN
122
A
TYR
123
n
114
TYR
123
A
ASP
124
n
115
ASP
124
A
ARG
125
n
116
ARG
125
A
LEU
126
n
117
LEU
126
A
GLU
127
n
118
GLU
127
A
GLN
128
n
119
GLN
128
A
LEU
129
n
120
LEU
129
A
ALA
130
n
121
ALA
130
A
GLY
131
n
122
GLY
131
A
n
123
132
A
n
124
133
A
n
125
134
A
n
126
135
A
n
127
136
A
ILE
137
n
128
ILE
137
A
GLU
138
n
129
GLU
138
A
LEU
139
n
130
LEU
139
A
GLY
140
n
131
GLY
140
A
ASN
141
n
132
ASN
141
A
GLY
142
n
133
GLY
142
A
PRO
143
n
134
PRO
143
A
LEU
144
n
135
LEU
144
A
GLU
145
n
136
GLU
145
A
GLU
146
n
137
GLU
146
A
ALA
147
n
138
ALA
147
A
ILE
148
n
139
ILE
148
A
SER
149
n
140
SER
149
A
ALA
150
n
141
ALA
150
A
LEU
151
n
142
LEU
151
A
TYR
152
n
143
TYR
152
A
TYR
153
n
144
TYR
153
A
TYR
154
n
145
TYR
154
A
SER
155
n
146
SER
155
A
THR
156
n
147
THR
156
A
GLY
157
n
148
GLY
157
A
GLY
158
n
149
GLY
158
A
THR
159
n
150
THR
159
A
GLN
160
n
151
GLN
160
A
LEU
161
n
152
LEU
161
A
PRO
162
n
153
PRO
162
A
THR
163
n
154
THR
163
A
LEU
164
n
155
LEU
164
A
ALA
165
n
156
ALA
165
A
ARG
166
n
157
ARG
166
A
SER
167
n
158
SER
167
A
PHE
168
n
159
PHE
168
A
ILE
169
n
160
ILE
169
A
ILE
170
n
161
ILE
170
A
CYS
171
n
162
CYS
171
A
ILE
172
n
163
ILE
172
A
GLN
173
n
164
GLN
173
A
MET
174
n
165
MET
174
A
ILE
175
n
166
ILE
175
A
SER
176
n
167
SER
176
A
GLU
177
n
168
GLU
177
A
ALA
178
n
169
ALA
178
A
ALA
179
n
170
ALA
179
A
ARG
180
n
171
ARG
180
A
PHE
181
n
172
PHE
181
A
GLN
182
n
173
GLN
182
A
TYR
183
n
174
TYR
183
A
ILE
184
n
175
ILE
184
A
GLU
185
n
176
GLU
185
A
GLY
186
n
177
GLY
186
A
GLU
187
n
178
GLU
187
A
MET
188
n
179
MET
188
A
n
180
189
A
n
181
190
A
n
182
191
A
n
183
192
A
n
184
193
A
n
185
194
A
n
186
195
A
n
187
196
A
n
188
197
A
n
189
198
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
9
A
N
ILE
10
A
O
GLU
61
A
O
GLU
52
A
N
LEU
62
A
N
LEU
53
A
O
VAL
70
A
O
VAL
61
A
N
ALA
73
A
N
ALA
64
A
O
GLY
83
A
O
GLY
74
A
N
TYR
84
A
N
TYR
75
A
O
TYR
91
A
O
TYR
82
A
N
ALA
90
A
N
ALA
81
A
O
ASN
113
A
O
ASN
104
1
A
MET
0
A
MET
1
1
Y
1
A
ILE
1
A
ILE
2
1
Y
1
A
PHE
2
A
PHE
3
1
Y
1
A
PRO
3
A
PRO
4
1
Y
1
A
LYS
4
A
LYS
5
1
Y
1
A
GLN
5
A
GLN
6
1
Y
1
A
ASN
132
A
ASN
123
1
Y
1
A
LEU
133
A
LEU
124
1
Y
1
A
ARG
134
A
ARG
125
1
Y
1
A
GLU
135
A
GLU
126
1
Y
1
A
ASN
136
A
ASN
127
1
Y
1
A
ARG
189
A
ARG
180
1
Y
1
A
THR
190
A
THR
181
1
Y
1
A
ARG
191
A
ARG
182
1
Y
1
A
ILE
192
A
ILE
183
1
Y
1
A
ARG
193
A
ARG
184
1
Y
1
A
TYR
194
A
TYR
185
1
Y
1
A
ASN
195
A
ASN
186
1
Y
1
A
ARG
196
A
ARG
187
1
Y
1
A
ARG
197
A
ARG
188
1
Y
1
A
SER
198
A
SER
189
1
Y
1
A
ASN
64
-116.92
-164.17
1
A
ALA
79
73.58
-5.04
1
A
ASN
97
-166.94
-166.64
1
A
ILE
175
-122.78
-70.62
23.598
-0.50
0.00
0.00
-0.94
0.00
1.44
0.923
0.902
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24229
