0.010657
0.006153
0.000000
0.000000
0.012305
0.000000
0.000000
0.000000
0.010013
0.00000
0.00000
0.00000
Ferrer-Orta, C.
Verdaguer, N.
Agudo, R.
Perez-Luque, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
93.836
93.836
99.867
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
R
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
N
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
N
469
N
O
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
O
N
483
N
P
N
484
N
O
N
485
N
O
N
486
N
O
N
487
N
C
N
488
R
C
N
489
N
O
N
490
S
C
N
491
N
O
N
492
R
C
N
493
N
O
N
494
R
C
N
495
N
N
N
496
N
C
N
497
N
O
N
498
N
N
N
499
N
C
N
500
N
O
N
501
N
C
N
502
N
C
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
N
521
N
C
N
522
N
C
N
523
N
O
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
Y
460
N
doub
Y
461
N
sing
Y
462
N
sing
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
doub
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
doub
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
US
Plos Pathog.
1553-7366
6
e1001072
e1001072
10.1371/journal.ppat.1001072
20865120
A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape.
2010
10.2210/pdb4iqx/pdb
pdb_00004iqx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-08-04
ADSC QUANTUM 315
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.977
1.0
ID14-4
ESRF
0.977
SYNCHROTRON
ESRF BEAMLINE ID14-4
54081.258
3D polymerase
P44S, P169S, M296I
1
man
polymer
2236.395
RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3')
1
syn
polymer
1561.000
RNA (5'-R(*GP*GP*CP*CP*C)-3')
1
syn
polymer
18.015
water
41
nat
water
no
no
GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDSRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAAD
YASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQ
TFLKDEIRSMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVD
YSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGIPSGCSATSIINTILNNIYVLYALR
RHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYK
PVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALAHHHHHH
H
GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDSRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAAD
YASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQ
TFLKDEIRSMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVD
YSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGIPSGCSATSIINTILNNIYVLYALR
RHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYK
PVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALAHHHHHH
H
A
polypeptide(L)
no
no
AUGGGCC
AUGGGCC
B
polyribonucleotide
no
no
GGCCC
GGCCC
C
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
C-s8c1
sample
3D
12116
Foot-and-mouth disease virus - type C
562
Escherichia coli
BL21 pLys
plasmid
pET28a
1
2.22
44.58
VAPOR DIFFUSION, HANGING DROP
6.5
26% PEG 4000, 0.2M magnesium acetate, 6% butyrolactone, 0.1M MES , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
0.007
1
B
905
C
920
24.723
B_G905:C920_C
1
-36.620
-2.228
-0.480
-0.401
-3.240
1
B
906
C
919
10.955
B_G906:C919_C
2
-18.702
0.193
0.507
-0.218
-3.180
1
19
B
907
C
918
2.570
B_G907:C918_C
3
-21.423
