0.013398
0.000000
0.000000
0.000000
0.013398
0.000000
0.000000
0.000000
0.003689
0.00000
0.00000
0.00000
Li, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
74.640
74.640
271.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
11505
11510
10.1073/pnas.1303300110
23803857
Structure of NKp65 bound to its keratinocyte ligand reveals basis for genetically linked recognition in natural killer gene complex.
2013
100
1
MIRRORS
CCD
SIEMENS-NICOLET
GRAPHITE
SINGLE WAVELENGTH
x-ray
1
1.502
1.0
134121
0.102
0.93
3.350
50.000
5909
99.70
22.70
X29A
NSLS
1.502
SYNCHROTRON
NSLS BEAMLINE X29A
16239.239
C-type lectin domain family 2 member A
1
man
polymer
17967.986
Killer cell lectin-like receptor subfamily F member 2
1
man
polymer
586.542
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
Keratinocyte-associated C-type lectin, KACL, Proliferation-induced lymphocyte-associated receptor, PILAR
Lectin-like receptor F2, Activating coreceptor NKp65
no
no
DLGSIATWSKHAKPVACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQEDMEFLKRYAGTDMHWIGLSRK
QGDSWKWTNGTTFNGWFEIIGNGSFAFLSADGVHSSRGFIDIKWICSKPKYFLAAAHHHHHH
DLGSIATWSKHAKPVACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQEDMEFLKRYAGTDMHWIGLSRK
QGDSWKWTNGTTFNGWFEIIGNGSFAFLSADGVHSSRGFIDIKWICSKPKYFLAAAHHHHHH
A
polypeptide(L)
no
no
DLGSSQNVNVSSLSGHNYLCPNDWLLNEGKCYWFSTSFKTWKESQRDCTQLQAHLLVIQNLDELEFIQNSLKPGHFGWIG
LYVTFQGNLWMWIDEHFLVPELFSVIGPTDDRSCAVITGNWVYSEDCSSTFKGICQRDAILTHNGTSGVAAAHHHHHH
DLGSSQNVNVSSLSGHNYLCPNDWLLNEGKCYWFSTSFKTWKESQRDCTQLQAHLLVIQNLDELEFIQNSLKPGHFGWIG
LYVTFQGNLWMWIDEHFLVPELFSVIGPTDDRSCAVITGNWVYSEDCSSTFKGICQRDAILTHNGTSGVAAAHHHHHH
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
fall armyworm
sample
CLEC2A, KACL, UNQ5792/PRO19597
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
Baculovirus
plasmid
pAcGP67-B
human
fall armyworm
sample
KLRF2
9606
Homo sapiens
SF9
7108
Spodoptera frugiperda
Baculovirus
plasmid
pAcGP67-B
1
2.76
55.42
6.0
PEG 1000, NaCl, pH 6.0, temperature 298K, VAPOR DIFFUSION, HANGING DROP
298
reflns_shell
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Database references
Data collection
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
2013-07-17
1
1
2013-07-24
1
2
2017-10-11
2
0
2020-07-29
_reflns_shell.percent_possible_all
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
A
NAG
800
n
C
NAG
1
A
NAG
801
n
C
NAG
2
A
MAN
802
n
C
MAN
3
A
NAG
900
n
D
NAG
1
A
NAG
901
n
D
NAG
2
A
MAN
902
n
D
MAN
3
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2013-01-08
REL
REL
0.031
1.013
100
98.80
20.60
0.061
0.907
162
