0.021436 0.000000 0.000000 0.000000 0.011811 0.000000 0.000000 0.000000 0.008716 0.00000 0.00000 0.00000 Gouge, J. Delarue, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 46.650 84.670 114.730 C17 H12 F N O5 329.279 (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N O N 3 N O N 4 N O N 5 N O N 6 N F N 7 N C N 8 N C N 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N N N 17 N C N 18 N C N 19 N C N 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N N N 38 S C N 39 N C N 40 N O N 41 N C N 42 N O N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N N N 51 S C N 52 N C N 53 N O N 54 N C N 55 N C N 56 N C N 57 N N N 58 N C N 59 N N N 60 N N N 61 N O N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N O N 84 N N N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N O N 101 N O N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 R C N 112 N C N 113 N O N 114 N C N 115 N S N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N N N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N O N 223 N O N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 N C N 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N N Y 251 N C Y 252 N C Y 253 N N N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N O N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N NA N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 R C N 417 N O N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N N Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C N 467 N O N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N N N 481 S C N 482 N C N 483 N O N 484 N C N 485 N C N 486 N C N 487 N O N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 E doub N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing Y 11 N doub Y 12 N sing N 13 N sing Y 14 N doub N 15 N sing Y 16 N doub N 17 N sing N 18 N sing N 19 N sing Y 20 N doub Y 21 N sing N 22 N sing Y 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 Z doub N 30 N doub Y 31 N sing Y 32 N sing Y 33 N sing N 34 N sing Y 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing Y 178 N sing Y 179 N sing Y 180 N doub N 181 N sing Y 182 N sing N 183 N sing Y 184 N doub N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing Y 251 N sing Y 252 N doub Y 253 N doub N 254 N sing Y 255 N sing N 256 N sing Y 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N doub N 364 N sing Y 365 N doub N 366 N sing Y 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 56 7431 7441 10.1021/jm4010187 23968551 New nucleotide-competitive non-nucleoside inhibitors of terminal deoxynucleotidyl transferase: discovery, characterization, and crystal structure in complex with the target. 2013 10.2210/pdb4iqw/pdb pdb_00004iqw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Kirkpatrick-Baez pair of bi-morph mirrors PIXEL 2012-01-30 PSI PILATUS 6M channel cut cryogenically cooled crystal SINGLE WAVELENGTH M x-ray 1 0.918400 1.0 PROXIMA 1 SOLEIL 0.918400 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 43628.734 DNA nucleotidylexotransferase 2.7.7.31 SEE REMARK 999 L398A 1 man polymer 1191.818 5'-D(*GP*CP*CP*G)-3' 1 syn polymer 22.990 SODIUM ION 1 syn non-polymer 329.279 (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid 1 syn non-polymer 18.015 water 187 nat water Terminal addition enzyme, Terminal deoxynucleotidyltransferase, TDT, Terminal transferase no no HMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMK DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQ KAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFW KQQGLLLYCDILESTFEKFKQPSRKVDAADHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLG WTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA HMSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMK DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQ KAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFW KQQGLLLYCDILESTFEKFKQPSRKVDAADHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLG WTGSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA A polypeptide(L) no no (DG)(DC)(DC)(DG) GCCG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample 3 353 Dntt, Tdt 10090 Mus musculus 562 Escherichia coli mouse sample 354 381 Dntt, Tdt 10090 Mus musculus 562 Escherichia coli 1 2.53 51.34 VAPOR DIFFUSION, HANGING DROP 6.0 20% PEG4000, 200 mM sodium formate, 100 mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 entity_src_gen software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Refinement description Source and taxonomy Data collection Database references Derived calculations Refinement description 1 0 2013-09-04 1 1 2013-10-09 1 2 2017-07-26 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-01-13 REL REL NA SODIUM ION 1FQ (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid HOH water PROTEIN FRAGMENT IS THE CATALYTIC CORE OF THE TDT-S (TDT-SMALL) ISOFORM (UNP RESIDUES 132-482, 503-530). 1JMS PDB ENTRY 1JMS PDB experimental model NA 702 3 NA NA 601 A DSP 1 4 1FQ 1FQ 602 A HOH 1 5 HOH HOH 701 A HOH 2 5 HOH HOH 702 A HOH 3 5 HOH HOH 703 A HOH 4 5 HOH HOH 704 A HOH 5 5 HOH HOH 705 A HOH 6 5 HOH HOH 706 A HOH 7 5 HOH HOH 707 A HOH 8 5 HOH HOH 708 A HOH 9 5 HOH HOH 709 A HOH 10 5 HOH HOH 710 A HOH 11 5 HOH HOH 711 A HOH 12 5 HOH HOH 712 A HOH 13 5 HOH HOH 713 A HOH 14 5 HOH HOH 714 A HOH 15 5 HOH HOH 715 A HOH 16 5 HOH HOH 716 A HOH 17 5 HOH HOH 717 A HOH 18 5 HOH HOH 718 A HOH 19 5 HOH HOH 719 A HOH 20 5 HOH HOH 720 A HOH 21 5 HOH HOH 721 A HOH 22 5 HOH HOH 722 A HOH 23 5 HOH HOH 723 A HOH 24 5 HOH HOH 724 A HOH 25 5 HOH HOH 725 A HOH 26 5 HOH HOH 726 A HOH 27 5 HOH HOH 727 A HOH 28 5 HOH HOH 728 A HOH 29 5 HOH HOH 729 A HOH 30 5 HOH HOH 730 A HOH 31 5 HOH HOH 731 A HOH 32 5 HOH HOH 732 A HOH 33 5 HOH HOH 733 A HOH 34 5 HOH HOH 734 A HOH 35 5 HOH HOH 735 A HOH 36 5 HOH HOH 736 A HOH 37 5 HOH HOH 737 A HOH 38 5 HOH HOH 738 A HOH 39 5 HOH HOH 739 A HOH 40 5 HOH HOH 740 A HOH 41 5 HOH HOH 741 A HOH 42 5 HOH HOH 742 A HOH 43 5 HOH HOH 743 A HOH 44 5 HOH HOH 744 A HOH 45 5 HOH HOH 745 A HOH 46 5 HOH HOH 746 A HOH 47 5 HOH HOH 747 A HOH 48 5 HOH HOH 748 A HOH 49 5 HOH HOH 749 A HOH 50 5 HOH HOH 750 A HOH 51 5 HOH HOH 751 A HOH 52 5 HOH HOH 752 A HOH 53 5 HOH HOH 753 A HOH 54 5 HOH HOH 754 A HOH 55 5 HOH HOH 755 A HOH 56 5 HOH HOH 756 A HOH 57 5 HOH HOH 757 A HOH 58 5 HOH HOH 758 A HOH 59 5 HOH HOH 759 A HOH 60 5 HOH HOH 760 A HOH 61 5 HOH HOH 761 A HOH 62 5 HOH HOH 762 A HOH 63 5 HOH HOH 763 A HOH 64 5 HOH HOH 764 A HOH 65 5 HOH HOH 765 A HOH 66 5 HOH HOH 766 A HOH 67 5 HOH HOH 767 A HOH 68 5 HOH HOH 768 A HOH 69 5 HOH HOH 769 A HOH 70 5 HOH HOH 770 A HOH 71 5 HOH HOH 771 A HOH 72 5 HOH HOH 772 A HOH 73 5 HOH HOH 773 A HOH 74 5 HOH HOH 774 A HOH 75 5 HOH HOH 775 A HOH 76 5 HOH HOH 776 A HOH 77 5 HOH HOH 777 A HOH 78 5 HOH HOH 778 A HOH 79 5 HOH HOH 779 A HOH 80 5 HOH HOH 780 A HOH 81 5 HOH HOH 781 A HOH 82 5 HOH HOH 782 A HOH 83 5 HOH HOH 783 A HOH 84 5 HOH HOH 784 A HOH 