0.010248
0.005917
0.000000
0.000000
0.011833
0.000000
0.000000
0.000000
0.003697
0.00000
0.00000
0.00000
Prasad, B.V.V.
Muhaxhiri, Z.
Deng, L.
Shanker, S.
Sankaran, B.
Estes, M.K.
Palzkill, T.
Song, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
97.582
97.582
270.458
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
87
4281
4292
10.1128/JVI.02869-12
23365454
Structural basis of substrate specificity and protease inhibition in norwalk virus.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
77
1
CCD
2008-11-30
ADSC QUANTUM 315
Rosenbaum-Rock high-resolution double-crystal monochromator. LN2 cooled first crystal, sagittal focusing 2nd crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97935
1.0
19-ID
APS
0.97935
SYNCHROTRON
APS BEAMLINE 19-ID
19576.535
C-like protease
3.4.22.66
norwalk virus protease (unp residues 1100-1281)
2
man
polymer
18.015
water
130
nat
water
Genome polyprotein
no
yes
EAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKK(MSE)RPDLTG(MSE)
VLEEGCPEGTVCSVLIKRDSGELLPLAVR(MSE)GAIAS(MSE)RIQGRLVHGQSG(MSE)LLTGANAKG(MSE)DLGTI
PGDCGAPYVHKRGNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE
EAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEEGCPE
GTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAA
ATKSGNTVVCAVQAGEGETALE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hu/NV/NV/1968/US
GI/Human/United States/Norwalk/1968
sample
ORF1
524364
Norovirus
562
Escherichia coli
1
4.75
74.09
VAPOR DIFFUSION, HANGING DROP
6.5
1.6-1.8 M lithium sulfate and 0.1 M sodium cacodylate, 30% glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
293.15
repository
Initial release
Database references
1
0
2013-02-20
1
1
2013-04-10
RCSB
Y
RCSB
2013-01-03
REL
REL
HOH
water
HOH
2
2
HOH
HOH
201
A
HOH
3
2
HOH
HOH
202
A
HOH
4
2
HOH
HOH
203
A
HOH
5
2
HOH
HOH
204
A
HOH
7
2
HOH
HOH
205
A
HOH
8
2
HOH
HOH
206
A
HOH
10
2
HOH
HOH
207
A
HOH
16
2
HOH
HOH
208
A
HOH
18
2
HOH
HOH
209
A
HOH
20
2
HOH
HOH
210
A
HOH
21
2
HOH
HOH
211
A
HOH
22
2
HOH
HOH
212
A
HOH
27
2
HOH
HOH
213
A
HOH
28
2
HOH
HOH
214
A
HOH
31
2
HOH
HOH
215
A
HOH
34
2
HOH
HOH
216
A
HOH
35
2
HOH
HOH
217
A
HOH
36
2
HOH
HOH
218
A
HOH
37
2
HOH
HOH
219
A
HOH
40
2
HOH
HOH
220
A
HOH
41
2
HOH
HOH
221
A
HOH
43
2
HOH
HOH
222
A
HOH
46
2
HOH
HOH
223
A
HOH
50
2
HOH
HOH
224
A
HOH
51
2
HOH
HOH
225
A
HOH
54
2
HOH
HOH
226
A
HOH
55
2
HOH
HOH
227
A
HOH
59
2
HOH
HOH
228
A
HOH
62
2
HOH
HOH
229
A
HOH
64
2
HOH
HOH
230
A
HOH
66
2
HOH
HOH
231
A
HOH
69
2
HOH
HOH
232
A
HOH
72
2
HOH
HOH
233
A
HOH
73
2
HOH
HOH
234
A
HOH
75
2
HOH
HOH
235
A
HOH
76
2
HOH
HOH
236
A
HOH
77
2
HOH
HOH
237
A
HOH
79
2
HOH
HOH
238
A
HOH
81
2
HOH
HOH
239
A
HOH
82
2
HOH
HOH
240
A
HOH
83
2
HOH
HOH
241
A
HOH
85
2
HOH
HOH
242
A
HOH
86
2
HOH
HOH
243
A
HOH
88
2
HOH
HOH
244
A
HOH
89
2
HOH
HOH
245
A
HOH
90
2
HOH
HOH
246
A
HOH
91
2
HOH
HOH
247
A
HOH
92
2
HOH
HOH
248
A
HOH
93
2
HOH
HOH
249
A
HOH
94
2
HOH
HOH
250
A
HOH
95
2
HOH
HOH
251
A
HOH
96
2
HOH
HOH
252
A
HOH
97
2
HOH
HOH
253
A
HOH
98
2
HOH
HOH
254
A
HOH
99
2
HOH
HOH
255
A
HOH
100
2
HOH
HOH
256
A
HOH
102
2
HOH
HOH
257
A
HOH
106
2
HOH
HOH
258
A