100.00
21.50
0.080
0.886
191
100.00
22.10
0.089
0.902
232
100.00
22.70
0.129
0.958
248
100.00
22.90
0.187
0.919
272
99.80
23.30
0.265
0.915
296
99.80
23.40
0.427
0.928
310
99.70
23.60
0.615
0.923
336
99.70
23.50
0.877
0.916
350
99.80
23.80
oligosaccharide
DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{}}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
MAN
NAG
3
2
3
O1
HO4
sing
n
n
n
3.400
3.400
49.170
49.170
Phaser MODE: MR_AUTO
n
1
42
A
n
2
43
A
n
3
44
A
n
4
45
A
n
5
46
A
n
6
47
A
n
7
48
A
n
8
49
A
n
9
50
A
n
10
51
A
n
11
52
A
n
12
53
A
n
13
54
A
n
14
55
A
GLY
56
n
15
VAL
56
A
GLY
57
n
16
ALA
57
A
CYS
58
n
17
CYS
58
A
SER
59
n
18
SER
59
A
GLY
60
n
19
GLY
60
A
ASP
61
n
20
ASP
61
A
TRP
62
n
21
TRP
62
A
LEU
63
n
22
LEU
63
A
GLY
64
n
23
GLY
64
A
VAL
65
n
24
VAL
65
A
ARG
66
n
25
ARG
66
A
ASP
67
n
26
ASP
67
A
LYS
68
n
27
LYS
68
A
CYS
69
n
28
CYS
69
A
PHE
70
n
29
PHE
70
A
TYR
71
n
30
TYR
71
A
PHE
72
n
31
PHE
72
A
SER
73
n
32
SER
73
A
ASP
74
n
33
ASP
74
A
ASP
75
n
34
ASP
75
A
THR
76
n
35
THR
76
A
ARG
77
n
36
ARG
77
A
ASN
78
n
37
ASN
78
A
TRP
79
n
38
TRP
79
A
THR
80
n
39
THR
80
A
ALA
81
n
40
ALA
81
A
SER
82
n
41
SER
82
A
LYS
83
n
42
LYS
83
A
ILE
84
n
43
ILE
84
A
PHE
85
n
44
PHE
85
A
CYS
86
n
45
CYS
86
A
SER
87
n
46
SER
87
A
LEU
88
n
47
LEU
88
A
GLN
89
n
48
GLN
89
A
LYS
90
n
49
LYS
90
A
ALA
91
n
50
ALA
91
A
ALA
92
n
51
GLU
92
A
LEU
93
n
52
LEU
93
A
ALA
94
n
53
ALA
94
A
GLN
95
n
54
GLN
95
A
ILE
96
n
55
ILE
96
A
ASP
97
n
56
ASP
97
A
THR
98
n
57
THR
98
A
GLN
99
n
58
GLN
99
A
ALA
100
n
59
GLU
100
A
ASP
101
n
60
ASP
101
A
MET
102
n
61
MET
102
A
GLU
103
n
62
GLU
103
A
PHE
104
n
63
PHE
104
A
LEU
105
n
64
LEU
105
A
LYS
106
n
65
LYS
106
A
ARG
107
n
66
ARG
107
A
TYR
108
n
67
TYR
108
A
ALA
109
n
68
ALA
109
A
GLY
110
n
69
GLY
110
A
THR
111
n
70
THR
111
A
ASP
112
n
71
ASP
112
A
MET
113
n
72
MET
113
A
HIS
114
n
73
HIS
114
A
TRP
115
n
74
TRP
115
A
ILE
116
n
75
ILE
116
A
GLY
117
n
76
GLY
117
A
LEU
118
n
77
LEU
118
A
SER
119
n
78
SER
119
A
ARG
120
n
79
ARG
120
A
ALA
121
n
80
LYS
121
A
GLN
122
n
81
GLN
122
A
GLY
123
n
82
GLY
123
A
ASP
124
n
83
ASP
124
A
SER
125
n
84
SER
125
A
TRP
126
n
85
TRP
126
A
ALA
127
n
86
LYS
127
A
TRP
128
n
87
TRP
128
A
THR
129
n
88
THR
129
A
ASN
130
n
89
ASN
130
A
GLY
131
n
90
GLY
131
A
THR
132
n
91
THR
132
A
THR
133
n
92
THR
133
A
PHE
134
n
93
PHE
134
A
ASN
135
n
94
ASN
135
A
GLY
136
n
95
GLY
136
A
TRP
137
n
96
TRP
137
A
PHE
138
n
97
PHE
138
A
GLU
139
n
98
GLU
139
A
ILE
140
n
99
ILE
140
A
ILE
141
n
100
ILE
141
A
GLY
142
n
101
GLY
142
A
ASN
143
n
102
ASN
143
A
GLY
144
n
103
GLY
144
A
SER