85 5 HOH HOH 785 A HOH 86 5 HOH HOH 786 A HOH 87 5 HOH HOH 787 A HOH 88 5 HOH HOH 788 A HOH 89 5 HOH HOH 789 A HOH 90 5 HOH HOH 790 A HOH 91 5 HOH HOH 791 A HOH 92 5 HOH HOH 792 A HOH 93 5 HOH HOH 793 A HOH 94 5 HOH HOH 794 A HOH 95 5 HOH HOH 795 A HOH 96 5 HOH HOH 796 A HOH 97 5 HOH HOH 797 A HOH 98 5 HOH HOH 798 A HOH 99 5 HOH HOH 799 A HOH 100 5 HOH HOH 800 A HOH 101 5 HOH HOH 801 A HOH 102 5 HOH HOH 802 A HOH 103 5 HOH HOH 803 A HOH 104 5 HOH HOH 804 A HOH 105 5 HOH HOH 805 A HOH 106 5 HOH HOH 806 A HOH 107 5 HOH HOH 807 A HOH 108 5 HOH HOH 808 A HOH 109 5 HOH HOH 809 A HOH 110 5 HOH HOH 810 A HOH 111 5 HOH HOH 811 A HOH 112 5 HOH HOH 812 A HOH 113 5 HOH HOH 813 A HOH 114 5 HOH HOH 814 A HOH 115 5 HOH HOH 815 A HOH 116 5 HOH HOH 816 A HOH 117 5 HOH HOH 817 A HOH 118 5 HOH HOH 818 A HOH 119 5 HOH HOH 819 A HOH 120 5 HOH HOH 820 A HOH 121 5 HOH HOH 821 A HOH 122 5 HOH HOH 822 A HOH 123 5 HOH HOH 823 A HOH 124 5 HOH HOH 824 A HOH 125 5 HOH HOH 825 A HOH 126 5 HOH HOH 826 A HOH 127 5 HOH HOH 827 A HOH 128 5 HOH HOH 828 A HOH 129 5 HOH HOH 829 A HOH 130 5 HOH HOH 830 A HOH 131 5 HOH HOH 831 A HOH 132 5 HOH HOH 832 A HOH 133 5 HOH HOH 833 A HOH 134 5 HOH HOH 834 A HOH 135 5 HOH HOH 835 A HOH 136 5 HOH HOH 836 A HOH 137 5 HOH HOH 837 A HOH 138 5 HOH HOH 838 A HOH 139 5 HOH HOH 839 A HOH 140 5 HOH HOH 840 A HOH 141 5 HOH HOH 841 A HOH 142 5 HOH HOH 842 A HOH 143 5 HOH HOH 843 A HOH 144 5 HOH HOH 844 A HOH 145 5 HOH HOH 845 A HOH 146 5 HOH HOH 846 A HOH 147 5 HOH HOH 847 A HOH 148 5 HOH HOH 848 A HOH 149 5 HOH HOH 849 A HOH 150 5 HOH HOH 850 A HOH 151 5 HOH HOH 851 A HOH 152 5 HOH HOH 852 A HOH 153 5 HOH HOH 853 A HOH 154 5 HOH HOH 854 A HOH 155 5 HOH HOH 855 A HOH 156 5 HOH HOH 856 A HOH 157 5 HOH HOH 857 A HOH 158 5 HOH HOH 858 A HOH 159 5 HOH HOH 859 A HOH 160 5 HOH HOH 860 A HOH 161 5 HOH HOH 861 A HOH 162 5 HOH HOH 862 A HOH 163 5 HOH HOH 863 A HOH 164 5 HOH HOH 864 A HOH 165 5 HOH HOH 865 A HOH 166 5 HOH HOH 866 A HOH 167 5 HOH HOH 867 A HOH 168 5 HOH HOH 868 A HOH 169 5 HOH HOH 869 A HOH 170 5 HOH HOH 870 A HOH 171 5 HOH HOH 871 A HOH 172 5 HOH HOH 872 A HOH 173 5 HOH HOH 873 A HOH 174 5 HOH HOH 874 A HOH 175 5 HOH HOH 875 A HOH 176 5 HOH HOH 876 A HOH 177 5 HOH HOH 877 A HOH 178 5 HOH HOH 878 A HOH 179 5 HOH HOH 879 A HOH 180 5 HOH HOH 880 A HOH 181 5 HOH HOH 881 A HOH 182 5 HOH HOH 882 A HOH 183 5 HOH HOH 883 A HOH 184 5 HOH HOH 884 A HOH 185 5 HOH HOH 885 A HOH 186 5 HOH HOH 886 A HOH 187 5 HOH HOH 887 A n 1 130 A n 2 131 A n 3 132 A n 4 133 A n 5 134 A n 6 135 A n 7 136 A n 8 137 A n 9 138 A n 10 139 A n 11 140 A n 12 141 A n 13 142 A n 14 143 A n 15 144 A n 16 145 A n 17 146 A n 18 147 A n 19 148 A LYS 149 n 20 LYS 149 A ILE 150 n 21 ILE 150 A SER 151 n 22 SER 151 A GLN 152 n 23 GLN 152 A TYR 153 n 24 TYR 153 A ALA 154 n 25 ALA 154 A CYS 155 n 26 CYS 155 A GLN 156 n 27 GLN 156 A ARG 157 n 28 ARG 157 A ARG 158 n 29 ARG 158 A THR 159 n 30 THR 159 A THR 160 n 31 THR 160 A LEU 161 n 32 LEU 161 A ASN 162 n 33 ASN 162 A ASN 163 n 34 ASN 163 A TYR 164 n 35 TYR 164 A ASN 165 n 36 ASN 165 A GLN 166 n 37 GLN 166 A LEU 167 n 38 LEU 167 A PHE 168 n 39 PHE 168 A THR 169 n 40 THR 169 A ASP 170 n 41 ASP 170 A ALA 171 n 42 ALA 171 A LEU 172 n 43 LEU 172 A ASP 173 n 44 ASP 173 A ILE 174 n 45 ILE 174 A LEU 175 n 46 LEU 175 A ALA 176 n 47 ALA 176 A GLU 177 n 48 GLU 177 A ASN 178 n 49 ASN 178 A ASP 179 n 50 ASP 179 A GLU 180 n 51 GLU 180 A LEU 181 n 52 LEU 181 A ARG 182 n 53 ARG 182 A GLU 