HOH
108
2
HOH
HOH
259
A
HOH
109
2
HOH
HOH
260
A
HOH
113
2
HOH
HOH
261
A
HOH
116
2
HOH
HOH
262
A
HOH
117
2
HOH
HOH
263
A
HOH
118
2
HOH
HOH
264
A
HOH
120
2
HOH
HOH
265
A
HOH
121
2
HOH
HOH
266
A
HOH
125
2
HOH
HOH
267
A
HOH
126
2
HOH
HOH
268
A
HOH
128
2
HOH
HOH
269
A
HOH
1
2
HOH
HOH
201
B
HOH
6
2
HOH
HOH
202
B
HOH
9
2
HOH
HOH
203
B
HOH
11
2
HOH
HOH
204
B
HOH
12
2
HOH
HOH
205
B
HOH
13
2
HOH
HOH
206
B
HOH
14
2
HOH
HOH
207
B
HOH
15
2
HOH
HOH
208
B
HOH
17
2
HOH
HOH
209
B
HOH
19
2
HOH
HOH
210
B
HOH
23
2
HOH
HOH
211
B
HOH
24
2
HOH
HOH
212
B
HOH
25
2
HOH
HOH
213
B
HOH
26
2
HOH
HOH
214
B
HOH
29
2
HOH
HOH
215
B
HOH
30
2
HOH
HOH
216
B
HOH
32
2
HOH
HOH
217
B
HOH
33
2
HOH
HOH
218
B
HOH
38
2
HOH
HOH
219
B
HOH
39
2
HOH
HOH
220
B
HOH
42
2
HOH
HOH
221
B
HOH
44
2
HOH
HOH
222
B
HOH
45
2
HOH
HOH
223
B
HOH
47
2
HOH
HOH
224
B
HOH
48
2
HOH
HOH
225
B
HOH
49
2
HOH
HOH
226
B
HOH
52
2
HOH
HOH
227
B
HOH
53
2
HOH
HOH
228
B
HOH
56
2
HOH
HOH
229
B
HOH
57
2
HOH
HOH
230
B
HOH
58
2
HOH
HOH
231
B
HOH
60
2
HOH
HOH
232
B
HOH
61
2
HOH
HOH
233
B
HOH
63
2
HOH
HOH
234
B
HOH
65
2
HOH
HOH
235
B
HOH
67
2
HOH
HOH
236
B
HOH
68
2
HOH
HOH
237
B
HOH
70
2
HOH
HOH
238
B
HOH
71
2
HOH
HOH
239
B
HOH
74
2
HOH
HOH
240
B
HOH
78
2
HOH
HOH
241
B
HOH
80
2
HOH
HOH
242
B
HOH
84
2
HOH
HOH
243
B
HOH
87
2
HOH
HOH
244
B
HOH
101
2
HOH
HOH
245
B
HOH
103
2
HOH
HOH
246
B
HOH
104
2
HOH
HOH
247
B
HOH
105
2
HOH
HOH
248
B
HOH
107
2
HOH
HOH
249
B
HOH
110
2
HOH
HOH
250
B
HOH
111
2
HOH
HOH
251
B
HOH
112
2
HOH
HOH
252
B
HOH
114
2
HOH
HOH
253
B
HOH
115
2
HOH
HOH
254
B
HOH
119
2
HOH
HOH
255
B
HOH
122
2
HOH
HOH
256
B
HOH
123
2
HOH
HOH
257
B
HOH
124
2
HOH
HOH
258
B
HOH
127
2
HOH
HOH
259
B
HOH
129
2
HOH
HOH
260
B
HOH
130
2
HOH
HOH
261
B
GLU
0
n
1
GLU
0
A
ALA
1
n
2
ALA
1
A
PRO
2
n
3
PRO
2
A
PRO
3
n
4
PRO
3
A
THR
4
n
5
THR
4
A
LEU
5
n
6
LEU
5
A
TRP
6
n
7
TRP
6
A
SER
7
n
8
SER
7
A
ARG
8
n
9
ARG
8
A
VAL
9
n
10
VAL
9
A
THR
10
n
11
THR
10
A
LYS
11
n
12
LYS
11
A
PHE
12
n
13
PHE
12
A
GLY
13
n
14
GLY
13
A
SER
14
n
15
SER
14
A
GLY
15
n
16
GLY
15
A
TRP
16
n
17
TRP
16
A
GLY
17
n
18
GLY
17
A
PHE
18
n
19
PHE
18
A
TRP
19
n
20
TRP
19
A
VAL
20
n
21
VAL
20
A
SER
21
n
22
SER
21
A
PRO
22
n
23
PRO
22
A
THR
23
n
24
THR
23
A
VAL
24
n
25
VAL
24
A
PHE
25
n
26
PHE
25
A
ILE
26
n
27
ILE
26
A
THR
27
n
28
THR
27
A
THR
28
n
29
THR
28
A
THR
29
n
30
THR
29
A
HIS
30
n
31
HIS
30
A
VAL
31
n
32
VAL
31
A
VAL
32
n
33
VAL
32
A
PRO
33
n
34
PRO
33
A
THR
34
n
35
THR
34
A
GLY
35
n
36
GLY
35
A
VAL
36
n
37
VAL
36
A
LYS
37
n
38
LYS
37
A
GLU
38
n
39
GLU
38
A
PHE
39
n
40
PHE
39
A
PHE
40
n
41
PHE
40
A
GLY
41
n
42
GLY
41
A
GLU
42
n
43
GLU
42
A
PRO
43
n
44
PRO
43
A
LEU
44
n
45
LEU
44
A
SER
45
n
46
SER
45
A
SER
46
n
47
SER
46
A
ILE
47
n
48
ILE
47
A
ALA
48
n
49
ALA
48
A
ILE
49
n
50
ILE
49
A
HIS
50
n
51
HIS
50
A
GLN
51
n
52
GLN
51
A
ALA
52
n
53
ALA
52
A
GLY
53
n
54
GLY
53
A
GLU
54
n
55
GLU
54
A
PHE
55
n
56
PHE
55
A
THR
56
n
57
THR
56
A
GLN
57
n
58
GLN
57
A
PHE
58
n
59
PHE
58
A
ARG
59
n
60
ARG
59
A
PHE
60
n
61
PHE
60
A
SER
61
n
62
SER
61
A
LYS
62
n
63
LYS
62
A
LYS
63
n
64
LYS
63
A
MSE
64
n
65
MSE
64
A
ARG
65
n
66
ARG
65
A
PRO
66
n
67
PRO
66
A
ASP