145
n
104
SER
145
A
PHE
146
n
105
PHE
146
A
ALA
147
n
106
ALA
147
A
PHE
148
n
107
PHE
148
A
LEU
149
n
108
LEU
149
A
SER
150
n
109
SER
150
A
ALA
151
n
110
ALA
151
A
ASP
152
n
111
ASP
152
A
GLY
153
n
112
GLY
153
A
VAL
154
n
113
VAL
154
A
HIS
155
n
114
HIS
155
A
SER
156
n
115
SER
156
A
SER
157
n
116
SER
157
A
ARG
158
n
117
ARG
158
A
GLY
159
n
118
GLY
159
A
PHE
160
n
119
PHE
160
A
ILE
161
n
120
ILE
161
A
ASP
162
n
121
ASP
162
A
ILE
163
n
122
ILE
163
A
LYS
164
n
123
LYS
164
A
TRP
165
n
124
TRP
165
A
ILE
166
n
125
ILE
166
A
CYS
167
n
126
CYS
167
A
SER
168
n
127
SER
168
A
LYS
169
n
128
LYS
169
A
PRO
170
n
129
PRO
170
A
LYS
171
n
130
LYS
171
A
ALA
172
n
131
TYR
172
A
n
132
173
A
n
133
174
A
n
134
175
A
n
135
176
A
n
136
177
A
n
137
178
A
n
138
179
A
n
139
180
A
n
140
181
A
n
141
182
A
n
142
183
A
n
1
59
B
n
2
60
B
n
3
61
B
n
4
62
B
n
5
63
B
n
6
64
B
n
7
65
B
n
8
66
B
n
9
67
B
n
10
68
B
n
11
69
B
n
12
70
B
n
13
71
B
n
14
72
B
n
15
73
B
n
16
74
B
n
17
75
B
ALA
76
n
18
TYR
76
B
ALA
77
n
19
LEU
77
B
CYS
78
n
20
CYS
78
B
PRO
79
n
21
PRO
79
B
ALA
80
n
22
ASN
80
B
ASP
81
n
23
ASP
81
B
TRP
82
n
24
TRP
82
B
LEU
83
n
25
LEU
83
B
LEU
84
n
26
LEU
84
B
ASN
85
n
27
ASN
85
B
GLU
86
n
28
GLU
86
B
GLY
87
n
29
GLY
87
B
LYS
88
n
30
LYS
88
B
CYS
89
n
31
CYS
89
B
TYR
90
n
32
TYR
90
B
TRP
91
n
33
TRP
91
B
PHE
92
n
34
PHE
92
B
SER
93
n
35
SER
93
B
THR
94
n
36
THR
94
B
SER
95
n
37
SER
95
B
PHE
96
n
38
PHE
96
B
LYS
97
n
39
LYS
97
B
THR
98
n
40
THR
98
B
TRP
99
n
41
TRP
99
B
ALA
100
n
42
LYS
100
B
GLU
101
n
43
GLU
101
B
SER
102
n
44
SER
102
B
GLN
103
n
45
GLN
103
B
ARG
104
n
46
ARG
104
B
ASP
105
n
47
ASP
105
B
CYS
106
n
48
CYS
106
B
THR
107
n
49
THR
107
B
GLN
108
n
50
GLN
108
B
LEU
109
n
51
LEU
109
B
GLN
110
n
52
GLN
110
B
ALA
111
n
53
ALA
111
B
HIS
112
n
54
HIS
112
B
LEU
113
n
55
LEU
113
B
LEU
114
n
56
LEU
114
B
VAL
115
n
57
VAL
115
B
ILE
116
n
58
ILE
116
B
ALA
117
n
59
GLN
117
B
ASN
118
n
60
ASN
118
B
LEU
119
n
61
LEU
119
B
ASP
120
n
62
ASP
120
B
GLU
121
n
63
GLU
121
B
LEU
122
n
64
LEU
122
B
ALA
123
n
65
GLU
123
B
PHE
124
n
66
PHE
124
B
ILE
125
n
67
ILE
125
B
GLN
126
n
68
GLN
126
B
ASN
127
n
69
ASN
127
B
SER
128
n
70
SER
128
B
LEU
129
n
71
LEU
129
B
LYS
130
n
72
LYS
130
B
PRO
131
n
73
PRO
131
B
GLY
132
n
74
GLY
132
B
HIS
133
n
75
HIS
133
B
PHE
134
n
76
PHE
134
B
GLY
135
n
77
GLY
135
B
TRP
136
n
78
TRP
136
B
ILE
137
n
79
ILE
137
B
GLY
138
n
80
GLY
138
B
LEU
139
n
81
LEU
139
B
TYR
140
n
82
TYR
140
B
VAL
141
n
83
VAL
141
B
THR
142
n
84
THR
142
B
PHE
143
n
85
PHE
143
B
GLN
144
n
86
GLN
144
B
GLY
145
n
87
GLY
145
B
ASN
146
n
88
ASN
146
B