-1.047
0.071
-0.410
8.016
1
19
B
908
C
917
1.760
B_C908:G917_C
4
-17.434
0.219
-0.314
0.077
4.731
1
19
B
909
C
916
3.195
B_C909:G916_C
5
-11.242
0.918
0.249
-0.133
3.101
47.604
B
B
905
906
21.443
C
C
920
919
3.334
16.640
-0.333
0.135
BB_G905G906:C919C920_CC
1
-16.322
21.034
41.799
-1.246
-0.973
2.608
27.937
B
B
906
907
18.604
C
C
919
918
3.146
8.830
-0.317
-1.176
BB_G906G907:C918C919_CC
2
1.230
-2.591
26.503
-4.334
0.921
3.001
38.287
B
B
907
908
4.911
C
C
918
917
3.070
3.216
0.062
-0.729
BB_G907C908:G917C918_CC
3
1.788
-2.730
38.116
-1.486
0.114
3.128
39.247
B
B
908
909
12.313
C
C
917
916
3.474
8.214
0.363
-1.327
BB_C908C909:G916G917_CC
4
-0.786
1.179
38.404
-2.976
-0.636
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
1
0
2013-02-06
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-01-14
REL
REL
HOH
water
synthesize by a commercial firm
32630
synthetic construct
sample
synthesize by a commercial firm
32630
synthetic construct
sample
HOH
500
4
HOH
HOH
501
A
HOH
501
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
507
4
HOH
HOH
506
A
HOH
510
4
HOH
HOH
507
A
HOH
512
4
HOH
HOH
508
A
HOH
513
4
HOH
HOH
509
A
HOH
514
4
HOH
HOH
510
A
HOH
515
4
HOH
HOH
511
A
HOH
517
4
HOH
HOH
512
A
HOH
518
4
HOH
HOH
513
A
HOH
519
4
HOH
HOH
514
A
HOH
520
4
HOH
HOH
515
A
HOH
522
4
HOH
HOH
516
A
HOH
523
4
HOH
HOH
517
A
HOH
524
4
HOH
HOH
518
A
HOH
526
4
HOH
HOH
519
A
HOH
528
4
HOH
HOH
520
A
HOH
529
4
HOH
HOH
521
A
HOH
530
4
HOH
HOH
522
A
HOH
532
4
HOH
HOH
523
A
HOH
535
4
HOH
HOH
524
A
HOH
537
4
HOH
HOH
525
A
HOH
538
4
HOH
HOH
526
A
HOH
539
4
HOH
HOH
527
A
HOH
540
4
HOH
HOH
528
A
HOH
542
4
HOH
HOH
529
A
HOH
546
4
HOH
HOH
530
A
HOH
547
4
HOH
HOH
531
A
HOH
548
4
HOH
HOH
532
A
HOH
549
4
HOH
HOH
533
A
HOH
550
4
HOH
HOH
534
A
HOH
551
4
HOH
HOH
535
A
HOH
521
4
HOH
HOH
1001
B
HOH
536
4
HOH
HOH
1002
B
HOH
541
4
HOH
HOH
1003
B
HOH
543
4
HOH
HOH
1004
B
HOH
544
4
HOH
HOH
1001
C
HOH
545
4
HOH
HOH
1002
C
GLY
1
n
1
GLY
1
A
LEU
2
n
2
LEU
2
A
ILE
3
n
3
ILE
3
A
VAL
4
n
4
VAL
4
A
ASP
5
n
5
ASP
5
A
THR
6
n
6
THR
6
A
ALA
7
n
7
ARG
7
A
ASP
8
n
8
ASP
8
A
VAL
9
n
9
VAL
9
A
GLU
10
n
10
GLU
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
VAL
13
n
13
VAL
13
A
HIS
14
n
14
HIS
14
A
VAL
15
n
15
VAL
15
A
ALA
16
n
16
MET
16
A
ARG
17
n
17
ARG
17
A
LYS
18
n
18
LYS
18
A
THR
19
n
19
THR
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
ALA
22
n
22
ALA
22
A
PRO
23
n
23
PRO
23
A
THR
24
n
24
THR
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
HIS
27
n
27
HIS
27
A
GLY
28
n
28
GLY
28
A
VAL
29
n
29
VAL
29
A
PHE
30
n
30
PHE
30
A
ASN
31
n
31
ASN
31
A
PRO
32
n
32
PRO
32
A
GLU
33
n
33
GLU
33
A
PHE
34
n
34
PHE
34
A
GLY
35
n
35
GLY
35
A
PRO
36
n
36
PRO
36
A
ALA
37
n
37
ALA
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
ASN
41
n
41
ASN
41
A
LYS
42
n
42
LYS
42
A
ASP
43
n
43
ASP
43
A
SER
44
n
44
SER
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
ASN
47
n
47
ASN
47
A
GLU
48
n
48
GLU
48
A
GLY
49
n
49
GLY
49
A
VAL
50
n
50
VAL
50
A
VAL
51
n
51
VAL
51
A
LEU
52
n
52
LEU
52
A
ASP
53
n
53
ASP
53
A
ALA
54
n
54
GLU
54
A
VAL
55
n
55
VAL
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