67
n
68
ASP
67
A
LEU
68
n
69
LEU
68
A
THR
69
n
70
THR
69
A
GLY
70
n
71
GLY
70
A
MSE
71
n
72
MSE
71
A
VAL
72
n
73
VAL
72
A
LEU
73
n
74
LEU
73
A
GLU
74
n
75
GLU
74
A
GLU
75
n
76
GLU
75
A
GLY
76
n
77
GLY
76
A
CYS
77
n
78
CYS
77
A
PRO
78
n
79
PRO
78
A
GLU
79
n
80
GLU
79
A
GLY
80
n
81
GLY
80
A
THR
81
n
82
THR
81
A
VAL
82
n
83
VAL
82
A
CYS
83
n
84
CYS
83
A
SER
84
n
85
SER
84
A
VAL
85
n
86
VAL
85
A
LEU
86
n
87
LEU
86
A
ILE
87
n
88
ILE
87
A
LYS
88
n
89
LYS
88
A
ARG
89
n
90
ARG
89
A
ASP
90
n
91
ASP
90
A
SER
91
n
92
SER
91
A
GLY
92
n
93
GLY
92
A
GLU
93
n
94
GLU
93
A
LEU
94
n
95
LEU
94
A
LEU
95
n
96
LEU
95
A
PRO
96
n
97
PRO
96
A
LEU
97
n
98
LEU
97
A
ALA
98
n
99
ALA
98
A
VAL
99
n
100
VAL
99
A
ARG
100
n
101
ARG
100
A
MSE
101
n
102
MSE
101
A
GLY
102
n
103
GLY
102
A
ALA
103
n
104
ALA
103
A
ILE
104
n
105
ILE
104
A
ALA
105
n
106
ALA
105
A
SER
106
n
107
SER
106
A
MSE
107
n
108
MSE
107
A
ARG
108
n
109
ARG
108
A
ILE
109
n
110
ILE
109
A
GLN
110
n
111
GLN
110
A
GLY
111
n
112
GLY
111
A
ARG
112
n
113
ARG
112
A
LEU
113
n
114
LEU
113
A
VAL
114
n
115
VAL
114
A
HIS
115
n
116
HIS
115
A
GLY
116
n
117
GLY
116
A
GLN
117
n
118
GLN
117
A
SER
118
n
119
SER
118
A
GLY
119
n
120
GLY
119
A
MSE
120
n
121
MSE
120
A
LEU
121
n
122
LEU
121
A
LEU
122
n
123
LEU
122
A
ALA
123
n
124
THR
123
A
n
125
124
A
n
126
125
A
n
127
126
A
n
128
127
A
n
129
128
A
n
130
129
A
n
131
130
A
n
132
131
A
LEU
132
n
133
LEU
132
A
GLY
133
n
134
GLY
133
A
THR
134
n
135
THR
134
A
ILE
135
n
136
ILE
135
A
PRO
136
n
137
PRO
136
A
GLY
137
n
138
GLY
137
A
ASP
138
n
139
ASP
138
A
ALA
139
n
140
CYS
139
A
GLY
140
n
141
GLY
140
A
ALA
141
n
142
ALA
141
A
PRO
142
n
143
PRO
142
A
TYR
143
n
144
TYR
143
A
VAL
144
n
145
VAL
144
A
HIS
145
n
146
HIS
145
A
LYS
146
n
147
LYS
146
A
ARG
147
n
148
ARG
147
A
GLY
148
n
149
GLY
148
A
ASN
149
n
150
ASN
149
A
ASP
150
n
151
ASP
150
A
TRP
151
n
152
TRP
151
A
VAL
152
n
153
VAL
152
A
VAL
153
n
154
VAL
153
A
CYS
154
n
155
CYS
154
A
GLY
155
n
156
GLY
155
A
VAL
156
n
157
VAL
156
A
HIS
157
n
158
HIS
157
A
ALA
158
n
159
ALA
158
A
ALA
159
n
160
ALA
159
A
ALA
160
n
161
ALA
160
A
THR
161
n
162
THR
161
A
LYS
162
n
163
LYS
162
A
SER
163
n
164
SER
163
A
GLY
164
n
165
GLY
164
A
ASN
165
n
166
ASN
165
A
THR
166
n
167
THR
166
A
VAL
167
n
168
VAL
167
A
VAL
168
n
169
VAL
168
A
CYS
169
n
170
CYS
169
A
ALA
170
n
171
ALA
170
A
VAL
171
n
172
VAL
171
A
GLN
172
n
173
GLN
172
A
ALA
173
n
174
ALA
173
A
GLY
174
n
175
GLY
174
A
GLU
175
n
176
GLU
175
A
GLY
176
n
177
GLY
176
A
GLU
177
n
178
GLU
177
A
THR
178
n
179
THR
178
A
ALA
179
n
180
ALA
179
A
LEU
180
n
181
LEU
180
A
n
182
181
A
n
1
0
B
ALA
1
n
2
ALA
1
B
PRO
2
n
3
PRO
2
B
PRO
3
n
4
PRO
3
B
THR
4
n
5
THR
4
B
LEU
5
n
6
LEU
5
B
TRP
6
n
7
TRP
6
B
SER
7
n
8
SER
7
B
ARG
8
n
9
ARG
8
B
VAL
9
n
10
VAL
9
B
THR
10
n
11
THR
10
B
LYS
11
n
12
LYS
11
B
PHE
12
n
13
PHE
12
B
GLY
13
n
14
GLY
13
B
SER
14
n
15
SER
14
B
GLY
15
n
16
GLY
15
B
TRP
16
n
17
TRP
16
B
GLY
17
n
18
GLY
17
B
PHE
18
n
19
PHE
18
B
TRP
19
n
20
TRP
19
B
VAL
20
n
21
VAL
20
B
SER
21
n
22
SER
21
B
PRO
22
n
23
PRO
22
B
THR
23
n
24
THR
23
B
VAL
24
n
25
VAL
24
B
PHE
25
n
26
PHE
25
B
ILE