183 n 54 GLU 183 A ASN 184 n 55 ASN 184 A GLU 185 n 56 GLU 185 A GLY 186 n 57 GLY 186 A SER 187 n 58 SER 187 A CYS 188 n 59 CYS 188 A LEU 189 n 60 LEU 189 A ALA 190 n 61 ALA 190 A PHE 191 n 62 PHE 191 A MET 192 n 63 MET 192 A ARG 193 n 64 ARG 193 A ALA 194 n 65 ALA 194 A SER 195 n 66 SER 195 A SER 196 n 67 SER 196 A VAL 197 n 68 VAL 197 A LEU 198 n 69 LEU 198 A LYS 199 n 70 LYS 199 A SER 200 n 71 SER 200 A LEU 201 n 72 LEU 201 A PRO 202 n 73 PRO 202 A PHE 203 n 74 PHE 203 A PRO 204 n 75 PRO 204 A ILE 205 n 76 ILE 205 A THR 206 n 77 THR 206 A SER 207 n 78 SER 207 A MET 208 n 79 MET 208 A LYS 209 n 80 LYS 209 A ASP 210 n 81 ASP 210 A THR 211 n 82 THR 211 A GLU 212 n 83 GLU 212 A GLY 213 n 84 GLY 213 A ILE 214 n 85 ILE 214 A PRO 215 n 86 PRO 215 A CYS 216 n 87 CYS 216 A LEU 217 n 88 LEU 217 A GLY 218 n 89 GLY 218 A ASP 219 n 90 ASP 219 A LYS 220 n 91 LYS 220 A VAL 221 n 92 VAL 221 A LYS 222 n 93 LYS 222 A SER 223 n 94 SER 223 A ILE 224 n 95 ILE 224 A ILE 225 n 96 ILE 225 A GLU 226 n 97 GLU 226 A GLY 227 n 98 GLY 227 A ILE 228 n 99 ILE 228 A ILE 229 n 100 ILE 229 A GLU 230 n 101 GLU 230 A ASP 231 n 102 ASP 231 A GLY 232 n 103 GLY 232 A GLU 233 n 104 GLU 233 A SER 234 n 105 SER 234 A SER 235 n 106 SER 235 A GLU 236 n 107 GLU 236 A ALA 237 n 108 ALA 237 A LYS 238 n 109 LYS 238 A ALA 239 n 110 ALA 239 A VAL 240 n 111 VAL 240 A LEU 241 n 112 LEU 241 A ASN 242 n 113 ASN 242 A ASP 243 n 114 ASP 243 A GLU 244 n 115 GLU 244 A ARG 245 n 116 ARG 245 A TYR 246 n 117 TYR 246 A LYS 247 n 118 LYS 247 A SER 248 n 119 SER 248 A PHE 249 n 120 PHE 249 A LYS 250 n 121 LYS 250 A LEU 251 n 122 LEU 251 A PHE 252 n 123 PHE 252 A THR 253 n 124 THR 253 A SER 254 n 125 SER 254 A VAL 255 n 126 VAL 255 A PHE 256 n 127 PHE 256 A GLY 257 n 128 GLY 257 A VAL 258 n 129 VAL 258 A GLY 259 n 130 GLY 259 A LEU 260 n 131 LEU 260 A LYS 261 n 132 LYS 261 A THR 262 n 133 THR 262 A ALA 263 n 134 ALA 263 A GLU 264 n 135 GLU 264 A LYS 265 n 136 LYS 265 A TRP 266 n 137 TRP 266 A PHE 267 n 138 PHE 267 A ARG 268 n 139 ARG 268 A MET 269 n 140 MET 269 A GLY 270 n 141 GLY 270 A PHE 271 n 142 PHE 271 A ARG 272 n 143 ARG 272 A THR 273 n 144 THR 273 A LEU 274 n 145 LEU 274 A SER 275 n 146 SER 275 A LYS 276 n 147 LYS 276 A ILE 277 n 148 ILE 277 A GLN 278 n 149 GLN 278 A SER 279 n 150 SER 279 A ASP 280 n 151 ASP 280 A LYS 281 n 152 LYS 281 A SER 282 n 153 SER 282 A LEU 283 n 154 LEU 283 A ARG 284 n 155 ARG 284 A PHE 285 n 156 PHE 285 A THR 286 n 157 THR 286 A GLN 287 n 158 GLN 287 A MET 288 n 159 MET 288 A GLN 289 n 160 GLN 289 A LYS 290 n 161 LYS 290 A ALA 291 n 162 ALA 291 A GLY 292 n 163 GLY 292 A PHE 293 n 164 PHE 293 A LEU 294 n 165 LEU 294 A TYR 295 n 166 TYR 295 A TYR 296 n 167 TYR 296 A GLU 297 n 168 GLU 297 A ASP 298 n 169 ASP 298 A LEU 299 n 170 LEU 299 A VAL 300 n 171 VAL 300 A SER 301 n 172 SER 301 A CYS 302 n 173 CYS 302 A VAL 303 n 174 VAL 303 A ASN 304 n 175 ASN 304 A ARG 305 n 176 ARG 305 A PRO 306 n 177 PRO 306 A GLU 307 n 178 GLU 307 A ALA 308 n 179 ALA 308 A GLU 309 n 180 GLU 309 A ALA 310 n 181 ALA 310 A VAL 311 n 182 VAL 311 A SER 312 n 183 SER 312 A MET 313 n 184 MET 313 A LEU 314 n 185 LEU 314 A VAL 315 n 186 VAL 315 A LYS 316 n 187 LYS 316 A GLU 317 n 188 GLU 317 A ALA 318 n 189 ALA 318 A VAL 319 n 190 VAL 319 A VAL 320 n 191 VAL 320 A THR 321 n 192 THR 321 A PHE 322 n 193 PHE 322 A LEU 323 n 194 LEU 323 A PRO 324 n 195 PRO 324 A ASP 325 n 196 ASP 325 A ALA 326 n 197 ALA 326 A LEU 327 n 198 LEU 327 A VAL 328 n 