LEU
147
n
89
LEU
147
B
TRP
148
n
90
TRP
148
B
MET
149
n
91
MET
149
B
TRP
150
n
92
TRP
150
B
ILE
151
n
93
ILE
151
B
ASP
152
n
94
ASP
152
B
GLU
153
n
95
GLU
153
B
HIS
154
n
96
HIS
154
B
ALA
155
n
97
PHE
155
B
LEU
156
n
98
LEU
156
B
VAL
157
n
99
VAL
157
B
PRO
158
n
100
PRO
158
B
ALA
159
n
101
GLU
159
B
LEU
160
n
102
LEU
160
B
PHE
161
n
103
PHE
161
B
SER
162
n
104
SER
162
B
ALA
163
n
105
VAL
163
B
ALA
164
n
106
ILE
164
B
GLY
165
n
107
GLY
165
B
PRO
166
n
108
PRO
166
B
THR
167
n
109
THR
167
B
ASP
168
n
110
ASP
168
B
ASP
169
n
111
ASP
169
B
ARG
170
n
112
ARG
170
B
SER
171
n
113
SER
171
B
CYS
172
n
114
CYS
172
B
ALA
173
n
115
ALA
173
B
VAL
174
n
116
VAL
174
B
ILE
175
n
117
ILE
175
B
THR
176
n
118
THR
176
B
GLY
177
n
119
GLY
177
B
ASN
178
n
120
ASN
178
B
TRP
179
n
121
TRP
179
B
VAL
180
n
122
VAL
180
B
TYR
181
n
123
TYR
181
B
SER
182
n
124
SER
182
B
GLU
183
n
125
GLU
183
B
ASP
184
n
126
ASP
184
B
CYS
185
n
127
CYS
185
B
SER
186
n
128
SER
186
B
SER
187
n
129
SER
187
B
THR
188
n
130
THR
188
B
PHE
189
n
131
PHE
189
B
LYS
190
n
132
LYS
190
B
GLY
191
n
133
GLY
191
B
ILE
192
n
134
ILE
192
B
CYS
193
n
135
CYS
193
B
GLN
194
n
136
GLN
194
B
ARG
195
n
137
ARG
195
B
ASP
196
n
138
ASP
196
B
n
139
197
B
n
140
198
B
n
141
199
B
n
142
200
B
n
143
201
B
n
144
202
B
n
145
203
B
n
146
204
B
n
147
205
B
n
148
206
B
n
149
207
B
n
150
208
B
n
151
209
B
n
152
210
B
n
153
211
B
n
154
212
B
n
155
213
B
n
156
214
B
n
157
215
B
n
158
216
B
author_and_software_defined_assembly
PISA
2
dimeric
3030
11
12360
A
ASN
78
GLYCOSYLATION SITE
A
ASN
37
ASN
A
ASN
130
GLYCOSYLATION SITE
A
ASN
89
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
63
A
N
LEU
22
A
O
PHE
70
A
O
PHE
29
A
N
TYR
71
A
N
TYR
30
A
O
CYS
167
A
O
CYS
126
A
O
ILE
166
A
O
ILE
125
A
N
TRP
115
A
N
TRP
74
A
N
SER
119
A
N
SER
78
A
O
LYS
127
A
O
LYS
86
A
N
GLU
92
A
N
GLU
51
A
O
SER
168
A
O
SER
127
A
O
ILE
166
A
O
ILE
125
A
N
TRP
115
A
N
TRP
74
A
N
HIS
114
A
N
HIS
73
A
O
LEU
149
A
O
LEU
108
A
N
PHE
148
A
N
PHE
107
A
O
HIS
155
A
O
HIS
114
B
N
ASN
85
B
N
ASN
27
B
O
LYS
88
B
O
LYS
30
B
N
CYS
89
B
N
CYS
31
B
O
ARG
195
B
O
ARG
137
B
O
GLN
194
B
O
GLN
136
B
N
HIS
112
B
N
HIS
54
B
N
LYS
97
B
N
LYS
39
B
O
PHE
189
B
O
PHE
131
B
O
HIS
154
B
O
HIS
96
B
N
TRP
150
B
N
TRP
92
B
O
MET
149
B
O
MET
91
B
N
TYR
140
B
N
TYR
82
B
N
VAL
141
B
N
VAL
83
B
O
SER
171
B
O
SER
113
B
N
CYS
172
B
N
CYS
114
B
O
GLU
183
B
O
GLU
125
1
A
CB
VAL
56
A
CB
VAL
15
1
Y
1
A
CG1
VAL
56
A
CG1
VAL
15
1
Y
1
A
CG2
VAL
56
A
CG2
VAL
15
1
Y
1
A
CB
ALA
57
A
CB
ALA
16
1
Y
1
A
CG
GLU
92
A
CG
GLU
51
1
Y
1
A
CD
GLU
92
A
CD
GLU
51
1
Y