SER
58
n
58
SER
58
A
LYS
59
n
59
LYS
59
A
HIS
60
n
60
HIS
60
A
LYS
61
n
61
LYS
61
A
GLY
62
n
62
GLY
62
A
ASP
63
n
63
ASP
63
A
THR
64
n
64
THR
64
A
LYS
65
n
65
LYS
65
A
MET
66
n
66
MET
66
A
SER
67
n
67
SER
67
A
ALA
68
n
68
ALA
68
A
GLU
69
n
69
GLU
69
A
ASP
70
n
70
ASP
70
A
LYS
71
n
71
LYS
71
A
ALA
72
n
72
ALA
72
A
LEU
73
n
73
LEU
73
A
PHE
74
n
74
PHE
74
A
ARG
75
n
75
ARG
75
A
ARG
76
n
76
ARG
76
A
CYS
77
n
77
CYS
77
A
ALA
78
n
78
ALA
78
A
ALA
79
n
79
ALA
79
A
ASP
80
n
80
ASP
80
A
TYR
81
n
81
TYR
81
A
ALA
82
n
82
ALA
82
A
SER
83
n
83
SER
83
A
ARG
84
n
84
ARG
84
A
LEU
85
n
85
LEU
85
A
HIS
86
n
86
HIS
86
A
SER
87
n
87
SER
87
A
VAL
88
n
88
VAL
88
A
LEU
89
n
89
LEU
89
A
GLY
90
n
90
GLY
90
A
THR
91
n
91
THR
91
A
ALA
92
n
92
ALA
92
A
ASN
93
n
93
ASN
93
A
ALA
94
n
94
ALA
94
A
PRO
95
n
95
PRO
95
A
LEU
96
n
96
LEU
96
A
SER
97
n
97
SER
97
A
ILE
98
n
98
ILE
98
A
TYR
99
n
99
TYR
99
A
GLU
100
n
100
GLU
100
A
ALA
101
n
101
ALA
101
A
ILE
102
n
102
ILE
102
A
LYS
103
n
103
LYS
103
A
GLY
104
n
104
GLY
104
A
VAL
105
n
105
VAL
105
A
ALA
106
n
106
ASP
106
A
GLY
107
n
107
GLY
107
A
LEU
108
n
108
LEU
108
A
ALA
109
n
109
ASP
109
A
ALA
110
n
110
ALA
110
A
MET
111
n
111
MET
111
A
GLU
112
n
112
GLU
112
A
PRO
113
n
113
PRO
113
A
ALA
114
n
114
ASP
114
A
THR
115
n
115
THR
115
A
ALA
116
n
116
ALA
116
A
PRO
117
n
117
PRO
117
A
GLY
118
n
118
GLY
118
A
LEU
119
n
119
LEU
119
A
PRO
120
n
120
PRO
120
A
TRP
121
n
121
TRP
121
A
ALA
122
n
122
ALA
122
A
LEU
123
n
123
LEU
123
A
GLN
124
n
124
GLN
124
A
GLY
125
n
125
GLY
125
A
LYS
126
n
126
LYS
126
A
ALA
127
n
127
ARG
127
A
ARG
128
n
128
ARG
128
A
GLY
129
n
129
GLY
129
A
ALA
130
n
130
ALA
130
A
LEU
131
n
131
LEU
131
A
ILE
132
n
132
ILE
132
A
ASP
133
n
133
ASP
133
A
PHE
134
n
134
PHE
134
A
GLU
135
n
135
GLU
135
A
ASN
136
n
136
ASN
136
A
GLY
137
n
137
GLY
137
A
THR
138
n
138
THR
138
A
VAL
139
n
139
VAL
139
A
GLY
140
n
140
GLY
140
A
PRO
141
n
141
PRO
141
A
GLU
142
n
142
GLU
142
A
VAL
143
n
143
VAL
143
A
GLU
144
n
144
GLU
144
A
ALA
145
n
145
ALA
145
A
ALA
146
n
146
ALA
146
A
LEU
147
n
147
LEU
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
MET
150
n
150
MET
150
A
GLU
151
n
151
GLU
151
A
LYS
152
n
152
LYS
152
A
ARG
153
n
153
ARG
153
A
GLU
154
n
154
GLU
154
A
TYR
155
n
155
TYR
155
A
LYS
156
n
156
LYS
156
A
PHE
157
n
157
PHE
157
A
ALA
158
n
158
ALA
158
A
CYS
159
n
159
CYS
159
A
GLN
160
n
160
GLN
160
A
THR
161
n
161
THR
161
A
PHE
162
n
162
PHE
162
A
LEU
163
n
163
LEU
163
A
LYS
164
n
164
LYS
164
A
ASP
165
n
165
ASP
165
A
GLU
166
n
166
GLU
166
A
ILE
167
n
167
ILE
167
A
ARG
168
n
168
ARG
168
A
SER
169
n
169
SER
169
A
MET
170
n
170
MET
170
A
GLU
171
n
171
GLU
171
A
LYS
172
n
172
LYS
172
A
VAL
173
n
173
VAL
173
A
ARG
174
n
174
ARG
174
A
ALA
175
n
175
ALA
175
A
GLY
176
n
176
GLY
176
A
LYS
177
n
177
LYS
177
A
THR
178
n
178
THR
178
A
ARG
179
n
179
ARG
179
A
ILE
180
n
180
ILE
180
A
VAL
181
n
181
VAL
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
LEU
184
n
184
LEU
184
A
PRO
185
n
185
PRO
185
A
VAL
186
n
186
VAL
186
A
GLU
187
n
187
GLU
187
A
HIS
188
n
188
HIS
188
A
ILE
189
n
189
ILE
189
A
LEU
190
n
190
LEU
190
A
TYR
191
n
191
TYR
191
A
THR
192
n
192
