0.008611
0.000000
0.000000
0.000000
0.008611
0.000000
0.000000
0.000000
0.008391
0.00000
0.00000
0.00000
Wang, H.
Liu, Q.
Niu, L.
Teng, M.
Li, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
116.129
116.129
119.179
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
DK
Acta Crystallogr.,Sect.F
1744-3091
68
978
980
10.1107/S1744309112028989
22869137
Preliminary crystallographic analysis of glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae.
2012
10.2210/pdb4iq8/pdb
pdb_00004iq8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2011-06-11
MAR scanner 345 mm plate
Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
0.9792
ROTATING ANODE
RIGAKU RUH3R
36808.734
Glyceraldehyde-3-phosphate dehydrogenase 3
1.2.1.12
1
man
polymer
18.015
water
20
nat
water
GAPDH 3
no
no
MGHHHHHHMVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKI
ATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTT
NCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFR
VPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWY
DNEYGYSTRVVDLVEHVAKA
MGHHHHHHMVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKI
ATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTT
NCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFR
VPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWY
DNEYGYSTRVVDLVEHVAKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508 / S288c
sample
TDH3, GPD3, YGR192C, G7576
559292
Saccharomyces cerevisiae
562
Escherichia coli
1
2.73
54.93
VAPOR DIFFUSION, HANGING DROP
4.0
12% PEG 3350, 0.1M sodium malonate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 287K
287
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
Refinement description
1
0
2013-02-06
1
1
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-01-11
REL
REL
HOH
water
3PYM
PDB
experimental model
HOH
1
2
HOH
HOH
401
A
HOH
2
2
HOH
HOH
402
A
HOH
3
2
HOH
HOH
403
A
HOH
4
2
HOH
HOH
404
A
HOH
5
2
HOH
HOH
405
A
HOH
6
2
HOH
HOH
406
A
HOH
7
2
HOH
HOH
407
A
HOH
8
2
HOH
HOH
408
A
HOH
9
2
HOH
HOH
409
A
HOH
10
2
HOH
HOH
410
A
HOH
11
2
HOH
HOH
411
A
HOH
12
2
HOH
HOH
412
A
HOH
13
2
HOH
HOH
413
A
HOH
14
2
HOH
HOH
414
A
HOH
15
2
HOH
HOH
415
A
HOH
16
2
HOH
HOH
416
A
HOH
17
2
HOH
HOH
417
A
HOH
18
2
HOH
HOH
418
A
HOH
19
2
HOH
HOH
419
A
HOH
20
2
HOH
HOH
420
A
n
1
-7
A
n
2
-6
A
n
3
-5
A
n
4
-4
A
n
5
-3
A
n
6
-2
A
n
7
-1
A
n
8
0
A
n
9
1
A
VAL
2
n
10
VAL
2
A
ARG
3
n
11
ARG
3
A
VAL
4
n
12
VAL
4
A
ALA
5
n
13
ALA
5
A
ILE
6
n
14
ILE
6
A
ASN