1
A
OE1
GLU
92
A
OE1
GLU
51
1
Y
1
A
OE2
GLU
92
A
OE2
GLU
51
1
Y
1
A
CG
GLU
100
A
CG
GLU
59
1
Y
1
A
CD
GLU
100
A
CD
GLU
59
1
Y
1
A
OE1
GLU
100
A
OE1
GLU
59
1
Y
1
A
OE2
GLU
100
A
OE2
GLU
59
1
Y
1
A
CG
LYS
121
A
CG
LYS
80
1
Y
1
A
CD
LYS
121
A
CD
LYS
80
1
Y
1
A
CE
LYS
121
A
CE
LYS
80
1
Y
1
A
NZ
LYS
121
A
NZ
LYS
80
1
Y
1
A
CG
LYS
127
A
CG
LYS
86
1
Y
1
A
CD
LYS
127
A
CD
LYS
86
1
Y
1
A
CE
LYS
127
A
CE
LYS
86
1
Y
1
A
NZ
LYS
127
A
NZ
LYS
86
1
Y
1
A
CG
TYR
172
A
CG
TYR
131
1
Y
1
A
CD1
TYR
172
A
CD1
TYR
131
1
Y
1
A
CD2
TYR
172
A
CD2
TYR
131
1
Y
1
A
CE1
TYR
172
A
CE1
TYR
131
1
Y
1
A
CE2
TYR
172
A
CE2
TYR
131
1
Y
1
A
CZ
TYR
172
A
CZ
TYR
131
1
Y
1
A
OH
TYR
172
A
OH
TYR
131
1
Y
1
B
CG
TYR
76
B
CG
TYR
18
1
Y
1
B
CD1
TYR
76
B
CD1
TYR
18
1
Y
1
B
CD2
TYR
76
B
CD2
TYR
18
1
Y
1
B
CE1
TYR
76
B
CE1
TYR
18
1
Y
1
B
CE2
TYR
76
B
CE2
TYR
18
1
Y
1
B
CZ
TYR
76
B
CZ
TYR
18
1
Y
1
B
OH
TYR
76
B
OH
TYR
18
1
Y
1
B
CG
LEU
77
B
CG
LEU
19
1
Y
1
B
CD1
LEU
77
B
CD1
LEU
19
1
Y
1
B
CD2
LEU
77
B
CD2
LEU
19
1
Y
1
B
CG
ASN
80
B
CG
ASN
22
1
Y
1
B
OD1
ASN
80
B
OD1
ASN
22
1
Y
1
B
ND2
ASN
80
B
ND2
ASN
22
1
Y
1
B
CG
LYS
100
B
CG
LYS
42
1
Y
1
B
CD
LYS
100
B
CD
LYS
42
1
Y
1
B
CE
LYS
100
B
CE
LYS
42
1
Y
1
B
NZ
LYS
100
B
NZ
LYS
42
1
Y
1
B
CG
GLN
117
B
CG
GLN
59
1
Y
1
B
CD
GLN
117
B
CD
GLN
59
1
Y
1
B
OE1
GLN
117
B
OE1
GLN
59
1
Y
1
B
NE2
GLN
117
B
NE2
GLN
59
1
Y
1
B
CG
GLU
123
B
CG
GLU
65
1
Y
1
B
CD
GLU
123
B
CD
GLU
65
1
Y
1
B
OE1
GLU
123
B
OE1
GLU
65
1
Y
1
B
OE2
GLU
123
B
OE2
GLU
65
1
Y
1
B
CG
PHE
155
B
CG
PHE
97
1
Y
1
B
CD1
PHE
155
B
CD1
PHE
97
1
Y
1
B
CD2
PHE
155
B
CD2
PHE
97
1
Y
1
B
CE1
PHE
155
B
CE1
PHE
97
1
Y
1
B
CE2
PHE
155
B
CE2
PHE
97
1
Y
1
B
CZ
PHE
155
B
CZ
PHE
97
1
Y
1
B
CG
GLU
159
B
CG
GLU
101
1
Y
1
B
CD
GLU
159
B
CD
GLU
101
1
Y
1
B
OE1
GLU
159
B
OE1
GLU
101
1
Y
1
B
OE2
GLU
159
B
OE2
GLU
101
1
Y
1
B
CG1
VAL
163
B
CG1
VAL
105
1
Y
1
B
CG2
VAL
163
B
CG2
VAL
105
1
Y
1
B
CG1
ILE
164
B
CG1
ILE
106
1
Y
1
B
CG2
ILE
164
B
CG2
ILE
106
1
Y
1
B
CD1
ILE
164
B
CD1
ILE
106
1
Y
1
A
ASP
42
A
ASP
1
1
Y
1
A
LEU
43
A
LEU
2
1
Y
1
A
GLY
44
A
GLY
3
1
Y
1
A
SER
45
A
SER
4
1
Y
1
A
ILE
46
A
ILE
5
1
Y
1
A
ALA
47
A
ALA
6
1
Y
1
A
THR
48
A
THR
7
1
Y
1
A
TRP
49
A
TRP
8
1
Y
1
A
SER
50
A
SER
9
1
Y
1
A
LYS
51
A
LYS
10
1
Y
1
A
HIS
52
A
HIS
11
1
Y
1
A
ALA
53
A
ALA
12
1
Y
1
A
LYS
54
A
LYS
13
1
Y
1
A
PRO
55
A
PRO
14
1
Y
1
A
PHE
173
A
PHE
132
1
Y
1
A
LEU
174
A
LEU
133
1
Y
1
A
ALA
175
A
ALA
134
1
Y
1
A
ALA
176
A
ALA
135
1
Y
1
A
ALA
177
A
ALA
136
1
Y
1
A
HIS
178
A
HIS
137
1
Y
1
A
HIS
179
A
HIS
138
1
Y
1
A
HIS
180
A
HIS
139
1
Y
1
A
HIS
181
A
HIS
140
1
Y
1
A
HIS
182
A
HIS
141
1
Y
1
A