THR
192
A
ARG
193
n
193
ARG
193
A
MET
194
n
194
MET
194
A
MET
195
n
195
MET
195
A
ILE
196
n
196
ILE
196
A
GLY
197
n
197
GLY
197
A
ARG
198
n
198
ARG
198
A
PHE
199
n
199
PHE
199
A
CYS
200
n
200
CYS
200
A
ALA
201
n
201
ALA
201
A
GLN
202
n
202
GLN
202
A
MET
203
n
203
MET
203
A
HIS
204
n
204
HIS
204
A
SER
205
n
205
SER
205
A
ASN
206
n
206
ASN
206
A
ASN
207
n
207
ASN
207
A
GLY
208
n
208
GLY
208
A
PRO
209
n
209
PRO
209
A
ALA
210
n
210
GLN
210
A
ILE
211
n
211
ILE
211
A
GLY
212
n
212
GLY
212
A
SER
213
n
213
SER
213
A
ALA
214
n
214
ALA
214
A
VAL
215
n
215
VAL
215
A
GLY
216
n
216
GLY
216
A
CYS
217
n
217
CYS
217
A
ASN
218
n
218
ASN
218
A
PRO
219
n
219
PRO
219
A
ASP
220
n
220
ASP
220
A
VAL
221
n
221
VAL
221
A
ASP
222
n
222
ASP
222
A
TRP
223
n
223
TRP
223
A
GLN
224
n
224
GLN
224
A
ARG
225
n
225
ARG
225
A
PHE
226
n
226
PHE
226
A
GLY
227
n
227
GLY
227
A
THR
228
n
228
THR
228
A
HIS
229
n
229
HIS
229
A
PHE
230
n
230
PHE
230
A
ALA
231
n
231
ALA
231
A
GLN
232
n
232
GLN
232
A
TYR
233
n
233
TYR
233
A
ARG
234
n
234
ARG
234
A
ASN
235
n
235
ASN
235
A
VAL
236
n
236
VAL
236
A
TRP
237
n
237
TRP
237
A
ASP
238
n
238
ASP
238
A
VAL
239
n
239
VAL
239
A
ASP
240
n
240
ASP
240
A
TYR
241
n
241
TYR
241
A
SER
242
n
242
SER
242
A
ALA
243
n
243
ALA
243
A
PHE
244
n
244
PHE
244
A
ASP
245
n
245
ASP
245
A
ALA
246
n
246
ALA
246
A
ASN
247
n
247
ASN
247
A
HIS
248
n
248
HIS
248
A
CYS
249
n
249
CYS
249
A
SER
250
n
250
SER
250
A
ASP
251
n
251
ASP
251
A
ALA
252
n
252
ALA
252
A
MET
253
n
253
MET
253
A
ASN
254
n
254
ASN
254
A
ILE
255
n
255
ILE
255
A
MET
256
n
256
MET
256
A
PHE
257
n
257
PHE
257
A
GLU
258
n
258
GLU
258
A
GLU
259
n
259
GLU
259
A
VAL
260
n
260
VAL
260
A
PHE
261
n
261
PHE
261
A
ARG
262
n
262
ARG
262
A
THR
263
n
263
THR
263
A
GLU
264
n
264
GLU
264
A
PHE
265
n
265
PHE
265
A
GLY
266
n
266
GLY
266
A
PHE
267
n
267
PHE
267
A
HIS
268
n
268
HIS
268
A
PRO
269
n
269
PRO
269
A
ASN
270
n
270
ASN
270
A
ALA
271
n
271
ALA
271
A
GLU
272
n
272
GLU
272
A
TRP
273
n
273
TRP
273
A
ILE
274
n
274
ILE
274
A
LEU
275
n
275
LEU
275
A
LYS
276
n
276
LYS
276
A
THR
277
n
277
THR
277
A
LEU
278
n
278
LEU
278
A
VAL
279
n
279
VAL
279
A
ASN
280
n
280
ASN
280
A
THR
281
n
281
THR
281
A
GLU
282
n
282
GLU
282
A
HIS
283
n
283
HIS
283
A
ALA
284
n
284
ALA
284
A
TYR
285
n
285
TYR
285
A
GLU
286
n
286
GLU
286
A
ASN
287
n
287
ASN
287
A
LYS
288
n
288
LYS
288
A
ARG
289
n
289
ARG
289
A
ILE
290
n
290
ILE
290
A
THR
291
n
291
THR
291
A
VAL
292
n
292
VAL
292
A
GLU
293
n
293
GLU
293
A
GLY
294
n
294
GLY
294
A
GLY
295
n
295
GLY
295
A
ILE
296
n
296
ILE
296
A
PRO
297
n
297
PRO
297
A
SER
298
n
298
SER
298
A
GLY
299
n
299
GLY
299
A
CYS
300
n
300
CYS
300
A
SER
301
n
301
SER
301
A
ALA
302
n
302
ALA
302
A
THR
303
n
303
THR
303
A
SER
304
n
304
SER
304
A
ILE
305
n
305
ILE
305
A
ILE
306
n
306
ILE
306
A
ASN
307
n
307
ASN
307
A
THR
308
n
308
THR
308
A
ILE
309
n
309
ILE
309
A
LEU
310
n
310
LEU
310
A
ASN
311
n
311
ASN
311
A
ASN
312
n
312
ASN
312
A
ILE
313
n
313
ILE
313
A
TYR
314
n
314
TYR
314
A
VAL
315
n
315
VAL
315
A
LEU
316
n
316
LEU
316
A
TYR
317
n
317
TYR
317
A
ALA
318
n
318
ALA
318
A
LEU
319
n
319
LEU
319
A
ARG
320
n
320
ARG
320
A
ARG
321
n
321
ARG