7
n
15
ASN
7
A
GLY
8
n
16
GLY
8
A
PHE
9
n
17
PHE
9
A
GLY
10
n
18
GLY
10
A
ARG
11
n
19
ARG
11
A
ILE
12
n
20
ILE
12
A
GLY
13
n
21
GLY
13
A
ARG
14
n
22
ARG
14
A
LEU
15
n
23
LEU
15
A
VAL
16
n
24
VAL
16
A
MET
17
n
25
MET
17
A
ARG
18
n
26
ARG
18
A
ILE
19
n
27
ILE
19
A
ALA
20
n
28
ALA
20
A
LEU
21
n
29
LEU
21
A
SER
22
n
30
SER
22
A
ARG
23
n
31
ARG
23
A
PRO
24
n
32
PRO
24
A
ASN
25
n
33
ASN
25
A
VAL
26
n
34
VAL
26
A
GLU
27
n
35
GLU
27
A
VAL
28
n
36
VAL
28
A
VAL
29
n
37
VAL
29
A
ALA
30
n
38
ALA
30
A
LEU
31
n
39
LEU
31
A
ASN
32
n
40
ASN
32
A
ASP
33
n
41
ASP
33
A
PRO
34
n
42
PRO
34
A
PHE
35
n
43
PHE
35
A
ILE
36
n
44
ILE
36
A
THR
37
n
45
THR
37
A
ASN
38
n
46
ASN
38
A
ASP
39
n
47
ASP
39
A
TYR
40
n
48
TYR
40
A
ALA
41
n
49
ALA
41
A
ALA
42
n
50
ALA
42
A
TYR
43
n
51
TYR
43
A
MET
44
n
52
MET
44
A
PHE
45
n
53
PHE
45
A
LYS
46
n
54
LYS
46
A
TYR
47
n
55
TYR
47
A
ASP
48
n
56
ASP
48
A
SER
49
n
57
SER
49
A
THR
50
n
58
THR
50
A
HIS
51
n
59
HIS
51
A
GLY
52
n
60
GLY
52
A
ARG
53
n
61
ARG
53
A
TYR
54
n
62
TYR
54
A
ALA
55
n
63
ALA
55
A
GLY
56
n
64
GLY
56
A
GLU
57
n
65
GLU
57
A
VAL
58
n
66
VAL
58
A
SER
59
n
67
SER
59
A
HIS
60
n
68
HIS
60
A
ASP
61
n
69
ASP
61
A
ASP
62
n
70
ASP
62
A
LYS
63
n
71
LYS
63
A
HIS
64
n
72
HIS
64
A
ILE
65
n
73
ILE
65
A
ILE
66
n
74
ILE
66
A
VAL
67
n
75
VAL
67
A
ASP
68
n
76
ASP
68
A
GLY
69
n
77
GLY
69
A
LYS
70
n
78
LYS
70
A
LYS
71
n
79
LYS
71
A
ILE
72
n
80
ILE
72
A
ALA
73
n
81
ALA
73
A
THR
74
n
82
THR
74
A
TYR
75
n
83
TYR
75
A
GLN
76
n
84
GLN
76
A
GLU
77
n
85
GLU
77
A
ARG
78
n
86
ARG
78
A
ASP
79
n
87
ASP
79
A
PRO
80
n
88
PRO
80
A
ALA
81
n
89
ALA
81
A
ASN
82
n
90
ASN
82
A
LEU
83
n
91
LEU
83
A
PRO
84
n
92
PRO
84
A
TRP
85
n
93
TRP
85
A
GLY
86
n
94
GLY
86
A
SER
87
n
95
SER
87
A
SER
88
n
96
SER
88
A
ASN
89
n
97
ASN
89
A
VAL
90
n
98
VAL
90
A
ASP
91
n
99
ASP
91
A
ILE
92
n
100
ILE
92
A
ALA
93
n
101
ALA
93
A
ILE
94
n
102
ILE
94
A
ASP
95
n
103
ASP
95
A
SER
96
n
104
SER
96
A
THR
97
n
105
THR
97
A
GLY
98
n
106
GLY
98
A
VAL
99
n
107
VAL
99
A
PHE
100
n
108
PHE
100
A
LYS
101
n
109
LYS
101
A
GLU
102
n
110
GLU
102
A
LEU
103
n
111
LEU
103
A
ASP
104
n
112
ASP
104
A
THR
105
n
113
THR
105
A
ALA
106
n
114
ALA
106
A
GLN
107
n
115
GLN
107
A
LYS
108
n
116
LYS
108
A
HIS
109
n
117
HIS
109
A
ILE
110
n
118
ILE
110
A
ASP
111
n
119
ASP
111
A
ALA
112
n
120
ALA
112
A
GLY
113
n
121
GLY
113
A
ALA
114
n
122
ALA
114
A
LYS
115
n
123
LYS
115
A
LYS
116
n
124
LYS
116
A
VAL
117
n
125
VAL
117
A
VAL
118
n
126
VAL
118
A
ILE
119
n
127
ILE
119
A
THR