199 VAL 328 A THR 329 n 200 THR 329 A MET 330 n 201 MET 330 A THR 331 n 202 THR 331 A GLY 332 n 203 GLY 332 A GLY 333 n 204 GLY 333 A PHE 334 n 205 PHE 334 A ARG 335 n 206 ARG 335 A ARG 336 n 207 ARG 336 A GLY 337 n 208 GLY 337 A LYS 338 n 209 LYS 338 A MET 339 n 210 MET 339 A THR 340 n 211 THR 340 A GLY 341 n 212 GLY 341 A HIS 342 n 213 HIS 342 A ASP 343 n 214 ASP 343 A VAL 344 n 215 VAL 344 A ASP 345 n 216 ASP 345 A PHE 346 n 217 PHE 346 A LEU 347 n 218 LEU 347 A ILE 348 n 219 ILE 348 A THR 349 n 220 THR 349 A SER 350 n 221 SER 350 A PRO 351 n 222 PRO 351 A GLU 352 n 223 GLU 352 A ALA 353 n 224 ALA 353 A THR 354 n 225 THR 354 A GLU 355 n 226 GLU 355 A ASP 356 n 227 ASP 356 A GLU 357 n 228 GLU 357 A GLU 358 n 229 GLU 358 A GLN 359 n 230 GLN 359 A GLN 360 n 231 GLN 360 A LEU 361 n 232 LEU 361 A LEU 362 n 233 LEU 362 A HIS 363 n 234 HIS 363 A LYS 364 n 235 LYS 364 A VAL 365 n 236 VAL 365 A THR 366 n 237 THR 366 A ASP 367 n 238 ASP 367 A PHE 368 n 239 PHE 368 A TRP 369 n 240 TRP 369 A LYS 370 n 241 LYS 370 A GLN 371 n 242 GLN 371 A GLN 372 n 243 GLN 372 A GLY 373 n 244 GLY 373 A LEU 374 n 245 LEU 374 A LEU 375 n 246 LEU 375 A LEU 376 n 247 LEU 376 A TYR 377 n 248 TYR 377 A CYS 378 n 249 CYS 378 A ASP 379 n 250 ASP 379 A ILE 380 n 251 ILE 380 A LEU 381 n 252 LEU 381 A GLU 382 n 253 GLU 382 A SER 383 n 254 SER 383 A THR 384 n 255 THR 384 A PHE 385 n 256 PHE 385 A GLU 386 n 257 GLU 386 A LYS 387 n 258 LYS 387 A PHE 388 n 259 PHE 388 A LYS 389 n 260 LYS 389 A GLN 390 n 261 GLN 390 A PRO 391 n 262 PRO 391 A SER 392 n 263 SER 392 A ARG 393 n 264 ARG 393 A LYS 394 n 265 LYS 394 A n 266 395 A ASP 396 n 267 ASP 396 A ALA 397 n 268 ALA 397 A ALA 398 n 269 ALA 398 A ASP 399 n 270 ASP 399 A HIS 400 n 271 HIS 400 A PHE 401 n 272 PHE 401 A GLN 402 n 273 GLN 402 A LYS 403 n 274 LYS 403 A CYS 404 n 275 CYS 404 A PHE 405 n 276 PHE 405 A LEU 406 n 277 LEU 406 A ILE 407 n 278 ILE 407 A LEU 408 n 279 LEU 408 A LYS 409 n 280 LYS 409 A LEU 410 n 281 LEU 410 A ASP 411 n 282 ASP 411 A HIS 412 n 283 HIS 412 A GLY 413 n 284 GLY 413 A ARG 414 n 285 ARG 414 A VAL 415 n 286 VAL 415 A HIS 416 n 287 HIS 416 A SER 417 n 288 SER 417 A GLU 418 n 289 GLU 418 A LYS 419 n 290 LYS 419 A n 291 420 A n 292 421 A n 293 422 A n 294 423 A GLU 424 n 295 GLU 424 A GLY 425 n 296 GLY 425 A LYS 426 n 297 LYS 426 A GLY 427 n 298 GLY 427 A TRP 428 n 299 TRP 428 A LYS 429 n 300 LYS 429 A ALA 430 n 301 ALA 430 A ILE 431 n 302 ILE 431 A ARG 432 n 303 ARG 432 A VAL 433 n 304 VAL 433 A ASP 434 n 305 ASP 434 A LEU 435 n 306 LEU 435 A VAL 436 n 307 VAL 436 A MET 437 n 308 MET 437 A CYS 438 n 309 CYS 438 A PRO 439 n 310 PRO 439 A TYR 440 n 311 TYR 440 A ASP 441 n 312 ASP 441 A ARG 442 n 313 ARG 442 A ARG 443 n 314 ARG 443 A ALA 444 n 315 ALA 444 A PHE 445 n 316 PHE 445 A ALA 446 n 317 ALA 446 A LEU 447 n 318 LEU 447 A LEU 448 n 319 LEU 448 A GLY 449 n 320 GLY 449 A TRP 450 n 321 TRP 450 A THR 451 n 322 THR 451 A GLY 452 n 323 GLY 452 A SER 453 n 324 SER 453 A ARG 454 n 325 ARG 454 A GLN 455 n 326 GLN 455 A PHE 456 n 327 PHE 456 A GLU 457 n 328 GLU 457 A ARG 458 n 329 ARG 458 A ASP 459 n 330 ASP 459 A LEU 460 n 331 LEU 460 A ARG 461 n 332 ARG 461 A ARG 462 n 333 ARG 462 A TYR 463 n 334 TYR 463 A ALA 464 n 335 ALA 464 A THR 465 n 336 THR 465 A HIS 466 n 337 HIS 466 A GLU 467 n 338 GLU 467 A ARG 468 n 339 ARG 468 A LYS 469 n 340 LYS 469 A MET 470 n 341 MET 470 A MET 471 n 342 MET 471 A LEU 472 n 343 LEU 472 A ASP 473 n 344 ASP 473 A ASN 474 