0.014214 0.008207 0.000000 0.000000 0.016413 0.000000 0.000000 0.000000 0.009358 0.00000 0.00000 0.00000 Giardina, G. Cutruzzola, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 70.351 70.351 106.866 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H10 O 74.122 TERTIARY-BUTYL ALCOHOL 2-METHYL-2-PROPANOL non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N C N 303 N C N 304 N C N 305 N C N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 R C N 321 N O N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C N 362 N C N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N sing Y 335 N doub N 336 N sing Y 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing US Plos One 1932-6203 8 e81324 e81324 10.1371/journal.pone.0081324 24278422 Investigating the Allosteric Regulation of YfiN from Pseudomonas aeruginosa: Clues from the Structure of the Catalytic Domain. 2013 10.2210/pdb4iob/pdb pdb_00004iob 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-05-18 ADSC QUANTUM 210 Diamond (111), Ge(220) SINGLE WAVELENGTH M x-ray 1 0.933 1.0 ID14-1 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID14-1 17540.955 Diguanylate cyclase TpbB 2.7.7.65 Diguanylate cyclase (GGDEF) domain, UNP residues 254-414 1 man polymer 74.122 TERTIARY-BUTYL ALCOHOL 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer no no LTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFA VLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAEL N LTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFA VLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAEL N A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n PAO1 sample PA1120, tpbB 208964 Pseudomonas aeruginosa 469008 Escherichia coli BL21(DE3) plasmid pET24b 1 2.18 43.48 VAPOR DIFFUSION, SITTING DROP 5.6 300nl+300nl of 3.7 mg/ml protein solution (100 mM NaCl, 10 mM Tris pH=8.0, 2% glycerol) and 0.1 M Sodium Citrate dehydrate pH 5.6, 35% v/v tert-butanol., VAPOR DIFFUSION, SITTING DROP, temperature 294K 294 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Database references Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-12-04 1 1 2014-01-08 1 2 2017-11-15 1 3 2023-09-20 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-01-07 REL REL TBU TERTIARY-BUTYL ALCOHOL GOL GLYCEROL 2WB4 PDB ENTRY 2WB4 PDB experimental model TBU 1 2 TBU TBU 501 A GOL 1 3 GOL GOL 502 A LEU 254 n 1 LEU 254 A THR 255 n 2 THR 255 A SER 256 n 3 SER 256 A LEU 257 n 4 LEU 257 A PRO 258 n 5 PRO 258 A ASN 259 n 6 ASN 259 A ARG 260 n 7 ARG 260 A ALA 261 n 8 ALA 261 A PHE 262 n 9 PHE 262 A PHE 263 n 10 PHE 263 A GLU 264 n 11 GLU 264 A GLY 265 n 12 GLY 265 A ARG 266 n 13 ARG 266 A LEU 267 n 14 LEU 267 A SER 268 n 15 SER 268 A ARG 269 n 16 ARG 269 A ALA 270 n 17 ALA 270 A LEU 271 n 18 LEU 271 A ARG 272 n 19 ARG 272 A ASP 273 n 20 ASP 273 A ALA 274 n 21 ALA 274 A ASN 275 n 22 ASN 275 A GLU 276 n 23 GLU 276 A HIS 277 n 24 HIS 277 A ARG 278 n 25 ARG 278 A GLU 279 n 26 GLU 