321
A
HIS
322
n
322
HIS
322
A
TYR
323
n
323
TYR
323
A
GLU
324
n
324
GLU
324
A
GLY
325
n
325
GLY
325
A
VAL
326
n
326
VAL
326
A
GLU
327
n
327
GLU
327
A
LEU
328
n
328
LEU
328
A
ASP
329
n
329
ASP
329
A
THR
330
n
330
THR
330
A
TYR
331
n
331
TYR
331
A
THR
332
n
332
THR
332
A
MET
333
n
333
MET
333
A
ILE
334
n
334
ILE
334
A
SER
335
n
335
SER
335
A
TYR
336
n
336
TYR
336
A
GLY
337
n
337
GLY
337
A
ASP
338
n
338
ASP
338
A
ASP
339
n
339
ASP
339
A
ILE
340
n
340
ILE
340
A
VAL
341
n
341
VAL
341
A
VAL
342
n
342
VAL
342
A
ALA
343
n
343
ALA
343
A
SER
344
n
344
SER
344
A
ASP
345
n
345
ASP
345
A
TYR
346
n
346
TYR
346
A
ALA
347
n
347
ASP
347
A
LEU
348
n
348
LEU
348
A
ASP
349
n
349
ASP
349
A
PHE
350
n
350
PHE
350
A
GLU
351
n
351
GLU
351
A
ALA
352
n
352
ALA
352
A
LEU
353
n
353
LEU
353
A
LYS
354
n
354
LYS
354
A
PRO
355
n
355
PRO
355
A
HIS
356
n
356
HIS
356
A
PHE
357
n
357
PHE
357
A
LYS
358
n
358
LYS
358
A
SER
359
n
359
SER
359
A
LEU
360
n
360
LEU
360
A
GLY
361
n
361
GLY
361
A
GLN
362
n
362
GLN
362
A
THR
363
n
363
THR
363
A
ILE
364
n
364
ILE
364
A
THR
365
n
365
THR
365
A
PRO
366
n
366
PRO
366
A
ALA
367
n
367
ALA
367
A
ASP
368
n
368
ASP
368
A
LYS
369
n
369
LYS
369
A
SER
370
n
370
SER
370
A
ALA
371
n
371
ASP
371
A
LYS
372
n
372
LYS
372
A
GLY
373
n
373
GLY
373
A
PHE
374
n
374
PHE
374
A
VAL
375
n
375
VAL
375
A
LEU
376
n
376
LEU
376
A
GLY
377
n
377
GLY
377
A
HIS
378
n
378
HIS
378
A
SER
379
n
379
SER
379
A
ILE
380
n
380
ILE
380
A
THR
381
n
381
THR
381
A
ASP
382
n
382
ASP
382
A
VAL
383
n
383
VAL
383
A
THR
384
n
384
THR
384
A
PHE
385
n
385
PHE
385
A
LEU
386
n
386
LEU
386
A
LYS
387
n
387
LYS
387
A
ARG
388
n
388
ARG
388
A
HIS
389
n
389
HIS
389
A
PHE
390
n
390
PHE
390
A
HIS
391
n
391
HIS
391
A
MET
392
n
392
MET
392
A
ASP
393
n
393
ASP
393
A
ALA
394
n
394
TYR
394
A
GLY
395
n
395
GLY
395
A
THR
396
n
396
THR
396
A
GLY
397
n
397
GLY
397
A
PHE
398
n
398
PHE
398
A
TYR
399
n
399
TYR
399
A
LYS
400
n
400
LYS
400
A
PRO
401
n
401
PRO
401
A
VAL
402
n
402
VAL
402
A
MET
403
n
403
MET
403
A
ALA
404
n
404
ALA
404
A
SER
405
n
405
SER
405
A
LYS
406
n
406
LYS
406
A
THR
407
n
407
THR
407
A
LEU
408
n
408
LEU
408
A
GLU
409
n
409
GLU
409
A
ALA
410
n
410
ALA
410
A
ILE
411
n
411
ILE
411
A
LEU
412
n
412
LEU
412
A
SER
413
n
413
SER
413
A
PHE
414
n
414
PHE
414
A
ALA
415
n
415
ALA
415
A
ARG
416
n
416
ARG
416
A
ARG
417
n
417
ARG
417
A
GLY
418
n
418
GLY
418
A
THR
419
n
419
THR
419
A
ILE
420
n
420
ILE
420
A
GLN
421
n
421
GLN
421
A
ALA
422
n
422
GLU
422
A
LYS
423
n
423
LYS
423
A
LEU
424
n
424
LEU
424
A
ILE
425
n
425
ILE
425
A
SER
426
n
426
SER
426
A
VAL
427
n
427
VAL
427
A
ALA
428
n
428
ALA
428
A
GLY
429
n
429
GLY
429
A
LEU
430
n
430
LEU
430
A
ALA
431
n
431
ALA
431
A
VAL
432
n
432
VAL
432
A
HIS
433
n
433
HIS
433
A
SER
434
n
434
SER
434
A
GLY
435
n
435
GLY
435
A
PRO
436
n
436
PRO
436
A
ASP
437
n
437
ASP
437
A
GLU
438
n
438
GLU
438
A
TYR
439
n
439
TYR
439
A
ARG
440
n
440
ARG
440
A
ARG
441
n
441
ARG
441
A
LEU
442
n
442
LEU
442
A
PHE
443
n
443
PHE
443
A
ALA
444
n
444
GLU
444
A
PRO
445
n
445
PRO
445
A
PHE
446
n
446
PHE
446
A
GLN
447
n
447
GLN
447
A
GLY
448
n
448
GLY
448
A
LEU
449
n
449
LEU
449
A
PHE
450
n
450
PHE
450
A