120
n
128
THR
120
A
ALA
121
n
129
ALA
121
A
PRO
122
n
130
PRO
122
A
SER
123
n
131
SER
123
A
SER
124
n
132
SER
124
A
THR
125
n
133
THR
125
A
ALA
126
n
134
ALA
126
A
PRO
127
n
135
PRO
127
A
MET
128
n
136
MET
128
A
PHE
129
n
137
PHE
129
A
VAL
130
n
138
VAL
130
A
MET
131
n
139
MET
131
A
GLY
132
n
140
GLY
132
A
VAL
133
n
141
VAL
133
A
ASN
134
n
142
ASN
134
A
GLU
135
n
143
GLU
135
A
GLU
136
n
144
GLU
136
A
LYS
137
n
145
LYS
137
A
TYR
138
n
146
TYR
138
A
THR
139
n
147
THR
139
A
SER
140
n
148
SER
140
A
ASP
141
n
149
ASP
141
A
LEU
142
n
150
LEU
142
A
LYS
143
n
151
LYS
143
A
ILE
144
n
152
ILE
144
A
VAL
145
n
153
VAL
145
A
SER
146
n
154
SER
146
A
ASN
147
n
155
ASN
147
A
ALA
148
n
156
ALA
148
A
SER
149
n
157
SER
149
A
CYS
150
n
158
CYS
150
A
THR
151
n
159
THR
151
A
THR
152
n
160
THR
152
A
ASN
153
n
161
ASN
153
A
CYS
154
n
162
CYS
154
A
LEU
155
n
163
LEU
155
A
ALA
156
n
164
ALA
156
A
PRO
157
n
165
PRO
157
A
LEU
158
n
166
LEU
158
A
ALA
159
n
167
ALA
159
A
LYS
160
n
168
LYS
160
A
VAL
161
n
169
VAL
161
A
ILE
162
n
170
ILE
162
A
ASN
163
n
171
ASN
163
A
ASP
164
n
172
ASP
164
A
ALA
165
n
173
ALA
165
A
PHE
166
n
174
PHE
166
A
GLY
167
n
175
GLY
167
A
ILE
168
n
176
ILE
168
A
GLU
169
n
177
GLU
169
A
GLU
170
n
178
GLU
170
A
GLY
171
n
179
GLY
171
A
LEU
172
n
180
LEU
172
A
MET
173
n
181
MET
173
A
THR
174
n
182
THR
174
A
THR
175
n
183
THR
175
A
VAL
176
n
184
VAL
176
A
HIS
177
n
185
HIS
177
A
SER
178
n
186
SER
178
A
LEU
179
n
187
LEU
179
A
THR
180
n
188
THR
180
A
ALA
181
n
189
ALA
181
A
THR
182
n
190
THR
182
A
GLN
183
n
191
GLN
183
A
LYS
184
n
192
LYS
184
A
THR
185
n
193
THR
185
A
VAL
186
n
194
VAL
186
A
ASP
187
n
195
ASP
187
A
GLY
188
n
196
GLY
188
A
PRO
189
n
197
PRO
189
A
SER
190
n
198
SER
190
A
HIS
191
n
199
HIS
191
A
LYS
192
n
200
LYS
192
A
ASP
193
n
201
ASP
193
A
TRP
194
n
202
TRP
194
A
ARG
195
n
203
ARG
195
A
GLY
196
n
204
GLY
196
A
GLY
197
n
205
GLY
197
A
ARG
198
n
206
ARG
198
A
THR
199
n
207
THR
199
A
ALA
200
n
208
ALA
200
A
SER
201
n
209
SER
201
A
GLY
202
n
210
GLY
202
A
ASN
203
n
211
ASN
203
A
ILE
204
n
212
ILE
204
A
ILE
205
n
213
ILE
205
A
PRO
206
n
214
PRO
206
A
SER
207
n
215
SER
207
A
SER
208
n
216
SER
208
A
THR
209
n
217
THR
209
A
GLY
210
n
218
GLY
210
A
ALA
211
n
219
ALA
211
A
ALA
212
n
220
ALA
212
A
LYS
213
n
221
LYS
213
A
ALA
214
n
222
ALA
214
A
VAL
215
n
223
VAL
215
A
GLY
216
n
224
GLY
216
A
LYS
217
n
225
LYS
217
A
VAL
218
n
226
VAL
218
A
LEU
219
n
227
LEU
219
A
PRO
220
n
228
PRO
220
A
GLU
221
n
229