26
n
27
ILE
26
B
THR
27
n
28
THR
27
B
THR
28
n
29
THR
28
B
THR
29
n
30
THR
29
B
HIS
30
n
31
HIS
30
B
VAL
31
n
32
VAL
31
B
VAL
32
n
33
VAL
32
B
PRO
33
n
34
PRO
33
B
THR
34
n
35
THR
34
B
GLY
35
n
36
GLY
35
B
VAL
36
n
37
VAL
36
B
LYS
37
n
38
LYS
37
B
GLU
38
n
39
GLU
38
B
PHE
39
n
40
PHE
39
B
PHE
40
n
41
PHE
40
B
GLY
41
n
42
GLY
41
B
GLU
42
n
43
GLU
42
B
PRO
43
n
44
PRO
43
B
LEU
44
n
45
LEU
44
B
SER
45
n
46
SER
45
B
SER
46
n
47
SER
46
B
ILE
47
n
48
ILE
47
B
ALA
48
n
49
ALA
48
B
ILE
49
n
50
ILE
49
B
HIS
50
n
51
HIS
50
B
GLN
51
n
52
GLN
51
B
ALA
52
n
53
ALA
52
B
GLY
53
n
54
GLY
53
B
GLU
54
n
55
GLU
54
B
PHE
55
n
56
PHE
55
B
THR
56
n
57
THR
56
B
GLN
57
n
58
GLN
57
B
PHE
58
n
59
PHE
58
B
ARG
59
n
60
ARG
59
B
PHE
60
n
61
PHE
60
B
SER
61
n
62
SER
61
B
LYS
62
n
63
LYS
62
B
LYS
63
n
64
LYS
63
B
MSE
64
n
65
MSE
64
B
ARG
65
n
66
ARG
65
B
PRO
66
n
67
PRO
66
B
ASP
67
n
68
ASP
67
B
LEU
68
n
69
LEU
68
B
THR
69
n
70
THR
69
B
GLY
70
n
71
GLY
70
B
MSE
71
n
72
MSE
71
B
VAL
72
n
73
VAL
72
B
LEU
73
n
74
LEU
73
B
GLU
74
n
75
GLU
74
B
GLU
75
n
76
GLU
75
B
GLY
76
n
77
GLY
76
B
CYS
77
n
78
CYS
77
B
PRO
78
n
79
PRO
78
B
GLU
79
n
80
GLU
79
B
GLY
80
n
81
GLY
80
B
THR
81
n
82
THR
81
B
VAL
82
n
83
VAL
82
B
CYS
83
n
84
CYS
83
B
SER
84
n
85
SER
84
B
VAL
85
n
86
VAL
85
B
LEU
86
n
87
LEU
86
B
ILE
87
n
88
ILE
87
B
LYS
88
n
89
LYS
88
B
ARG
89
n
90
ARG
89
B
ASP
90
n
91
ASP
90
B
SER
91
n
92
SER
91
B
GLY
92
n
93
GLY
92
B
GLU
93
n
94
GLU
93
B
LEU
94
n
95
LEU
94
B
LEU
95
n
96
LEU
95
B
PRO
96
n
97
PRO
96
B
LEU
97
n
98
LEU
97
B
ALA
98
n
99
ALA
98
B
VAL
99
n
100
VAL
99
B
ARG
100
n
101
ARG
100
B
MSE
101
n
102
MSE
101
B
GLY
102
n
103
GLY
102
B
ALA
103
n
104
ALA
103
B
ILE
104
n
105
ILE
104
B
ALA
105
n
106
ALA
105
B
SER
106
n
107
SER
106
B
MSE
107
n
108
MSE
107
B
ARG
108
n
109
ARG
108
B
ILE
109
n
110
ILE
109
B
GLN
110
n
111
GLN
110
B
GLY
111
n
112
GLY
111
B
ARG
112
n
113
ARG
112
B
LEU
113
n
114
LEU
113
B
VAL
114
n
115
VAL
114
B
HIS
115
n
116
HIS
115
B
GLY
116
n
117
GLY
116
B
GLN
117
n
118
GLN
117
B
SER
118
n
119
SER
118
B
GLY
119
n
120
GLY
119
B
MSE
120
n
121
MSE
120
B
LEU
121
n
122
LEU
121
B
LEU
122
n
123
LEU
122
B
n
124
123
B
n
125
124
B
n
126
125
B
n
127
126
B
n
128
127
B
n
129
128
B
n
130
129
B
n
131
130
B
n
132
131
B
n
133
132
B
GLY
133
n
134
GLY
133
B
THR
134
n
135
THR
134
B
ILE
135
n
136
ILE
135
B
PRO
136
n
137
PRO
136
B
GLY
137
n
138
GLY
137
B
ASP
138
n
139
ASP
138
B
ALA
139
n
140
CYS
139
B
GLY
140
n
141
GLY
140
B
ALA
141
n
142
ALA
141
B
PRO
142
n
143
PRO
142
B
TYR
143
n
144
TYR
143
B
VAL
144
n
145
VAL
144
B
HIS
145
n
146
HIS
145
B
LYS
146
n
147
LYS
146
B
ARG
147
n
148
ARG
147
B
GLY
148
n
149
GLY
148
B
ASN
149
n
150
ASN
149
B
ASP
150
n
151
ASP
150
B
TRP
151
n
152
TRP
151
B
VAL
152
n
153
VAL
152
B
VAL
153
n
154
VAL
153
B
CYS
154
n
155
CYS
154
B
GLY
155
n
156
GLY
155
B
VAL
156
n
157
VAL
156
B
HIS
157
n
158
HIS
157
B
ALA
158
n
159
ALA
158
B
ALA
159
n
160
ALA
159
B
ALA
160
n
161
ALA
160
B
THR
161
n
162
THR
161
B
LYS
162
n
163
LYS
162
B
SER
163
n
164
SER
163
B
GLY
164
n
165
GLY
164
B
ASN
165
n
166
ASN
165
B
THR
166
n
167
THR
166
B
VAL
167
n
168
VAL
167