n 345 ASN 474 A HIS 475 n 346 HIS 475 A ALA 476 n 347 ALA 476 A LEU 477 n 348 LEU 477 A TYR 478 n 349 TYR 478 A ASP 479 n 350 ASP 479 A ARG 480 n 351 ARG 480 A THR 481 n 352 THR 481 A LYS 482 n 353 LYS 482 A ARG 483 n 354 ARG 483 A VAL 484 n 355 VAL 484 A PHE 485 n 356 PHE 485 A LEU 486 n 357 LEU 486 A GLU 487 n 358 GLU 487 A ALA 488 n 359 ALA 488 A GLU 489 n 360 GLU 489 A SER 490 n 361 SER 490 A GLU 491 n 362 GLU 491 A GLU 492 n 363 GLU 492 A GLU 493 n 364 GLU 493 A ILE 494 n 365 ILE 494 A PHE 495 n 366 PHE 495 A ALA 496 n 367 ALA 496 A HIS 497 n 368 HIS 497 A LEU 498 n 369 LEU 498 A GLY 499 n 370 GLY 499 A LEU 500 n 371 LEU 500 A ASP 501 n 372 ASP 501 A TYR 502 n 373 TYR 502 A ILE 503 n 374 ILE 503 A GLU 504 n 375 GLU 504 A PRO 505 n 376 PRO 505 A TRP 506 n 377 TRP 506 A GLU 507 n 378 GLU 507 A ARG 508 n 379 ARG 508 A ASN 509 n 380 ASN 509 A ALA 510 n 381 ALA 510 A G 1 n 1 DG 1 C C 2 n 2 DC 2 C C 3 n 3 DC 3 C n 4 4 C 3.6357 1.5989 -1.1613 2.3996 1.3458 2.5635 -0.0050 0.1285 0.1168 -0.3313 -0.0337 -0.0888 -0.2516 0.0405 0.0387 -0.1739 0.0345 -0.0021 -0.1459 0.0246 0.1673 refined 27.7365 11.4653 5.5010 X-RAY DIFFRACTION 0.8420 0.2105 0.1105 2.1350 0.4596 0.4179 -0.0241 -0.1279 0.0581 0.1487 -0.0282 0.3003 0.0008 -0.0891 0.0523 -0.1900 -0.0010 0.0630 -0.1807 -0.0288 0.2176 refined 12.0292 11.2193 29.9170 X-RAY DIFFRACTION 4.1764 -0.9339 1.2173 0.0000 -0.4217 0.9372 -0.0054 0.3132 -0.2098 -0.0414 -0.1275 0.2252 0.1347 -0.0856 0.1329 -0.1798 0.0094 -0.0202 -0.1244 -0.0909 0.2745 refined 7.4184 -1.2642 8.6273 X-RAY DIFFRACTION A 149 A 238 X-RAY DIFFRACTION 1 {A|149 - 238} A 239 A 453 X-RAY DIFFRACTION 2 {A|239 - 453} A 454 A 510 X-RAY DIFFRACTION 3 {A|454 - 510} author_defined_assembly 2 dimeric A THR 253 A O THR 124 1_555 A NA 601 C NA NA 1_555 A VAL 255 A O VAL 126 1_555 80.5 A THR 253 A O THR 124 1_555 A NA 601 C NA NA 1_555 A VAL 258 A O VAL 129 1_555 97.0 A VAL 255 A O VAL 126 1_555 A NA 601 C NA NA 1_555 A VAL 258 A O VAL 129 1_555 86.5 A THR 253 A O THR 124 1_555 A NA 601 C NA NA 1_555 C DC 3 B OP1 DC 3 1_555 167.8 A VAL 255 A O VAL 126 1_555 A NA 601 C NA NA 1_555 C DC 3 B OP1 DC 3 1_555 87.5 A VAL 258 A O VAL 129 1_555 A NA 601 C NA NA 1_555 C DC 3 B OP1 DC 3 1_555 84.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 303 A N VAL 174 A O GLY 341 A O GLY 212 A N LEU 327 A N LEU 198 A O THR 349 A O THR 220 A N ILE 348 A N ILE 219 A O VAL 436 A O VAL 307 A O VAL 433 A O VAL 304 A N LEU 406 A N LEU 277 A O LYS 403 A O LYS 274 A N LEU 381 A N LEU 252 A N MET 471 A N MET 342 A O TYR 478 A O TYR 349 A N LEU 477 A N LEU 348 A O LEU 486 A O LEU 357 1 A CG LYS 149 A CG LYS 20 1 Y 1 A CD LYS 149 A CD LYS 20 1 Y 1 A CE LYS 149 A CE LYS 20 1 Y 1 A NZ LYS 149 A NZ LYS 20 1 Y 1 A CG LEU 181 A CG LEU 52 1 Y 1 A CD1 LEU 181 A CD1 LEU 52 1 Y 1 A CD2 LEU 181 A CD2 LEU 52 1 Y 1 A CG GLU 183 A CG GLU 54 1 Y 1 A CD GLU 183 A CD GLU 54 1 Y 1 A OE1 GLU 183 A OE1 GLU 54 1 Y 1 A OE2 GLU 183 A OE2 GLU 54 1 Y 1 A CG GLU 185 A CG GLU 56 1 Y 1 A CD GLU 185 A CD GLU 56 1 Y 1 A OE1 GLU 185 A OE1 GLU 56 1 Y 1 A OE2 GLU 185 A OE2 GLU 56 1 Y 1 A CD LYS 209 A CD LYS 80 1 Y 1 A CE LYS 209 A CE LYS 80 1 Y 1 A NZ LYS 209 A NZ LYS 80 1 Y 1 A CG GLU 212 A CG GLU 83 1 Y 1 A CD GLU 212 A CD GLU 83 1 Y 1 A OE1 GLU 212 A OE1 GLU 83 1 Y 1 A OE2 GLU 212 A OE2 GLU 83 1 Y 1 A CE LYS 220 A CE LYS 91 1 Y 1 A NZ LYS 220 A NZ LYS 91 1 Y 1 A CD LYS 238 A CD LYS 109 1 Y 1 A CE LYS 238 A CE LYS 109 1 Y 1 A NZ LYS 238 A NZ LYS 