GLU
451
n
451
GLU
451
A
ILE
452
n
452
ILE
452
A
PRO
453
n
453
PRO
453
A
SER
454
n
454
SER
454
A
TYR
455
n
455
TYR
455
A
ARG
456
n
456
ARG
456
A
SER
457
n
457
SER
457
A
LEU
458
n
458
LEU
458
A
TYR
459
n
459
TYR
459
A
LEU
460
n
460
LEU
460
A
ARG
461
n
461
ARG
461
A
TRP
462
n
462
TRP
462
A
VAL
463
n
463
VAL
463
A
ASN
464
n
464
ASN
464
A
ALA
465
n
465
ALA
465
A
VAL
466
n
466
VAL
466
A
CYS
467
n
467
CYS
467
A
GLY
468
n
468
GLY
468
A
ALA
469
n
469
ASP
469
A
ALA
470
n
470
ALA
470
A
ALA
471
n
471
ALA
471
A
ALA
472
n
472
ALA
472
A
LEU
473
n
473
LEU
473
A
ALA
474
n
474
ALA
474
A
HIS
475
n
475
HIS
475
A
HIS
476
n
476
HIS
476
A
n
477
477
A
n
478
478
A
n
479
479
A
n
480
480
A
n
481
481
A
A
903
n
1
A
903
B
U
904
n
2
U
904
B
G
905
n
3
G
905
B
G
906
n
4
G
906
B
G
907
n
5
G
907
B
C
908
n
6
C
908
B
C
909
n
7
C
909
B
G
916
n
1
G
916
C
G
917
n
2
G
917
C
C
918
n
3
C
918
C
C
919
n
4
C
919
C
C
920
n
5
C
920
C
author_and_software_defined_assembly
PISA
3
trimeric
3480
-34
20440
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
9
A
N
VAL
9
A
O
ASN
287
A
O
ASN
287
A
O
ALA
284
A
O
ALA
284
A
N
CYS
159
A
N
CYS
159
A
N
PHE
162
A
N
PHE
162
A
O
VAL
181
A
O
VAL
181
A
N
ALA
22
A
N
ALA
22
A
O
ALA
415
A
O
ALA
415
A
N
GLY
35
A
N
GLY
35
A
O
ARG
168
A
O
ARG
168
A
N
ASP
133
A
N
ASP
133
A
O
THR
138
A
O
THR
138
A
N
THR
332
A
N
THR
332
A
O
ALA
343
A
O
ALA
343
A
O
VAL
342
A
O
VAL
342
A
N
TRP
237
A
N
TRP
237
A
N
ASP
240
A
N
ASP
240
A
O
THR
365
A
O
THR
365
A
N
PHE
385
A
N
PHE
385
A
O
ARG
388
A
O
ARG
388
A
N
HIS
389
A
N
HIS
389
A
O
VAL
402
A
O
VAL
402
1
A
CG
ARG
7
A
CG
ARG
7
1
Y
1
A
CD
ARG
7
A
CD
ARG
7
1
Y
1
A
NE
ARG
7
A
NE
ARG
7
1
Y
1
A
CZ
ARG
7
A
CZ
ARG
7
1
Y
1
A
NH1
ARG
7
A
NH1
ARG
7
1
Y
1
A
NH2
ARG
7
A
NH2
ARG
7
1
Y
1
A
CG
MET
16
A
CG
MET
16
1
Y
1
A
SD
MET
16
A
SD
MET
16
1
Y
1
A
CE
MET
16
A
CE
MET
16
1
Y
1
A
CG
LYS
42
A
CG
LYS
42
1
Y
1
A
CD
LYS
42
A
CD
LYS
42
1
Y
1
A
CE
LYS
42
A
CE
LYS
42
1
Y
1
A
NZ
LYS
42
A
NZ
LYS
42
1
Y
1
A
CG
GLU
54
A
CG
GLU
54
1
Y
1
A
CD
GLU
54
A
CD
GLU
54
1
Y
1
A
OE1
GLU
54
A
OE1
GLU
54
1
Y
1
A
OE2
GLU
54
A
OE2
GLU
54
1
Y
1
A
CG
ASP
106
A
CG
ASP
106
1
Y
1
A
OD1
ASP
106
A
OD1
ASP
106
1
Y
1
A
OD2
ASP
106
A
OD2
ASP
106
1
Y
1
A
CG
ASP
109
A
CG
ASP
109
1
Y
1
A
OD1
ASP
109
A
OD1
ASP
109
1
Y
1
A
OD2
ASP
109
A
OD2
ASP
109
1
Y
1
A
CG
ASP
114
A
CG
ASP
114
1
Y
1
A
OD1
ASP
114
A
OD1
ASP
114
1
Y
1
A
OD2
ASP
114
A
OD2
ASP
114
1
Y
1
A
CG
ARG
127
A
CG
ARG
127
1
Y
1
A
CD
ARG
127
A
CD
ARG
127
1
Y
1
A
NE
ARG
127
A
NE
ARG
127
1
Y
1
A
CZ
ARG
127
A
CZ
ARG
127
1
Y
1
A
NH1
ARG
127
A
NH1
ARG
127
1
Y
1
A
NH2
ARG
127
A
NH2
ARG
127
1
Y
1
A
CG
GLU
135
A
CG
GLU
135
1
Y
1
A
CD
GLU
135
A
CD
GLU
135
1
Y
1
A
OE1
GLU
135
A
OE1
GLU
135
1
Y
1
A
OE2
GLU
135
A
OE2
GLU
135
1
Y
1
A
CG
GLN
210
A
CG
GLN
210
1
Y
1
A
CD
GLN
210
A
CD
GLN
210
1
Y
1
A
OE1
GLN
210
A
OE1
GLN
210
1
Y
1
A
NE2
GLN
210
A
NE2
GLN
210
1
Y
1
A
CG
GLU
324
A
CG
GLU
324
1
Y
1
A
CD
GLU
324
A
CD
GLU
324
1
Y
1
A
OE1
GLU
324
A
OE1
GLU
324
1
Y
1
A
OE2
GLU
324
A
OE2
GLU
324
1
Y
1
A
CG
ASP
347
A
CG
ASP
347
1
Y
1
A
OD1
ASP
347
A
OD1
ASP
347
1
Y
1
A
OD2
ASP
347
A
OD2
ASP
347
1
Y
1
A
CG
ASP
371
A
CG
ASP
371
1
Y
1
A
OD1
ASP
371
A
OD1
ASP
371
1
Y
1