B
VAL
168
n
169
VAL
168
B
CYS
169
n
170
CYS
169
B
ALA
170
n
171
ALA
170
B
VAL
171
n
172
VAL
171
B
GLN
172
n
173
GLN
172
B
ALA
173
n
174
ALA
173
B
GLY
174
n
175
GLY
174
B
GLU
175
n
176
GLU
175
B
GLY
176
n
177
GLY
176
B
GLU
177
n
178
GLU
177
B
THR
178
n
179
THR
178
B
ALA
179
n
180
ALA
179
B
LEU
180
n
181
LEU
180
B
GLU
181
n
182
GLU
181
B
0.9503
0.1941
0.7692
0.7138
-0.0373
0.6837
-0.1313
0.2926
-0.0443
-0.3082
-0.1452
-0.0494
0.0130
0.2378
0.0075
0.3284
0.1387
0.1094
0.3122
-0.0103
0.3129
refined
10.4341
35.0852
21.2071
X-RAY DIFFRACTION
0.1221
-0.0040
-0.2261
0.4454
-0.0984
0.4232
0.1157
0.1117
0.0712
-0.2217
-0.0352
-0.1725
-0.0785
0.2117
-0.0074
0.3220
0.0711
0.0448
0.2756
0.0381
0.2839
refined
8.2965
49.1200
21.2316
X-RAY DIFFRACTION
0.3768
-0.0164
0.4155
0.4221
-0.3744
0.7847
0.3161
0.1425
0.0748
-0.1760
0.0466
0.3194
-0.0755
-0.2568
-0.1264
0.2915
0.0965
0.0255
0.1869
0.0306
0.2461
refined
0.5058
51.7114
21.8089
X-RAY DIFFRACTION
1.8054
-0.5450
0.9707
0.4154
-0.2376
0.5374
-0.2159
0.4643
-0.1362
-0.3327
-0.3067
0.0394
-0.0262
-0.0875
0.0226
0.5571
0.1923
0.0907
0.4698
-0.0430
0.2570
refined
6.0486
43.1194
10.5642
X-RAY DIFFRACTION
0.3967
-0.0732
-0.0227
0.4711
0.0523
0.9242
-0.0291
0.2096
-0.1775
-0.2150
0.0277
-0.0423
0.1802
0.0160
-0.0496
0.4855
0.0485
0.0584
0.4810
-0.0217
0.4230
refined
-4.8128
35.3938
27.0965
X-RAY DIFFRACTION
0.8096
0.0482
-0.2071
0.6807
-0.6229
0.6850
-0.1542
-0.0750
0.0770
0.0564
-0.0951
-0.4461
0.1798
0.3031
-0.1791
0.4699
0.2628
0.1548
0.2306
0.0203
0.3806
refined
12.8727
34.7077
29.6754
X-RAY DIFFRACTION
0.2988
-0.0974
-0.1207
0.2884
0.0220
0.5744
-0.3222
-0.2055
-0.1376
0.4529
0.1696
0.0196
0.1825
-0.0005
0.0427
0.3638
0.1325
0.0773
0.3312
0.0623
0.3315
refined
3.9209
39.7427
37.3498
X-RAY DIFFRACTION
1.3056
-0.4774
-0.1970
0.4206
-0.3187
0.9220
-0.0712
-0.3232
-0.4566
0.3629
0.0295
0.1296
0.9386
-0.1355
-0.0629
0.4421
0.0660
0.0757
0.2493
0.0617
0.3217
refined
2.3647
35.3741
31.6772
X-RAY DIFFRACTION
0.3281
-0.2771
-0.1241
0.6102
0.5105
0.4873
0.1302
0.4449
-0.0111
-0.0505
-0.0026
0.2277
-0.0883
0.0639
-0.0253
0.1892
0.0474
0.0043
0.4535
0.0346
0.4044
refined
-9.9691
46.2720
33.7234
X-RAY DIFFRACTION
0.1313
-0.0205
0.0735
0.0734
0.0828
0.1375
-0.0787
-0.1333
0.0109
0.1462
0.0122
0.1088
-0.2584
-0.0991
-0.0366
0.5876
0.3864
0.1446
0.1118
-0.0312
0.3479
refined
21.9786
31.1276
19.6002
X-RAY DIFFRACTION
0.8733
-0.0538
-0.7665
0.9144
-0.2638
0.8144
0.1096
-0.1824
0.2146
0.0805
0.2373
-0.1710
-1.1654
0.3185
0.1504
0.7920
-0.0258
0.0614
0.1567
-0.0842
0.3265
refined
33.6336
37.4351
20.8073
X-RAY DIFFRACTION
0.6721
-0.0612
-0.3100
1.3955
0.5570
0.3871
0.0178
-0.2193
-0.0114
0.3726
-0.0229
-0.4229
0.0218
0.5565
-0.0655
0.5484
-0.0678
0.0234
0.3828
-0.0716
0.3283
refined
40.1803
33.2725
21.3527
X-RAY DIFFRACTION
0.1970
-0.2164
-0.3514
0.2230
0.3849
0.6322
-0.0520
-0.3156
0.1264
0.2797
0.0462
0.1354
-0.4058
0.1196
-0.4720
0.6660
0.2140
0.1857
0.3593
-0.0902
0.2243
refined
28.6204
30.1157
30.6575
X-RAY DIFFRACTION
0.2472
-0.0667
0.0987
0.6923
0.0313
2.0892
-0.0022
-0.0321
-0.2681