109 1 Y 1 A CD LYS 250 A CD LYS 121 1 Y 1 A CE LYS 250 A CE LYS 121 1 Y 1 A NZ LYS 250 A NZ LYS 121 1 Y 1 A CE LYS 261 A CE LYS 132 1 Y 1 A NZ LYS 261 A NZ LYS 132 1 Y 1 A CE LYS 265 A CE LYS 136 1 Y 1 A NZ LYS 265 A NZ LYS 136 1 Y 1 A CZ ARG 268 A CZ ARG 139 1 Y 1 A NH1 ARG 268 A NH1 ARG 139 1 Y 1 A NH2 ARG 268 A NH2 ARG 139 1 Y 1 A CG ARG 284 A CG ARG 155 1 Y 1 A CD ARG 284 A CD ARG 155 1 Y 1 A NE ARG 284 A NE ARG 155 1 Y 1 A CZ ARG 284 A CZ ARG 155 1 Y 1 A NH1 ARG 284 A NH1 ARG 155 1 Y 1 A NH2 ARG 284 A NH2 ARG 155 1 Y 1 A CG GLU 352 A CG GLU 223 1 Y 1 A CD GLU 352 A CD GLU 223 1 Y 1 A OE1 GLU 352 A OE1 GLU 223 1 Y 1 A OE2 GLU 352 A OE2 GLU 223 1 Y 1 A CG GLU 355 A CG GLU 226 1 Y 1 A CD GLU 355 A CD GLU 226 1 Y 1 A OE1 GLU 355 A OE1 GLU 226 1 Y 1 A OE2 GLU 355 A OE2 GLU 226 1 Y 1 A CD LYS 389 A CD LYS 260 1 Y 1 A CE LYS 389 A CE LYS 260 1 Y 1 A NZ LYS 389 A NZ LYS 260 1 Y 1 A CG ARG 393 A CG ARG 264 1 Y 1 A CD ARG 393 A CD ARG 264 1 Y 1 A NE ARG 393 A NE ARG 264 1 Y 1 A CZ ARG 393 A CZ ARG 264 1 Y 1 A NH1 ARG 393 A NH1 ARG 264 1 Y 1 A NH2 ARG 393 A NH2 ARG 264 1 Y 1 A CG LYS 394 A CG LYS 265 1 Y 1 A CD LYS 394 A CD LYS 265 1 Y 1 A CE LYS 394 A CE LYS 265 1 Y 1 A NZ LYS 394 A NZ LYS 265 1 Y 1 A CG LYS 419 A CG LYS 290 1 Y 1 A CD LYS 419 A CD LYS 290 1 Y 1 A CE LYS 419 A CE LYS 290 1 Y 1 A NZ LYS 419 A NZ LYS 290 1 Y 1 A CG GLU 424 A CG GLU 295 1 Y 1 A CD GLU 424 A CD GLU 295 1 Y 1 A OE1 GLU 424 A OE1 GLU 295 1 Y 1 A OE2 GLU 424 A OE2 GLU 295 1 Y 1 A CE LYS 469 A CE LYS 340 1 Y 1 A NZ LYS 469 A NZ LYS 340 1 Y 1 A CE LYS 482 A CE LYS 353 1 Y 1 A NZ LYS 482 A NZ LYS 353 1 Y 1 C C8 DG 1 B C8 DG 1 1 Y 1 C N7 DG 1 B N7 DG 1 1 Y 1 C C5 DG 1 B C5 DG 1 1 Y 1 C C6 DG 1 B C6 DG 1 1 Y 1 C O6 DG 1 B O6 DG 1 1 Y 1 C N1 DG 1 B N1 DG 1 1 Y 1 C C2 DG 1 B C2 DG 1 1 Y 1 C N2 DG 1 B N2 DG 1 1 Y 1 C N3 DG 1 B N3 DG 1 1 Y 1 C C4 DG 1 B C4 DG 1 1 Y 1 C C2 DC 2 B C2 DC 2 1 Y 1 C O2 DC 2 B O2 DC 2 1 Y 1 C N3 DC 2 B N3 DC 2 1 Y 1 C C4 DC 2 B C4 DC 2 1 Y 1 C N4 DC 2 B N4 DC 2 1 Y 1 C C5 DC 2 B C5 DC 2 1 Y 1 C C6 DC 2 B C6 DC 2 1 Y 1 A HIS 130 A HIS 1 1 Y 1 A MET 131 A MET 2 1 Y 1 A SER 132 A SER 3 1 Y 1 A PRO 133 A PRO 4 1 Y 1 A SER 134 A SER 5 1 Y 1 A PRO 135 A PRO 6 1 Y 1 A VAL 136 A VAL 7 1 Y 1 A PRO 137 A PRO 8 1 Y 1 A GLY 138 A GLY 9 1 Y 1 A SER 139 A SER 10 1 Y 1 A GLN 140 A GLN 11 1 Y 1 A ASN 141 A ASN 12 1 Y 1 A VAL 142 A VAL 13 1 Y 1 A PRO 143 A PRO 14 1 Y 1 A ALA 144 A ALA 15 1 Y 1 A PRO 145 A PRO 16 1 Y 1 A ALA 146 A ALA 17 1 Y 1 A VAL 147 A VAL 18 1 Y 1 A LYS 148 A LYS 19 1 Y 1 A VAL 395 A VAL 266 1 Y 1 A SER 420 A SER 291 1 Y 1 A GLY 421 A GLY 292 1 Y 1 A GLN 422 A GLN 293 1 Y 1 A GLN 423 A GLN 294 1 Y 1 C DG 4 B DG 4 1 Y 1 A A O NH1 LYS ARG 394 461 1.95 1 8.68 1.40 114.30 122.98 C C C N1 C1' C2' DC DC DC 3 3 3 N 1 3.92 0.30 108.30 112.22 C C C O4' C1' N1 DC DC DC 3 3 3 N 1 4.57 0.60 118.90 123.47 C C C N1 C2 O2 DC DC DC 3 3 3 N 1 7.91 1.10 118.80 126.71 C C C C2 N1 C1' DC DC DC 3 3 3 N 1 A THR 331 -112.57 -153.60 1 A ASN 509 -85.52 45.51 56.11 6.3175 0.0000 0.0000 4.2283 0.0000 -10.5458 0.9309 0.9011 0.2290 0.1881 0.1901 2.60 47.49 732 14428 5.07 99.00 0.594 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.8580 0.2820 0.2750 PDB ENTRY 1JMS Engh & Huber 0.333 2.60 47.49 187 3072 25 40 2820 0.010 2956 HARMONIC 2.00 1.03 3995 HARMONIC 2.00 1386 SINUSOIDAL 2.00 80 HARMONIC 2.00 436 HARMONIC 5.00 2956 HARMONIC 20.00 0 SEMIHARMONIC 5.00 3.01 2.91 381 SEMIHARMONIC 5.00 3389 SEMIHARMONIC 