GLU
221
A
LEU
222
n
230
LEU
222
A
GLN
223
n
231
GLN
223
A
GLY
224
n
232
GLY
224
A
LYS
225
n
233
LYS
225
A
LEU
226
n
234
LEU
226
A
THR
227
n
235
THR
227
A
GLY
228
n
236
GLY
228
A
MET
229
n
237
MET
229
A
ALA
230
n
238
ALA
230
A
PHE
231
n
239
PHE
231
A
ARG
232
n
240
ARG
232
A
VAL
233
n
241
VAL
233
A
PRO
234
n
242
PRO
234
A
THR
235
n
243
THR
235
A
VAL
236
n
244
VAL
236
A
ASP
237
n
245
ASP
237
A
VAL
238
n
246
VAL
238
A
SER
239
n
247
SER
239
A
VAL
240
n
248
VAL
240
A
VAL
241
n
249
VAL
241
A
ASP
242
n
250
ASP
242
A
LEU
243
n
251
LEU
243
A
THR
244
n
252
THR
244
A
VAL
245
n
253
VAL
245
A
LYS
246
n
254
LYS
246
A
LEU
247
n
255
LEU
247
A
ASN
248
n
256
ASN
248
A
LYS
249
n
257
LYS
249
A
GLU
250
n
258
GLU
250
A
THR
251
n
259
THR
251
A
THR
252
n
260
THR
252
A
TYR
253
n
261
TYR
253
A
ASP
254
n
262
ASP
254
A
GLU
255
n
263
GLU
255
A
ILE
256
n
264
ILE
256
A
LYS
257
n
265
LYS
257
A
LYS
258
n
266
LYS
258
A
VAL
259
n
267
VAL
259
A
VAL
260
n
268
VAL
260
A
LYS
261
n
269
LYS
261
A
ALA
262
n
270
ALA
262
A
ALA
263
n
271
ALA
263
A
ALA
264
n
272
ALA
264
A
GLU
265
n
273
GLU
265
A
GLY
266
n
274
GLY
266
A
LYS
267
n
275
LYS
267
A
LEU
268
n
276
LEU
268
A
LYS
269
n
277
LYS
269
A
GLY
270
n
278
GLY
270
A
VAL
271
n
279
VAL
271
A
LEU
272
n
280
LEU
272
A
GLY
273
n
281
GLY
273
A
TYR
274
n
282
TYR
274
A
THR
275
n
283
THR
275
A
GLU
276
n
284
GLU
276
A
ASP
277
n
285
ASP
277
A
ALA
278
n
286
ALA
278
A
VAL
279
n
287
VAL
279
A
VAL
280
n
288
VAL
280
A
SER
281
n
289
SER
281
A
SER
282
n
290
SER
282
A
ASP
283
n
291
ASP
283
A
PHE
284
n
292
PHE
284
A
LEU
285
n
293
LEU
285
A
GLY
286
n
294
GLY
286
A
ASP
287
n
295
ASP
287
A
SER
288
n
296
SER
288
A
HIS
289
n
297
HIS
289
A
SER
290
n
298
SER
290
A
SER
291
n
299
SER
291
A
ILE
292
n
300
ILE
292
A
PHE
293
n
301
PHE
293
A
ASP
294
n
302
ASP
294
A
ALA
295
n
303
ALA
295
A
SER
296
n
304
SER
296
A
ALA
297
n
305
ALA
297
A
GLY
298
n
306
GLY
298
A
ILE
299
n
307
ILE
299
A
GLN
300
n
308
GLN
300
A
LEU
301
n
309
LEU
301
A
SER
302
n
310
SER
302
A
PRO
303
n
311
PRO
303
A
LYS
304
n
312
LYS
304
A
PHE
305
n
313
PHE
305
A
VAL
306
n
314
VAL
306
A
LYS
307
n
315
LYS
307
A
LEU
308
n
316
LEU
308
A
VAL
309
n
317
VAL
309
A
SER
310
n
318
SER
310
A
TRP
311
n
319
TRP
311
A
TYR
312
n
320
TYR
312
A
ASP
313
n
321
ASP
313
A
ASN
314
n
322
ASN
314
A
GLU
315
n
323
GLU
315
A
TYR
316
n
324
TYR
316
A
GLY
317
n
325
GLY
317
A
TYR
318
n
326
TYR
318
A
SER
319
n
327
SER
319
A
THR
320
n
328
THR
320
A
ARG
321
n
329
ARG
321
A
VAL
322
n
330
VAL
322
A