0.1193
-0.0158
0.2746
0.1751
-0.4838
0.0906
0.3347
0.0144
0.0498
0.1818
-0.0718
0.2819
refined
31.7555
19.4499
12.1163
X-RAY DIFFRACTION
2.0030
0.3138
0.0747
0.0688
-0.1051
1.2024
0.1374
0.2781
0.6764
0.0070
-0.0044
0.1170
-0.6863
-0.2394
-0.1181
0.5002
0.1416
0.1502
0.3599
0.0147
0.3750
refined
19.9351
33.0485
10.5745
X-RAY DIFFRACTION
1.4844
-0.1248
-0.3284
0.3546
0.0950
0.4450
0.1682
0.5370
0.1745
-0.1060
-0.0966
-0.0848
-0.4818
-0.0271
-0.1278
0.4344
0.0737
0.0883
0.3307
-0.0452
0.3531
refined
32.2506
28.8516
3.3929
X-RAY DIFFRACTION
1.7440
1.1949
-0.3692
1.7329
0.2174
1.7859
0.0075
0.4955
-0.5349
-0.3497
0.2123
-0.3542
-0.5303
-0.2729
-0.0708
0.4270
0.0639
0.0697
0.3727
-0.0194
0.3254
refined
34.0676
26.8022
1.7548
X-RAY DIFFRACTION
1.1266
1.3243
-0.2455
1.7893
-0.5222
0.3737
0.0317
0.0172
-0.3024
0.4873
-0.0797
-0.3149
-0.4573
-0.1875
-0.1435
0.4317
0.1637
0.0556
0.2389
-0.0161
0.2399
refined
24.9085
27.0861
9.9867
X-RAY DIFFRACTION
0.2892
0.1444
0.1596
0.6468
0.1119
0.4413
0.0339
0.0163
0.0220
-0.2628
0.0347
0.1384
-0.1172
0.1534
-0.0132
0.4344
0.0670
0.0380
0.2065
-0.0090
0.2402
refined
33.5201
25.3684
4.9806
X-RAY DIFFRACTION
A
0
A
12
X-RAY DIFFRACTION
1
( CHAIN A AND RESID 0:12 )
A
13
A
43
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 13:43 )
A
44
A
59
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 44:59 )
A
60
A
69
X-RAY DIFFRACTION
4
( CHAIN A AND RESID 60:69 )
A
70
A
81
X-RAY DIFFRACTION
5
( CHAIN A AND RESID 70:81 )
A
82
A
93
X-RAY DIFFRACTION
6
( CHAIN A AND RESID 82:93 )
A
94
A
141
X-RAY DIFFRACTION
7
( CHAIN A AND RESID 94:141 )
A
142
A
170
X-RAY DIFFRACTION
8
( CHAIN A AND RESID 142:170 )
A
171
A
179
X-RAY DIFFRACTION
9
( CHAIN A AND RESID 171:179 )
B
1
B
12
X-RAY DIFFRACTION
10
( CHAIN B AND RESID 1:12 )
B
13
B
43
X-RAY DIFFRACTION
11
( CHAIN B AND RESID 13:43 )
B
44
B
60
X-RAY DIFFRACTION
12
( CHAIN B AND RESID 44:60 )
B
61
B
70
X-RAY DIFFRACTION
13
( CHAIN B AND RESID 61:70 )
B
71
B
81
X-RAY DIFFRACTION
14
( CHAIN B AND RESID 71:81 )
B
82
B
93
X-RAY DIFFRACTION
15
( CHAIN B AND RESID 82:93 )
B
94
B
112
X-RAY DIFFRACTION
16
( CHAIN B AND RESID 94:112 )
B
113
B
121
X-RAY DIFFRACTION
17
( CHAIN B AND RESID 113:121 )
B
122
B
149
X-RAY DIFFRACTION
18
( CHAIN B AND RESID 122:149 )
B
150
B
181
X-RAY DIFFRACTION
19
( CHAIN B AND RESID 150:181 )
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
2
dimeric
1640
-11
15060
A
MSE
64
SELENOMETHIONINE
A
MSE
65
MET
A
MSE
71
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
101
SELENOMETHIONINE
A
MSE
102
MET
A
MSE
107
SELENOMETHIONINE
A
MSE
108
MET
A
MSE
120
SELENOMETHIONINE
A
MSE
121
MET
B
MSE
64
SELENOMETHIONINE
B
MSE
65
MET
B
MSE
71
SELENOMETHIONINE
B
MSE
72
MET
B
MSE
101
SELENOMETHIONINE
B
MSE
102
MET
B
MSE
107
SELENOMETHIONINE
B
MSE
108
MET
B
MSE
120
SELENOMETHIONINE
B
MSE
121
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
x-y,x,z+1/6
crystal symmetry operation
0.0000000000
0.0000000000
45.0763333333
A
N
THR
10
A
N
THR
11
A
O
GLY
17
A
O
GLY
18
A
N
PHE
18
A
N
PHE
19
A
O
ILE
26
A
O
ILE
27
A
N
PHE
25
A
N
PHE
26
A
O
PHE
58
A