279 A GLN 280 n 27 GLN 280 A LEU 281 n 28 LEU 281 A ALA 282 n 29 ALA 282 A VAL 283 n 30 VAL 283 A LEU 284 n 31 LEU 284 A PHE 285 n 32 PHE 285 A ILE 286 n 33 ILE 286 A ASP 287 n 34 ASP 287 A SER 288 n 35 SER 288 A ASP 289 n 36 ASP 289 A ARG 290 n 37 ARG 290 A PHE 291 n 38 PHE 291 A LYS 292 n 39 LYS 292 A GLU 293 n 40 GLU 293 A ILE 294 n 41 ILE 294 A ASN 295 n 42 ASN 295 A ASP 296 n 43 ASP 296 A ARG 297 n 44 ARG 297 A LEU 298 n 45 LEU 298 A GLY 299 n 46 GLY 299 A HIS 300 n 47 HIS 300 A ALA 301 n 48 ALA 301 A ALA 302 n 49 ALA 302 A GLY 303 n 50 GLY 303 A ASP 304 n 51 ASP 304 A THR 305 n 52 THR 305 A VAL 306 n 53 VAL 306 A LEU 307 n 54 LEU 307 A VAL 308 n 55 VAL 308 A ASN 309 n 56 ASN 309 A ILE 310 n 57 ILE 310 A ALA 311 n 58 ALA 311 A MET 312 n 59 MET 312 A ARG 313 n 60 ARG 313 A ILE 314 n 61 ILE 314 A ARG 315 n 62 ARG 315 A GLY 316 n 63 GLY 316 A GLN 317 n 64 GLN 317 A LEU 318 n 65 LEU 318 A ARG 319 n 66 ARG 319 A GLU 320 n 67 GLU 320 A SER 321 n 68 SER 321 A ASP 322 n 69 ASP 322 A LEU 323 n 70 LEU 323 A VAL 324 n 71 VAL 324 A ALA 325 n 72 ALA 325 A ARG 326 n 73 ARG 326 A LEU 327 n 74 LEU 327 A GLY 328 n 75 GLY 328 A GLY 329 n 76 GLY 329 A ASP 330 n 77 ASP 330 A GLU 331 n 78 GLU 331 A PHE 332 n 79 PHE 332 A ALA 333 n 80 ALA 333 A VAL 334 n 81 VAL 334 A LEU 335 n 82 LEU 335 A LEU 336 n 83 LEU 336 A ALA 337 n 84 ALA 337 A PRO 338 n 85 PRO 338 A LEU 339 n 86 LEU 339 A ALA 340 n 87 ALA 340 A SER 341 n 88 SER 341 A GLY 342 n 89 GLY 342 A ALA 343 n 90 ALA 343 A ASP 344 n 91 ASP 344 A ALA 345 n 92 ALA 345 A LEU 346 n 93 LEU 346 A ARG 347 n 94 ARG 347 A ILE 348 n 95 ILE 348 A ALA 349 n 96 ALA 349 A ASP 350 n 97 ASP 350 A ASN 351 n 98 ASN 351 A ILE 352 n 99 ILE 352 A ILE 353 n 100 ILE 353 A ALA 354 n 101 ALA 354 A SER 355 n 102 SER 355 A MET 356 n 103 MET 356 A GLN 357 n 104 GLN 357 A ALA 358 n 105 ALA 358 A PRO 359 n 106 PRO 359 A ILE 360 n 107 ILE 360 A ARG 361 n 108 ARG 361 A LEU 362 n 109 LEU 362 A SER 363 n 110 SER 363 A ASP 364 n 111 ASP 364 A GLY 365 n 112 GLY 365 A SER 366 n 113 SER 366 A THR 367 n 114 THR 367 A VAL 368 n 115 VAL 368 A SER 369 n 116 SER 369 A THR 370 n 117 THR 370 A SER 371 n 118 SER 371 A LEU 372 n 119 LEU 372 A THR 373 n 120 THR 373 A ILE 374 n 121 ILE 374 A GLY 375 n 122 GLY 375 A ILE 376 n 123 ILE 376 A ALA 377 n 124 ALA 377 A LEU 378 n 125 LEU 378 A TYR 379 n 126 TYR 379 A PRO 380 n 127 PRO 380 A GLU 381 n 128 GLU 381 A HIS 382 n 129 HIS 382 A ALA 383 n 130 ALA 383 A ASP 384 n 131 ASP 384 A THR 385 n 132 THR 385 A PRO 386 n 133 PRO 386 A ALA 387 n 134 ALA 387 A ALA 388 n 135 ALA 388 A LEU 389 n 136 LEU 389 A LEU 390 n 137 LEU 390 A HIS 391 n 138 HIS 391 A ASP 392 n 139 ASP 392 A ALA 393 n 140 ALA 393 A ASP 394 n 141 ASP 394 A MET 395 n 142 MET 395 A ALA 396 n 143 ALA 396 A MET 397 n 144 MET 397 A TYR 398 n 145 TYR 398 A ILE 399 n 146 ILE 399 A ALA 400 n 147 ALA 400 A LYS 401 n 148 LYS 401 A ARG 402 n 149 ARG 402 A GLN 403 n 150 GLN 403 A ALA 404 n 151 ALA 404 A ARG 405 n 152 