VAL
323
n
331
VAL
323
A
ASP
324
n
332
ASP
324
A
LEU
325
n
333
LEU
325
A
VAL
326
n
334
VAL
326
A
GLU
327
n
335
GLU
327
A
HIS
328
n
336
HIS
328
A
VAL
329
n
337
VAL
329
A
ALA
330
n
338
ALA
330
A
LYS
331
n
339
LYS
331
A
ALA
332
n
340
ALA
332
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
3760
-30
25630
2600
-15
26780
14700
-90
44070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
10_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
59
A
N
SER
67
A
O
ILE
66
A
O
ILE
74
A
N
VAL
67
A
N
VAL
75
A
O
LYS
70
A
O
LYS
78
A
O
TYR
75
A
O
TYR
83
A
N
LEU
31
A
N
LEU
39
A
O
ASN
32
A
O
ASN
40
A
N
ILE
6
A
N
ILE
14
A
N
ALA
5
A
N
ALA
13
A
O
ILE
94
A
O
ILE
102
A
N
ALA
93
A
N
ALA
101
A
O
VAL
118
A
O
VAL
126
A
N
VAL
117
A
N
VAL
125
A
O
VAL
145
A
O
VAL
153
A
N
SER
207
A
N
SER
215
A
O
ALA
230
A
O
ALA
238
A
O
VAL
233
A
O
VAL
241
A
N
HIS
177
A
N
HIS
185
A
N
GLU
170
A
N
GLU
178
A
O
LYS
246
A
O
LYS
254
A
N
LEU
243
A
N
LEU
251
A
O
LEU
308
A
O
LEU
316
A
O
VAL
309
A
O
VAL
317
A
N
ASP
294
A
N
ASP
302
A
O
SER
291
A
O
SER
299
A
N
GLY
273
A
N
GLY
281
A
N
SER
207
A
N
SER
215
A
O
ALA
230
A
O
ALA
238
A
O
VAL
233
A
O
VAL
241
A
N
HIS
177
A
N
HIS
185
A
N
GLU
170
A
N
GLU
178
A
O
LYS
246
A
O
LYS
254
A
N
LEU
243
A
N
LEU
251
A
O
LEU
308
A
O
LEU
316
A
O
LYS
307
A
O
LYS
315
A
N
ILE
299
A
N
ILE
307
1
A
HOH
402
B
HOH
1
A
CG
LYS
258
A
CG
LYS
266
1
Y
1
A
CD
LYS
258
A
CD
LYS
266
1
Y
1
A
CE
LYS
258
A
CE
LYS
266
1
Y
1
A
NZ
LYS
258
A
NZ
LYS
266
1
Y
1
A
OE2
GLU
276
A
OE2
GLU
284
1
Y
1
A
MET
-7
A
MET
1
1
Y
1
A
GLY
-6
A
GLY
2
1
Y
1
A
HIS
-5
A
HIS
3
1
Y
1
A
HIS
-4
A
HIS
4
1
Y
1
A
HIS
-3
A
HIS
5
1
Y
1
A
HIS
-2
A
HIS
6
1
Y
1
A
HIS
-1
A
HIS
7
1
Y
1
A
HIS
0
A
HIS
8
1
Y
1
A
MET
1
A
MET
9
1
Y
1
A
ASN
134
-141.29
29.77
1
A
ALA
148
65.00
-147.43
1
A
ASP
187
-36.37
113.02
1
A
SER
190
-151.73
73.30
1
A
THR
199
-34.70
114.33
1
A
PRO
234
-77.83
23.50
1
A
VAL
238
88.57
124.71
1
A
LYS
269
-32.31
128.52
50.177
-1.54
0.00
0.00
-1.54
0.00
3.08
0.942
0.890
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27358
0.21392
0.21670
2.49
50.0
731
13829
5.0
99.62
9.413
0.209
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.445
0.296
0.80
0.80
1.40
3PYM
MAXIMUM LIKELIHOOD
MASK
2.49
50.0
20
2521
0
0
2501
0.010
0.022
2547
1.182
1.954
3457
6.003
5.000
330
37.424
24.545
99
15.665
15.000
429
15.386
15.000
11
0.080
0.200
406
0.005
0.021
1883
0.588
1.500
1640
1.094
2.000
2650
1.349
3.000
907
2.302
4.500
807
0.355
0.284
2.553
66
972
20
99.62
2.49
50.0
4IQ8
14624
14571