O
PHE
59
A
O
ARG
59
A
O
ARG
60
A
N
ALA
48
A
N
ALA
49
A
N
PHE
39
A
N
PHE
40
A
O
GLU
42
A
O
GLU
43
A
N
CYS
83
A
N
CYS
84
A
O
VAL
99
A
O
VAL
100
A
N
MSE
107
A
N
MSE
108
A
O
VAL
114
A
O
VAL
115
A
N
GLY
119
A
N
GLY
120
A
O
VAL
167
A
O
VAL
168
A
O
ALA
170
A
O
ALA
171
A
N
VAL
156
A
N
VAL
157
A
O
CYS
154
A
O
CYS
155
A
N
TYR
143
A
N
TYR
144
A
O
VAL
144
A
O
VAL
145
A
N
SER
84
A
N
SER
85
B
N
THR
10
B
N
THR
11
B
O
GLY
17
B
O
GLY
18
B
N
PHE
18
B
N
PHE
19
B
O
ILE
26
B
O
ILE
27
B
N
PHE
25
B
N
PHE
26
B
O
PHE
58
B
O
PHE
59
B
O
ARG
59
B
O
ARG
60
B
N
ALA
48
B
N
ALA
49
B
N
PHE
39
B
N
PHE
40
B
O
GLU
42
B
O
GLU
43
B
N
VAL
72
B
N
VAL
73
B
O
VAL
153
B
O
VAL
154
B
N
ALA
159
B
N
ALA
160
B
O
VAL
168
B
O
VAL
169
B
O
VAL
167
B
O
VAL
168
B
N
GLY
119
B
N
GLY
120
B
O
GLY
116
B
O
GLY
117
B
N
ALA
105
B
N
ALA
106
B
O
LEU
95
B
O
LEU
96
B
N
ILE
87
B
N
ILE
88
B
N
SER
84
B
N
SER
85
B
O
VAL
144
B
O
VAL
145
B
N
ARG
147
B
N
ARG
148
B
O
ASP
150
B
O
ASP
151
1
A
OG1
THR
123
A
OG1
THR
124
1
Y
1
A
CG2
THR
123
A
CG2
THR
124
1
Y
1
A
SG
CYS
139
A
SG
CYS
140
1
Y
1
B
SG
CYS
139
B
SG
CYS
140
1
Y
1
A
GLY
124
A
GLY
125
1
Y
1
A
ALA
125
A
ALA
126
1
Y
1
A
ASN
126
A
ASN
127
1
Y
1
A
ALA
127
A
ALA
128
1
Y
1
A
LYS
128
A
LYS
129
1
Y
1
A
GLY
129
A
GLY
130
1
Y
1
A
MSE
130
A
MSE
131
1
Y
1
A
ASP
131
A
ASP
132
1
Y
1
A
GLU
181
A
GLU
182
1
Y
1
B
GLU
0
B
GLU
1
1
Y
1
B
THR
123
B
THR
124
1
Y
1
B
GLY
124
B
GLY
125
1
Y
1
B
ALA
125
B
ALA
126
1
Y
1
B
ASN
126
B
ASN
127
1
Y
1
B
ALA
127
B
ALA
128
1
Y
1
B
LYS
128
B
LYS
129
1
Y
1
B
GLY
129
B
GLY
130
1
Y
1
B
MSE
130
B
MSE
131
1
Y
1
B
ASP
131
B
ASP
132
1
Y
1
B
LEU
132
B
LEU
133
1
Y
1
A
A
O
O
HOH
HOH
252
254
1.93
1
A
A
O
O
HOH
HOH
241
256
2.04
1
A
A
O
O
HOH
HOH
215
261
2.09
1
A
A
O
O
HOH
HOH
248
252
2.13
1
A
A
O
O
HOH
HOH
225
249
2.15
1
A
A
O
O
HOH
HOH
262
266
2.18
1
B
B
O
O
HOH
HOH
236
238
2.19
1
A
GLU
54
73.21
-2.16
1
A
SER
163
-47.74
-4.37
1
A
GLN
172
-105.67
79.79
1
A
GLU
175
-72.07
47.86
1
B
PHE
40
49.76
27.02
6.8227
-0.0000
-0.0000
6.8227
-0.0000
-13.6454
0.2137
0.1879
0.1892
2.401
48.791
1490
30866
29836
4.99
97.11
0.25
1
0.00
MOLECULAR REPLACEMENT
21.90
0.72
1.00
ML
FLAT BULK SOLVENT MODEL
37.423
0.365
2.401
48.791
130
2692
0
0
2562
0.007
2624
1.074
3558
14.851
927
0.071
403
0.005
455
0.2617
0.2247
2.4790
112
2427
93.00
0.2838
0.2292
2.5676
120
2407
93.00
0.2739
0.2178
2.6704
125
2424
94.00
0.2576
0.2122
2.7919
136
2513
96.00
0.2574
0.1989
2.9391
144
2519
97.00
0.2313
0.1982
3.1232
146
2559
98.00
0.2396
0.1877
3.3642
139
2603
99.00
0.1957
0.1629
3.7027
133
2613
99.00
0.1701
0.1524
4.2382
152
2661
99.00
0.1531
0.1433
5.3387
141
2705
100.00
0.2460
0.2438
48.8010
142
2915
100.00
2.4
50
4IN2
30866
30866
2.0
2.0
1
99.9
2.4
2.44
1
100
data collection
HKL-3000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.7_650)
data reduction
HKL-2000
data scaling
HKL-2000
Genome polyprotein (E.C.3.6.1.15, 3.4.22.66, 2.7.7.48)
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
1
N
N
1
N
N
2
N
N
2
N
N
A
PRO
2
A
PRO
3
HELX_P
A
ARG
8
A
ARG
9
1
1
7
A
HIS
30
A
HIS
31
HELX_P
A
VAL
32
A
VAL
33
5
2
3
A
SER
45
A
SER
46
HELX_P
A
ILE
47
A
ILE
48
5
3
3
B