HIS
183
A
HIS
142
1
Y
1
B
ASP
59
B
ASP
1
1
Y
1
B
LEU
60
B
LEU
2
1
Y
1
B
GLY
61
B
GLY
3
1
Y
1
B
SER
62
B
SER
4
1
Y
1
B
SER
63
B
SER
5
1
Y
1
B
GLN
64
B
GLN
6
1
Y
1
B
ASN
65
B
ASN
7
1
Y
1
B
VAL
66
B
VAL
8
1
Y
1
B
ASN
67
B
ASN
9
1
Y
1
B
VAL
68
B
VAL
10
1
Y
1
B
SER
69
B
SER
11
1
Y
1
B
SER
70
B
SER
12
1
Y
1
B
LEU
71
B
LEU
13
1
Y
1
B
SER
72
B
SER
14
1
Y
1
B
GLY
73
B
GLY
15
1
Y
1
B
HIS
74
B
HIS
16
1
Y
1
B
ASN
75
B
ASN
17
1
Y
1
B
ALA
197
B
ALA
139
1
Y
1
B
ILE
198
B
ILE
140
1
Y
1
B
LEU
199
B
LEU
141
1
Y
1
B
THR
200
B
THR
142
1
Y
1
B
HIS
201
B
HIS
143
1
Y
1
B
ASN
202
B
ASN
144
1
Y
1
B
GLY
203
B
GLY
145
1
Y
1
B
THR
204
B
THR
146
1
Y
1
B
SER
205
B
SER
147
1
Y
1
B
GLY
206
B
GLY
148
1
Y
1
B
VAL
207
B
VAL
149
1
Y
1
B
ALA
208
B
ALA
150
1
Y
1
B
ALA
209
B
ALA
151
1
Y
1
B
ALA
210
B
ALA
152
1
Y
1
B
HIS
211
B
HIS
153
1
Y
1
B
HIS
212
B
HIS
154
1
Y
1
B
HIS
213
B
HIS
155
1
Y
1
B
HIS
214
B
HIS
156
1
Y
1
B
HIS
215
B
HIS
157
1
Y
1
B
HIS
216
B
HIS
158
1
Y
1
A
ALA
57
81.20
174.80
1
A
SER
59
-62.60
-168.67
1
A
ARG
66
58.18
-126.16
1
A
LEU
88
-76.34
24.93
1
A
GLN
89
-157.43
24.93
1
A
LYS
90
34.68
65.08
1
A
LEU
93
-27.78
96.73
1
A
ALA
94
-0.30
79.09
1
A
TYR
108
-96.78
49.05
1
A
ALA
109
-162.19
-33.36
1
A
THR
111
-40.94
-14.05
1
A
GLN
122
37.46
90.77
1
A
ASP
124
-42.80
-93.29
1
A
SER
125
-172.84
141.60
1
A
TRP
128
-59.38
-166.13
1
A
ASN
130
-58.09
-127.92
1
A
THR
132
151.98
137.13
1
A
ASN
135
-67.24
-108.29
1
A
ILE
140
-146.62
59.36
1
A
ASN
143
80.66
61.97
1
A
PRO
170
-39.35
124.53
1
B
PRO
79
-43.24
-177.18
1
B
ASP
81
68.28
64.38
1
B
TRP
82
-154.32
83.55
1
B
LEU
83
-49.00
166.73
1
B
GLU
86
62.76
-172.09
1
B
PHE
92
-92.13
39.17
1
B
SER
93
41.84
-156.83
1
B
THR
94
-168.38
-21.60
1
B
GLN
108
-67.53
7.62
1
B
LEU
109
-147.66
46.04
1
B
GLN
110
25.81
63.71
1
B
ILE
116
-58.81
91.27
1
B
LEU
119
-19.35
-39.20
1
B
GLU
123
-73.19
33.44
1
B
PHE
124
-135.37
-49.36
1
B
GLN
126
-49.03
-71.50
1
B
ASN
127
-87.45
42.60
1
B
PRO
131
-25.64
121.07
1
B
TRP
136
-56.36
176.92
1
B
PHE
143
80.31
-51.91
1
B
GLN
144
-77.64
-92.95
1
B
LEU
147
-123.44
-169.66
1
B
ILE
151
-55.51
-9.77
1
B
GLU
153
72.05
62.34
1
B
PRO
158
-59.66
-7.21
1
B
PHE
161
-166.94
-159.17
1
B
SER
162
-167.46
106.44
1
B
ILE
192
-154.21
87.63
1
B
ARG
195
162.71
175.24
CNS_TOPPAR:protein_rep.param
CNS_TOPPAR:carbohydrate.param
99.66
4.99300
0.00000
0.00000
4.99300
0.00000
-9.98600
0.297
0.252
0.252
3.20
50.00
749
6727
11.100
99.8
1.000
1.000
1
MOLECULAR REPLACEMENT
31.05
3.20
50.00
0
1957
78
0
1879
0.010
0.4563
0.4105
3.2800
57
408
465
14
0.3646
0.3566
3.3700
61
398
459
14
0.3528
0.3348
3.4700
57