A
OD2
ASP
371
A
OD2
ASP
371
1
Y
1
A
CG
LYS
372
A
CG
LYS
372
1
Y
1
A
CD
LYS
372
A
CD
LYS
372
1
Y
1
A
CE
LYS
372
A
CE
LYS
372
1
Y
1
A
NZ
LYS
372
A
NZ
LYS
372
1
Y
1
A
CG
TYR
394
A
CG
TYR
394
1
Y
1
A
CD1
TYR
394
A
CD1
TYR
394
1
Y
1
A
CD2
TYR
394
A
CD2
TYR
394
1
Y
1
A
CE1
TYR
394
A
CE1
TYR
394
1
Y
1
A
CE2
TYR
394
A
CE2
TYR
394
1
Y
1
A
CZ
TYR
394
A
CZ
TYR
394
1
Y
1
A
OH
TYR
394
A
OH
TYR
394
1
Y
1
A
CG
ARG
417
A
CG
ARG
417
1
Y
1
A
CD
ARG
417
A
CD
ARG
417
1
Y
1
A
NE
ARG
417
A
NE
ARG
417
1
Y
1
A
CZ
ARG
417
A
CZ
ARG
417
1
Y
1
A
NH1
ARG
417
A
NH1
ARG
417
1
Y
1
A
NH2
ARG
417
A
NH2
ARG
417
1
Y
1
A
CG
GLU
422
A
CG
GLU
422
1
Y
1
A
CD
GLU
422
A
CD
GLU
422
1
Y
1
A
OE1
GLU
422
A
OE1
GLU
422
1
Y
1
A
OE2
GLU
422
A
OE2
GLU
422
1
Y
1
A
CG
GLU
444
A
CG
GLU
444
1
Y
1
A
CD
GLU
444
A
CD
GLU
444
1
Y
1
A
OE1
GLU
444
A
OE1
GLU
444
1
Y
1
A
OE2
GLU
444
A
OE2
GLU
444
1
Y
1
A
CG
ASP
469
A
CG
ASP
469
1
Y
1
A
OD1
ASP
469
A
OD1
ASP
469
1
Y
1
A
OD2
ASP
469
A
OD2
ASP
469
1
Y
1
A
HIS
477
A
HIS
477
1
Y
1
A
HIS
478
A
HIS
478
1
Y
1
A
HIS
479
A
HIS
479
1
Y
1
A
HIS
480
A
HIS
480
1
Y
1
A
HIS
481
A
HIS
481
1
Y
1
A
LYS
18
67.96
122.14
1
A
GLU
33
-79.74
42.21
1
A
GLU
286
52.14
-120.01
1
A
LYS
369
54.09
-152.62
1
A
ASP
371
67.44
-34.35
1
A
CYS
467
-163.15
114.82
48.178
-0.02
-0.01
0.00
-0.02
0.00
0.03
0.924
0.906
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25389
0.22176
0.2253
0.22341
2.50
29.36
913
18214
16981
5.1
99.27
22.224
0.234
RANDOM
1
THROUGHOUT
1.0
MOLECULAR REPLACEMENT
1.074
0.313
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.50
29.36
41
3969
0
251
3677
0.006
0.022
4045
0.855
2.025
5541
4.281
5.000
475
32.565
23.114
167
14.730
15.000
601
13.775
15.000
25
0.056
0.200
624
0.002
0.020
3007
0.173
0.200
1795
0.292
0.200
2764
0.114
0.200
153
0.125
0.200
31
0.119
0.200
5
0.214
1.500
2420
0.374
2.000
3784
0.398
3.000
1918
0.641
4.500
1757
0.306
0.288
2.565
71
1216
20
99.92
36.7
2.5
100
4IQX
18214
18047
2.0
1.0
0.078
1
14.1
5.2
99.3
0.30
2.5
2.64
5.7
1
100.0
data collection
ADSC
Quantum
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALA
phasing
REFMAC
5.2.0019
Mutant P44S P169S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
ALA
26
A
ALA
26
HELX_P
A
ASN
31
A
ASN
31
1
1
6
A
VAL
51
A
VAL
51
HELX_P
A
PHE
57
A
PHE
57
1
2
7
A
SER
67
A
SER
67
HELX_P
A
GLY
90
A
GLY
90
1
3
24
A
SER
97
A
SER
97
HELX_P
A
GLY
104
A
GLY
104
1
4
8
A
PRO
120
A
PRO
120
HELX_P
A
GLN
124
A
GLN
124
5
5
5
A
ARG
127
A
ARG
127
HELX_P
A
ALA
130
A
ALA
130
5
6
4
A
GLY
140
A
GLY
140
HELX_P
A
LYS
152
A
LYS
152
1
7
13
A
MET
170
A
MET
170
HELX_P
A
ALA
175
A
ALA
175
1
8
6
A
PRO
185
A
PRO
185
HELX_P
A
ASN
206
A
ASN
206
1
9
22
A
ASN
218
A
ASN
218
HELX_P
A
ALA
231
A
ALA
231
1
10
14
A
CYS
249
A
CYS
249
HELX_P
A
PHE
261
A
PHE
261
1
11
13
A
ARG
262
A
ARG
262
HELX_P
A
GLY
266
A
GLY
266
5
12
5
A
PRO
269
A
PRO
269
HELX_P
A
THR
277
A
THR
277
1
13
9
A
ALA
302
A
ALA
302
HELX_P
A
TYR
323
A
TYR
323
1
14
22
A
GLU
327
A
GLU
327
HELX_P
A
TYR
331
A
TYR
331
5
15
5
A
ASP
349
A
ASP
349
HELX_P
A
SER
359
A
SER
359
1
16
11
A
SER
379
A
SER
379
HELX_P
A
ASP
382
A
ASP
382
5
17
4
A
ALA
404
A
ALA
404
HELX_P
A
SER
413
A
SER
413
1
18
10
A
THR