PRO
2
B
PRO
3
HELX_P
B
ARG
8
B
ARG
9
1
4
7
B
HIS
30
B
HIS
31
HELX_P
B
VAL
32
B
VAL
33
5
5
3
B
ILE
135
B
ILE
136
HELX_P
B
CYS
139
B
CYS
140
5
6
5
disulf
2.065
A
CYS
77
A
SG
CYS
78
1_555
A
CYS
154
A
SG
CYS
155
1_555
disulf
2.089
B
CYS
77
B
SG
CYS
78
1_555
B
CYS
154
B
SG
CYS
155
1_555
covale
1.329
A
LYS
63
A
C
LYS
64
1_555
A
MSE
64
A
N
MSE
65
1_555
covale
1.328
A
MSE
64
A
C
MSE
65
1_555
A
ARG
65
A
N
ARG
66
1_555
covale
1.326
A
GLY
70
A
C
GLY
71
1_555
A
MSE
71
A
N
MSE
72
1_555
covale
1.324
A
MSE
71
A
C
MSE
72
1_555
A
VAL
72
A
N
VAL
73
1_555
covale
1.328
A
ARG
100
A
C
ARG
101
1_555
A
MSE
101
A
N
MSE
102
1_555
covale
1.327
A
MSE
101
A
C
MSE
102
1_555
A
GLY
102
A
N
GLY
103
1_555
covale
1.326
A
SER
106
A
C
SER
107
1_555
A
MSE
107
A
N
MSE
108
1_555
covale
1.321
A
MSE
107
A
C
MSE
108
1_555
A
ARG
108
A
N
ARG
109
1_555
covale
1.325
A
GLY
119
A
C
GLY
120
1_555
A
MSE
120
A
N
MSE
121
1_555
covale
1.326
A
MSE
120
A
C
MSE
121
1_555
A
LEU
121
A
N
LEU
122
1_555
covale
1.331
B
LYS
63
B
C
LYS
64
1_555
B
MSE
64
B
N
MSE
65
1_555
covale
1.327
B
MSE
64
B
C
MSE
65
1_555
B
ARG
65
B
N
ARG
66
1_555
covale
1.320
B
GLY
70
B
C
GLY
71
1_555
B
MSE
71
B
N
MSE
72
1_555
covale
1.325
B
MSE
71
B
C
MSE
72
1_555
B
VAL
72
B
N
VAL
73
1_555
covale
1.325
B
ARG
100
B
C
ARG
101
1_555
B
MSE
101
B
N
MSE
102
1_555
covale
1.329
B
MSE
101
B
C
MSE
102
1_555
B
GLY
102
B
N
GLY
103
1_555
covale
1.320
B
SER
106
B
C
SER
107
1_555
B
MSE
107
B
N
MSE
108
1_555
covale
1.324
B
MSE
107
B
C
MSE
108
1_555
B
ARG
108
B
N
ARG
109
1_555
covale
1.324
B
GLY
119
B
C
GLY
120
1_555
B
MSE
120
B
N
MSE
121
1_555
covale
1.329
B
MSE
120
B
C
MSE
121
1_555
B
LEU
121
B
N
LEU
122
1_555
HYDROLASE
protease, Hydrolase
POLG_NVN68
UNP
1
1100
Q83883
EAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEEGCPE
GTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAA
ATKSGNTVVCAVQAGEGETALE
1100
1281
4IN2
0
181
Q83883
A
1
1
182
1100
1281
4IN2
0
181
Q83883
B
1
1
182
5
2
7
5
2
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
9
A
VAL
10
A
PHE
12
A
PHE
13
A
GLY
15
A
GLY
16
A
TRP
19
A
TRP
20
A
VAL
24
A
VAL
25
A
THR
28
A
THR
29
A
PHE
55
A
PHE
56
A
ARG
59
A
ARG
60
A
ALA
48
A
ALA
49
A
ALA
52
A
ALA
53
A
GLU
38
A
GLU
39
A
PHE
39
A
PHE
40
A
GLU
42
A
GLU
43
A
PRO
43
A
PRO
44
A
VAL
82
A
VAL
83
A
LYS
88
A
LYS
89
A
LEU
94
A
LEU
95
A
ILE
109
A
ILE
110
A
ARG
112
A
ARG
113
A
LEU
121
A
LEU
122
A
THR
166
A
THR
167
A
ALA
170
A
ALA
171
A
ASP
150
A
ASP
151
A
ALA
160
A
ALA
161
A
PRO
142
A
PRO
143
A
ARG
147
A
ARG
148
A
VAL
82
A
VAL
83
A
LYS
88
A
LYS
89
B
VAL
9
B
VAL
10
B
PHE
12
B
PHE
13
B
GLY
15
B
GLY
16
B
TRP
19
B
TRP
20
B
VAL
24
B
VAL
25
B
THR
28
B
THR
29
B
PHE
55
B
PHE
56
B
PHE
60
B
PHE
61
B
ILE
47
B
ILE
48
B
ALA
52
B
ALA
53
B
GLU
38
B
GLU
39
B
PHE
39
B
PHE
40
B
GLU
42
B
GLU
43
B
PRO
43
B
PRO
44
B
VAL
72
B
VAL
73
B
LEU
73
B
LEU
74
B
ASP
150
B
ASP
151
B
ALA
160
B
ALA
161
B
THR
166
B
THR
167
B
ALA
170
B
ALA
171
B
ARG
112
B
ARG
113
B
LEU
121
B
LEU
122
B
LEU
94
B
LEU
95
B
ILE
109
B
ILE
110
B
VAL
82
B
VAL
83
B
LYS
88
B
LYS
89
B
PRO
142
B
PRO
143
B
ARG
147
B
ARG
148
B
ASP
150
B
ASP
151
B
ALA
160
B
ALA
161
178
P 61 2 2