407
464
14
0.2991
0.3142
3.5800
39
430
469
14
0.3546
0.3128
3.7100
51
423
474
14
0.3690
0.2813
3.8600
42
419
461
14
0.3610
0.2766
4.0300
54
419
473
14
0.3035
0.2345
4.2400
45
434
479
14
0.2626
0.2012
4.5100
55
424
479
14
0.2765
0.1989
4.8600
61
427
488
14
0.2660
0.2159
5.3500
57
422
479
14
0.2485
0.1907
6.1200
52
436
488
14
0.2605
0.1986
7.7000
57
447
504
14
0.2577
0.2617
50.0000
61
484
545
14
3.200
71.962
4IOP
6745
-3.000
0.091
1
33.150
99.700
0.479
3.200
3.280
5.810
1
100.000
0.469
3.280
3.370
6.290
1
99.800
0.396
3.370
3.470
7.830
1
99.800
0.364
3.470
3.580
9.430
1
99.600
0.324
3.580
3.700
11.330
1
99.800
0.248
3.700
3.830
15.380
1
99.800
0.199
3.830
3.970
19.800
1
99.800
0.167
3.970
4.130
23.660
1
99.500
0.130
4.130
4.320
30.660
1
100.000
0.107
4.320
4.530
36.640
1
99.700
0.082
4.530
4.770
45.210
1
100.0
0.080
4.770
5.060
45.660
1
100.000
0.080
5.060
5.410
48.560
1
100.000
0.071
5.410
5.840
51.930
1
100.000
0.061
5.840
6.400
59.690
1
99.600
0.057
6.400
7.160
63.470
1
100.0
0.040
7.160
8.260
75.520
1
100.000
0.029
8.260
10.120
98.770
1
99.500
0.025
10.120
14.310
107.260
1
100.000
0.022
14.310
89.710
1
91.700
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Fri May 5 14:40:40 2006
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
1.3.2
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
C-type lectin domain family 2 member A, Killer cell lectin-like receptor subfamily F member 2
Crystal structure of NKp65 bound to its ligand KACL
1
N
N
2
N
N
3
N
N
3
N
N
A
ASN
78
A
ASN
37
HELX_P
A
LEU
88
A
LEU
47
1
1
11
A
THR
98
A
THR
57
HELX_P
A
TYR
108
A
TYR
67
1
2
11
B
TRP
99
B
TRP
41
HELX_P
B
GLN
108
B
GLN
50
1
3
10
B
ASN
118
B
ASN
60
HELX_P
B
GLN
126
B
GLN
68
1
4
9
B
ASN
127
B
ASN
69
HELX_P
B
LEU
129
B
LEU
71
5
5
3
disulf
2.032
A
CYS
58
A
SG
CYS
17
1_555
A
CYS
69
A
SG
CYS
28
1_555
disulf
2.032
A
CYS
86
A
SG
CYS
45
1_555
A
CYS
167
A
SG
CYS
126
1_555
disulf
2.034
B
CYS
78
B
SG
CYS
20
1_555
B
CYS
89
B
SG
CYS
31
1_555
disulf
2.034
B
CYS
106
B
SG
CYS
48
1_555
B
CYS
193
B
SG
CYS
135
1_555
disulf
2.043
B
CYS
172
B
SG
CYS
114
1_555
B
CYS
185
B
SG
CYS
127
1_555
covale
1.460
one
N-Glycosylation
A
ASN
78
A
ND2
ASN
37
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.464
one
N-Glycosylation
A
ASN
130
A
ND2
ASN
89
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.405
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.401
both
C
NAG
2
C
O4
NAG
1_555
C
MAN
3
C
C1
MAN
1_555
covale
1.369
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.390
both
D
NAG
2
D
O4
NAG
1_555
D
MAN
3
D
C1
MAN
1_555
IMMUNE SYSTEM