419
A
THR
419
HELX_P
A
VAL
432
A
VAL
432
1
19
14
A
GLY
435
A
GLY
435
HELX_P
A
GLU
444
A
GLU
444
1
20
10
A
PRO
445
A
PRO
445
HELX_P
A
GLN
447
A
GLN
447
5
21
3
A
SER
454
A
SER
454
HELX_P
A
CYS
467
A
CYS
467
1
22
14
A
CYS
467
A
CYS
467
HELX_P
A
ALA
474
A
ALA
474
1
23
8
hydrog
G-C PAIR
B
G
905
B
N1
G
3
1_555
C
C
920
C
O2
C
5
1_555
hydrog
G-C PAIR
B
G
906
B
N1
G
4
1_555
C
C
919
C
N3
C
4
1_555
hydrog
WATSON-CRICK
B
G
907
B
N1
G
5
1_555
C
C
918
C
N3
C
3
1_555
hydrog
WATSON-CRICK
B
G
907
B
N2
G
5
1_555
C
C
918
C
O2
C
3
1_555
hydrog
WATSON-CRICK
B
G
907
B
O6
G
5
1_555
C
C
918
C
N4
C
3
1_555
hydrog
WATSON-CRICK
B
C
908
B
N3
C
6
1_555
C
G
917
C
N1
G
2
1_555
hydrog
WATSON-CRICK
B
C
908
B
N4
C
6
1_555
C
G
917
C
O6
G
2
1_555
hydrog
WATSON-CRICK
B
C
908
B
O2
C
6
1_555
C
G
917
C
N2
G
2
1_555
hydrog
WATSON-CRICK
B
C
909
B
N3
C
7
1_555
C
G
916
C
N1
G
1
1_555
hydrog
WATSON-CRICK
B
C
909
B
N4
C
7
1_555
C
G
916
C
O6
G
1
1_555
hydrog
WATSON-CRICK
B
C
909
B
O2
C
7
1_555
C
G
916
C
N2
G
1
1_555
TRANSFERASE/DNA
close right hand conformation, RNA-dependent RNA polymerase, 3D polymerase, TRANSFERASE-DNA complex
A
LEU
119
A
LEU
119
1
A
PRO
120
A
PRO
120
0.40
Q9QCE4_9PICO
UNP
1
1858
Q9QCE4
GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAAD
YASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQ
TFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVD
YSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALR
RHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYK
PVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDA
4IQX
PDB
2
4IQX
4IQX
PDB
3
4IQX
1858
2327
4IQX
1
470
Q9QCE4
A
1
1
470
903
909
4IQX
903
909
4IQX
B
2
1
7
916
920
4IQX
916
920
4IQX
C
3
1
5
1
PRO
engineered mutation
SER
44
4IQX
A
Q9QCE4
UNP
1901
44
1
PRO
engineered mutation
SER
169
4IQX
A
Q9QCE4
UNP
2026
169
1
MET
engineered mutation
ILE
296
4IQX
A
Q9QCE4
UNP
2153
296
1
expression tag
ALA
471
4IQX
A
Q9QCE4
UNP
471
1
expression tag
ALA
472
4IQX
A
Q9QCE4
UNP
472
1
expression tag
LEU
473
4IQX
A
Q9QCE4
UNP
473
1
expression tag
ALA
474
4IQX
A
Q9QCE4
UNP
474
1
expression tag
HIS
475
4IQX
A
Q9QCE4
UNP
475
1
expression tag
HIS
476
4IQX
A
Q9QCE4
UNP
476
1
expression tag
HIS
477
4IQX
A
Q9QCE4
UNP
477
1
expression tag
HIS
478
4IQX
A
Q9QCE4
UNP
478
1
expression tag
HIS
479
4IQX
A
Q9QCE4
UNP
479
1
expression tag
HIS
480
4IQX
A
Q9QCE4
UNP
480
1
expression tag
HIS
481
4IQX
A
Q9QCE4
UNP
481
4
2
2
2
4
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
2
A
LEU
2
A
VAL
13
A
VAL
13
A
ASN
280
A
ASN
280
A
GLU
293
A
GLU
293
A
CYS
159
A
CYS
159
A
LEU
163
A
LEU
163
A
ILE
180
A
ILE
180
A
VAL
183
A
VAL
183
A
LEU
21
A
LEU
21
A
PRO
23
A
PRO
23
A
PHE
414
A
PHE
414
A
ARG
416
A
ARG
416
A
PHE
34
A
PHE
34
A
PRO
36
A
PRO
36
A
ILE
167
A
ILE
167
A
SER
169
A
SER
169
A
ILE
132
A
ILE
132
A
ASP
133
A
ASP
133
A
THR
138
A
THR
138
A
VAL
139
A
VAL
139
A
THR
332
A
THR
332
A
TYR
336
A
TYR
336
A
ASP
339
A
ASP
339
A
SER
344
A
SER
344
A
ASN
235
A
ASN
235
A
TYR
241
A
TYR
241
A
ILE
364
A
ILE
364
A
PRO
366
A
PRO
366
A
THR
384
A
THR
384
A
PHE
385
A
PHE
385
A
ARG
388
A
ARG
388
A
MET
392
A
MET
392
A
TYR
399
A
TYR
399
A
VAL
402
A
VAL
402
154
P 32 2 1