ARG 405 A GLY 406 n 153 GLY 406 A SER 407 n 154 SER 407 A ARG 408 n 155 ARG 408 A ARG 409 n 156 ARG 409 A LEU 410 n 157 LEU 410 A ALA 411 n 158 ALA 411 A GLU 412 n 159 GLU 412 A LEU 413 n 160 LEU 413 A ASN 414 n 161 ASN 414 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 325 A N ALA 72 A O ALA 333 A O ALA 80 A O LEU 339 A O LEU 86 A N GLN 280 A N GLN 27 A N ASP 287 A N ASP 34 A O THR 373 A O THR 120 A N ILE 376 A N ILE 123 A O ARG 409 A O ARG 156 A N ILE 360 A N ILE 107 A O VAL 368 A O VAL 115 1 A A O O ALA HIS 274 277 1.92 1 A A O O ALA ALA 400 404 1.97 1 A A CZ CD2 PHE LEU 263 335 2.15 1 A A OD2 OH ASP TYR 350 398 2.15 1_555 5_555 1 A GLU 320 -49.58 -16.42 1 A LEU 413 -39.27 123.49 48.086 -2.11 -1.06 0.00 -2.11 0.00 3.17 0.889 0.888 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.27978 0.27833 0.27841 2.78 40 217 4095 5.0 99.70 16.717 0.335 RANDOM 1 Isotropic MOLECULAR REPLACEMENT 0.436 0.80 0.80 1.20 PDB ENTRY 2WB4 MAXIMUM LIKELIHOOD MASK 2.78 40 0 1241 11 0 1230 0.001 0.019 1260 0.460 1.981 1703 3.002 5.000 162 22.269 22.500 60 15.058 15.000 215 11.077 15.000 17 0.031 0.200 199 0.001 0.021 952 0.378 0.343 2.849 13 230 20 95.67 57.9 2.78 40 4IOB 4359 4343 3 3 0.095 0.083 1 31.11 13.7 99.6 0.607 2.78 2.94 3.3 666 0.685 1 9.77 data collection MAR345 phasing MOLREP refinement REFMAC 5.6.0117 data reduction XDS data scaling XSCALE Crystal structure of the GGDEF domain of PA1120 (YfiN or TpbB) from Pseudomonas aeruginosa at 2.7 Ang. 1 N N 2 N N 3 N N A ASN 259 A ASN 6 HELX_P A HIS 277 A HIS 24 1 1 19 A ARG 290 A ARG 37 HELX_P A GLY 299 A GLY 46 1 2 10 A GLY 299 A GLY 46 HELX_P A GLY 316 A GLY 63 1 3 18 A SER 341 A SER 88 HELX_P A MET 356 A MET 103 1 4 16 A THR 385 A THR 132 HELX_P A ALA 404 A ALA 151 1 5 20 LYASE TpbB, YfiN, ggdef, DGC, PF00990, Diguanylate cyclase, GTP, c-di-GMP, cGpGp, cytosolic portion of a membrane protein, LYASE A ALA 337 A ALA 84 1 A PRO 338 A PRO 85 -1.06 A TYR 379 A TYR 126 1 A PRO 380 A PRO 127 1.95 Q9I4L5_PSEAE UNP 1 254 Q9I4L5 LTSLPNRAFFEGRLSRALRDANEHREQLAVLFIDSDRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFA VLLAPLASGADALRIADNIIASMQAPIRLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAEL N 254 414 4IOB 254 414 Q9I4L5 A 1 1 161 5 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel A LEU 323 A LEU 70 A GLY 328 A GLY 75 A GLU 331 A GLU 78 A LEU 339 A LEU 86 A GLN 280 A GLN 27 A SER 288 A SER 35 A LEU 372 A LEU 119 A TYR 379 A TYR 126 A ARG 408 A ARG 155 A LEU 410 A LEU 157 A ILE 360 A ILE 107 A ARG 361 A ARG 108 A THR 367 A THR 114 A VAL 368 A VAL 115 BINDING SITE FOR RESIDUE TBU A 501 A TBU 501 Software 4 BINDING SITE FOR RESIDUE GOL A 502 A GOL 502 Software 6 A ARG 266 A ARG 13 4 8_545 A ARG 269 A ARG 16 4 8_545 A GLY 299 A GLY 46 4 1_555 A HIS 300 A HIS 47 4 1_555 A ARG 290 A ARG 37 6 1_555 A PHE 291 A PHE 38 6 1_555 A LYS 292 A LYS 39 6 1_555 A ASP 330 A ASP 77 6 1_555 A ARG 347 A ARG 94 6 6_554 A LYS 401 A LYS 148 6 1_555 179 P 65 2 2