4.00 0.2586 0.2047 0.2075 2.81 151 2760 2911 7 5.19 99.00 59.25 2.6 47.5 4IQW 14577 14429 0.093 1 11.5 3.6 99.3 0.605 2.6 2.74 2.3 2089 1 3.6 99.7 data collection ADSC Quantum phasing PHASER refinement BUSTER 2.11.2 data reduction XDS data scaling SCALA Tdt core in complex with inhibitor (2Z,5E)-6-[4-(4-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA 1 N N 2 N N 3 N N 4 N N 5 N N A TYR 153 A TYR 24 HELX_P A ARG 157 A ARG 28 5 1 5 A ASN 165 A ASN 36 HELX_P A ARG 182 A ARG 53 1 2 18 A ASN 184 A ASN 55 HELX_P A LEU 201 A LEU 72 1 3 18 A SER 207 A SER 78 HELX_P A GLU 212 A GLU 83 5 4 6 A GLY 218 A GLY 89 HELX_P A GLY 232 A GLY 103 1 5 15 A SER 234 A SER 105 HELX_P A ASP 243 A ASP 114 1 6 10 A ASP 243 A ASP 114 HELX_P A SER 254 A SER 125 1 7 12 A GLY 259 A GLY 130 HELX_P A MET 269 A MET 140 1 8 11 A THR 273 A THR 144 HELX_P A ASP 280 A ASP 151 1 9 8 A THR 286 A THR 157 HELX_P A TYR 295 A TYR 166 1 10 10 A TYR 295 A TYR 166 HELX_P A SER 301 A SER 172 1 11 7 A ARG 305 A ARG 176 HELX_P A LEU 323 A LEU 194 1 12 19 A THR 331 A THR 202 HELX_P A ARG 336 A ARG 207 1 13 6 A THR 354 A THR 225 HELX_P A GLN 372 A GLN 243 1 14 19 A GLY 413 A GLY 284 HELX_P A VAL 415 A VAL 286 5 15 3 A PRO 439 A PRO 310 HELX_P A ASP 441 A ASP 312 5 16 3 A ARG 442 A ARG 313 HELX_P A GLY 452 A GLY 323 1 17 11 A SER 453 A SER 324 HELX_P A LYS 469 A LYS 340 1 18 17 A SER 490 A SER 361 HELX_P A LEU 498 A LEU 369 1 19 9 A GLU 504 A GLU 375 HELX_P A ARG 508 A ARG 379 5 20 5 metalc 2.426 A THR 253 A O THR 124 1_555 A NA 601 C NA NA 1_555 metalc 2.810 A VAL 255 A O VAL 126 1_555 A NA 601 C NA NA 1_555 metalc 2.684 A VAL 258 A O VAL 129 1_555 A NA 601 C NA NA 1_555 metalc 2.680 A NA 601 C NA NA 1_555 C DC 3 B OP1 DC 3 1_555 TRANSFERASE/TRANSFERASE INHIBITOR/DNA terminal transferase, TRANSFERASE-TRANSFERASE INHIBITOR-DNA complex A GLY 452 A GLY 323 1 A SER 453 A SER 324 -0.80 TDT_MOUSE UNP 1 132 P09838 SPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDT EGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKA GFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQ QGLLLYCDILESTFEKFKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWT GSRQFERDLRRYATHERKMMLDNHALYDRTK TDT_MOUSE UNP 1 503 P09838 RVFLEAESEEEIFAHLGLDYIEPWERNA 4IQW PDB 2 1 4IQW GCCG 132 482 4IQW 132 482 P09838 A 1 3 353 503 530 4IQW 483 510 P09838 A 2 354 381 1 4 4IQW 1 4 4IQW C 3 1 4 1 expression tag HIS 130 4IQW A P09838 UNP 1 1 expression tag MET 131 4IQW A P09838 UNP 2 1 LEU engineered mutation ALA 398 4IQW A P09838 UNP 398 269 2 5 3 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 303 A VAL 174 A ASN 304 A ASN 175 A THR 340 A THR 211 A GLY 341 A GLY 212 A LEU 327 A LEU 198 A MET 330 A MET 201 A VAL 344 A VAL 215 A THR 349 A THR 220 A TRP 428 A TRP 299 A MET 437 A MET 308 A GLN 402 A GLN 273 A ASP 411 A ASP 282 A LEU 375 A LEU 246 A LEU 381 A LEU 252 A MET 470 A MET 341 A LEU 472 A LEU 343 A LEU 477 A LEU 348 A ASP 479 A ASP 350 A VAL 484 A VAL 355 A LEU 486 A LEU 357 BINDING SITE FOR RESIDUE NA A 601 A NA 601 Software 4 BINDING SITE FOR RESIDUE 1FQ A 602 A 1FQ 602 Software 9 A THR 253 A THR 124 4 1_555 A VAL 255 A VAL 126 4 1_555 A VAL 258 A VAL 129 4 1_555 C DC 3 B DC 3 4 1_555 A GLY 332 A GLY 203 9 1_555 A ARG 336 A ARG 207 9 1_555 A ASP 345 A ASP 216 9 1_555 A ASP 399 A ASP 270 9 1_555 A TRP 450 A TRP 321 9 1_555 A SER 453 A SER 324 9 1_555 A ARG 454 A ARG 325 9 1_555 A GLN 455 A GLN 326 9 1_555 A ALA 510 A ALA 381 9 1_555 19 P 21 21 21