NK cell receptor, receptor-ligand complex, IMMUNE SYSTEM
CLC2A_HUMAN
UNP
1
46
Q6UVW9
IATWSKHAKPVACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQEDMEFLKRYAGTDMHWIGLSRKQGDS
WKWTNGTTFNGWFEIIGNGSFAFLSADGVHSSRGFIDIKWICSKPKYFL
KLRF2_HUMAN
UNP
2
63
D3W0D1
SQNVNVSSLSGHNYLCPNDWLLNEGKCYWFSTSFKTWKESQRDCTQLQAHLLVIQNLDELEFIQNSLKPGHFGWIGLYVT
FQGNLWMWIDEHFLVPELFSVIGPTDDRSCAVITGNWVYSEDCSSTFKGICQRDAILTHNGTSGV
46
174
4IOP
46
174
Q6UVW9
A
1
5
133
63
207
4IOP
63
207
D3W0D1
B
2
5
149
1
expression tag
ASP
42
4IOP
A
Q6UVW9
UNP
1
1
expression tag
LEU
43
4IOP
A
Q6UVW9
UNP
2
1
expression tag
GLY
44
4IOP
A
Q6UVW9
UNP
3
1
expression tag
SER
45
4IOP
A
Q6UVW9
UNP
4
1
expression tag
ALA
175
4IOP
A
Q6UVW9
UNP
134
1
expression tag
ALA
176
4IOP
A
Q6UVW9
UNP
135
1
expression tag
ALA
177
4IOP
A
Q6UVW9
UNP
136
1
expression tag
HIS
178
4IOP
A
Q6UVW9
UNP
137
1
expression tag
HIS
179
4IOP
A
Q6UVW9
UNP
138
1
expression tag
HIS
180
4IOP
A
Q6UVW9
UNP
139
1
expression tag
HIS
181
4IOP
A
Q6UVW9
UNP
140
1
expression tag
HIS
182
4IOP
A
Q6UVW9
UNP
141
1
expression tag
HIS
183
4IOP
A
Q6UVW9
UNP
142
2
expression tag
ASP
59
4IOP
B
D3W0D1
UNP
1
2
expression tag
LEU
60
4IOP
B
D3W0D1
UNP
2
2
expression tag
GLY
61
4IOP
B
D3W0D1
UNP
3
2
expression tag
SER
62
4IOP
B
D3W0D1
UNP
4
2
expression tag
ALA
208
4IOP
B
D3W0D1
UNP
150
2
expression tag
ALA
209
4IOP
B
D3W0D1
UNP
151
2
expression tag
ALA
210
4IOP
B
D3W0D1
UNP
152
2
expression tag
HIS
211
4IOP
B
D3W0D1
UNP
153
2
expression tag
HIS
212
4IOP
B
D3W0D1
UNP
154
2
expression tag
HIS
213
4IOP
B
D3W0D1
UNP
155
2
expression tag
HIS
214
4IOP
B
D3W0D1
UNP
156
2
expression tag
HIS
215
4IOP
B
D3W0D1
UNP
157
2
expression tag
HIS
216
4IOP
B
D3W0D1
UNP
158
5
5
4
2
5
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
63
A
LEU
22
A
VAL
65
A
VAL
24
A
LYS
68
A
LYS
27
A
PHE
72
A
PHE
31
A
LYS
164
A
LYS
123
A
PRO
170
A
PRO
129
A
HIS
114
A
HIS
73
A
ARG
120
A
ARG
79
A
TRP
126
A
TRP
85
A
LYS
127
A
LYS
86
A
GLU
92
A
GLU
51
A
LEU
93
A
LEU
52
A
LYS
164
A
LYS
123
A
PRO
170
A
PRO
129
A
HIS
114
A
HIS
73
A
ARG
120
A
ARG
79
A
PHE
146
A
PHE
105
A
LEU
149
A
LEU
108
A
VAL
154
A
VAL
113
A
SER
157
A
SER
116
B
LEU
83
B
LEU
25
B
ASN
85
B
ASN
27
B
LYS
88
B
LYS
30
B
TRP
91
B
TRP
33
B
CYS
193
B
CYS
135
B
ARG
195
B
ARG
137
B
HIS
112
B
HIS
54
B
LEU
113
B
LEU
55
B
PHE
96
B
PHE
38
B
THR
98
B
THR
40
B
THR
188
B
THR
130
B
LYS
190
B
LYS
132
B
HIS
154
B
HIS
96
B
PHE
155
B
PHE
97
B
TRP
148
B
TRP
90
B
TRP
150
B
TRP
92
B
PHE
134
B
PHE
76
B
VAL
141
B
VAL
83
B
SER
171
B
SER
113
B
THR
176
B
THR
118
B
VAL
180
B
VAL
122
B
ASP
184
B
ASP
126
98
I 41 2 2