0.21431
0.21560
2.25
57.48
405
8721
8233
4.7
99.05
RANDOM
1
THROUGHOUT
3.0
MOLECULAR REPLACEMENT
0.359
0.229
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.25
57.48
79
1401
5
0
1317
0.015
0.019
1350
0.000
0.020
1250
1.369
1.950
1837
3.614
3.001
2844
3.177
5.000
165
38.313
23.824
68
13.653
15.000
202
23.637
15.000
9
0.083
0.200
207
0.007
0.020
1566
0.012
0.020
341
0.319
0.277
2.308
24
529
20
89.92
20.2
2.25
57.48
4IMV
8721
8640
3.0
0.1191
1
13.01
6.88
99.1
2.25
2.34
3.62
939
0.4191
1
4.18
91.6
data collection
PROTEUM PLUS
PLUS
phasing
AMoRE
refinement
REFMAC
5.7.0032
data reduction
PROTEUM PLUS
PLUS
data scaling
PROTEUM PLUS
PLUS
Ricin (E.C.3.2.2.22)
Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C/D75N
1
N
N
2
N
N
3
N
N
A
THR
17
A
THR
18
HELX_P
A
GLY
30
A
GLY
31
1
1
14
A
PRO
52
A
PRO
43
HELX_P
A
GLN
55
A
GLN
46
5
2
4
A
ASN
97
A
ASN
88
HELX_P
A
ILE
104
A
ILE
95
1
3
8
A
THR
105
A
THR
96
HELX_P
A
LEU
107
A
LEU
98
5
4
3
A
ASN
122
A
ASN
113
HELX_P
A
GLY
131
A
GLY
122
1
5
10
A
GLY
140
A
GLY
131
HELX_P
A
SER
155
A
SER
146
1
6
16
A
GLN
160
A
GLN
151
HELX_P
A
ILE
175
A
ILE
166
1
7
16
A
ILE
175
A
ILE
166
HELX_P
A
GLU
187
A
GLU
178
1
8
13
disulf
2.023
A
CYS
77
A
SG
CYS
68
1_555
A
CYS
48
A
SG
CYS
39
1_555
HYDROLASE
Ricin, immunogen, vaccine, thermal stable, Ribosome Inactivating Protein (RIP), Hydrolase
RICI_RICCO
UNP
1
36
P02879
IFPKQYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAY
VVGYRAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQ
LPTLARSFIICIQMISEAARFQYIEGEMRTRIRYNRRS
36
233
4IMV
1
198
P02879
A
1
2
189
1
INITIATING METHIONINE
MET
0
4IMV
A
P02879
UNP
1
1
THR
DELETION
4IMV
A
P02879
UNP
69
1
GLY
DELETION
4IMV
A
P02879
UNP
70
1
ALA
DELETION
4IMV
A
P02879
UNP
71
1
ASP
DELETION
4IMV
A
P02879
UNP
72
1
VAL
DELETION
4IMV
A
P02879
UNP
73
1
ARG
DELETION
4IMV
A
P02879
UNP
74
1
HIS
DELETION
4IMV
A
P02879
UNP
75
1
GLU
DELETION
4IMV
A
P02879
UNP
76
1
ILE
DELETION
4IMV
A
P02879
UNP
77
1
PRO
DELETION
4IMV
A
P02879
UNP
78
1
ARG
ENGINEERED MUTATION
CYS
48
4IMV
A
P02879
UNP
83
39
1
ASP
ENGINEERED MUTATION
ASN
75
4IMV
A
P02879
UNP
110
66
1
THR
ENGINEERED MUTATION
CYS
77
4IMV
A
P02879
UNP
112
68
6
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ILE
8
A
ILE
9
A
THR
12
A
THR
13
A
PHE
57
A
PHE
48
A
SER
63
A
SER
54
A
SER
69
A
SER
60
A
ASN
75
A
ASN
66
A
VAL
81
A
VAL
72
A
ALA
86
A
ALA
77
A
SER
89
A
SER
80
A
PHE
92
A
PHE
83
A
ASN
113
A
ASN
104
A
THR
116
A
THR
107
BINDING SITE FOR RESIDUE SO4 A 201
Software
6
A
HIS
65
A
HIS
56
6
7_555
A
PHE
119
A
PHE
110
6
1_555
A
GLY
120
A
GLY
111
6
1_555
A
ASN
122
A
ASN
113
6
1_555
A
ARG
125
A
ARG
116
6
1_555
A
HOH
332
C
HOH
6
1_555
23
I 2 2 2