1
99.7
0.459
2.49
2.53
7.71
715
0.407
1
10.8
100.0
data collection
HKL-2000
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae
1
N
N
2
N
N
A
GLY
10
A
GLY
18
HELX_P
A
SER
22
A
SER
30
1
1
13
A
THR
37
A
THR
45
HELX_P
A
TYR
47
A
TYR
55
1
2
11
A
ASP
79
A
ASP
87
HELX_P
A
LEU
83
A
LEU
91
5
3
5
A
ALA
106
A
ALA
114
HELX_P
A
GLY
113
A
GLY
121
1
4
8
A
ASN
134
A
ASN
142
HELX_P
A
TYR
138
A
TYR
146
5
5
5
A
SER
149
A
SER
157
HELX_P
A
GLY
167
A
GLY
175
1
6
19
A
TRP
194
A
TRP
202
HELX_P
A
ARG
198
A
ARG
206
5
7
5
A
GLY
210
A
GLY
218
HELX_P
A
LEU
219
A
LEU
227
1
8
10
A
PRO
220
A
PRO
228
HELX_P
A
GLN
223
A
GLN
231
5
9
4
A
THR
252
A
THR
260
HELX_P
A
GLY
266
A
GLY
274
1
10
15
A
VAL
280
A
VAL
288
HELX_P
A
LEU
285
A
LEU
293
5
11
6
A
GLU
315
A
GLU
323
HELX_P
A
ALA
332
A
ALA
340
1
12
18
OXIDOREDUCTASE
Rossmann Fold, Dehydrogenase, Glyceraldehyde-3-phosphate Binding, Nucleus and Cytoplasm, OXIDOREDUCTASE
G3P3_YEAST
UNP
1
1
P00359
MVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDP
ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAK
VINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSV
VDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYST
RVVDLVEHVAKA
1
332
4IQ8
1
332
P00359
A
1
9
340
1
expression tag
MET
-7
4IQ8
A
P00359
UNP
1
1
expression tag
GLY
-6
4IQ8
A
P00359
UNP
2
1
expression tag
HIS
-5
4IQ8
A
P00359
UNP
3
1
expression tag
HIS
-4
4IQ8
A
P00359
UNP
4
1
expression tag
HIS
-3
4IQ8
A
P00359
UNP
5
1
expression tag
HIS
-2
4IQ8
A
P00359
UNP
6
1
expression tag
HIS
-1
4IQ8
A
P00359
UNP
7
1
expression tag
HIS
0
4IQ8
A
P00359
UNP
8
8
7
6
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
58
A
VAL
66
A
ASP
61
A
ASP
69
A
HIS
64
A
HIS
72
A
VAL
67
A
VAL
75
A
LYS
70
A
LYS
78
A
TYR
75
A
TYR
83
A
GLU
27
A
GLU
35
A
ASN
32
A
ASN
40
A
ARG
3
A
ARG
11
A
ASN
7
A
ASN
15
A
ILE
92
A
ILE
100
A
ASP
95
A
ASP
103
A
LYS
116
A
LYS
124
A
ILE
119
A
ILE
127
A
ILE
144
A
ILE
152
A
SER
146
A
SER
154
A
ILE
205
A
ILE
213
A
SER
208
A
SER
216
A
LEU
226
A
LEU
234
A
VAL
233
A
VAL
241
A
ILE
168
A
ILE
176
A
SER
178
A
SER
186
A
SER
239
A
SER
247
A
LEU
247
A
LEU
255
A
PHE
305
A
PHE
313
A
TYR
312
A
TYR
320
A
SER
291
A
SER
299
A
ASP
294
A
ASP
302
A
LEU
272
A
LEU
280
A
THR
275
A
THR
283
A
ILE
205
A
ILE
213
A
SER
208
A
SER
216
A
LEU
226
A
LEU
234
A
VAL
233
A
VAL
241
A
ILE
168
A
ILE
176
A
SER
178
A
SER
186
A
SER
239
A
SER
247
A
LEU
247
A
LEU
255
A
PHE
305
A
PHE
313
A
TYR
312
A
TYR
320
A
ILE
299
A
ILE
307
A
SER
302
A
SER
310
98
I 41 2 2